BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00021587
         (1342 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004496322.1| PREDICTED: RNA pseudourine synthase 5-like [...   444   e-137
ref|XP_003556222.1| PREDICTED: RNA pseudouridine synthase 5-like...   439   e-135
ref|XP_003591952.1| RNA pseudourine synthase [Medicago truncatul...   434   e-134
gb|ESW15679.1| hypothetical protein PHAVU_007G093000g [Phaseolus...   440   e-134
gb|EOY18594.1| Pseudouridine synthase family protein [Theobroma ...   436   e-133
gb|EXB80105.1| RNA pseudourine synthase 5 [Morus notabilis]           434   e-132
ref|XP_004307403.1| PREDICTED: RNA pseudourine synthase 5-like [...   435   e-132
ref|XP_006485880.1| PREDICTED: RNA pseudouridine synthase 5-like...   434   e-131
ref|XP_004233537.1| PREDICTED: RNA pseudourine synthase 5-like [...   430   e-131
ref|XP_002312025.1| hypothetical protein POPTR_0008s04160g [Popu...   434   e-131
emb|CBI31488.3| unnamed protein product [Vitis vinifera]              434   e-131
ref|XP_002276664.1| PREDICTED: RNA pseudourine synthase 5-like [...   432   e-131
ref|XP_006485879.1| PREDICTED: RNA pseudouridine synthase 5-like...   429   e-130
ref|XP_006346977.1| PREDICTED: RNA pseudouridine synthase 5-like...   428   e-130
ref|XP_004143830.1| PREDICTED: RNA pseudourine synthase 5-like [...   424   e-129
ref|XP_004157313.1| PREDICTED: RNA pseudourine synthase 5-like [...   423   e-128
ref|XP_006346975.1| PREDICTED: RNA pseudouridine synthase 5-like...   422   e-128
ref|XP_006346978.1| PREDICTED: RNA pseudouridine synthase 5-like...   404   e-123
ref|XP_006651272.1| PREDICTED: RNA pseudouridine synthase 5-like...   402   e-122
sp|Q0DST9.2|PUS5_ORYSJ RecName: Full=RNA pseudouridine synthase ...   399   e-121

>ref|XP_004496322.1| PREDICTED: RNA pseudourine synthase 5-like [Cicer arietinum]
          Length = 368

 Score =  444 bits (1143), Expect(2) = e-137
 Identities = 219/314 (69%), Positives = 261/314 (83%), Gaps = 1/314 (0%)
 Frame = +1

Query: 241  RRIHNKQITIDGCVVTDPKIILRGGEELVYHRLPWKEPDAPYLLEILYEDNDVIALNKPS 420
            +RI + QIT+D  VVTDP  +LR G +LVYHRLPWKEPDAP+ +++LYED+D+IALNKPS
Sbjct: 52   QRIKSDQITVDAKVVTDPNTLLRAGSKLVYHRLPWKEPDAPHTIQVLYEDDDIIALNKPS 111

Query: 421  GLQVLPGGLFQQRTVLTQLQRHADN-LTASGYQEPHPVPVHRLGRGTSGVLLCAKTKIAK 597
            GLQVLPGGLFQQRTVLTQLQ   +N  T   +Q+PHPVPVHRLGRGTSG+LLCAKTK+A+
Sbjct: 112  GLQVLPGGLFQQRTVLTQLQWETNNKCTFEAHQKPHPVPVHRLGRGTSGILLCAKTKLAR 171

Query: 598  SRLAAFFADGTSAVGVCRMNDTQQKATRNITKLYRALASGVIIEDEVFIDQPIGLVKYPG 777
              LA++FADGTS +G  R  DT Q+  + I K+YRAL SG+I  D+V IDQPIG+VKYPG
Sbjct: 172  VHLASYFADGTSRIGGKR--DTNQELGK-IAKIYRALVSGIIDNDKVTIDQPIGMVKYPG 228

Query: 778  VAKGLYVASPSGKPALSKVVVLERNLLSNSTLVQVEIQSGRPHQIRIHLSFIGHPLVGDP 957
            VAKGLYVAS SGKPALS V +LERN+  NSTLVQV+IQSGRPHQIRIHLSFIGHPL+GDP
Sbjct: 229  VAKGLYVASQSGKPALSVVDILERNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPLIGDP 288

Query: 958  LYSTDGQPKFSDHESVDESFAQDGGYERPEKPVPGDCGYHLHAHHVVFSHPLTNEINEIS 1137
            LY+  GQPK  D++ +D+SFA+DGGY RP KPVPGDCGY+LHAH ++ +HP+TNEI EI 
Sbjct: 289  LYAVGGQPKCLDYDFLDDSFAEDGGYPRPPKPVPGDCGYYLHAHELLLTHPITNEIIEII 348

Query: 1138 APLPLNLHTVEESK 1179
            APLP  L T EE+K
Sbjct: 349  APLPSILQTHEEAK 362



 Score = 72.4 bits (176), Expect(2) = e-137
 Identities = 31/48 (64%), Positives = 37/48 (77%)
 Frame = +2

Query: 101 TKMVSFGEPWPEFNDGIYYRDLLRPSDAGATLIDFYSRKYKSSAPLHG 244
           ++    G PWPE NDG+ Y D++RPSDAG TLI+FYS KYKSSAPL G
Sbjct: 2   SRQKKIGVPWPELNDGLSYNDVVRPSDAGLTLIEFYSTKYKSSAPLQG 49


>ref|XP_003556222.1| PREDICTED: RNA pseudouridine synthase 5-like [Glycine max]
          Length = 371

 Score =  439 bits (1128), Expect(2) = e-135
 Identities = 218/314 (69%), Positives = 261/314 (83%), Gaps = 1/314 (0%)
 Frame = +1

Query: 241  RRIHNKQITIDGCVVTDPKIILRGGEELVYHRLPWKEPDAPYLLEILYEDNDVIALNKPS 420
            +RI + QIT+DG VVTD   +LR G +L+YHRLPWKEPDAP+++++LYED+D+IALNKPS
Sbjct: 52   QRIKSGQITVDGGVVTDSNTVLRVGSKLIYHRLPWKEPDAPHMIDVLYEDDDMIALNKPS 111

Query: 421  GLQVLPGGLFQQRTVLTQLQRHADNL-TASGYQEPHPVPVHRLGRGTSGVLLCAKTKIAK 597
            GLQVLPGGL+QQRT+LTQLQ  A+N  T   ++  HPVPVHRLGRGTSG+LLCAKTK+A+
Sbjct: 112  GLQVLPGGLYQQRTILTQLQWEANNQGTCEMHKRLHPVPVHRLGRGTSGILLCAKTKLAR 171

Query: 598  SRLAAFFADGTSAVGVCRMNDTQQKATRNITKLYRALASGVIIEDEVFIDQPIGLVKYPG 777
            +RLA+ FADGTS VG  R  DT+Q+  + I K+YRAL SG++  D+V I+QPIG+VKYPG
Sbjct: 172  ARLASHFADGTSHVGGKR--DTKQELGK-IAKMYRALVSGIVENDKVTINQPIGIVKYPG 228

Query: 778  VAKGLYVASPSGKPALSKVVVLERNLLSNSTLVQVEIQSGRPHQIRIHLSFIGHPLVGDP 957
            VAKGLYVAS SGKPALS V +LE N+  NSTLVQV+IQSGRPHQIRIHLSFIGHPL+GDP
Sbjct: 229  VAKGLYVASESGKPALSVVDILETNIQENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDP 288

Query: 958  LYSTDGQPKFSDHESVDESFAQDGGYERPEKPVPGDCGYHLHAHHVVFSHPLTNEINEIS 1137
            LY   GQPK  D + VDESFA+DGGY+RP KPVPGDCGY+LHAH +V SHP TNE+ EI 
Sbjct: 289  LYGVGGQPKCLDCDFVDESFAEDGGYQRPTKPVPGDCGYYLHAHKLVLSHPTTNELIEII 348

Query: 1138 APLPLNLHTVEESK 1179
            APLP  LHT EE+K
Sbjct: 349  APLPSALHTAEEAK 362



 Score = 72.0 bits (175), Expect(2) = e-135
 Identities = 33/48 (68%), Positives = 37/48 (77%)
 Frame = +2

Query: 101 TKMVSFGEPWPEFNDGIYYRDLLRPSDAGATLIDFYSRKYKSSAPLHG 244
           T    FG PWPE NDG+ Y D++R SDAGATLI+FYS KYKSSAPL G
Sbjct: 2   TSRKKFGIPWPECNDGLSYDDVVRASDAGATLIEFYSTKYKSSAPLQG 49


>ref|XP_003591952.1| RNA pseudourine synthase [Medicago truncatula]
            gi|358349060|ref|XP_003638558.1| RNA pseudourine synthase
            [Medicago truncatula] gi|355481000|gb|AES62203.1| RNA
            pseudourine synthase [Medicago truncatula]
            gi|355504493|gb|AES85696.1| RNA pseudourine synthase
            [Medicago truncatula]
          Length = 371

 Score =  434 bits (1116), Expect(2) = e-134
 Identities = 220/317 (69%), Positives = 259/317 (81%), Gaps = 2/317 (0%)
 Frame = +1

Query: 241  RRIHNKQITIDGCVVTDPKIILRGGEELVYHRLPWKEPDAPYLLEILYEDNDVIALNKPS 420
            +RI + QIT+D  VVTDP  ILR G +LVYHR+PWKEPDAP+ +E+LYED+D+IALNKPS
Sbjct: 52   QRIKSDQITLDARVVTDPNTILRVGSKLVYHRIPWKEPDAPHTIEVLYEDDDIIALNKPS 111

Query: 421  GLQVLPGGLFQQRTVLTQLQRHADNL-TASGYQEPHPVPVHRLGRGTSGVLLCAKTKIAK 597
            GLQVLPGGLFQQRTVLTQLQ   +N  T   +Q+PHPVPVHRLGRGTSG+LLCAKTK+A+
Sbjct: 112  GLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGRGTSGILLCAKTKLAR 171

Query: 598  SRLAAFFADGTSAVGVCRMNDTQQKATRNITKLYRALASGVIIEDEVFIDQPIGLVKYPG 777
            +RLA++FADGTS +       T Q+  + I K+YRAL SG+I  D+V I+QPIG+VKYPG
Sbjct: 172  ARLASYFADGTSRIE--GKGHTNQELGK-IAKIYRALVSGIINNDQVTINQPIGMVKYPG 228

Query: 778  VAKGLYVASPSGKPALSKVVVLERNLLSNSTLVQV-EIQSGRPHQIRIHLSFIGHPLVGD 954
            VAKGLYVAS SGKPALS V VLERN+  NSTLVQV +IQSGRPHQIRIHLSFIGHPL+GD
Sbjct: 229  VAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVVKIQSGRPHQIRIHLSFIGHPLLGD 288

Query: 955  PLYSTDGQPKFSDHESVDESFAQDGGYERPEKPVPGDCGYHLHAHHVVFSHPLTNEINEI 1134
            PLY+  GQPK  D + +DESFA+DGGY RP KPVPGDCGYHLHAH +  SHP+TNEI E+
Sbjct: 289  PLYAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLFLSHPITNEIIEM 348

Query: 1135 SAPLPLNLHTVEESKAK 1185
             APLP  L T EE+ A+
Sbjct: 349  IAPLPSILQTHEEAIAQ 365



 Score = 73.2 bits (178), Expect(2) = e-134
 Identities = 32/42 (76%), Positives = 36/42 (85%)
 Frame = +2

Query: 119 GEPWPEFNDGIYYRDLLRPSDAGATLIDFYSRKYKSSAPLHG 244
           G PWPEFNDG+ Y D++RPSDAG TLI+FYS KYKSSAPL G
Sbjct: 8   GIPWPEFNDGLSYDDVVRPSDAGLTLIEFYSTKYKSSAPLQG 49


>gb|ESW15679.1| hypothetical protein PHAVU_007G093000g [Phaseolus vulgaris]
          Length = 365

 Score =  440 bits (1131), Expect(2) = e-134
 Identities = 222/313 (70%), Positives = 263/313 (84%)
 Frame = +1

Query: 241  RRIHNKQITIDGCVVTDPKIILRGGEELVYHRLPWKEPDAPYLLEILYEDNDVIALNKPS 420
            +RI + QIT DG VVTD   +LR G +LVYHRLPWKEPDAP+++E+LYED+++IALNKPS
Sbjct: 52   QRIKSGQITFDGRVVTDSSTVLRVGSKLVYHRLPWKEPDAPHMIEVLYEDDEMIALNKPS 111

Query: 421  GLQVLPGGLFQQRTVLTQLQRHADNLTASGYQEPHPVPVHRLGRGTSGVLLCAKTKIAKS 600
            GLQVLPGGLFQQRTVLTQLQ  A NL    +++PHPVPVHRLGRGTSG+LLCAKTK+A++
Sbjct: 112  GLQVLPGGLFQQRTVLTQLQWEA-NL----HKKPHPVPVHRLGRGTSGILLCAKTKLARA 166

Query: 601  RLAAFFADGTSAVGVCRMNDTQQKATRNITKLYRALASGVIIEDEVFIDQPIGLVKYPGV 780
            RLA++FADGTS +G  R  DT  +  + I K+YR LASG++  DEV I+QPIG+VKYPGV
Sbjct: 167  RLASYFADGTSHIGGKR--DTNGEIGK-IAKIYRGLASGIVENDEVTINQPIGVVKYPGV 223

Query: 781  AKGLYVASPSGKPALSKVVVLERNLLSNSTLVQVEIQSGRPHQIRIHLSFIGHPLVGDPL 960
            AKGLYVAS SGKPALS V +LERN+  NSTLVQV+IQSGRPHQIRIHLSFIGHPL+GDPL
Sbjct: 224  AKGLYVASQSGKPALSVVGILERNVQENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPL 283

Query: 961  YSTDGQPKFSDHESVDESFAQDGGYERPEKPVPGDCGYHLHAHHVVFSHPLTNEINEISA 1140
            Y   GQPK  D +S+DESFA+DGGY+RP KPVPGDCGY+LHAH +V SHPLTNE+ EI+A
Sbjct: 284  YGDGGQPKCLDCDSIDESFAEDGGYQRPTKPVPGDCGYNLHAHKLVLSHPLTNELIEITA 343

Query: 1141 PLPLNLHTVEESK 1179
            PLP  L T EE+K
Sbjct: 344  PLPSVLQTPEEAK 356



 Score = 65.9 bits (159), Expect(2) = e-134
 Identities = 29/43 (67%), Positives = 34/43 (79%)
 Frame = +2

Query: 116 FGEPWPEFNDGIYYRDLLRPSDAGATLIDFYSRKYKSSAPLHG 244
           FG PWPE NDG+ Y D++R SD+G TLI+FY  KYKSSAPL G
Sbjct: 7   FGIPWPECNDGLSYDDVVRSSDSGLTLIEFYFTKYKSSAPLQG 49


>gb|EOY18594.1| Pseudouridine synthase family protein [Theobroma cacao]
          Length = 378

 Score =  436 bits (1122), Expect(2) = e-133
 Identities = 216/317 (68%), Positives = 254/317 (80%), Gaps = 1/317 (0%)
 Frame = +1

Query: 241  RRIHNKQITIDGCVVTDPKIILRGGEELVYHRLPWKEPDAPYLLEILYEDNDVIALNKPS 420
            +RI N QI++DG VV DP  ILRG  ELVYHRLPWKEPDAP+ LE+LYED+D+IALNKPS
Sbjct: 57   QRIQNGQISVDGRVVRDPNTILRGSSELVYHRLPWKEPDAPHALEVLYEDDDMIALNKPS 116

Query: 421  GLQVLPGGLFQQRTVLTQLQRHADNLTAS-GYQEPHPVPVHRLGRGTSGVLLCAKTKIAK 597
            GLQVLPGGLFQQRTVLTQL       T+S   QE HPVPVHRLGRGTSG+LLCAKTK AK
Sbjct: 117  GLQVLPGGLFQQRTVLTQLSWRMRKQTSSLASQESHPVPVHRLGRGTSGILLCAKTKAAK 176

Query: 598  SRLAAFFADGTSAVGVCRMNDTQQKATRNITKLYRALASGVIIEDEVFIDQPIGLVKYPG 777
            + LAA+FADGTS +G       Q   TR I+K+YRAL +G++ ED+V I+QPIG+V+YPG
Sbjct: 177  TCLAAYFADGTSLIGANSNRKMQPSCTRKISKIYRALVTGILGEDKVVINQPIGIVQYPG 236

Query: 778  VAKGLYVASPSGKPALSKVVVLERNLLSNSTLVQVEIQSGRPHQIRIHLSFIGHPLVGDP 957
            VAKGLYVASPSGKPALSKV VLE++   N TLVQV+I+SGRPHQIRIHLSFIGHPL+GDP
Sbjct: 237  VAKGLYVASPSGKPALSKVEVLEKDEQQNHTLVQVQIESGRPHQIRIHLSFIGHPLLGDP 296

Query: 958  LYSTDGQPKFSDHESVDESFAQDGGYERPEKPVPGDCGYHLHAHHVVFSHPLTNEINEIS 1137
            LY   GQP+  D E VDE++AQDGGY+RP  PVPGDCGY+LHAH ++ SHP T+EI  I+
Sbjct: 297  LYIAGGQPRCFDSEFVDENYAQDGGYQRPVNPVPGDCGYYLHAHRLLLSHPTTDEIINIT 356

Query: 1138 APLPLNLHTVEESKAKK 1188
            APLP  L T +E +  +
Sbjct: 357  APLPPVLQTQDEVRRSR 373



 Score = 68.2 bits (165), Expect(2) = e-133
 Identities = 28/48 (58%), Positives = 38/48 (79%)
 Frame = +2

Query: 101 TKMVSFGEPWPEFNDGIYYRDLLRPSDAGATLIDFYSRKYKSSAPLHG 244
           T+ + FG PWPE NDG++Y D+++PSD+  TLI+FYS KYK+SAP  G
Sbjct: 7   TQSLVFGLPWPELNDGLFYDDVIKPSDSELTLIEFYSSKYKNSAPSQG 54


>gb|EXB80105.1| RNA pseudourine synthase 5 [Morus notabilis]
          Length = 377

 Score =  434 bits (1116), Expect(2) = e-132
 Identities = 220/319 (68%), Positives = 256/319 (80%), Gaps = 1/319 (0%)
 Frame = +1

Query: 241  RRIHNKQITIDGCVVTDPKIILRGGEELVYHRLPWKEPDAPYLLEILYEDNDVIALNKPS 420
            +RI N QIT++G VV DP  IL  G ELVYHRLPWKEP APY+LEILYED D+IAL+KPS
Sbjct: 59   QRIRNGQITVNGRVVRDPDTILSIGSELVYHRLPWKEPGAPYILEILYEDGDMIALDKPS 118

Query: 421  GLQVLPGGLFQQRTVLTQLQRHADNLTASGYQ-EPHPVPVHRLGRGTSGVLLCAKTKIAK 597
             LQVLPGGLFQQRTVLTQLQ  A   ++S    EP+PVPVHRLGRGTSG+LLCAKTK AK
Sbjct: 119  ELQVLPGGLFQQRTVLTQLQWRATKQSSSLVCCEPNPVPVHRLGRGTSGILLCAKTKFAK 178

Query: 598  SRLAAFFADGTSAVGVCRMNDTQQKATRNITKLYRALASGVIIEDEVFIDQPIGLVKYPG 777
            ++LAA+FADGTS VG    N+ +  A R I K+YRAL +G++ ED+V ++QPIG V+YPG
Sbjct: 179  TQLAAYFADGTSYVGGNSKNNLELNARRKILKIYRALVTGIVCEDKVIVEQPIGTVQYPG 238

Query: 778  VAKGLYVASPSGKPALSKVVVLERNLLSNSTLVQVEIQSGRPHQIRIHLSFIGHPLVGDP 957
            VAKGLYVASPSGKPALSKV VLER++  N TLV+VEIQSGRPHQIRIHLSFIGHPL+GDP
Sbjct: 239  VAKGLYVASPSGKPALSKVEVLERDVEKNCTLVKVEIQSGRPHQIRIHLSFIGHPLLGDP 298

Query: 958  LYSTDGQPKFSDHESVDESFAQDGGYERPEKPVPGDCGYHLHAHHVVFSHPLTNEINEIS 1137
            LY   G+P+  D E VD SFAQDGG+ RP KPVPGDCGY LHAHHV  SHP TNE+ EI+
Sbjct: 299  LYVVGGRPRCFDPEFVDGSFAQDGGFPRPAKPVPGDCGYTLHAHHVSLSHPTTNEVIEIT 358

Query: 1138 APLPLNLHTVEESKAKKVL 1194
            APLP  L T +E++   V+
Sbjct: 359  APLPPVLWTRQEAQETSVI 377



 Score = 66.2 bits (160), Expect(2) = e-132
 Identities = 28/43 (65%), Positives = 35/43 (81%)
 Frame = +2

Query: 116 FGEPWPEFNDGIYYRDLLRPSDAGATLIDFYSRKYKSSAPLHG 244
           FG  WPE NDG++Y D++R SD+ +TLI FYSRKYK+SAPL G
Sbjct: 14  FGFSWPELNDGLFYSDVVRTSDSESTLIQFYSRKYKNSAPLQG 56


>ref|XP_004307403.1| PREDICTED: RNA pseudourine synthase 5-like [Fragaria vesca subsp.
            vesca]
          Length = 375

 Score =  435 bits (1118), Expect(2) = e-132
 Identities = 217/312 (69%), Positives = 251/312 (80%), Gaps = 1/312 (0%)
 Frame = +1

Query: 241  RRIHNKQITIDGCVVTDPKIILRGGEELVYHRLPWKEPDAPYLLEILYEDNDVIALNKPS 420
            +RI N QIT+DG VV D   ILR G ELVYHRLPW EPDAPYLLE+LYED+D+IALNKP 
Sbjct: 58   QRIRNGQITVDGEVVRDSDTILRVGSELVYHRLPWGEPDAPYLLEVLYEDDDMIALNKPG 117

Query: 421  GLQVLPGGLFQQRTVLTQLQ-RHADNLTASGYQEPHPVPVHRLGRGTSGVLLCAKTKIAK 597
            GLQVLPGGLFQQRTVLTQL  R +        Q+ H VPVHRLGRGTSG+LLCAKTK AK
Sbjct: 118  GLQVLPGGLFQQRTVLTQLLWRESQKFDHLACQKSHLVPVHRLGRGTSGILLCAKTKHAK 177

Query: 598  SRLAAFFADGTSAVGVCRMNDTQQKATRNITKLYRALASGVIIEDEVFIDQPIGLVKYPG 777
            ++LAA+FADGTS +G     +T+   TR ITK+YRAL +G+I EDEV + QPIG V+YPG
Sbjct: 178  TQLAAYFADGTSHIGDDSTTNTKLHTTRKITKIYRALVTGIICEDEVIVKQPIGTVRYPG 237

Query: 778  VAKGLYVASPSGKPALSKVVVLERNLLSNSTLVQVEIQSGRPHQIRIHLSFIGHPLVGDP 957
            VAKGLY+ASP+GKPALSKV VL+R++  N T+VQVEIQSGRPHQIRIHLSFIGHPL+GDP
Sbjct: 238  VAKGLYIASPAGKPALSKVEVLDRDIQKNHTIVQVEIQSGRPHQIRIHLSFIGHPLLGDP 297

Query: 958  LYSTDGQPKFSDHESVDESFAQDGGYERPEKPVPGDCGYHLHAHHVVFSHPLTNEINEIS 1137
            LY   GQPK    + VDESFA DGG++RP KPVPGDCGY+LHAH VV SHP +NE+ +I+
Sbjct: 298  LYVAGGQPKCLGSDLVDESFADDGGFKRPTKPVPGDCGYNLHAHQVVLSHPSSNEVIKIT 357

Query: 1138 APLPLNLHTVEE 1173
            APLPL L T EE
Sbjct: 358  APLPLVLRTREE 369



 Score = 64.7 bits (156), Expect(2) = e-132
 Identities = 27/44 (61%), Positives = 35/44 (79%)
 Frame = +2

Query: 113 SFGEPWPEFNDGIYYRDLLRPSDAGATLIDFYSRKYKSSAPLHG 244
           +FG PWP+ NDG+ Y D+++ SD+  TLI+FYS KYKSSAPL G
Sbjct: 12  TFGLPWPDLNDGLSYNDVVKSSDSELTLIEFYSSKYKSSAPLQG 55


>ref|XP_006485880.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X2 [Citrus
            sinensis] gi|568865018|ref|XP_006485881.1| PREDICTED: RNA
            pseudouridine synthase 5-like isoform X3 [Citrus
            sinensis]
          Length = 389

 Score =  434 bits (1115), Expect(2) = e-131
 Identities = 220/330 (66%), Positives = 257/330 (77%), Gaps = 2/330 (0%)
 Frame = +1

Query: 241  RRIHNKQITIDGCVVTDPKIILRGGEELVYHRLPWKEPDAPYLLEILYEDNDVIALNKPS 420
            +RI N QIT+DG VV DP IIL  G ELVYHRLPWKEPD PYLLE+ YED+D+IALNKPS
Sbjct: 58   QRIQNGQITVDGRVVNDPNIILSAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPS 117

Query: 421  GLQVLPGGLFQQRTVLTQLQRHADNLTAS-GYQEPHPVPVHRLGRGTSGVLLCAKTKIAK 597
            GLQVLPGGLFQQRTVL QLQ  A   ++S   Q  HPVPVHRLGRGTSG+LLCAKTK+AK
Sbjct: 118  GLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAK 177

Query: 598  SRLAAFFADGTSAVGVCRMNDTQQKATRNITKLYRALASGVIIEDEVFIDQPIGLVKYPG 777
            + +AA+FAD TS V     N   + + R ITK+YRAL  G++ ED+V I QPIG+V+YPG
Sbjct: 178  TCIAAYFADKTSVVDAD--NTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPG 235

Query: 778  VAKGLYVASPSGKPALSKVVVLERNLLSNSTLVQVEIQSGRPHQIRIHLSFIGHPLVGDP 957
            VAKGLYVASPSGKPALSKV VLER++  N TLVQVEIQSGRPHQIRIHL+F+GHPL+GDP
Sbjct: 236  VAKGLYVASPSGKPALSKVDVLERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDP 295

Query: 958  LYSTDGQPKFSDHESVDESFAQDGGYERPEKPVPGDCGYHLHAHHVVFSHPLTNEINEIS 1137
            LY   GQPK  D E  D +FAQDGGYERP  PVPGDCGY+LHA+ +  SHP TNE+ +I+
Sbjct: 296  LYVAGGQPKSFDSEFADGTFAQDGGYERPVNPVPGDCGYYLHAYQLFLSHPTTNEVIKIT 355

Query: 1138 APLPLNLHTVEESK-AKKVL*EQRLAGVSI 1224
            APLP  L T EE +   K +  +R+ G+ I
Sbjct: 356  APLPSVLKTREEGREVDKSVGSERIRGIHI 385



 Score = 65.1 bits (157), Expect(2) = e-131
 Identities = 26/43 (60%), Positives = 35/43 (81%)
 Frame = +2

Query: 116 FGEPWPEFNDGIYYRDLLRPSDAGATLIDFYSRKYKSSAPLHG 244
           FGEPWP+ N+G+ Y D++ PSD+  TLI+FYS K+K+SAPL G
Sbjct: 13  FGEPWPQLNEGLLYNDVVSPSDSKLTLIEFYSTKHKNSAPLQG 55


>ref|XP_004233537.1| PREDICTED: RNA pseudourine synthase 5-like [Solanum lycopersicum]
          Length = 402

 Score =  430 bits (1105), Expect(2) = e-131
 Identities = 218/318 (68%), Positives = 255/318 (80%), Gaps = 2/318 (0%)
 Frame = +1

Query: 241  RRIHNKQITIDGCVVTDPKIILRGGEELVYHRLPWKEPDAPYLLEILYEDNDVIALNKPS 420
            +RI NKQITIDG VV  P   LR G ELVYHRLPW+EPDAPYLLE+L+ED+ +I +NKPS
Sbjct: 82   QRIQNKQITIDGKVVILPDTELRAGAELVYHRLPWREPDAPYLLEVLFEDDYLIVVNKPS 141

Query: 421  GLQVLPGGLFQQRTVLTQLQRHADNLT--ASGYQEPHPVPVHRLGRGTSGVLLCAKTKIA 594
            GLQVLPGGL+QQRTVLTQLQ HA  LT  +SG Q+ HPVPVHRLGRGTSG+LLCAKTK+ 
Sbjct: 142  GLQVLPGGLYQQRTVLTQLQWHACKLTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKLC 201

Query: 595  KSRLAAFFADGTSAVGVCRMNDTQQKATRNITKLYRALASGVIIEDEVFIDQPIGLVKYP 774
            KSRLAA+FA+GTS V   +  +++    R I K+YRAL SGV+  DE  I QPIG +KYP
Sbjct: 202  KSRLAAYFAEGTSVVEE-KCTNSECNTMRKICKIYRALVSGVMDMDEAVIKQPIGTIKYP 260

Query: 775  GVAKGLYVASPSGKPALSKVVVLERNLLSNSTLVQVEIQSGRPHQIRIHLSFIGHPLVGD 954
            GVAKGLYVASPSGKPALS V VLER+  SN TLVQVEIQSGRPHQIRIHLSFIG+PL+GD
Sbjct: 261  GVAKGLYVASPSGKPALSSVRVLERDSESNCTLVQVEIQSGRPHQIRIHLSFIGYPLIGD 320

Query: 955  PLYSTDGQPKFSDHESVDESFAQDGGYERPEKPVPGDCGYHLHAHHVVFSHPLTNEINEI 1134
            PLY + GQPK    E +DESF +DGGY+RPE PVPGDCGY+LHAH +   HP+TNE+ +I
Sbjct: 321  PLYVSGGQPKCFHPELLDESFEKDGGYQRPENPVPGDCGYNLHAHQIGLIHPITNELIKI 380

Query: 1135 SAPLPLNLHTVEESKAKK 1188
            +APLP  L T +E +A +
Sbjct: 381  TAPLPAILQTRDEREANQ 398



 Score = 68.6 bits (166), Expect(2) = e-131
 Identities = 28/43 (65%), Positives = 36/43 (83%)
 Frame = +2

Query: 116 FGEPWPEFNDGIYYRDLLRPSDAGATLIDFYSRKYKSSAPLHG 244
           FG PWP+ N+G+ Y D++RP+DAG TLI+FY RKYK+SAPL G
Sbjct: 37  FGVPWPQRNEGLSYHDIVRPTDAGLTLIEFYFRKYKNSAPLQG 79


>ref|XP_002312025.1| hypothetical protein POPTR_0008s04160g [Populus trichocarpa]
            gi|222851845|gb|EEE89392.1| hypothetical protein
            POPTR_0008s04160g [Populus trichocarpa]
          Length = 377

 Score =  434 bits (1117), Expect(2) = e-131
 Identities = 216/315 (68%), Positives = 254/315 (80%), Gaps = 2/315 (0%)
 Frame = +1

Query: 241  RRIHNKQITIDGCVVTDPKIILRGGEELVYHRLPWKEPDAPYLLEILYEDNDVIALNKPS 420
            +RIHN QITIDG VV +PK ILR G ELVYHRLPW+EPDAPYLL++LYED+D++ALNKP 
Sbjct: 60   QRIHNGQITIDGEVVKEPKAILRDGMELVYHRLPWREPDAPYLLQVLYEDDDMVALNKPP 119

Query: 421  GLQVLPGGLFQQRTVLTQLQRHADNLTAS-GYQEPHPVPVHRLGRGTSGVLLCAKTKIAK 597
            GLQVLPGGLFQQRTVL QLQ  A   ++S   Q  HPVPVHRLGRGTSG+LLCAKTK+AK
Sbjct: 120  GLQVLPGGLFQQRTVLMQLQWRASKGSSSLAIQGSHPVPVHRLGRGTSGILLCAKTKVAK 179

Query: 598  SRLAAFFADGTSAVGVCRMNDTQQKATRNITKLYRALASGVIIEDEVFIDQPIGLVKYPG 777
            + LAA+FADGTS +G     + +Q   R I+K+YRAL +G++ +D++ I QPIG ++YPG
Sbjct: 180  TSLAAYFADGTSLIGDSSNANMEQSKRRKISKIYRALVNGILNQDKIIIKQPIGTMRYPG 239

Query: 778  VAKGLYVASPSGKPALSKVVVLERNLLSNSTLVQVEIQSGRPHQIRIHLSFIGHPLVGDP 957
            VAKGLYVASPSGKPALSKV VLER+   N TLVQVEI+SGRPHQIRIHLSFIGHPL+GDP
Sbjct: 240  VAKGLYVASPSGKPALSKVEVLERDSQLNQTLVQVEIESGRPHQIRIHLSFIGHPLLGDP 299

Query: 958  LYSTDGQPKFSDHESVDESFAQDGGYERPEKPVPGDCGYHLHAHHVVFSHPLTNE-INEI 1134
            LY   GQP   D E  DESFA+DGGYERP KPVPGDCGY+LHAH +V SHP  NE + +I
Sbjct: 300  LYDVGGQPMCFDSEHEDESFAEDGGYERPAKPVPGDCGYYLHAHQLVLSHPTKNEQVIKI 359

Query: 1135 SAPLPLNLHTVEESK 1179
            +APLP  L T  E++
Sbjct: 360  TAPLPSILRTQAETE 374



 Score = 62.8 bits (151), Expect(2) = e-131
 Identities = 27/47 (57%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
 Frame = +2

Query: 107 MVSFGEPWPEFNDGIYYRDLLRPS-DAGATLIDFYSRKYKSSAPLHG 244
           + SFG PWP+ N+G++Y D++  S D+G TLI FYS KYK+SAPL G
Sbjct: 11  LCSFGSPWPDLNEGLFYNDVVSTSSDSGLTLIHFYSSKYKNSAPLQG 57


>emb|CBI31488.3| unnamed protein product [Vitis vinifera]
          Length = 347

 Score =  434 bits (1115), Expect(2) = e-131
 Identities = 212/295 (71%), Positives = 247/295 (83%), Gaps = 1/295 (0%)
 Frame = +1

Query: 241  RRIHNKQITIDGCVVTDPKIILRGGEELVYHRLPWKEPDAPYLLEILYEDNDVIALNKPS 420
            +RI+  QIT+DG VVT+PK ILR G +LVYHRLPW+EPDAPYLLEILYED+DVIALNKPS
Sbjct: 50   QRINKGQITVDGTVVTEPKTILRAGSKLVYHRLPWQEPDAPYLLEILYEDDDVIALNKPS 109

Query: 421  GLQVLPGGLFQQRTVLTQLQRHADNLTA-SGYQEPHPVPVHRLGRGTSGVLLCAKTKIAK 597
            GLQVLPGGLFQQRTVLTQLQ  A+   +    QE H VPVHRLGRGTSG+LLCAKTK+AK
Sbjct: 110  GLQVLPGGLFQQRTVLTQLQWRANKQNSLPACQESHSVPVHRLGRGTSGILLCAKTKLAK 169

Query: 598  SRLAAFFADGTSAVGVCRMNDTQQKATRNITKLYRALASGVIIEDEVFIDQPIGLVKYPG 777
            +RLAA+FADGTS VG  R  D + +  R I+K+YRAL +G++ +DE+ I+QPIG+V+YPG
Sbjct: 170  TRLAAYFADGTSVVGGNRDADMKSRTMRKISKIYRALVNGILDKDEIVIEQPIGMVQYPG 229

Query: 778  VAKGLYVASPSGKPALSKVVVLERNLLSNSTLVQVEIQSGRPHQIRIHLSFIGHPLVGDP 957
            VAKGLYVASPSGKPALSKV +LER++  +  +VQVEIQSGRPHQIRIHLSFIGHPL+GDP
Sbjct: 230  VAKGLYVASPSGKPALSKVSILERDVQGDHMIVQVEIQSGRPHQIRIHLSFIGHPLLGDP 289

Query: 958  LYSTDGQPKFSDHESVDESFAQDGGYERPEKPVPGDCGYHLHAHHVVFSHPLTNE 1122
            LY   GQPK  D E  +ES+A DGGY+RP KPVPGDCGYHLHAH +V SHP TNE
Sbjct: 290  LYVPGGQPKCCDAEFTNESYALDGGYQRPVKPVPGDCGYHLHAHQLVLSHPTTNE 344



 Score = 63.5 bits (153), Expect(2) = e-131
 Identities = 26/44 (59%), Positives = 35/44 (79%)
 Frame = +2

Query: 113 SFGEPWPEFNDGIYYRDLLRPSDAGATLIDFYSRKYKSSAPLHG 244
           +FG PWP+FNDG+ Y D++  SD+  TLID+YS K+K+SAPL G
Sbjct: 4   TFGVPWPDFNDGLTYNDVVSASDSELTLIDYYSSKHKNSAPLQG 47


>ref|XP_002276664.1| PREDICTED: RNA pseudourine synthase 5-like [Vitis vinifera]
          Length = 348

 Score =  432 bits (1111), Expect(2) = e-131
 Identities = 212/296 (71%), Positives = 249/296 (84%), Gaps = 2/296 (0%)
 Frame = +1

Query: 241  RRIHNKQITIDGCVVTDPKIILRGGEELVYHRLPWKEPDAPYLLEILYEDNDVIALNKPS 420
            +RI+  QIT+DG VVT+PK ILR G +LVYHRLPW+EPDAPYLLEILYED+DVIALNKPS
Sbjct: 50   QRINKGQITVDGTVVTEPKTILRAGSKLVYHRLPWQEPDAPYLLEILYEDDDVIALNKPS 109

Query: 421  GLQVLPGGLFQQRTVLTQLQRHADNLTA-SGYQEPHPVPVHRLGRGTSGVLLCAKTKIAK 597
            GLQVLPGGLFQQRTVLTQLQ  A+   +    QE H VPVHRLGRGTSG+LLCAKTK+AK
Sbjct: 110  GLQVLPGGLFQQRTVLTQLQWRANKQNSLPACQESHSVPVHRLGRGTSGILLCAKTKLAK 169

Query: 598  SRLAAFFADGTSAVGVCRMN-DTQQKATRNITKLYRALASGVIIEDEVFIDQPIGLVKYP 774
            +RLAA+FADGTS VG  R++ D + +  R I+K+YRAL +G++ +DE+ I+QPIG+V+YP
Sbjct: 170  TRLAAYFADGTSVVGGNRLDADMKSRTMRKISKIYRALVNGILDKDEIVIEQPIGMVQYP 229

Query: 775  GVAKGLYVASPSGKPALSKVVVLERNLLSNSTLVQVEIQSGRPHQIRIHLSFIGHPLVGD 954
            GVAKGLYVASPSGKPALSKV +LER++  +  +VQVEIQSGRPHQIRIHLSFIGHPL+GD
Sbjct: 230  GVAKGLYVASPSGKPALSKVSILERDVQGDHMIVQVEIQSGRPHQIRIHLSFIGHPLLGD 289

Query: 955  PLYSTDGQPKFSDHESVDESFAQDGGYERPEKPVPGDCGYHLHAHHVVFSHPLTNE 1122
            PLY   GQPK  D E  +ES+A DGGY+RP KPVPGDCGYHLHAH +V SHP TNE
Sbjct: 290  PLYVPGGQPKCCDAEFTNESYALDGGYQRPVKPVPGDCGYHLHAHQLVLSHPTTNE 345



 Score = 63.5 bits (153), Expect(2) = e-131
 Identities = 26/44 (59%), Positives = 35/44 (79%)
 Frame = +2

Query: 113 SFGEPWPEFNDGIYYRDLLRPSDAGATLIDFYSRKYKSSAPLHG 244
           +FG PWP+FNDG+ Y D++  SD+  TLID+YS K+K+SAPL G
Sbjct: 4   TFGVPWPDFNDGLTYNDVVSASDSELTLIDYYSSKHKNSAPLQG 47


>ref|XP_006485879.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X1 [Citrus
            sinensis]
          Length = 390

 Score =  429 bits (1103), Expect(2) = e-130
 Identities = 220/331 (66%), Positives = 257/331 (77%), Gaps = 3/331 (0%)
 Frame = +1

Query: 241  RRIHNKQITIDGCVVTDPKIILRGGEELVYHRLPWKEPDAPYLLEILYEDNDVIALNKPS 420
            +RI N QIT+DG VV DP IIL  G ELVYHRLPWKEPD PYLLE+ YED+D+IALNKPS
Sbjct: 58   QRIQNGQITVDGRVVNDPNIILSAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPS 117

Query: 421  GLQVLPGGLFQQRTVLTQLQRHADNLTAS-GYQEPHPVPVHRLGRGTSGVLLCAKTKIAK 597
            GLQVLPGGLFQQRTVL QLQ  A   ++S   Q  HPVPVHRLGRGTSG+LLCAKTK+AK
Sbjct: 118  GLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAK 177

Query: 598  SRLAAFFADGTSAVGVCRMNDTQQKATRNITKLYRALASGVIIEDEVFIDQPIGLVKYPG 777
            + +AA+FAD TS V     N   + + R ITK+YRAL  G++ ED+V I QPIG+V+YPG
Sbjct: 178  TCIAAYFADKTSVVDAD--NTVMELSQRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPG 235

Query: 778  VAKGLYVASPSGKPALSKVVVLERNLLSNSTLVQ-VEIQSGRPHQIRIHLSFIGHPLVGD 954
            VAKGLYVASPSGKPALSKV VLER++  N TLVQ VEIQSGRPHQIRIHL+F+GHPL+GD
Sbjct: 236  VAKGLYVASPSGKPALSKVDVLERDVQRNCTLVQQVEIQSGRPHQIRIHLAFLGHPLLGD 295

Query: 955  PLYSTDGQPKFSDHESVDESFAQDGGYERPEKPVPGDCGYHLHAHHVVFSHPLTNEINEI 1134
            PLY   GQPK  D E  D +FAQDGGYERP  PVPGDCGY+LHA+ +  SHP TNE+ +I
Sbjct: 296  PLYVAGGQPKSFDSEFADGTFAQDGGYERPVNPVPGDCGYYLHAYQLFLSHPTTNEVIKI 355

Query: 1135 SAPLPLNLHTVEESK-AKKVL*EQRLAGVSI 1224
            +APLP  L T EE +   K +  +R+ G+ I
Sbjct: 356  TAPLPSVLKTREEGREVDKSVGSERIRGIHI 386



 Score = 65.1 bits (157), Expect(2) = e-130
 Identities = 26/43 (60%), Positives = 35/43 (81%)
 Frame = +2

Query: 116 FGEPWPEFNDGIYYRDLLRPSDAGATLIDFYSRKYKSSAPLHG 244
           FGEPWP+ N+G+ Y D++ PSD+  TLI+FYS K+K+SAPL G
Sbjct: 13  FGEPWPQLNEGLLYNDVVSPSDSKLTLIEFYSTKHKNSAPLQG 55


>ref|XP_006346977.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X3 [Solanum
            tuberosum]
          Length = 374

 Score =  428 bits (1101), Expect(2) = e-130
 Identities = 217/316 (68%), Positives = 254/316 (80%), Gaps = 2/316 (0%)
 Frame = +1

Query: 241  RRIHNKQITIDGCVVTDPKIILRGGEELVYHRLPWKEPDAPYLLEILYEDNDVIALNKPS 420
            +RI NKQITIDG VV  P   LR G ELVYHRLPW+EPDAPYLLE+L++D+ +I +NKPS
Sbjct: 59   QRIQNKQITIDGKVVILPDTELRAGAELVYHRLPWREPDAPYLLEVLFQDDYLIVVNKPS 118

Query: 421  GLQVLPGGLFQQRTVLTQLQRHA--DNLTASGYQEPHPVPVHRLGRGTSGVLLCAKTKIA 594
            GLQVLPGGL+QQRTVLTQLQ HA     T+SG Q+ HPVPVHRLGRGTSG+LLCAKTK+ 
Sbjct: 119  GLQVLPGGLYQQRTVLTQLQWHACKPTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKLC 178

Query: 595  KSRLAAFFADGTSAVGVCRMNDTQQKATRNITKLYRALASGVIIEDEVFIDQPIGLVKYP 774
            KSRLAA+FA+GTS V   +  +++    R I K+YRAL SGV+  DEV I QPIG +KYP
Sbjct: 179  KSRLAAYFAEGTSVVED-KCTNSECNTMRKICKIYRALVSGVMDMDEVVIKQPIGTIKYP 237

Query: 775  GVAKGLYVASPSGKPALSKVVVLERNLLSNSTLVQVEIQSGRPHQIRIHLSFIGHPLVGD 954
            GVAKGLYVASPSGKPALS V VLER+  +N TLVQVEIQSGRPHQIRIHLSFIG+PL+GD
Sbjct: 238  GVAKGLYVASPSGKPALSSVRVLERDSENNCTLVQVEIQSGRPHQIRIHLSFIGYPLIGD 297

Query: 955  PLYSTDGQPKFSDHESVDESFAQDGGYERPEKPVPGDCGYHLHAHHVVFSHPLTNEINEI 1134
            PLY + GQPK    E +DESF +DGGY+RPE PVPGDCGY+LHAH +   HP+TNE+ +I
Sbjct: 298  PLYVSGGQPKCFHPELMDESFEKDGGYQRPENPVPGDCGYNLHAHQIGLIHPITNELIKI 357

Query: 1135 SAPLPLNLHTVEESKA 1182
            +APLP  L T EE +A
Sbjct: 358  TAPLPAILQTREEREA 373



 Score = 65.5 bits (158), Expect(2) = e-130
 Identities = 27/43 (62%), Positives = 34/43 (79%)
 Frame = +2

Query: 116 FGEPWPEFNDGIYYRDLLRPSDAGATLIDFYSRKYKSSAPLHG 244
           FG  WPE N+G+ Y D++RP+DAG  LI+FY RKYK+SAPL G
Sbjct: 14  FGVSWPELNEGLTYHDIVRPTDAGLMLIEFYFRKYKNSAPLQG 56


>ref|XP_004143830.1| PREDICTED: RNA pseudourine synthase 5-like [Cucumis sativus]
          Length = 371

 Score =  424 bits (1091), Expect(2) = e-129
 Identities = 211/313 (67%), Positives = 254/313 (81%)
 Frame = +1

Query: 241  RRIHNKQITIDGCVVTDPKIILRGGEELVYHRLPWKEPDAPYLLEILYEDNDVIALNKPS 420
            +RI N+QITIDG V+TDP+ ILR G +LVY RLPWKEPD PYLLEILYEDN++IALNKPS
Sbjct: 55   QRIKNEQITIDGEVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPS 114

Query: 421  GLQVLPGGLFQQRTVLTQLQRHADNLTASGYQEPHPVPVHRLGRGTSGVLLCAKTKIAKS 600
            GLQVLPGG+FQQRTVLTQLQ  +   + S  +E HPVPVHRLGRGTSG+LLCAKTK+A++
Sbjct: 115  GLQVLPGGVFQQRTVLTQLQWWSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLART 174

Query: 601  RLAAFFADGTSAVGVCRMNDTQQKATRNITKLYRALASGVIIEDEVFIDQPIGLVKYPGV 780
            + AA+FA+GTS+V   R +  ++   R I+K+YRAL +G+I +DEV +DQPIG ++YPGV
Sbjct: 175  QFAAYFAEGTSSVRRNRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGV 234

Query: 781  AKGLYVASPSGKPALSKVVVLERNLLSNSTLVQVEIQSGRPHQIRIHLSFIGHPLVGDPL 960
            A+GLYVA+PSGKPA SKV VLER+  S  TLVQVEIQSGRPHQIRIHLS IGHPLVGDPL
Sbjct: 235  AQGLYVATPSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLVGDPL 294

Query: 961  YSTDGQPKFSDHESVDESFAQDGGYERPEKPVPGDCGYHLHAHHVVFSHPLTNEINEISA 1140
            Y   GQP     E V++SFA+DGGYERP KPVPGDCGY+LHAH ++  HP TNE+ +I A
Sbjct: 295  YVAGGQPNCLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEVVKIIA 354

Query: 1141 PLPLNLHTVEESK 1179
            PLP  L T  E++
Sbjct: 355  PLPPILRTRIEAE 367



 Score = 64.7 bits (156), Expect(2) = e-129
 Identities = 26/42 (61%), Positives = 34/42 (80%)
 Frame = +2

Query: 119 GEPWPEFNDGIYYRDLLRPSDAGATLIDFYSRKYKSSAPLHG 244
           G PWP+ NDG++Y D+++P D+G +LI FYS KYKSSAPL G
Sbjct: 11  GIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEG 52


>ref|XP_004157313.1| PREDICTED: RNA pseudourine synthase 5-like [Cucumis sativus]
          Length = 371

 Score =  423 bits (1088), Expect(2) = e-128
 Identities = 210/313 (67%), Positives = 254/313 (81%)
 Frame = +1

Query: 241  RRIHNKQITIDGCVVTDPKIILRGGEELVYHRLPWKEPDAPYLLEILYEDNDVIALNKPS 420
            +RI N+QITIDG V+TDP+ ILR G +LVY RLPWKEPD PYLLEILYEDN++IALNKPS
Sbjct: 55   QRIKNEQITIDGEVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPS 114

Query: 421  GLQVLPGGLFQQRTVLTQLQRHADNLTASGYQEPHPVPVHRLGRGTSGVLLCAKTKIAKS 600
            GLQVLPGG+FQQRTVLTQLQ  +   + S  +E HPVPVHRLGRGTSG+LLCAKTK+A++
Sbjct: 115  GLQVLPGGVFQQRTVLTQLQWWSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLART 174

Query: 601  RLAAFFADGTSAVGVCRMNDTQQKATRNITKLYRALASGVIIEDEVFIDQPIGLVKYPGV 780
            + AA+FA+GTS+V   R +  ++   R I+K+YRAL +G+I +DEV +DQPIG ++YPGV
Sbjct: 175  QFAAYFAEGTSSVRRNRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGV 234

Query: 781  AKGLYVASPSGKPALSKVVVLERNLLSNSTLVQVEIQSGRPHQIRIHLSFIGHPLVGDPL 960
            A+GLYVA+PSGKPA SKV VLER+  S  TLVQVEIQSGRPHQIRIHLS IGHPL+GDPL
Sbjct: 235  AQGLYVATPSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPL 294

Query: 961  YSTDGQPKFSDHESVDESFAQDGGYERPEKPVPGDCGYHLHAHHVVFSHPLTNEINEISA 1140
            Y   GQP     E V++SFA+DGGYERP KPVPGDCGY+LHAH ++  HP TNE+ +I A
Sbjct: 295  YVAGGQPNCLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEVVKIIA 354

Query: 1141 PLPLNLHTVEESK 1179
            PLP  L T  E++
Sbjct: 355  PLPPILRTRIEAE 367



 Score = 64.7 bits (156), Expect(2) = e-128
 Identities = 26/42 (61%), Positives = 34/42 (80%)
 Frame = +2

Query: 119 GEPWPEFNDGIYYRDLLRPSDAGATLIDFYSRKYKSSAPLHG 244
           G PWP+ NDG++Y D+++P D+G +LI FYS KYKSSAPL G
Sbjct: 11  GIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEG 52


>ref|XP_006346975.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X1 [Solanum
            tuberosum] gi|565360441|ref|XP_006346976.1| PREDICTED:
            RNA pseudouridine synthase 5-like isoform X2 [Solanum
            tuberosum]
          Length = 379

 Score =  422 bits (1085), Expect(2) = e-128
 Identities = 217/321 (67%), Positives = 254/321 (79%), Gaps = 7/321 (2%)
 Frame = +1

Query: 241  RRIHNKQITIDGCVVTDPKIIL-----RGGEELVYHRLPWKEPDAPYLLEILYEDNDVIA 405
            +RI NKQITIDG VV  P   L     R G ELVYHRLPW+EPDAPYLLE+L++D+ +I 
Sbjct: 59   QRIQNKQITIDGKVVILPDTELSFWMCRAGAELVYHRLPWREPDAPYLLEVLFQDDYLIV 118

Query: 406  LNKPSGLQVLPGGLFQQRTVLTQLQRHA--DNLTASGYQEPHPVPVHRLGRGTSGVLLCA 579
            +NKPSGLQVLPGGL+QQRTVLTQLQ HA     T+SG Q+ HPVPVHRLGRGTSG+LLCA
Sbjct: 119  VNKPSGLQVLPGGLYQQRTVLTQLQWHACKPTTTSSGCQKTHPVPVHRLGRGTSGILLCA 178

Query: 580  KTKIAKSRLAAFFADGTSAVGVCRMNDTQQKATRNITKLYRALASGVIIEDEVFIDQPIG 759
            KTK+ KSRLAA+FA+GTS V   +  +++    R I K+YRAL SGV+  DEV I QPIG
Sbjct: 179  KTKLCKSRLAAYFAEGTSVVED-KCTNSECNTMRKICKIYRALVSGVMDMDEVVIKQPIG 237

Query: 760  LVKYPGVAKGLYVASPSGKPALSKVVVLERNLLSNSTLVQVEIQSGRPHQIRIHLSFIGH 939
             +KYPGVAKGLYVASPSGKPALS V VLER+  +N TLVQVEIQSGRPHQIRIHLSFIG+
Sbjct: 238  TIKYPGVAKGLYVASPSGKPALSSVRVLERDSENNCTLVQVEIQSGRPHQIRIHLSFIGY 297

Query: 940  PLVGDPLYSTDGQPKFSDHESVDESFAQDGGYERPEKPVPGDCGYHLHAHHVVFSHPLTN 1119
            PL+GDPLY + GQPK    E +DESF +DGGY+RPE PVPGDCGY+LHAH +   HP+TN
Sbjct: 298  PLIGDPLYVSGGQPKCFHPELMDESFEKDGGYQRPENPVPGDCGYNLHAHQIGLIHPITN 357

Query: 1120 EINEISAPLPLNLHTVEESKA 1182
            E+ +I+APLP  L T EE +A
Sbjct: 358  ELIKITAPLPAILQTREEREA 378



 Score = 65.5 bits (158), Expect(2) = e-128
 Identities = 27/43 (62%), Positives = 34/43 (79%)
 Frame = +2

Query: 116 FGEPWPEFNDGIYYRDLLRPSDAGATLIDFYSRKYKSSAPLHG 244
           FG  WPE N+G+ Y D++RP+DAG  LI+FY RKYK+SAPL G
Sbjct: 14  FGVSWPELNEGLTYHDIVRPTDAGLMLIEFYFRKYKNSAPLQG 56


>ref|XP_006346978.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X4 [Solanum
            tuberosum]
          Length = 349

 Score =  404 bits (1039), Expect(2) = e-123
 Identities = 202/292 (69%), Positives = 238/292 (81%), Gaps = 2/292 (0%)
 Frame = +1

Query: 313  GEELVYHRLPWKEPDAPYLLEILYEDNDVIALNKPSGLQVLPGGLFQQRTVLTQLQRHA- 489
            G ELVYHRLPW+EPDAPYLLE+L++D+ +I +NKPSGLQVLPGGL+QQRTVLTQLQ HA 
Sbjct: 58   GAELVYHRLPWREPDAPYLLEVLFQDDYLIVVNKPSGLQVLPGGLYQQRTVLTQLQWHAC 117

Query: 490  -DNLTASGYQEPHPVPVHRLGRGTSGVLLCAKTKIAKSRLAAFFADGTSAVGVCRMNDTQ 666
                T+SG Q+ HPVPVHRLGRGTSG+LLCAKTK+ KSRLAA+FA+GTS V   +  +++
Sbjct: 118  KPTTTSSGCQKTHPVPVHRLGRGTSGILLCAKTKLCKSRLAAYFAEGTSVVED-KCTNSE 176

Query: 667  QKATRNITKLYRALASGVIIEDEVFIDQPIGLVKYPGVAKGLYVASPSGKPALSKVVVLE 846
                R I K+YRAL SGV+  DEV I QPIG +KYPGVAKGLYVASPSGKPALS V VLE
Sbjct: 177  CNTMRKICKIYRALVSGVMDMDEVVIKQPIGTIKYPGVAKGLYVASPSGKPALSSVRVLE 236

Query: 847  RNLLSNSTLVQVEIQSGRPHQIRIHLSFIGHPLVGDPLYSTDGQPKFSDHESVDESFAQD 1026
            R+  +N TLVQVEIQSGRPHQIRIHLSFIG+PL+GDPLY + GQPK    E +DESF +D
Sbjct: 237  RDSENNCTLVQVEIQSGRPHQIRIHLSFIGYPLIGDPLYVSGGQPKCFHPELMDESFEKD 296

Query: 1027 GGYERPEKPVPGDCGYHLHAHHVVFSHPLTNEINEISAPLPLNLHTVEESKA 1182
            GGY+RPE PVPGDCGY+LHAH +   HP+TNE+ +I+APLP  L T EE +A
Sbjct: 297  GGYQRPENPVPGDCGYNLHAHQIGLIHPITNELIKITAPLPAILQTREEREA 348



 Score = 65.5 bits (158), Expect(2) = e-123
 Identities = 27/43 (62%), Positives = 34/43 (79%)
 Frame = +2

Query: 116 FGEPWPEFNDGIYYRDLLRPSDAGATLIDFYSRKYKSSAPLHG 244
           FG  WPE N+G+ Y D++RP+DAG  LI+FY RKYK+SAPL G
Sbjct: 14  FGVSWPELNEGLTYHDIVRPTDAGLMLIEFYFRKYKNSAPLQG 56


>ref|XP_006651272.1| PREDICTED: RNA pseudouridine synthase 5-like [Oryza brachyantha]
          Length = 396

 Score =  402 bits (1034), Expect(2) = e-122
 Identities = 211/326 (64%), Positives = 248/326 (76%), Gaps = 9/326 (2%)
 Frame = +1

Query: 241  RRIHNKQITIDGCVVTDPKIILRGGEELVYHRLPWKEPDAPYLLEILYEDNDVIALNKPS 420
            +RI N QIT+DG VVTDP + LR G +L+YHRLPW+EP AP+LL +LYED+D+IALNKPS
Sbjct: 70   KRIRNGQITVDGEVVTDPDMTLRQGSKLIYHRLPWQEPFAPHLLGVLYEDDDMIALNKPS 129

Query: 421  GLQVLPGGLFQQRTVLTQLQRHADNLTASGYQ-----EPHPVPVHRLGRGTSGVLLCAKT 585
            GLQVLP GLFQQRTVL QLQ     + +S        + HPVPVHRLGRGTSG+LLCAKT
Sbjct: 130  GLQVLPKGLFQQRTVLAQLQMKDWKIPSSFCSKQKDVQSHPVPVHRLGRGTSGLLLCAKT 189

Query: 586  KIAKSRLAAFFADGTSAVGVCRMNDTQQKATRNITKLYRALASGVIIEDEVFIDQPIGLV 765
            K+AK+RLAA+FA+GT+  G  R ++T     R I+K YRAL +G++  DEV I QPIGLV
Sbjct: 190  KLAKARLAAYFAEGTTNAGKSR-DETDMCKVRKISKFYRALVTGILENDEVMITQPIGLV 248

Query: 766  KYPGVAKGLYVASPSGKPALSKVVVLERNLLSNSTLVQVEIQSGRPHQIRIHLSFIGHPL 945
             YPGVA+GLY A  SGKPA+SKV VLER    N TLVQVEI SGRPHQIRIHL+ IGHPL
Sbjct: 249  HYPGVAEGLYAACSSGKPAMSKVSVLERLEHRNQTLVQVEIHSGRPHQIRIHLACIGHPL 308

Query: 946  VGDPLYSTDGQPKFSDHE--SVDESFAQDGGYERPEKPVPGDCGYHLHAHHVVFSHPLTN 1119
            V DPLY   GQPKF + E  S D+SFA DGGYERP +PVPGDCGYHLHAH +V  HP TN
Sbjct: 309  VDDPLYGIGGQPKFDELESSSTDDSFAYDGGYERPLQPVPGDCGYHLHAHWLVLCHPTTN 368

Query: 1120 EINEISAPLPLNLHTVEESK--AKKV 1191
            E+ +I+APLP  L T EE +  AK+V
Sbjct: 369  EMIKITAPLPQILQTREEQQDTAKQV 394



 Score = 65.5 bits (158), Expect(2) = e-122
 Identities = 32/46 (69%), Positives = 35/46 (76%), Gaps = 2/46 (4%)
 Frame = +2

Query: 113 SFGEPWPEFNDGIYYRDLLRPSDAGA--TLIDFYSRKYKSSAPLHG 244
           SFG PWPEFN+GI Y D  R +DAGA  TLI+FYS  YKSSAPL G
Sbjct: 22  SFGRPWPEFNEGISYTDTFRCADAGATMTLIEFYSTTYKSSAPLPG 67


>sp|Q0DST9.2|PUS5_ORYSJ RecName: Full=RNA pseudouridine synthase 5; AltName: Full=RNA
            pseudouridylate synthase 5; AltName: Full=RNA-uridine
            isomerase 5
          Length = 397

 Score =  399 bits (1024), Expect(2) = e-121
 Identities = 204/320 (63%), Positives = 246/320 (76%), Gaps = 7/320 (2%)
 Frame = +1

Query: 241  RRIHNKQITIDGCVVTDPKIILRGGEELVYHRLPWKEPDAPYLLEILYEDNDVIALNKPS 420
            +RI + QIT+DG V TDP +ILR G +LVYHRLPW+EP AP+LL++LYED+D+IALNKPS
Sbjct: 71   KRIRDGQITVDGEVATDPDMILREGSKLVYHRLPWQEPFAPHLLDVLYEDDDMIALNKPS 130

Query: 421  GLQVLPGGLFQQRTVLTQLQRHADNLTASGYQ-----EPHPVPVHRLGRGTSGVLLCAKT 585
            GLQVLP GLFQQRTVL QLQ     + +S        + HPVPVHRLGRGTSG+LLCAKT
Sbjct: 131  GLQVLPKGLFQQRTVLAQLQLKDWKMPSSFCSKRKDAQSHPVPVHRLGRGTSGLLLCAKT 190

Query: 586  KIAKSRLAAFFADGTSAVGVCRMNDTQQKATRNITKLYRALASGVIIEDEVFIDQPIGLV 765
            K+AK++LAA+FA+G +  G  R ++T     R I+K YRAL +G++  DEV I QPIGLV
Sbjct: 191  KLAKAQLAAYFAEGATNAGKSR-DETDICKARKISKFYRALVTGILENDEVMITQPIGLV 249

Query: 766  KYPGVAKGLYVASPSGKPALSKVVVLERNLLSNSTLVQVEIQSGRPHQIRIHLSFIGHPL 945
            +YPGVA+GLY A  SGKPA+SKV VLER  + N TL+QVEI SGRPHQIRIHL++IGHPL
Sbjct: 250  RYPGVAEGLYAACSSGKPAMSKVRVLERLKIHNHTLIQVEIHSGRPHQIRIHLAYIGHPL 309

Query: 946  VGDPLYSTDGQPKFSDHE--SVDESFAQDGGYERPEKPVPGDCGYHLHAHHVVFSHPLTN 1119
            V DPLY   GQPKF + E  S  +SFA DGGYERP +PVPGDCGYHLHAH +V  HP TN
Sbjct: 310  VDDPLYGIGGQPKFDEPEPTSTADSFAYDGGYERPLQPVPGDCGYHLHAHWLVLCHPTTN 369

Query: 1120 EINEISAPLPLNLHTVEESK 1179
            E+ +I+APLP  L T EE +
Sbjct: 370  EMIKITAPLPHILQTREEQQ 389



 Score = 65.1 bits (157), Expect(2) = e-121
 Identities = 32/48 (66%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
 Frame = +2

Query: 107 MVSFGEPWPEFNDGIYYRDLLRPSDAGA--TLIDFYSRKYKSSAPLHG 244
           + SFG PWPEFN+GI Y D  R +DAGA  TLI+FYS  YKSSAPL G
Sbjct: 21  LYSFGTPWPEFNEGISYIDTFRCADAGATTTLIEFYSTSYKSSAPLPG 68