BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00020186
         (657 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAR13295.1| retrovirus-related pol polyprotein [Phaseolus vul...   217   3e-54
ref|XP_002307225.1| predicted protein [Populus trichocarpa]           178   1e-42
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   159   5e-37
ref|XP_002312500.1| predicted protein [Populus trichocarpa]           131   2e-28
ref|XP_002332290.1| predicted protein [Populus trichocarpa]           130   4e-28
ref|XP_002332556.1| predicted protein [Populus trichocarpa]           124   3e-26
gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subc...   117   2e-24
ref|XP_002331376.1| predicted protein [Populus trichocarpa]           115   9e-24
gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subc...   114   2e-23
gb|AAP53866.2| retrotransposon protein, putative, Ty1-copia subc...   114   3e-23
emb|CAE04897.3| OSJNBa0042I15.19 [Oryza sativa Japonica Group]        109   6e-22
ref|XP_002336894.1| predicted protein [Populus trichocarpa]           101   2e-19
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   100   5e-19
gb|EOY34202.1| Uncharacterized protein TCM_041944 [Theobroma cacao]   100   6e-19
gb|EOY22705.1| Transducin/WD40 repeat-like superfamily protein [...    99   8e-19
gb|EOY09126.1| Uncharacterized protein TCM_024518 [Theobroma cacao]    99   1e-18
gb|EMS60458.1| Retrovirus-related Pol polyprotein from transposo...    97   4e-18
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...    97   4e-18
gb|ABD63151.1| hypothetical protein 20.t00003 [Asparagus officin...    97   5e-18
gb|AAO13467.1| Putative retrovirus-related pol polyprotein [Oryz...    95   2e-17

>gb|AAR13295.1| retrovirus-related pol polyprotein [Phaseolus vulgaris]
          Length = 324

 Score =  217 bits (552), Expect = 3e-54
 Identities = 112/143 (78%), Positives = 118/143 (82%)
 Frame = -2

Query: 431 QGLDIAIXXXXXXXXXXXXXKTINRLACGTIRSCLSREQKYAFKNENSAYKLWKALEDKF 252
           +GLDIAI               INRLACGTIRSCLSREQKY  KNE SA+KLWKALEDKF
Sbjct: 13  KGLDIAIEGEKPKEVEEKDWSIINRLACGTIRSCLSREQKYVVKNETSAHKLWKALEDKF 72

Query: 251 LKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSL 72
           LKKSGQNKLLMKKRLFRF+Y+ GTTMN HIT FNQLVA LLNLDV F DEDLALML+SSL
Sbjct: 73  LKKSGQNKLLMKKRLFRFDYQQGTTMNAHITMFNQLVAYLLNLDVKFEDEDLALMLVSSL 132

Query: 71  PDEFEHLETTLLHGKDDVSLAVV 3
           PDEFEHLETTLLHGKD+VSL VV
Sbjct: 133 PDEFEHLETTLLHGKDNVSLDVV 155


>ref|XP_002307225.1| predicted protein [Populus trichocarpa]
          Length = 279

 Score =  178 bits (452), Expect = 1e-42
 Identities = 93/183 (50%), Positives = 125/183 (68%), Gaps = 5/183 (2%)
 Frame = -2

Query: 536 PGRMLVPNIRISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTINR 357
           P  + V + +  VE FDG G+FGMW+ E +D L Q  LD  +             + IN 
Sbjct: 17  PQYIPVSSTKFEVEKFDGKGNFGMWKCEDMDMLVQINLDFTLEDKPEDLDDKSWER-INW 75

Query: 356 LACGTIRSCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTT 177
           LAC +IR CL ++QKY F  +NSA KLW+ALEDKF+KKS +N+L +KKR+FRF+++ GT+
Sbjct: 76  LACSSIRLCLVKDQKYTFSEQNSAKKLWQALEDKFMKKSIENRLYLKKRIFRFQHKKGTS 135

Query: 176 MNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKD-----DVSL 12
           MN+H+  FN++ ADL NLDV   DED AL+LL+SLPD +EHL TTLL+GK+     DVS 
Sbjct: 136 MNEHLNDFNKMTADLKNLDVEIDDEDKALLLLNSLPDIYEHLVTTLLYGKEKIKFIDVSN 195

Query: 11  AVV 3
           A+V
Sbjct: 196 ALV 198


>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  159 bits (403), Expect = 5e-37
 Identities = 92/155 (59%), Positives = 95/155 (61%)
 Frame = -2

Query: 467 MWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTINRLACGTIRSCLSREQKYAFKNENS 288
           MWQGEVLD LFQQGLDIAI               INRLACGTIRSCLSREQKYA KNE S
Sbjct: 1   MWQGEVLDSLFQQGLDIAIEGEKPKEVEEKDWSIINRLACGTIRSCLSREQKYAVKNETS 60

Query: 287 AYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAFNQLVADLLNLDVTFS 108
           A+KLWKALEDKFLKKS                                       DV F 
Sbjct: 61  AHKLWKALEDKFLKKS---------------------------------------DVKFE 81

Query: 107 DEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVV 3
           DEDLALMLLSSLPDEFEHLETTLLHGK++VSL VV
Sbjct: 82  DEDLALMLLSSLPDEFEHLETTLLHGKENVSLDVV 116


>ref|XP_002312500.1| predicted protein [Populus trichocarpa]
          Length = 182

 Score =  131 bits (330), Expect = 2e-28
 Identities = 72/157 (45%), Positives = 96/157 (61%)
 Frame = -2

Query: 536 PGRMLVPNIRISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTINR 357
           P  + V + +  VE FDG  +FGMW+ EV+D L Q  LD  +             + INR
Sbjct: 17  PQYIPVSSTKFEVEKFDGKCNFGMWKCEVMDMLVQMNLDFTLEDKPEDLDDKSWER-INR 75

Query: 356 LACGTIRSCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTT 177
           LAC +IR CL ++QKYAF  +NSA +LW+ALEDKF+KKS +N+L +KKR+F F+++    
Sbjct: 76  LACSSIRLCLVKDQKYAFSEQNSAKELWQALEDKFMKKSIENRLYLKKRIFHFQHKK--- 132

Query: 176 MNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPD 66
                       ADL NLDV   DED AL+LL+SLPD
Sbjct: 133 ------------ADLKNLDVEIDDEDKALLLLNSLPD 157


>ref|XP_002332290.1| predicted protein [Populus trichocarpa]
          Length = 292

 Score =  130 bits (326), Expect = 4e-28
 Identities = 63/118 (53%), Positives = 91/118 (77%), Gaps = 5/118 (4%)
 Frame = -2

Query: 341 IRSCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHI 162
           + S   + +K+  K +NSA +LW+ALEDKF+KKS +N+L +KKR+FRF+++ G++MN+H+
Sbjct: 22  VSSIKFKVEKFDGKEQNSAKELWQALEDKFMKKSIENRLYLKKRIFRFQHKKGSSMNEHL 81

Query: 161 TAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKD-----DVSLAVV 3
             FN+++ADL NLDV   DED AL+LL+SLPD +EHL TTLL+GK+     DVS A+V
Sbjct: 82  NDFNKMIADLKNLDVEIDDEDKALLLLNSLPDTYEHLVTTLLYGKEKIKFIDVSNALV 139


>ref|XP_002332556.1| predicted protein [Populus trichocarpa]
          Length = 143

 Score =  124 bits (310), Expect = 3e-26
 Identities = 55/100 (55%), Positives = 80/100 (80%)
 Frame = -2

Query: 317 QKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAFNQLVA 138
           +K+  K +NSA +LW+ LEDKF+KKS +N+L +KKR+F F+++ GT+MN+H+  FN+++A
Sbjct: 30  EKFDRKEQNSAKELWQVLEDKFMKKSIENRLYLKKRIFHFQHKKGTSMNEHLNDFNKMIA 89

Query: 137 DLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDV 18
           DL NLDV   DED AL+LL+SL D +EHL TTLL+GK+ +
Sbjct: 90  DLKNLDVEIDDEDKALLLLNSLSDTYEHLVTTLLYGKEKI 129


>gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 425

 Score =  117 bits (294), Expect = 2e-24
 Identities = 61/164 (37%), Positives = 91/164 (55%)
 Frame = -2

Query: 509 RISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTINRLACGTIRSC 330
           +  V  FDGTG+F +WQ  + D L QQG+  A+             + +   A  TIR  
Sbjct: 8   KFEVVKFDGTGNFILWQMRLKDLLAQQGISKALEETMPEKMDAGKWEEMKAQAAATIRLS 67

Query: 329 LSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAFN 150
           LS    Y   +E +  ++W  L   ++ KS  +KL +K++L+  + +  + +  H+  FN
Sbjct: 68  LSDSVMYPVMDEKTPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFN 127

Query: 149 QLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDV 18
           QLV DL  LDV   DED+A++LL SLP  +EH+ TTL+HGKD V
Sbjct: 128 QLVVDLSKLDVKLDDEDMAIILLCSLPPSYEHVVTTLMHGKDTV 171


>ref|XP_002331376.1| predicted protein [Populus trichocarpa]
          Length = 151

 Score =  115 bits (289), Expect = 9e-24
 Identities = 57/116 (49%), Positives = 78/116 (67%)
 Frame = -2

Query: 536 PGRMLVPNIRISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTINR 357
           P  + V N +  VE FDG G+FGMW+ EV+D L Q  LD  +             + INR
Sbjct: 17  PQYIPVSNTKFEVEKFDGKGNFGMWKCEVMDMLVQMNLDFTLEDKPEDLDDKSWER-INR 75

Query: 356 LACGTIRSCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYR 189
           LAC +IR CL ++QKYAF  +NSA +LW+ALEDKF+KKS +N+L +KKR+FRF+++
Sbjct: 76  LACSSIRLCLVKDQKYAFSEQNSAKELWQALEDKFIKKSIENRLYLKKRIFRFQHK 131


>gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 424

 Score =  114 bits (286), Expect = 2e-23
 Identities = 59/169 (34%), Positives = 91/169 (53%)
 Frame = -2

Query: 509 RISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTINRLACGTIRSC 330
           +  V  FDGTG+F +WQ  + D L QQG+  A+             + +   A  TIR  
Sbjct: 8   KFEVVKFDGTGNFVLWQMRLKDLLAQQGISKALEETMPEKMDAGKWEEMKAQAAATIRLS 67

Query: 329 LSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAFN 150
           LS    Y   +E ++ ++W  L   ++ KS  +KL +K++L+  + +  + +  H+  FN
Sbjct: 68  LSDSVMYQVMDEKTSKEIWVKLTSLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFN 127

Query: 149 QLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVV 3
           QLV DL  LDV   DED A++LL SLP  +EH+ T L HGKD +   ++
Sbjct: 128 QLVVDLSKLDVKLDDEDKAIILLCSLPPSYEHVVTILTHGKDTIKTEII 176


>gb|AAP53866.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 415

 Score =  114 bits (284), Expect = 3e-23
 Identities = 62/164 (37%), Positives = 87/164 (53%)
 Frame = -2

Query: 509 RISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTINRLACGTIRSC 330
           +  V  FDGTG+F +WQ  + D L QQG+  A+               +   A  TIR  
Sbjct: 8   KFEVVKFDGTGNFVLWQMRLKDLLAQQGISKALQETMPEKIDADKWNEMKAQAAATIRLS 67

Query: 329 LSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAFN 150
           LS    Y   +E S  ++W  L    + KS  +KL +K++L+  + +  + +  H+  FN
Sbjct: 68  LSDSVMYQVMDEKSPKEIWDKLASLHMSKSLTSKLYLKQQLYGLQVQEESDLRKHVDVFN 127

Query: 149 QLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDV 18
           QLV DL  LDV   DED A++LL SLP  +EH+ TTL HGKD V
Sbjct: 128 QLVVDLSKLDVKLDDEDKAIILLCSLPLSYEHVVTTLTHGKDTV 171


>emb|CAE04897.3| OSJNBa0042I15.19 [Oryza sativa Japonica Group]
          Length = 478

 Score =  109 bits (273), Expect = 6e-22
 Identities = 56/161 (34%), Positives = 88/161 (54%)
 Frame = -2

Query: 533 GRMLVPNIRISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTINRL 354
           G++    ++  +  FDG G+FG+WQ  V D L QQ +  A+             + +   
Sbjct: 81  GKLAPTCMKFDLVKFDGFGNFGLWQTRVKDLLAQQEVSKALKGVKPAKMEDDDCEEMQLQ 140

Query: 353 ACGTIRSCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTM 174
           A  TIR CLS +  Y    E S   +W+ LE +F+ K+  NK  +K++L+  + + G  +
Sbjct: 141 AAATIRRCLSDQIMYHVMEETSPKIIWEKLEAQFMSKTLTNKRYLKQKLYGLKMQEGADL 200

Query: 173 NDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHL 51
             H+  FNQLV DL+ +DV   DED A++LL SLP+ +EH+
Sbjct: 201 TAHVNVFNQLVTDLVKMDVEVDDEDKAIVLLCSLPESYEHV 241


>ref|XP_002336894.1| predicted protein [Populus trichocarpa]
          Length = 137

 Score =  101 bits (251), Expect = 2e-19
 Identities = 50/109 (45%), Positives = 70/109 (64%)
 Frame = -2

Query: 536 PGRMLVPNIRISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTINR 357
           P  + + N +  VE FDG G+FGMW+ EV+D L Q  LD  +             + +NR
Sbjct: 17  PQYIPISNTKFEVEKFDGKGNFGMWKCEVMDMLVQMNLDFTLEDKPEDLDDKSWER-MNR 75

Query: 356 LACGTIRSCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKR 210
           LAC +IR CL ++QKYAF  +N A +LW+ALEDKF+KKS +N+L +KK+
Sbjct: 76  LACSSIRLCLVKDQKYAFSEQNFAKELWQALEDKFMKKSIENRLYLKKK 124


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
           TNT 1-94; Includes: RecName: Full=Protease; Includes:
           RecName: Full=Reverse transcriptase; Includes: RecName:
           Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
           protein product [Nicotiana tabacum]
          Length = 1328

 Score =  100 bits (248), Expect = 5e-19
 Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 2/169 (1%)
 Frame = -2

Query: 512 IRISVETFDGTGHFGMWQGEVLDCLFQQGLD--IAIXXXXXXXXXXXXXKTINRLACGTI 339
           ++  V  F+G   F  WQ  + D L QQGL   + +               ++  A   I
Sbjct: 4   VKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAI 63

Query: 338 RSCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHIT 159
           R  LS +      +E++A  +W  LE  ++ K+  NKL +KK+L+      GT    H+ 
Sbjct: 64  RLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLN 123

Query: 158 AFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSL 12
            FN L+  L NL V   +ED A++LL+SLP  +++L TT+LHGK  + L
Sbjct: 124 VFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIEL 172


>gb|EOY34202.1| Uncharacterized protein TCM_041944 [Theobroma cacao]
          Length = 698

 Score = 99.8 bits (247), Expect = 6e-19
 Identities = 58/170 (34%), Positives = 91/170 (53%), Gaps = 2/170 (1%)
 Frame = -2

Query: 527 MLVPNIRISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTINRL-- 354
           M+  + +  +E F+G   F +W  ++   L QQGL  A+             +  N +  
Sbjct: 1   MVTSSTKYEIEKFNGRNDFSLWCVKMCALLVQQGLLKALKEKEHLLSNLSNGEKDNLMEK 60

Query: 353 ACGTIRSCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTM 174
           A   I   LS E      +E SA  +W  L+  ++ KS  N+L +K+RL+  +   GT++
Sbjct: 61  AHSAILLALSDEVIREVTDEESAIAVWLKLKSIYMTKSLMNRLYIKQRLYTLKMSEGTSV 120

Query: 173 NDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKD 24
           N HI  FN+++ DL N+DV   DEDLAL+LL SLP  +E+   T+L+G+D
Sbjct: 121 NTHIDEFNRVILDLKNIDVKIEDEDLALILLCSLPPSYENFMDTMLYGRD 170


>gb|EOY22705.1| Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
          Length = 1029

 Score = 99.4 bits (246), Expect = 8e-19
 Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 2/173 (1%)
 Frame = -2

Query: 527 MLVPNIRISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKT--INRL 354
           M   + +  +E F+G   F +W+ ++   L QQGL  A+             +   + + 
Sbjct: 123 MATSSTKYEIEKFNGRNDFSLWRVKMRALLVQQGLLKALKGKEHLPSNLSDGEKDDLMKK 182

Query: 353 ACGTIRSCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTM 174
           A   I   LS E      +E SA  +W  LE  ++ KS  N+L MK+RL+  +   GT++
Sbjct: 183 AHSVILLALSDEVLREVTDEESAAAVWFKLESIYMTKSLTNRLYMKQRLYTLKMSEGTSV 242

Query: 173 NDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVS 15
           N HI  FN+++ DL N+DV   DEDLAL+LL  LP  +E+   T+L+G+D ++
Sbjct: 243 NTHIDEFNRVILDLKNIDVKIEDEDLALILLCYLPPSYENFVDTMLYGRDTLT 295


>gb|EOY09126.1| Uncharacterized protein TCM_024518 [Theobroma cacao]
          Length = 277

 Score = 99.0 bits (245), Expect = 1e-18
 Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 2/173 (1%)
 Frame = -2

Query: 527 MLVPNIRISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTINRL-- 354
           M   + +  +E F+G   F +W+ ++   L QQGL  A+             +  + +  
Sbjct: 1   MATSSTKYEIEKFNGRNDFSLWRVKMCALLVQQGLLKALKGKEHLPSNLSDSEKDDLMEK 60

Query: 353 ACGTIRSCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTM 174
           A   I   LS E      +E SA  +W  LE  ++ KS  N+L MK+RL+  +   GT++
Sbjct: 61  AHSAILLTLSDEVLREVTDEESAAAMWFKLESIYITKSLTNRLYMKQRLYTLKMSEGTSV 120

Query: 173 NDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVS 15
           N HI  FN+++ DL N+DV   DEDLAL+LL  LP  +E+   T+L+G+D ++
Sbjct: 121 NTHIDEFNRVILDLKNIDVKIEDEDLALILLCYLPPSYENFVDTMLYGRDTLT 173


>gb|EMS60458.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Triticum urartu]
          Length = 528

 Score = 97.1 bits (240), Expect = 4e-18
 Identities = 46/112 (41%), Positives = 71/112 (63%)
 Frame = -2

Query: 353 ACGTIRSCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTM 174
           A  TIR  LS +  Y   +ENS  K+W+ LE +F+ K+   K+ +K++L     + G+ +
Sbjct: 371 AARTIRLFLSDQVIYHVMDENSPKKIWEKLESQFMSKTAMTKVYLKQKLHGMRIQEGSDL 430

Query: 173 NDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDV 18
            +++ AFNQ+V DL  L  T  DED+A++LL SLP  ++HL TTL HGK+ +
Sbjct: 431 VEYMNAFNQVVTDLARLGATVDDEDMAILLLCSLPSSYDHLITTLTHGKETI 482


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score = 97.1 bits (240), Expect = 4e-18
 Identities = 59/170 (34%), Positives = 85/170 (50%)
 Frame = -2

Query: 512 IRISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTINRLACGTIRS 333
           + + ++ F G   F +WQ ++   L QQG   A                +   A  TI  
Sbjct: 4   LNVKIDKFTGRNSFSLWQIKMRALLKQQGF-WAPLSKDKNAVVTPEMAILEEKAHSTIML 62

Query: 332 CLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAF 153
           CL+ +      +E +A  LW  LE  ++ KS  NKLL+K+RLF      GT + +H+   
Sbjct: 63  CLADDVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQLREHLEQL 122

Query: 152 NQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVV 3
           N L+ +L N+DV   DED AL+LL SLP  FE+   + + GKD VSL  V
Sbjct: 123 NTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKDTVSLEEV 172


>gb|ABD63151.1| hypothetical protein 20.t00003 [Asparagus officinalis]
          Length = 1011

 Score = 96.7 bits (239), Expect = 5e-18
 Identities = 48/122 (39%), Positives = 78/122 (63%), Gaps = 1/122 (0%)
 Frame = -2

Query: 365  INRLACGTIRSCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRS 186
            +NR  CG IRSCL +E KY      S  K+W+ L +K+L KS +N+L + +RLFRF+   
Sbjct: 836  MNRNTCGVIRSCLEQELKYDVIGVTSVMKMWEILNNKYLTKSVENRLHLLRRLFRFQMSR 895

Query: 185  GTTMNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPD-EFEHLETTLLHGKDDVSLA 9
            GT++  ++  + +L+++L N+D   SDE   ++LL SLPD E++    TLL+G+  +S +
Sbjct: 896  GTSLAAYVNNYTKLLSNLANVDEKISDEYKTIILLGSLPDEEYDTFLLTLLNGRPSISYS 955

Query: 8    VV 3
             +
Sbjct: 956  EI 957


>gb|AAO13467.1| Putative retrovirus-related pol polyprotein [Oryza sativa Japonica
           Group] gi|108706491|gb|ABF94286.1| retrotransposon
           protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 556

 Score = 94.7 bits (234), Expect = 2e-17
 Identities = 54/151 (35%), Positives = 77/151 (50%)
 Frame = -2

Query: 470 GMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTINRLACGTIRSCLSREQKYAFKNEN 291
           G  Q  + D L QQG+  A+               +   A   IR  LS    Y   +E 
Sbjct: 152 GSSQMRLKDLLAQQGISKALEETMPEKMDVGKWVEMKAQATAIIRLSLSDFVMYQVMDEK 211

Query: 290 SAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAFNQLVADLLNLDVTF 111
           +  ++W  L   ++ KS  +KL +K++L+  + +  + +  H+  FNQLV DL  LDV  
Sbjct: 212 TPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKLDVKL 271

Query: 110 SDEDLALMLLSSLPDEFEHLETTLLHGKDDV 18
            DED A++LL SLP  FEH+ TTL HGKD V
Sbjct: 272 DDEDKAIILLCSLPPSFEHVVTTLTHGKDTV 302