BLASTX nr result
ID: Rehmannia24_contig00021315
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00021315
(797 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004309472.1| PREDICTED: putative ribonuclease H protein A... 131 1e-30
ref|XP_004308214.1| PREDICTED: putative ribonuclease H protein A... 117 9e-26
ref|XP_004309110.1| PREDICTED: putative ribonuclease H protein A... 113 2e-25
gb|EMJ14652.1| hypothetical protein PRUPE_ppa024777mg, partial [... 115 2e-24
ref|YP_008992319.1| hypothetical protein Salmi_Mp055 (mitochondr... 117 6e-24
gb|EXB74531.1| hypothetical protein L484_026228 [Morus notabilis] 102 2e-19
ref|XP_004309966.1| PREDICTED: putative ribonuclease H protein A... 101 3e-19
ref|XP_004292254.1| PREDICTED: putative ribonuclease H protein A... 101 3e-19
ref|XP_004301067.1| PREDICTED: uncharacterized protein LOC101309... 99 2e-18
ref|XP_004308308.1| PREDICTED: uncharacterized protein LOC101295... 96 1e-17
ref|XP_004308354.1| PREDICTED: putative ribonuclease H protein A... 95 2e-17
ref|XP_004289115.1| PREDICTED: putative ribonuclease H protein A... 94 4e-17
ref|XP_004304923.1| PREDICTED: putative ribonuclease H protein A... 94 5e-17
ref|XP_002516681.1| conserved hypothetical protein [Ricinus comm... 91 5e-16
gb|AGV40503.1| hypothetical protein [Phaseolus vulgaris] 87 5e-15
ref|XP_004304990.1| PREDICTED: putative ribonuclease H protein A... 86 2e-14
ref|XP_004289281.1| PREDICTED: putative ribonuclease H protein A... 84 6e-14
ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica... 77 7e-14
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas... 83 1e-13
ref|XP_004305144.1| PREDICTED: putative ribonuclease H protein A... 83 1e-13
>ref|XP_004309472.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 364
Score = 131 bits (329), Expect(2) = 1e-30
Identities = 74/214 (34%), Positives = 107/214 (50%)
Frame = -3
Query: 654 QVAFLWRVAVLSCIWLIWQIRNDLTFNNKTWTVDAATLRFRVLILESSSLDRGCMDNDQH 475
Q+ +W + + +W IW+ RN + +N T VDA + +S L GCM N
Sbjct: 129 QLKEIWLICYTTTLWFIWKARNKMRHDNCTIVVDAVRQLIMGHVKTASKLALGCMSNSLT 188
Query: 474 NLFILRRLRVPRHPRQASKIVQVNWQKPLPGWIKVNTDGSASGALGHLTASXXXXXXXXX 295
L +L++ + P +A +I +VNW PL GWIKVNTDG+ G
Sbjct: 189 ELRVLKKFGLLCRPHRAPRITEVNWHPPLFGWIKVNTDGAWQKTTGKSGYGGIFRDFHGS 248
Query: 294 XXXXXVERCGSGFAFEAELMAAMRAIHYAFAKGWTKLWLESDLVYVVELLRKRSTGVPWR 115
+ +AE+MA ++AI A+ + W +WLE D + V+ L+ VPWR
Sbjct: 249 FLGAFASNLEILNSVDAEVMAVIQAIELAWVRDWEHIWLEVDSIIVLNFLQDPHL-VPWR 307
Query: 114 HLSMWRYTLHLLSQMDLVVSHIFREGNRVADMLS 13
W LH +SQM+ SHIFREGN+VAD L+
Sbjct: 308 LRVGWGNFLHRISQMNFRSSHIFREGNQVADALA 341
Score = 28.9 bits (63), Expect(2) = 1e-30
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 796 CGLCCATIESVGHLFVCCVFVGALW 722
C LC ES+ H+F+ C F +LW
Sbjct: 75 CVLCGRDGESLPHIFLTCSFAASLW 99
>ref|XP_004308214.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 409
Score = 117 bits (294), Expect(2) = 9e-26
Identities = 73/213 (34%), Positives = 101/213 (47%)
Frame = -3
Query: 654 QVAFLWRVAVLSCIWLIWQIRNDLTFNNKTWTVDAATLRFRVLILESSSLDRGCMDNDQH 475
Q+ +W + + +W I + RN + +N T VDA + S L GCM N
Sbjct: 161 QLKEIWLICYTTTLWFIGKARNKIRHDNCTIVVDAVHQLIMGHVKAVSKLASGCMSNSLT 220
Query: 474 NLFILRRLRVPRHPRQASKIVQVNWQKPLPGWIKVNTDGSASGALGHLTASXXXXXXXXX 295
L +L++ + HP QA +I +VNW PL GWIKVNTDG+ G
Sbjct: 221 KLRVLKKFGLLCHPCQALRITKVNWHPPLFGWIKVNTDGAWQKTTGKSGYGGIFRDFHGS 280
Query: 294 XXXXXVERCGSGFAFEAELMAAMRAIHYAFAKGWTKLWLESDLVYVVELLRKRSTGVPWR 115
+ +AE+MA ++AI A+ + W + LE D V+ L VPWR
Sbjct: 281 FLGAFASNLEIPNSVDAEVMAVIQAIELAWVRDWKHILLEVDSAIVLNFLHDPHL-VPWR 339
Query: 114 HLSMWRYTLHLLSQMDLVVSHIFREGNRVADML 16
LH +SQM+ SHIFREGN+VAD L
Sbjct: 340 LRVACGNCLHRISQMNFRSSHIFREGNQVADTL 372
Score = 26.2 bits (56), Expect(2) = 9e-26
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 796 CGLCCATIESVGHLFVCCVFVGALW 722
CG C + S H+F+ C FV +LW
Sbjct: 109 CGRDCES--SFPHIFLTCSFVASLW 131
>ref|XP_004309110.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 872
Score = 113 bits (283), Expect(2) = 2e-25
Identities = 69/214 (32%), Positives = 101/214 (47%)
Frame = -3
Query: 654 QVAFLWRVAVLSCIWLIWQIRNDLTFNNKTWTVDAATLRFRVLILESSSLDRGCMDNDQH 475
Q+ LW + S +W IW RN + F+++T++V I SS L G M N H
Sbjct: 624 QLKELWLICFTSILWYIWHARNQIRFDSRTFSVAGVCRLVSRHIQASSRLATGHMHNTIH 683
Query: 474 NLFILRRLRVPRHPRQASKIVQVNWQKPLPGWIKVNTDGSASGALGHLTASXXXXXXXXX 295
+L IL+ R+ ++V+V W P GWIK+N+DG+ G
Sbjct: 684 DLCILKSFGACCRSRRIPRMVEVIWHPPSIGWIKINSDGAWKHEEGIGGFGAVFRYYKGQ 743
Query: 294 XXXXXVERCGSGFAFEAELMAAMRAIHYAFAKGWTKLWLESDLVYVVELLRKRSTGVPWR 115
+ A++M + AI A+ + W +WLE D V++ +R S VPW+
Sbjct: 744 FVGAFASHIDIPSSIAAKVMVVITAIELAWVRDWKHVWLEVDFSTVLDYIRSPSL-VPWQ 802
Query: 114 HLSMWRYTLHLLSQMDLVVSHIFREGNRVADMLS 13
W L+ +S M SHIFREGNRVAD L+
Sbjct: 803 LRVRWLNCLYRISTMTFKSSHIFREGNRVADALA 836
Score = 29.6 bits (65), Expect(2) = 2e-25
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -2
Query: 796 CGLCCATIESVGHLFVCCVFVGALWR---WIFDSFDVRNFMAYSFN 668
C C + ES+ H+F+ C F ++W +IF+ V N +A F+
Sbjct: 569 CEFCGNSTESLDHIFLHCSFAASVWNHFIYIFEIGLVPNTIAEVFS 614
>gb|EMJ14652.1| hypothetical protein PRUPE_ppa024777mg, partial [Prunus persica]
Length = 465
Score = 115 bits (289), Expect(2) = 2e-24
Identities = 69/214 (32%), Positives = 99/214 (46%)
Frame = -3
Query: 654 QVAFLWRVAVLSCIWLIWQIRNDLTFNNKTWTVDAATLRFRVLILESSSLDRGCMDNDQH 475
Q+ LW + + +WLIW +RN L F K TV + + SS L RG + N H
Sbjct: 222 QLMDLWLLMFRTIVWLIWDLRNKLRFEEKVSTVSSNCRTIINHVPASSPLARGHILNKVH 281
Query: 474 NLFILRRLRVPRHPRQASKIVQVNWQKPLPGWIKVNTDGSASGALGHLTASXXXXXXXXX 295
+L I+R + V PR SKIV+V W P G++K+ DG+ G +
Sbjct: 282 DLCIIRSIGVHYRPRPNSKIVEVTWHPPCFGFVKIKIDGACKRDSGKAGSGGVFRNYQGH 341
Query: 294 XXXXXVERCGSGFAFEAELMAAMRAIHYAFAKGWTKLWLESDLVYVVELLRKRSTGVPWR 115
AE++A ++AI A+ W +W+E+D + V + R VPWR
Sbjct: 342 VLGAFSANLDVPSGVHAEVLAVIKAIELAWLHAWHNIWIETDSLLVTKFFRSPHL-VPWR 400
Query: 114 HLSMWRYTLHLLSQMDLVVSHIFREGNRVADMLS 13
W+ L L M +SHIFREGN D L+
Sbjct: 401 LRVDWQNCLLRLQHMSFKISHIFREGNHDVDALA 434
Score = 23.5 bits (49), Expect(2) = 2e-24
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 772 ESVGHLFVCCVFVGALWRWIFDSF 701
E++ HLF C F ++W +F F
Sbjct: 175 ENINHLFSECPFTCSIWSSMFIVF 198
>ref|YP_008992319.1| hypothetical protein Salmi_Mp055 (mitochondrion) [Salvia
miltiorrhiza] gi|534292292|gb|AGU16584.1| hypothetical
protein Salmi_Mp055 (mitochondrion) [Salvia
miltiorrhiza]
Length = 119
Score = 117 bits (292), Expect = 6e-24
Identities = 53/83 (63%), Positives = 64/83 (77%)
Frame = -3
Query: 261 GFAFEAELMAAMRAIHYAFAKGWTKLWLESDLVYVVELLRKRSTGVPWRHLSMWRYTLHL 82
GFAFEAEL+ M A+ AF+KGW LW+ESD +YVV LLR RS VPW H + W YTLHL
Sbjct: 2 GFAFEAELVGVMMAVDIAFSKGWHSLWIESDSIYVVSLLRSRSMIVPWNHRNRWLYTLHL 61
Query: 81 LSQMDLVVSHIFREGNRVADMLS 13
+ QM++VV+HIFREGN VAD L+
Sbjct: 62 IRQMNIVVTHIFREGNHVADALA 84
>gb|EXB74531.1| hypothetical protein L484_026228 [Morus notabilis]
Length = 203
Score = 102 bits (253), Expect = 2e-19
Identities = 59/158 (37%), Positives = 79/158 (50%)
Frame = -3
Query: 486 NDQHNLFILRRLRVPRHPRQASKIVQVNWQKPLPGWIKVNTDGSASGALGHLTASXXXXX 307
N + IL +L V ++ ++ KI V W P GW+KVN D SA GAL +
Sbjct: 35 NSAFEIRILNKLYVRQNFPRSPKIFLVYWIPPPSGWVKVNIDSSAKGALDPIACGGIFRN 94
Query: 306 XXXXXXXXXVERCGSGFAFEAELMAAMRAIHYAFAKGWTKLWLESDLVYVVELLRKRSTG 127
G+GFAFEAEL A + AI F GW KLWLESD ++ LL +
Sbjct: 95 ARGFVCDCFSVFLGNGFAFEAELWAVINAISITFENGWHKLWLESDSSLIICLLSFKFLQ 154
Query: 126 VPWRHLSMWRYTLHLLSQMDLVVSHIFREGNRVADMLS 13
V W+ + W + L +MD SH++RE N AD L+
Sbjct: 155 VSWKLRNEWSRAVSLSIRMDFHFSHVYREINGCADKLA 192
>ref|XP_004309966.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 197
Score = 101 bits (252), Expect = 3e-19
Identities = 59/160 (36%), Positives = 77/160 (48%)
Frame = -3
Query: 492 MDNDQHNLFILRRLRVPRHPRQASKIVQVNWQKPLPGWIKVNTDGSASGALGHLTASXXX 313
M N L IL R+ + P + KIV+V W +K+NTDG+A G+ G
Sbjct: 1 MKNTVGELCILHRIGIKGRPSKVPKIVEVMWHVLSIYQVKLNTDGAARGSPGLAGFGGIF 60
Query: 312 XXXXXXXXXXXVERCGSGFAFEAELMAAMRAIHYAFAKGWTKLWLESDLVYVVELLRKRS 133
G A EAEL A + AI A +GW LW+ESD V+ L
Sbjct: 61 RDHLGQVLCCFSGNLGIATALEAELQAVIHAIQMASQRGWRSLWIESDSTLVIHFLSSFQ 120
Query: 132 TGVPWRHLSMWRYTLHLLSQMDLVVSHIFREGNRVADMLS 13
VPWR + W +L+ M + VSHI+REGNRVAD L+
Sbjct: 121 VDVPWRFTTEWFNCRTILTSMTVKVSHIYREGNRVADCLA 160
>ref|XP_004292254.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 197
Score = 101 bits (252), Expect = 3e-19
Identities = 58/160 (36%), Positives = 77/160 (48%)
Frame = -3
Query: 492 MDNDQHNLFILRRLRVPRHPRQASKIVQVNWQKPLPGWIKVNTDGSASGALGHLTASXXX 313
M N L IL R+ + P +A KIV+V W P +K+NTDG+A G+ G
Sbjct: 1 MKNTVGELCILHRIGIKGRPSKAPKIVEVMWHVPSIYQVKLNTDGAARGSPGLAGFGGIF 60
Query: 312 XXXXXXXXXXXVERCGSGFAFEAELMAAMRAIHYAFAKGWTKLWLESDLVYVVELLRKRS 133
G A EAEL + AI A +GW LW+ESD V+ L
Sbjct: 61 RDHLGHVLGCFSGNLGIANALEAELQTVIHAIQMASQRGWHSLWIESDSTLVIHFLSSFQ 120
Query: 132 TGVPWRHLSMWRYTLHLLSQMDLVVSHIFREGNRVADMLS 13
VPWR + W +L+ M + VSHI+REGN +AD L+
Sbjct: 121 VDVPWRFTTEWFNCRTILTTMTVKVSHIYREGNSIADCLA 160
>ref|XP_004301067.1| PREDICTED: uncharacterized protein LOC101309260 [Fragaria vesca
subsp. vesca]
Length = 209
Score = 98.6 bits (244), Expect = 2e-18
Identities = 61/169 (36%), Positives = 87/169 (51%), Gaps = 1/169 (0%)
Frame = -3
Query: 516 SSSLDRGCMDNDQHNLFILRRLRVPRHPRQASKIVQVNWQKPLPGWIKVNTDGSASGALG 337
SS L GCM+N L +L+ VP R+A +I++VNW PL IK+NT+G+ + A G
Sbjct: 7 SSFLASGCMNNSVSELCVLKCFDVPCKSRRAPRIIEVNWIPPLFDCIKINTNGAFNHASG 66
Query: 336 HLTASXXXXXXXXXXXXXXVERCGSGF-AFEAELMAAMRAIHYAFAKGWTKLWLESDLVY 160
A V C +AE+MA ++AI A+ + W +WLE D
Sbjct: 67 --KAGFRGVFRNFKGEFIGVFACNLDIPCSDAEVMAVIKAIDLAWVREWRHIWLEVDSAI 124
Query: 159 VVELLRKRSTGVPWRHLSMWRYTLHLLSQMDLVVSHIFREGNRVADMLS 13
V+ + +PWR W ++ +SQM SHIFREGN+VAD L+
Sbjct: 125 VLNFIHSPHL-IPWRFRVAWDNCMYRVSQMQFQCSHIFREGNQVADALA 172
>ref|XP_004308308.1| PREDICTED: uncharacterized protein LOC101295087 [Fragaria vesca
subsp. vesca]
Length = 227
Score = 95.9 bits (237), Expect = 1e-17
Identities = 55/180 (30%), Positives = 84/180 (46%)
Frame = -3
Query: 654 QVAFLWRVAVLSCIWLIWQIRNDLTFNNKTWTVDAATLRFRVLILESSSLDRGCMDNDQH 475
Q+ LW A + ++ IW+ RN F+ V A ++ S+ + CM+N
Sbjct: 26 QLRELWLTAFVVTLYCIWKFRNQARFDGVQPNVSKACNLIFGQVVASNKISSSCMNNGVF 85
Query: 474 NLFILRRLRVPRHPRQASKIVQVNWQKPLPGWIKVNTDGSASGALGHLTASXXXXXXXXX 295
L IL+++ VP P +A IV+VNW PL GW+KVNTDG+ + G
Sbjct: 86 YLSILKKVGVPCKPSKAPCIVEVNWHPPLFGWVKVNTDGAWRSSSGQAGYGGIFRDFRGG 145
Query: 294 XXXXXVERCGSGFAFEAELMAAMRAIHYAFAKGWTKLWLESDLVYVVELLRKRSTGVPWR 115
+ AE+MA ++AI ++ + W +WLE D V+ LR VPW+
Sbjct: 146 VLGVFCSNFNMASSVAAEVMAVIKAIELSWVRDWKHVWLEVDSSLVITFLRSPHL-VPWK 204
>ref|XP_004308354.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 235
Score = 95.1 bits (235), Expect = 2e-17
Identities = 67/202 (33%), Positives = 92/202 (45%), Gaps = 4/202 (1%)
Frame = -3
Query: 606 IWQIRNDLTFNNKT---WTVDAATLRF-RVLILESSSLDRGCMDNDQHNLFILRRLRVPR 439
+W+ RN L F+N+ +T+ + + + R + L + +G +D +L L V
Sbjct: 3 LWKARNKLRFDNRPPNFYTMCCSIMAWIRQISLFAPGHYKGVLDAR-----LLASLGVAS 57
Query: 438 HPRQASKIVQVNWQKPLPGWIKVNTDGSASGALGHLTASXXXXXXXXXXXXXXVERCGSG 259
+A +I V WQ P WIKVNT+G A G G G
Sbjct: 58 KGGKAPRIQHVLWQPPFFPWIKVNTNGLAKGNPGPAACGGVFRDASGGFLGSFCHSLGWK 117
Query: 258 FAFEAELMAAMRAIHYAFAKGWTKLWLESDLVYVVELLRKRSTGVPWRHLSMWRYTLHLL 79
+F +EL + AI A KGW LWLESD V VV RS W W L ++
Sbjct: 118 TSFYSELYVVILAIEIAHDKGWVYLWLESDSVSVVACFSSRSFSPTWNLRVRWNNCLLII 177
Query: 78 SQMDLVVSHIFREGNRVADMLS 13
QM+ SHIFREGN VAD ++
Sbjct: 178 RQMNFRYSHIFREGNIVADKMA 199
>ref|XP_004289115.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 210
Score = 94.4 bits (233), Expect = 4e-17
Identities = 57/168 (33%), Positives = 83/168 (49%)
Frame = -3
Query: 516 SSSLDRGCMDNDQHNLFILRRLRVPRHPRQASKIVQVNWQKPLPGWIKVNTDGSASGALG 337
SS L GCM+N L +L+ VP R+A +I++VNW PL IK+NTDG+ + G
Sbjct: 7 SSFLASGCMNNSISELCVLKCFDVPCKLRRAPRIIEVNWIPPLFDCIKINTDGAFNYDSG 66
Query: 336 HLTASXXXXXXXXXXXXXXVERCGSGFAFEAELMAAMRAIHYAFAKGWTKLWLESDLVYV 157
+ +AE+M ++AI A+ + W +WLE D V
Sbjct: 67 KAGFGGVFRNFKGEFIGAFACNLHIPCSVDAEVMVVIKAIELAWIREWKHIWLEVDFAIV 126
Query: 156 VELLRKRSTGVPWRHLSMWRYTLHLLSQMDLVVSHIFREGNRVADMLS 13
+ + VPWR +W ++ +SQM SHIFREGN+VA L+
Sbjct: 127 LNFIHSPHL-VPWRFRVVWDNCMYRVSQMQFRCSHIFREGNQVAYALA 173
>ref|XP_004304923.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 209
Score = 94.0 bits (232), Expect = 5e-17
Identities = 54/139 (38%), Positives = 66/139 (47%)
Frame = -3
Query: 429 QASKIVQVNWQKPLPGWIKVNTDGSASGALGHLTASXXXXXXXXXXXXXXVERCGSGFAF 250
+A +I V WQ P WIKVNTDG A G + G +F
Sbjct: 35 KAPRIQHVLWQPPFFPWIKVNTDGLAKGNPSPAACGGVFRDASGGFLGSFCQSLGWKTSF 94
Query: 249 EAELMAAMRAIHYAFAKGWTKLWLESDLVYVVELLRKRSTGVPWRHLSMWRYTLHLLSQM 70
+EL A + AI A KGW LWLESD V VV +S PW W L ++ QM
Sbjct: 95 YSELYAVILAIEIAHDKGWVYLWLESDSVSVVACFSSKSFSPPWNLRVRWNNCLSIIRQM 154
Query: 69 DLVVSHIFREGNRVADMLS 13
+ SHIFREGN VAD ++
Sbjct: 155 NFRCSHIFREGNMVADKMA 173
>ref|XP_002516681.1| conserved hypothetical protein [Ricinus communis]
gi|223544176|gb|EEF45700.1| conserved hypothetical
protein [Ricinus communis]
Length = 180
Score = 90.9 bits (224), Expect = 5e-16
Identities = 51/118 (43%), Positives = 61/118 (51%)
Frame = -3
Query: 372 VNTDGSASGALGHLTASXXXXXXXXXXXXXXVERCGSGFAFEAELMAAMRAIHYAFAKGW 193
VNTDGSA GALG A G+ AF EL +A A+ A+ GW
Sbjct: 50 VNTDGSALGALGPAGAGGLFRNPSGYVMGAFAFSLGTNCAFFVELNSASFAVCKAWEVGW 109
Query: 192 TKLWLESDLVYVVELLRKRSTGVPWRHLSMWRYTLHLLSQMDLVVSHIFREGNRVADM 19
LWLESD +YVV L R + T V W W LH + QMD VS++FREGN+ DM
Sbjct: 110 LHLWLESDSIYVVHLFRTKGTSVLWELRLAWSRYLHFVQQMDFRVSYVFREGNKPTDM 167
>gb|AGV40503.1| hypothetical protein [Phaseolus vulgaris]
Length = 234
Score = 87.4 bits (215), Expect = 5e-15
Identities = 56/199 (28%), Positives = 86/199 (43%)
Frame = -3
Query: 609 LIWQIRNDLTFNNKTWTVDAATLRFRVLILESSSLDRGCMDNDQHNLFILRRLRVPRHPR 430
+IW++RN F +K A ++ + L +S + M ND + +++ +
Sbjct: 1 MIWRMRNYARFQDKIGVSKAISIIKDLTCLVGNS-SKASMKNDMLDFNVIKFFGIKTRSG 59
Query: 429 QASKIVQVNWQKPLPGWIKVNTDGSASGALGHLTASXXXXXXXXXXXXXXVERCGSGFAF 250
+ + + + W+ P PGW+K+NTDG+A G G T A
Sbjct: 60 KVLRPLPIRWEFPSPGWVKINTDGAARGYPGLATCGGIFRGSMGEFIGAFSAFLEVQTAL 119
Query: 249 EAELMAAMRAIHYAFAKGWTKLWLESDLVYVVELLRKRSTGVPWRHLSMWRYTLHLLSQM 70
AE + A+ A G T +WLE D V R T VPW + W L+ +
Sbjct: 120 VAEFYGVIHAMEEAQKMGLTNVWLECDSALVCAAFTAR-TNVPWMLQNRWNTCLNFCGTI 178
Query: 69 DLVVSHIFREGNRVADMLS 13
V+HIFREGN AD L+
Sbjct: 179 RFRVTHIFREGNACADKLA 197
>ref|XP_004304990.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 202
Score = 85.5 bits (210), Expect = 2e-14
Identities = 58/195 (29%), Positives = 88/195 (45%)
Frame = -3
Query: 597 IRNDLTFNNKTWTVDAATLRFRVLILESSSLDRGCMDNDQHNLFILRRLRVPRHPRQASK 418
IR DLT + W + F I + + G M N +L I++ +A +
Sbjct: 4 IRPDLTISRSLWL--QFVISFWGYIRAAGWIANGPMHNLVQDLQIIKSFGAECRLGRAPR 61
Query: 417 IVQVNWQKPLPGWIKVNTDGSASGALGHLTASXXXXXXXXXXXXXXVERCGSGFAFEAEL 238
+++V W P+ GW+K+N+DG+ A G + AE+
Sbjct: 62 VIEVVWHPPVIGWVKINSDGAWKHAEGVGGFGAIFRDFKCHVLGAFSSNIDIPSSVAAEV 121
Query: 237 MAAMRAIHYAFAKGWTKLWLESDLVYVVELLRKRSTGVPWRHLSMWRYTLHLLSQMDLVV 58
+A + AI A+ + W +WLE D V++ LR VPW W L +S+M
Sbjct: 122 IAVIVAIELAWVRDWKHIWLEVDSSLVLDYLRSPLL-VPWHLRVRWLNCLRCISKMIFRS 180
Query: 57 SHIFREGNRVADMLS 13
SHIFREGN+VAD L+
Sbjct: 181 SHIFREGNKVADALA 195
>ref|XP_004289281.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 215
Score = 84.0 bits (206), Expect = 6e-14
Identities = 51/141 (36%), Positives = 64/141 (45%), Gaps = 1/141 (0%)
Frame = -3
Query: 435 PRQASKIVQ-VNWQKPLPGWIKVNTDGSASGALGHLTASXXXXXXXXXXXXXXVERCGSG 259
P +A K ++ V W PL WIK+NTDG A G G T G
Sbjct: 38 PSRAQKRIRLVLWHPPLSPWIKLNTDGLAKGNPGPATCGGVFRDYQGHFIGGFSTPIGHH 97
Query: 258 FAFEAELMAAMRAIHYAFAKGWTKLWLESDLVYVVELLRKRSTGVPWRHLSMWRYTLHLL 79
F +EL+A + I AF GW +WLE D VVE K S PW+ ++W +
Sbjct: 98 NDFFSELLAVIIGIELAFQLGWQHVWLECDSTSVVECFSKSSFVPPWQLRTLWYNCVART 157
Query: 78 SQMDLVVSHIFREGNRVADML 16
M SH+ REGN VAD L
Sbjct: 158 RSMSFFCSHVLREGNIVADRL 178
>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
protein ccsA [Medicago truncatula]
Length = 666
Score = 76.6 bits (187), Expect(2) = 7e-14
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 3/210 (1%)
Frame = -3
Query: 630 AVLSCIWLIWQIRNDLTFNNKTWTVDAATLRFRVLILESSSLDRGCM---DNDQHNLFIL 460
A++ IW IW RN F+NK A T F +++ E CM ++ + +
Sbjct: 140 AIIHTIWSIWIERNQRCFHNKH---QAMTTLFNIILAEVKMSFSLCMIKGNSAMQDYKVA 196
Query: 459 RRLRVPRHPRQASKIVQVNWQKPLPGWIKVNTDGSASGALGHLTASXXXXXXXXXXXXXX 280
+ +P ++ + + + W+ P+ +K+N DGS+ G +
Sbjct: 197 KLFNIPFKVKRVTPHLDIIWKPPIGDIVKINCDGSSVGRHPCGSIGIVIRDSNHHFLGAI 256
Query: 279 VERCGSGFAFEAELMAAMRAIHYAFAKGWTKLWLESDLVYVVELLRKRSTGVPWRHLSMW 100
G+ EAE A M A+ A + LE+D + VV K GVPW+ + W
Sbjct: 257 SSNIGNATPLEAEFCAGMMAMEKAQEMQLMHVCLETDSLKVVNAFNK-GLGVPWQMRARW 315
Query: 99 RYTLHLLSQMDLVVSHIFREGNRVADMLSK 10
+ + HI REGN VAD L+K
Sbjct: 316 QNCWDFCDSISCSCVHILREGNMVADALAK 345
Score = 27.3 bits (59), Expect(2) = 7e-14
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -2
Query: 796 CGLCCATIESVGHLFVCCVFVGALWRWI 713
C C + ES H+F C LW W+
Sbjct: 78 CCFCMKSAESSQHIFFECHVTSRLWDWL 105
>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
Endonuclease/exonuclease/phosphatase [Medicago
truncatula]
Length = 1246
Score = 83.2 bits (204), Expect = 1e-13
Identities = 65/199 (32%), Positives = 93/199 (46%), Gaps = 4/199 (2%)
Frame = -3
Query: 597 IRNDLTFNNKTWTVDAATLRFRVLILESSSLDRG-CMDNDQHNLFILRRLRV-PRHPRQA 424
+RN F ++ ++ +A R LI S ++ G C+ +D IL V PRH R+
Sbjct: 952 LRNAFRFQSQLQSIQSAKARIHSLIAMSGNVSTGKCLHSDSA---ILEEFSVSPRH-RKY 1007
Query: 423 SKIVQVNWQKPLPGWIKVNTDGSASGALGHLTASXXXXXXXXXXXXXXVERCGSGFA--F 250
I+ V W+ P P +KVNTDGS G L A+ C G A F
Sbjct: 1008 KDIILVLWKNPSPPLLKVNTDGSVVGGL----AACGGLFRDSSGSFLGAFSCNIGLASVF 1063
Query: 249 EAELMAAMRAIHYAFAKGWTKLWLESDLVYVVELLRKRSTGVPWRHLSMWRYTLHLLSQM 70
AE +A + A+ +A GW LWLESD + ++ S+ V W + W L +
Sbjct: 1064 HAETLAFILALEHAAHHGWRNLWLESDSTSAL-MIFSNSSLVQWLLRNRWHNAQRL--GI 1120
Query: 69 DLVVSHIFREGNRVADMLS 13
++ SHI EGNR AD L+
Sbjct: 1121 QVISSHILHEGNRCADNLA 1139
>ref|XP_004305144.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 183
Score = 82.8 bits (203), Expect = 1e-13
Identities = 47/132 (35%), Positives = 58/132 (43%)
Frame = -3
Query: 408 VNWQKPLPGWIKVNTDGSASGALGHLTASXXXXXXXXXXXXXXVERCGSGFAFEAELMAA 229
V W PL WIK+NTDG A G G G AF +EL+A
Sbjct: 16 VLWHPPLSPWIKLNTDGLAKGNSGPAACGGVFRDYQGHFIGGFSTPIGHHNAFFSELLAV 75
Query: 228 MRAIHYAFAKGWTKLWLESDLVYVVELLRKRSTGVPWRHLSMWRYTLHLLSQMDLVVSHI 49
+ I F GW +WLE D VVE K S PW+ ++W + M SH+
Sbjct: 76 IIGIELTFQLGWQHVWLECDSTSVVECFSKSSFVPPWQLRTLWYNCAARIRSMSFFCSHV 135
Query: 48 FREGNRVADMLS 13
REGN VAD L+
Sbjct: 136 LREGNTVADRLA 147