BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00018863
         (1493 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006486503.1| PREDICTED: uncharacterized protein LOC102607...   505   e-140
ref|XP_006478539.1| PREDICTED: uncharacterized protein LOC102614...   504   e-140
gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subc...   477   e-132
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             454   e-125
ref|XP_006464891.1| PREDICTED: uncharacterized protein LOC102626...   453   e-124
ref|XP_006488688.1| PREDICTED: uncharacterized protein LOC102623...   452   e-124
emb|CAE03952.2| OSJNBb0085H11.1 [Oryza sativa Japonica Group]         439   e-120
gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subc...   439   e-120
emb|CAD40452.2| OSJNBa0041M21.10 [Oryza sativa Japonica Group] g...   438   e-120
emb|CAH66268.1| OSIGBa0136B09.4 [Oryza sativa Indica Group]           438   e-120
gb|ABF97503.1| retrotransposon protein, putative, unclassified [...   438   e-120
gb|AAT81681.1| putative retrotransposon protein [Oryza sativa Ja...   438   e-120
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]               438   e-120
emb|CAH68043.1| OSIGBa0139N19-OSIGBa0137L10.12 [Oryza sativa Ind...   437   e-120
gb|ABB47013.1| retrotransposon protein, putative, Ty3-gypsy subc...   437   e-120
gb|AAL86511.1|AC099040_15 putative polyprotein [Oryza sativa Jap...   435   e-119
gb|AAP52706.2| retrotransposon protein, putative, Ty3-gypsy subc...   435   e-119
gb|AAY99339.1| pol-polyprotein [Silene latifolia]                     431   e-118
dbj|BAK61840.1| gag-pol polyprotein [Citrus unshiu]                   430   e-118
gb|AAU44275.1| putative polyprotein [Oryza sativa Japonica Group]     430   e-118

>ref|XP_006486503.1| PREDICTED: uncharacterized protein LOC102607673 [Citrus sinensis]
          Length = 1866

 Score =  505 bits (1300), Expect = e-140
 Identities = 253/498 (50%), Positives = 346/498 (69%), Gaps = 1/498 (0%)
 Frame = +1

Query: 1    QRVFVDTGSSADILFYDCYKKMDLQ-VGLETVDTALVGFAGGMIQPIGMITLPVSLGKEP 177
            +R+ VDTGSS DILF      M +  + LE  +T+L GF GG + P+G+I LP+++G +P
Sbjct: 641  RRILVDTGSSVDILFKSALDDMGISDLKLERTNTSLKGFGGGRLTPMGVIELPITVGTKP 700

Query: 178  NRKTRMIRFLIVDAPSSYNVMLGRPALNAFQAVVSVYHLKMKFPVGEKVGEVDGDQYMAR 357
              +T M+ F++V+  S Y ++LGRP +   Q V+S ++L +K+ +   VG V GDQ MAR
Sbjct: 701  FERTMMLDFVVVEERSPYQMILGRPFMRISQCVISTHYLALKYRINGVVGVVKGDQRMAR 760

Query: 358  KLYVESIQKAERGSAFDDDRNKDKLVRLDEPVEHVQPNDEMMMVELVPGDPDKVTKVGKE 537
              Y  + ++  + ++ D+        R D      +P +++  V +   DP KV KVG E
Sbjct: 761  SCYATAAKETLQVTSLDN--------RGDSKNGRQEPVEKLKEVVVSRSDPSKVVKVGSE 812

Query: 538  LTDELRDELVEFLRNNVDVFAWTAEDLVGIDPSIAEHRLNVNPSYKPVKQKKRNFGPKKD 717
            L + ++ ELV+ L+++ D+FAW+ ED+ GID  IA H+L V    +PV+QK+R F  ++ 
Sbjct: 813  LGEAIKGELVKCLQSHADIFAWSHEDMPGIDRGIACHKLAVKRGARPVRQKRRCFNHERY 872

Query: 718  AIIRAEVQKLLKAGHIKEIQFPEWLSNAVLVPKTEDDWRMCVDFRDLNRACPKDYYPLPR 897
              I AEV+KLLKAG I+E ++PEW+SN VLV K    WRMCVDF DLN+ACPKD +PLP+
Sbjct: 873  EAINAEVEKLLKAGFIREAKYPEWISNVVLVKKANGKWRMCVDFTDLNKACPKDSFPLPK 932

Query: 898  IDQLVDSTSGCELLSMMDASQGYHQIRLAEEDQKRVCFTTSFGTFCYVVMPFGLKNAGAT 1077
            IDQLVDST+G  LLS MDA  GY+QI + E+D++   F T+ G FCY VMPFGLKNAGAT
Sbjct: 933  IDQLVDSTAGHSLLSFMDAFSGYNQIPMNEQDEESTTFITNMGLFCYRVMPFGLKNAGAT 992

Query: 1078 YQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVNHVHDLAETFDTLRKYRMKLNPKKCAFG 1257
            YQRLV+K+F   +GR MEVYVDDM+ KS +  +HV  L ETF+ LR+Y+MKLNP+KCAFG
Sbjct: 993  YQRLVNKVFKPLIGRTMEVYVDDMITKSREPRDHVKHLEETFELLRRYKMKLNPEKCAFG 1052

Query: 1258 VRSGKFLGYMVTEKGIEANPEKVRAIREMAPPRDAKDVQCLTGRLAALNRFISRLAERSL 1437
            V SGKFLGY+V+ +GIEAN EK+RA+ EM  PR  K+VQ LTG+LAALNRFISR  ++  
Sbjct: 1053 VSSGKFLGYLVSHRGIEANLEKIRAVIEMRSPRTVKEVQSLTGKLAALNRFISRATDKCH 1112

Query: 1438 PFFKVLRKAKKFVWDEEC 1491
            PFF++++K KK  W  EC
Sbjct: 1113 PFFQIIKKGKKMEWTPEC 1130


>ref|XP_006478539.1| PREDICTED: uncharacterized protein LOC102614166 [Citrus sinensis]
          Length = 1089

 Score =  504 bits (1299), Expect = e-140
 Identities = 258/498 (51%), Positives = 347/498 (69%), Gaps = 1/498 (0%)
 Frame = +1

Query: 1    QRVFVDTGSSADILFYDCYKKMDLQ-VGLETVDTALVGFAGGMIQPIGMITLPVSLGKEP 177
            +R+ VDTGSS DILF      M +  + LE  +T+L GF GG + P+G+I LP+++G +P
Sbjct: 474  RRILVDTGSSVDILFKSALDDMGISDLKLERTNTSLKGFGGGRLTPMGVIELPITVGTKP 533

Query: 178  NRKTRMIRFLIVDAPSSYNVMLGRPALNAFQAVVSVYHLKMKFPVGEKVGEVDGDQYMAR 357
              +T M+ F++V+  S Y ++LGRP +   Q V+S ++L +K+ +   VG V GDQ MAR
Sbjct: 534  FERTMMLDFVVVEERSPYQMILGRPFMRISQCVMSTHYLALKYRINGVVGVVKGDQRMAR 593

Query: 358  KLYVESIQKAERGSAFDDDRNKDKLVRLDEPVEHVQPNDEMMMVELVPGDPDKVTKVGKE 537
              Y  + ++  + ++ D+ R   K  R  EPVE ++       V +   DP +V KVG E
Sbjct: 594  SCYATAAKETLQVTSLDN-RGDSKNGR-QEPVEKLEE------VVISRSDPSRVVKVGSE 645

Query: 538  LTDELRDELVEFLRNNVDVFAWTAEDLVGIDPSIAEHRLNVNPSYKPVKQKKRNFGPKKD 717
            L + ++ ELV+ L+++ DVFAW+ ED+ GID  IA H+L V    +PV+QK+R F  ++ 
Sbjct: 646  LGEAIKAELVKCLQSHADVFAWSHEDMPGIDRGIACHKLAVKRGARPVRQKRRCFNHERY 705

Query: 718  AIIRAEVQKLLKAGHIKEIQFPEWLSNAVLVPKTEDDWRMCVDFRDLNRACPKDYYPLPR 897
              I AEV+KLLKAG I+E ++PEW+SN VLV K    WRMCVDF DLN+ACPKD +PLP+
Sbjct: 706  EAINAEVEKLLKAGFIREAKYPEWISNVVLVKKANGKWRMCVDFTDLNKACPKDSFPLPK 765

Query: 898  IDQLVDSTSGCELLSMMDASQGYHQIRLAEEDQKRVCFTTSFGTFCYVVMPFGLKNAGAT 1077
            IDQLVDST+G  LLS MDA  GY+QI + E+D++   F T+ G FCY +MPFGLKNAGAT
Sbjct: 766  IDQLVDSTAGHGLLSFMDAFSGYNQIPMNEQDEENTTFITNMGLFCYRMMPFGLKNAGAT 825

Query: 1078 YQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVNHVHDLAETFDTLRKYRMKLNPKKCAFG 1257
            YQRLV+K+F   +G  MEVYVDDM+ KS +  +HV  L ETF+ LRKY MKLNP+KCAFG
Sbjct: 826  YQRLVNKIFKPLIGHTMEVYVDDMITKSREPRDHVKHLEETFELLRKYEMKLNPEKCAFG 885

Query: 1258 VRSGKFLGYMVTEKGIEANPEKVRAIREMAPPRDAKDVQCLTGRLAALNRFISRLAERSL 1437
            V SGKFLGY+V+ +GIEANPEK+RA+ EM  PR  K+VQ LTG+LAALNRFISR  ++  
Sbjct: 886  VGSGKFLGYLVSHRGIEANPEKIRAVIEMRSPRTVKEVQSLTGKLAALNRFISRATDKCH 945

Query: 1438 PFFKVLRKAKKFVWDEEC 1491
            PFF+V++K KK  W  EC
Sbjct: 946  PFFQVIKKGKKMEWTPEC 963


>gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1980

 Score =  477 bits (1227), Expect = e-132
 Identities = 232/498 (46%), Positives = 332/498 (66%), Gaps = 1/498 (0%)
 Frame = +1

Query: 1    QRVFVDTGSSADILFYDCYKKMDL-QVGLETVDTALVGFAGGMIQPIGMITLPVSLGKEP 177
            QRV +D GSSAD+LFYD +KKM + +  L      L GF G  +  IG I+L V  GK  
Sbjct: 767  QRVLIDGGSSADVLFYDAFKKMQIPEDRLTNAGVPLQGFGGQQVHAIGKISLQVVFGKGT 826

Query: 178  NRKTRMIRFLIVDAPSSYNVMLGRPALNAFQAVVSVYHLKMKFPVGEKVGEVDGDQYMAR 357
            N +   I F +VD P  YN +LGR  +N F+A++   ++ MK P    V  V G+Q +AR
Sbjct: 827  NVRKEEIVFDVVDMPYQYNAILGRSTINIFEAIIHHNYICMKLPGPRGVITVRGEQLVAR 886

Query: 358  KLYVESIQKAERGSAFDDDRNKDKLVRLDEPVEHVQPNDEMMMVELVPGDPDKVTKVGKE 537
            K  ++     +     D  + + + +++ +P+    P  +   V+L   DP K   +G+ 
Sbjct: 887  KYELQGTPSVKGVHVVD--QKQGEYIKIQKPI----PEGKTKKVQLDEHDPGKFILIGEN 940

Query: 538  LTDELRDELVEFLRNNVDVFAWTAEDLVGIDPSIAEHRLNVNPSYKPVKQKKRNFGPKKD 717
            L   + +E+++ ++ N+ VFAW+ ++L G+D S+ EH L +   YKP KQK R     + 
Sbjct: 941  LEKHIEEEILKVVKENMAVFAWSPDELQGVDRSLIEHNLAIKSGYKPKKQKLRRMSTDRQ 1000

Query: 718  AIIRAEVQKLLKAGHIKEIQFPEWLSNAVLVPKTEDDWRMCVDFRDLNRACPKDYYPLPR 897
               + E++KLLKA  I+E+  PEWL+N VLV K    WRMC+DF DLN+ACPKD +PLPR
Sbjct: 1001 QAAKIELEKLLKAKVIREVMHPEWLANPVLVKKANGKWRMCIDFTDLNKACPKDDFPLPR 1060

Query: 898  IDQLVDSTSGCELLSMMDASQGYHQIRLAEEDQKRVCFTTSFGTFCYVVMPFGLKNAGAT 1077
            IDQLVD+T+GCEL+S +DA  GYHQ+ + +ED+++  F T FGT+C++ MPFGLKNAGAT
Sbjct: 1061 IDQLVDATAGCELMSFLDAYSGYHQVFMVKEDEEKTSFITPFGTYCFIRMPFGLKNAGAT 1120

Query: 1078 YQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVNHVHDLAETFDTLRKYRMKLNPKKCAFG 1257
            + RL+ K+  +QLGRN+E YVDD++VKS +A  H  DL ETF+ LRK  +KLNP+KC FG
Sbjct: 1121 FARLIGKVLAKQLGRNVEAYVDDIVVKSKQAFTHGKDLQETFENLRKCSVKLNPEKCVFG 1180

Query: 1258 VRSGKFLGYMVTEKGIEANPEKVRAIREMAPPRDAKDVQCLTGRLAALNRFISRLAERSL 1437
            VR+GK LG++V+++GIEANP+K+ AI +M PP++ ++VQ LTGR+A+L+RF+S+ AE+ L
Sbjct: 1181 VRAGKLLGFLVSKRGIEANPDKIAAIHQMEPPKNTREVQRLTGRMASLSRFLSKSAEKGL 1240

Query: 1438 PFFKVLRKAKKFVWDEEC 1491
            PFFK LR A  F W  EC
Sbjct: 1241 PFFKTLRGANTFEWTAEC 1258


>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  454 bits (1167), Expect = e-125
 Identities = 229/496 (46%), Positives = 322/496 (64%), Gaps = 1/496 (0%)
 Frame = +1

Query: 4    RVFVDTGSSADILFYDCYKKMDL-QVGLETVDTALVGFAGGMIQPIGMITLPVSLGKEPN 180
            RV +DTGSS D++F D    M++    ++ V   L GF G  +  IG I LP+ +G    
Sbjct: 631  RVLIDTGSSVDLIFKDVLTAMNITDRQIKPVSKPLAGFDGDFVMTIGTIKLPIFVGG--- 687

Query: 181  RKTRMIRFLIVDAPSSYNVMLGRPALNAFQAVVSVYHLKMKFPVGEKVGEVDGDQYMARK 360
                 ++F+++  P+ YNV+LG P ++  QA+ S YH  +KFP    +            
Sbjct: 688  -LIAWVKFVVIGKPAVYNVILGTPWIHQMQAIPSTYHQCVKFPTHNGI----------FT 736

Query: 361  LYVESIQKAERGSAFDDDRNKDKLVRLDEPVEHVQPNDEMMMVELVPGDPDKVTKVGKEL 540
            L      K    S  + +  + ++V +DE                   DP +   VG E+
Sbjct: 737  LRAPKEAKTPSRSYEESELCRTEMVNIDE------------------SDPTRCVGVGAEI 778

Query: 541  TDELRDELVEFLRNNVDVFAWTAEDLVGIDPSIAEHRLNVNPSYKPVKQKKRNFGPKKDA 720
            +  +R EL+  L+ N   FAW+ ED+ GIDP+I  H LNV+P++KPVKQK+R  GP++  
Sbjct: 779  SPSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNVDPTFKPVKQKRRKLGPERAR 838

Query: 721  IIRAEVQKLLKAGHIKEIQFPEWLSNAVLVPKTEDDWRMCVDFRDLNRACPKDYYPLPRI 900
             +  EV+KLLKAG I E+++PEWL+N V+V K    WR+CVD+ DLN+ACPKD YPLP I
Sbjct: 839  AVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVCVDYTDLNKACPKDSYPLPHI 898

Query: 901  DQLVDSTSGCELLSMMDASQGYHQIRLAEEDQKRVCFTTSFGTFCYVVMPFGLKNAGATY 1080
            D+LV++TSG  LLS MDA  GY+QI + ++DQ++  F T  GT+CY VM FGLKNAGATY
Sbjct: 899  DRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTDRGTYCYKVMSFGLKNAGATY 958

Query: 1081 QRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVNHVHDLAETFDTLRKYRMKLNPKKCAFGV 1260
            QR V+KM  +Q+GR +EVY+DDMLVKS+K  +HV  L++ FD L  Y MKLNP KC FGV
Sbjct: 959  QRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKCFDVLNTYGMKLNPTKCTFGV 1018

Query: 1261 RSGKFLGYMVTEKGIEANPEKVRAIREMAPPRDAKDVQCLTGRLAALNRFISRLAERSLP 1440
             SG+FLGY+VT++GIEANP+++RAI E+  PR+A++VQ LTGR+AALNRFISR  ++ LP
Sbjct: 1019 TSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRLTGRIAALNRFISRSTDKCLP 1078

Query: 1441 FFKVLRKAKKFVWDEE 1488
            F+ +L++  +F WD++
Sbjct: 1079 FYNLLKRRAQFDWDKD 1094


>ref|XP_006464891.1| PREDICTED: uncharacterized protein LOC102626228 [Citrus sinensis]
          Length = 1189

 Score =  453 bits (1165), Expect = e-124
 Identities = 226/462 (48%), Positives = 315/462 (68%), Gaps = 1/462 (0%)
 Frame = +1

Query: 4    RVFVDTGSSADILFYDCYKKMDL-QVGLETVDTALVGFAGGMIQPIGMITLPVSLGKEPN 180
            R+ +DTGSS D+LF    ++M +    LE  +T+L GF GG + P+G++ LP+++G  P 
Sbjct: 577  RILIDTGSSVDVLFKSTLEEMGIADRKLEYTNTSLKGFGGGKLVPLGVVELPITIGSSPT 636

Query: 181  RKTRMIRFLIVDAPSSYNVMLGRPALNAFQAVVSVYHLKMKFPVGEKVGEVDGDQYMARK 360
             +T ++ F++VD    Y ++LGRP L   +AV+S ++L +K+ V   VG V G Q +AR 
Sbjct: 637  ERTMILDFVVVDEEGPYQMILGRPFLRMSKAVLSNHYLALKYRVNGIVGVVRGGQRIARG 696

Query: 361  LYVESIQKAERGSAFDDDRNKDKLVRLDEPVEHVQPNDEMMMVELVPGDPDKVTKVGKEL 540
             Y  ++++A + ++ D         R++      +P +++  V L P +P K  ++G  L
Sbjct: 697  CYSSAVREAMQITSLD--------TRVENKKGRQEPVEDLETVSLGPENPGKTIRIGSRL 748

Query: 541  TDELRDELVEFLRNNVDVFAWTAEDLVGIDPSIAEHRLNVNPSYKPVKQKKRNFGPKKDA 720
              E + ELV+ L+ + DVFAWT ED+ GIDP +A HRL +    + V+QK+R F  ++  
Sbjct: 749  EGEQKQELVKCLQAHADVFAWTHEDMPGIDPEVACHRLAIKKGARAVRQKRRCFNQERYE 808

Query: 721  IIRAEVQKLLKAGHIKEIQFPEWLSNAVLVPKTEDDWRMCVDFRDLNRACPKDYYPLPRI 900
             I  EV+KLL+AG I+E+ +PEW+SN VLV K    WRMCVDF DLN+ACPKD +PLP+I
Sbjct: 809  AINGEVEKLLRAGFIREVSYPEWISNVVLVKKANGKWRMCVDFTDLNKACPKDSFPLPKI 868

Query: 901  DQLVDSTSGCELLSMMDASQGYHQIRLAEEDQKRVCFTTSFGTFCYVVMPFGLKNAGATY 1080
            DQLVDST+G  LLS MDA  GY+QI + E D++   F T+ G FCY VMPFGLKNAGATY
Sbjct: 869  DQLVDSTAGHGLLSFMDAFSGYNQIPMYEPDEESTAFITNQGLFCYRVMPFGLKNAGATY 928

Query: 1081 QRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVNHVHDLAETFDTLRKYRMKLNPKKCAFGV 1260
            QRLV+K+F   +G+ MEVYVDDM+ KS     HV  L ETF+ LRKY+MKLNP+KCAFGV
Sbjct: 929  QRLVNKVFKPLIGKTMEVYVDDMITKSKVPKEHVRHLEETFELLRKYKMKLNPEKCAFGV 988

Query: 1261 RSGKFLGYMVTEKGIEANPEKVRAIREMAPPRDAKDVQCLTG 1386
             SGKFLG+MV+ +GIEANPEK++AI +M  PR+ K++Q LTG
Sbjct: 989  ESGKFLGFMVSHRGIEANPEKIQAIVQMTSPRNLKEMQSLTG 1030


>ref|XP_006488688.1| PREDICTED: uncharacterized protein LOC102623105 [Citrus sinensis]
          Length = 1407

 Score =  452 bits (1164), Expect = e-124
 Identities = 236/497 (47%), Positives = 324/497 (65%), Gaps = 1/497 (0%)
 Frame = +1

Query: 4    RVFVDTGSSADILFYDCYKKMDL-QVGLETVDTALVGFAGGMIQPIGMITLPVSLGKEPN 180
            R+ VDT SS D+LF    ++M +    LE  +T+L GF GG + P+G++ LP+++G  P 
Sbjct: 686  RILVDTWSSVDVLFKSTLEEMGIADRKLEYTNTSLKGFGGGKLVPLGVVKLPITVGSPPT 745

Query: 181  RKTRMIRFLIVDAPSSYNVMLGRPALNAFQAVVSVYHLKMKFPVGEKVGEVDGDQYMARK 360
             +T ++ F++VD    Y ++LGRP L   +AV+S ++L +K+ V   VG V GDQ +AR 
Sbjct: 746  ERTMILDFVVVDEEGPYQMILGRPFLRMSKAVLSNHYLALKYRVNGVVGVVRGDQRIARS 805

Query: 361  LYVESIQKAERGSAFDDDRNKDKLVRLDEPVEHVQPNDEMMMVELVPGDPDKVTKVGKEL 540
             Y  + ++A + ++ D  R ++K  R  EPVE ++                         
Sbjct: 806  CYSSAAREAMQITSLDT-RVENKTGR-QEPVEDLETA----------------------- 840

Query: 541  TDELRDELVEFLRNNVDVFAWTAEDLVGIDPSIAEHRLNVNPSYKPVKQKKRNFGPKKDA 720
                          + DVFAWT ED+ GIDP +A H+L +    + V+QK+R F  ++  
Sbjct: 841  --------------HADVFAWTHEDMPGIDPEVACHKLAMKKGARAVRQKRRCFNQERYE 886

Query: 721  IIRAEVQKLLKAGHIKEIQFPEWLSNAVLVPKTEDDWRMCVDFRDLNRACPKDYYPLPRI 900
             +  EV+KLL+AG I+E+ +PEW+SN VLV K    WRMCVDF DLN+ACPKD +PLP+I
Sbjct: 887  AVNDEVEKLLRAGFIREVNYPEWISNVVLVKKANGKWRMCVDFTDLNKACPKDSFPLPKI 946

Query: 901  DQLVDSTSGCELLSMMDASQGYHQIRLAEEDQKRVCFTTSFGTFCYVVMPFGLKNAGATY 1080
            DQLVDST+G  LLS MDA  GY+QI + E D++   F T+ G FCY VMPFGLKNAGATY
Sbjct: 947  DQLVDSTAGHGLLSFMDAFSGYNQIPMYEPDEESTAFITNQGLFCYRVMPFGLKNAGATY 1006

Query: 1081 QRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVNHVHDLAETFDTLRKYRMKLNPKKCAFGV 1260
            QRLV+K+F   +G+ MEVYVDDM+ KS     HV  L ETF+ LRKY+MKLNP+KCAFGV
Sbjct: 1007 QRLVNKVFKPLIGKTMEVYVDDMITKSKVPKEHVRHLEETFELLRKYKMKLNPEKCAFGV 1066

Query: 1261 RSGKFLGYMVTEKGIEANPEKVRAIREMAPPRDAKDVQCLTGRLAALNRFISRLAERSLP 1440
             SGKFLG+MV+ +GIEANPEK++AI +M  PR+ K++Q LTGRLAAL+RFIS+  ++  P
Sbjct: 1067 ESGKFLGFMVSHRGIEANPEKIQAIVQMTSPRNLKEMQSLTGRLAALSRFISKATDKCQP 1126

Query: 1441 FFKVLRKAKKFVWDEEC 1491
            FF+V+R+ KK  W   C
Sbjct: 1127 FFQVMRRGKKTEWTPGC 1143


>emb|CAE03952.2| OSJNBb0085H11.1 [Oryza sativa Japonica Group]
          Length = 1605

 Score =  439 bits (1129), Expect = e-120
 Identities = 230/498 (46%), Positives = 319/498 (64%), Gaps = 1/498 (0%)
 Frame = +1

Query: 1    QRVFVDTGSSADILFYDCYKKMDLQV-GLETVDTALVGFAGGMIQPIGMITLPVSLGKEP 177
            +R+ V  GSSAD++F + Y KM L    L     +L GF G  +Q +G   L ++LG   
Sbjct: 511  RRILVGRGSSADVIFAEAYAKMGLPTQALTPAPASLRGFGGEAVQVLGQALLLIALGSGE 570

Query: 178  NRKTRMIRFLIVDAPSSYNVMLGRPALNAFQAVVSVYHLKMKFPVGEKVGEVDGDQYMAR 357
            NR+   + F +VD P +YN + GR  LN F+A+    +LK+K P    V  V G Q  A 
Sbjct: 571  NRREEQVLFDVVDIPYNYNAIFGRATLNKFEAISHHNYLKLKMPGLTGVIVVKGLQPSAA 630

Query: 358  KLYVESIQKAERGSAFDDDRNKDKLVRLDEPVEHVQPNDEMMMVELVPGDPDKVTKVGKE 537
                 +I   E  +   +  ++ K     +P     P+ +++ V++   +P K+  +G +
Sbjct: 631  SKGDLAIINREVHNVEAEPYDRPK--HAPKPT----PHSKIIKVQIDDANPTKLVSLGDD 684

Query: 538  LTDELRDELVEFLRNNVDVFAWTAEDLVGIDPSIAEHRLNVNPSYKPVKQKKRNFGPKKD 717
            + +E    ++E L+ N+D+FAW+ +++ G+   +  H L V    KP KQK R     + 
Sbjct: 685  MGEEEAGSILEVLKKNIDIFAWSPDEVGGVWTDLIMHHLAVKLDAKPRKQKLRKMSADRQ 744

Query: 718  AIIRAEVQKLLKAGHIKEIQFPEWLSNAVLVPKTEDDWRMCVDFRDLNRACPKDYYPLPR 897
              ++AEVQKLL+AG I+EI  PEWL+N VLV K+    RMCVDF DLN+ACPKD +PLPR
Sbjct: 745  EAVKAEVQKLLRAGVIQEIDHPEWLANPVLVRKSTSKKRMCVDFTDLNKACPKDDFPLPR 804

Query: 898  IDQLVDSTSGCELLSMMDASQGYHQIRLAEEDQKRVCFTTSFGTFCYVVMPFGLKNAGAT 1077
            IDQLVDST+GCEL+S +DA  GYHQI +   D  +  F T FGTFC++ MPFGL+N GAT
Sbjct: 805  IDQLVDSTAGCELMSFLDAYSGYHQIHMNPPDIPKTAFITPFGTFCHLRMPFGLRNTGAT 864

Query: 1078 YQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVNHVHDLAETFDTLRKYRMKLNPKKCAFG 1257
            + RLV K+  +QLGRN+E YVDD++VKS KA +HV +L ETFD LR   +KLNP+KC FG
Sbjct: 865  FARLVYKVLCKQLGRNVEAYVDDIVVKSRKAFDHVSNLQETFDNLRAAGIKLNPEKCVFG 924

Query: 1258 VRSGKFLGYMVTEKGIEANPEKVRAIREMAPPRDAKDVQCLTGRLAALNRFISRLAERSL 1437
            VR+GK LG++V+EKGIEANP+K+ AI++M PP    +VQ L GR+ AL+RF+S+ AER L
Sbjct: 925  VRAGKLLGFLVSEKGIEANPKKIDAIQQMKPPSSVHEVQKLAGRIVALSRFLSKAAERGL 984

Query: 1438 PFFKVLRKAKKFVWDEEC 1491
            PFFK LR + KF W  EC
Sbjct: 985  PFFKTLRGSGKFNWTPEC 1002


>gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1889

 Score =  439 bits (1128), Expect = e-120
 Identities = 222/498 (44%), Positives = 314/498 (63%), Gaps = 1/498 (0%)
 Frame = +1

Query: 1    QRVFVDTGSSADILFYDCYKKMDL-QVGLETVDTALVGFAGGMIQPIGMITLPVSLGKEP 177
            QRV +D GSSAD+LFYD +KKM + +  L      L GF G  +  IG I+L V  GK  
Sbjct: 767  QRVLIDGGSSADVLFYDAFKKMQIPEDRLTNAGVPLQGFGGQQVHAIGKISLQVVFGKGT 826

Query: 178  NRKTRMIRFLIVDAPSSYNVMLGRPALNAFQAVVSVYHLKMKFPVGEKVGEVDGDQYMAR 357
            N +   I F +VD P  YN +LGR  +N F+A++   ++ MK P    V  V G+Q  AR
Sbjct: 827  NVRKEEIVFDVVDMPYQYNAILGRSTINIFEAIIHHNYICMKLPGPRGVITVRGEQLAAR 886

Query: 358  KLYVESIQKAERGSAFDDDRNKDKLVRLDEPVEHVQPNDEMMMVELVPGDPDKVTKVGKE 537
            K  ++     +     D  + + + +++ +P+    P  +   V+L   DP K   +G+ 
Sbjct: 887  KYELQGTPSVKGVHVVD--QKQGEYIKIQKPI----PEGKTKKVQLDEHDPGKFILIGEN 940

Query: 538  LTDELRDELVEFLRNNVDVFAWTAEDLVGIDPSIAEHRLNVNPSYKPVKQKKRNFGPKKD 717
            L   + +E+++ ++ N+ VFAW+ ++L G+D S+ EH L +   YKP KQK R     + 
Sbjct: 941  LEKHIEEEILKVVKENMAVFAWSPDELQGVDRSLIEHNLAIKSGYKPKKQKLRRMSTDRQ 1000

Query: 718  AIIRAEVQKLLKAGHIKEIQFPEWLSNAVLVPKTEDDWRMCVDFRDLNRACPKDYYPLPR 897
               + E++KLLKA  I+E+  PEWL+N VLV K    WRMC+DF DLN+ACPKD +PLPR
Sbjct: 1001 QAAKIELEKLLKAKVIREVMHPEWLANPVLVKKANGKWRMCIDFTDLNKACPKDDFPLPR 1060

Query: 898  IDQLVDSTSGCELLSMMDASQGYHQIRLAEEDQKRVCFTTSFGTFCYVVMPFGLKNAGAT 1077
            IDQLVD+T+GCEL+S +DA  GYHQ+ + +ED+++  F T FG++C++ MPFGLKNAGAT
Sbjct: 1061 IDQLVDATAGCELMSFLDAYSGYHQVFMVKEDEEKTSFITPFGSYCFIRMPFGLKNAGAT 1120

Query: 1078 YQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVNHVHDLAETFDTLRKYRMKLNPKKCAFG 1257
            + RL+ K+  +QLGRN+E YVDD++VKS +A  H  DL E F+ LRK  +KLNP      
Sbjct: 1121 FARLIGKVLAKQLGRNVEAYVDDIVVKSKQAFTHGKDLQEMFENLRKCSVKLNP------ 1174

Query: 1258 VRSGKFLGYMVTEKGIEANPEKVRAIREMAPPRDAKDVQCLTGRLAALNRFISRLAERSL 1437
                        EKGIEANP+K+ AI +M PPR+ ++VQ LTGR+A+L+RF+S+ AE+ L
Sbjct: 1175 ------------EKGIEANPDKIAAIHQMEPPRNTREVQRLTGRMASLSRFLSKSAEKGL 1222

Query: 1438 PFFKVLRKAKKFVWDEEC 1491
            PFFK LR A  F W  EC
Sbjct: 1223 PFFKTLRGANTFEWTAEC 1240


>emb|CAD40452.2| OSJNBa0041M21.10 [Oryza sativa Japonica Group]
            gi|38343994|emb|CAD40359.2| OSJNBa0093P23.5 [Oryza sativa
            Japonica Group]
          Length = 2074

 Score =  438 bits (1126), Expect = e-120
 Identities = 229/498 (45%), Positives = 315/498 (63%), Gaps = 1/498 (0%)
 Frame = +1

Query: 1    QRVFVDTGSSADILFYDCYKKMDLQV-GLETVDTALVGFAGGMIQPIGMITLPVSLGKEP 177
            +R+ VD GSSAD+++ + Y KM L    L    T+L GF+G  +Q +G   L ++ G   
Sbjct: 1480 RRILVDGGSSADVIYAEAYAKMGLPTQALTPALTSLRGFSGEAVQVLGQALLLIAFGSGE 1539

Query: 178  NRKTRMIRFLIVDAPSSYNVMLGRPALNAFQAVVSVYHLKMKFPVGEKVGEVDGDQYMAR 357
            NR+   I F +V+ P +YN + GR  LN  +A+    +LK+K P    V  V G Q  A 
Sbjct: 1540 NRREEQILFDVVNIPYNYNAIFGRATLNKLEAISHHNYLKLKMPGPTGVIVVKGLQPSAA 1599

Query: 358  KLYVESIQKAERGSAFDDDRNKDKLVRLDEPVEHVQPNDEMMMVELVPGDPDKVTKVGKE 537
                 +I      +   +   + K     +P     P+ ++  V++   DP K+  +G +
Sbjct: 1600 SKCDLAIINRAVHNVKTEPHERPK--HTPKPT----PHGKVTKVQINDADPTKLVSLGGD 1653

Query: 538  LTDELRDELVEFLRNNVDVFAWTAEDLVGIDPSIAEHRLNVNPSYKPVKQKKRNFGPKKD 717
            + +E  + ++E L+ N+D+FAW+ +++ G+   +  H L V P+ KP KQK R     + 
Sbjct: 1654 MGEEEVESILEVLKKNIDIFAWSPDEVGGVPADLIMHHLAVKPNIKPRKQKLRKMSADRQ 1713

Query: 718  AIIRAEVQKLLKAGHIKEIQFPEWLSNAVLVPKTEDDWRMCVDFRDLNRACPKDYYPLPR 897
               + EVQKLL+AG I+EI  PEWL+N VLV K+   WRMCVDF DLN+ACPK  +PLPR
Sbjct: 1714 EATKTEVQKLLRAGVIQEIDHPEWLANPVLVRKSNGKWRMCVDFTDLNKACPKHDFPLPR 1773

Query: 898  IDQLVDSTSGCELLSMMDASQGYHQIRLAEEDQKRVCFTTSFGTFCYVVMPFGLKNAGAT 1077
            IDQLVD T+GCEL+S +DA  GYHQI +   D  +  F T FGTFC++ MPFGL+NAGAT
Sbjct: 1774 IDQLVDLTAGCELMSFLDAYSGYHQIHMNPLDIPKTSFITPFGTFCHLRMPFGLRNAGAT 1833

Query: 1078 YQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVNHVHDLAETFDTLRKYRMKLNPKKCAFG 1257
            + RLV K+ G+QLGRN+E YVDD++VKS KA +H  DL ETFD L    +KLNP+KC F 
Sbjct: 1834 FARLVYKVLGKQLGRNVEAYVDDIVVKSRKAFDHAIDLQETFDNLCVAGIKLNPEKCVFS 1893

Query: 1258 VRSGKFLGYMVTEKGIEANPEKVRAIREMAPPRDAKDVQCLTGRLAALNRFISRLAERSL 1437
            VR GK LG++V+E GIEANPEK+ AI++M PP    +VQ L GR+AAL+RF+S+  ER L
Sbjct: 1894 VRVGKLLGFLVSETGIEANPEKIDAIQQMKPPSSIHEVQKLAGRIAALSRFLSKAVERGL 1953

Query: 1438 PFFKVLRKAKKFVWDEEC 1491
            PFFK LR A+KF W  EC
Sbjct: 1954 PFFKTLRDARKFNWTPEC 1971


>emb|CAH66268.1| OSIGBa0136B09.4 [Oryza sativa Indica Group]
          Length = 1348

 Score =  438 bits (1126), Expect = e-120
 Identities = 229/498 (45%), Positives = 315/498 (63%), Gaps = 1/498 (0%)
 Frame = +1

Query: 1    QRVFVDTGSSADILFYDCYKKMDLQV-GLETVDTALVGFAGGMIQPIGMITLPVSLGKEP 177
            +R+ VD GSSAD+++ + Y KM L    L    T+L GF+G  +Q +G   L ++ G   
Sbjct: 754  RRILVDGGSSADVIYAEAYAKMGLPTQALTPALTSLRGFSGEAVQVLGQALLLIAFGSGE 813

Query: 178  NRKTRMIRFLIVDAPSSYNVMLGRPALNAFQAVVSVYHLKMKFPVGEKVGEVDGDQYMAR 357
            NR+   I F +V+ P +YN + GR  LN  +A+    +LK+K P    V  V G Q  A 
Sbjct: 814  NRREEQILFDVVNIPYNYNAIFGRATLNKLEAISHHNYLKLKMPGPTGVIVVKGLQPSAA 873

Query: 358  KLYVESIQKAERGSAFDDDRNKDKLVRLDEPVEHVQPNDEMMMVELVPGDPDKVTKVGKE 537
                 +I      +   +   + K     +P     P+ ++  V++   DP K+  +G +
Sbjct: 874  SKCDLAIINRAVHNVKTEPHERPK--HTPKPT----PHGKVTKVQINDADPTKLVSLGGD 927

Query: 538  LTDELRDELVEFLRNNVDVFAWTAEDLVGIDPSIAEHRLNVNPSYKPVKQKKRNFGPKKD 717
            + +E  + ++E L+ N+D+FAW+ +++ G+   +  H L V P+ KP KQK R     + 
Sbjct: 928  MGEEEVESILEVLKKNIDIFAWSPDEVGGVPADLIMHHLAVKPNIKPRKQKLRKMSADRQ 987

Query: 718  AIIRAEVQKLLKAGHIKEIQFPEWLSNAVLVPKTEDDWRMCVDFRDLNRACPKDYYPLPR 897
               + EVQKLL+AG I+EI  PEWL+N VLV K+   WRMCVDF DLN+ACPK  +PLPR
Sbjct: 988  EATKTEVQKLLRAGVIQEIDHPEWLANPVLVRKSNGKWRMCVDFTDLNKACPKHDFPLPR 1047

Query: 898  IDQLVDSTSGCELLSMMDASQGYHQIRLAEEDQKRVCFTTSFGTFCYVVMPFGLKNAGAT 1077
            IDQLVD T+GCEL+S +DA  GYHQI +   D  +  F T FGTFC++ MPFGL+NAGAT
Sbjct: 1048 IDQLVDLTAGCELMSFLDAYSGYHQIHMNPLDIPKTSFITPFGTFCHLRMPFGLRNAGAT 1107

Query: 1078 YQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVNHVHDLAETFDTLRKYRMKLNPKKCAFG 1257
            + RLV K+ G+QLGRN+E YVDD++VKS KA +H  DL ETFD L    +KLNP+KC F 
Sbjct: 1108 FARLVYKVLGKQLGRNVEAYVDDIVVKSRKAFDHAIDLQETFDNLCVAGIKLNPEKCVFS 1167

Query: 1258 VRSGKFLGYMVTEKGIEANPEKVRAIREMAPPRDAKDVQCLTGRLAALNRFISRLAERSL 1437
            VR GK LG++V+E GIEANPEK+ AI++M PP    +VQ L GR+AAL+RF+S+  ER L
Sbjct: 1168 VRVGKLLGFLVSEAGIEANPEKIDAIQQMKPPSSIHEVQKLAGRIAALSRFLSKAVERGL 1227

Query: 1438 PFFKVLRKAKKFVWDEEC 1491
            PFFK LR A+KF W  EC
Sbjct: 1228 PFFKTLRDARKFNWTPEC 1245


>gb|ABF97503.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1172

 Score =  438 bits (1126), Expect = e-120
 Identities = 234/501 (46%), Positives = 317/501 (63%), Gaps = 4/501 (0%)
 Frame = +1

Query: 1    QRVFVDTGSSADILFYDCYKKMDLQV-GLETVDTALVGFAGGMIQPIGMITLPVSLGKEP 177
            +R+ VD GSS D++F + Y KM L    L    T+L GF G  +Q +G   L V+ G   
Sbjct: 387  RRILVDGGSSTDVIFAEAYAKMGLTTQALTPAPTSLRGFGGEAVQVLGQAQLIVAFGTGE 446

Query: 178  NRKTRMIRFLIVDAPSSYNVMLGRPALNAFQAVVSVYHLKMKFPVGEKVGEVDG-DQYMA 354
            NR+   + F +VD P +YN + GR  LN F+ +    +LK+K      V  + G     A
Sbjct: 447  NRREEQVLFDVVDIPYNYNAIFGRATLNKFEVISHHNYLKLKMSGPAGVIVIKGLHPSAA 506

Query: 355  RKLYVESIQKAERG-SAFDDDRNKDKLVRLDEPVEHVQPNDEMMMVELVPGDPDKVTKVG 531
             K  +  I KA     A   DR K         V    P+ +++ +++   DP K+  +G
Sbjct: 507  SKGDLAIINKAVHNVEAEPHDRAKH--------VPKPAPHGKIIKMQIDDADPIKLVSLG 558

Query: 532  K-ELTDELRDELVEFLRNNVDVFAWTAEDLVGIDPSIAEHRLNVNPSYKPVKQKKRNFGP 708
              ++ +E    ++E L+ N+D+FAW  +++ G+   +  H L V P  KP KQK      
Sbjct: 559  GGDMGEEEAKNILEVLKKNIDIFAWGPDEVGGVSADLIMHHLAVKPDAKPRKQKLCKMSA 618

Query: 709  KKDAIIRAEVQKLLKAGHIKEIQFPEWLSNAVLVPKTEDDWRMCVDFRDLNRACPKDYYP 888
             +    +AEVQKLLKAG I+EI  PEWL+N+VLV K+   WRMCVDF DLN+ACPKD +P
Sbjct: 619  DRQEAAKAEVQKLLKAGVIQEIDHPEWLANSVLVRKSNGKWRMCVDFTDLNKACPKDDFP 678

Query: 889  LPRIDQLVDSTSGCELLSMMDASQGYHQIRLAEEDQKRVCFTTSFGTFCYVVMPFGLKNA 1068
            LPRID+LVDST+GCEL+S +DA  GYHQIR+   D  +  F T FGTFC++ MPFGL+NA
Sbjct: 679  LPRIDRLVDSTAGCELMSFLDAYSGYHQIRMNPADIPKTAFITPFGTFCHLRMPFGLRNA 738

Query: 1069 GATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVNHVHDLAETFDTLRKYRMKLNPKKC 1248
            GAT+ RLV K+  +QLG+N+E YVDD++VKS KA +H  DL ETFD L    MKLNP+KC
Sbjct: 739  GATFARLVYKVLYKQLGQNVEAYVDDIVVKSRKAFDHASDLQETFDNLHAAGMKLNPEKC 798

Query: 1249 AFGVRSGKFLGYMVTEKGIEANPEKVRAIREMAPPRDAKDVQCLTGRLAALNRFISRLAE 1428
             FGVR+GK LG++V+E+GIEANPEK+ AI+++ PP   ++VQ L GR+AAL+RF+S+ AE
Sbjct: 799  VFGVRAGKLLGFLVSERGIEANPEKIDAIQQIKPPSSVREVQKLAGRIAALSRFLSKAAE 858

Query: 1429 RSLPFFKVLRKAKKFVWDEEC 1491
            R L FFK LR A KF W  EC
Sbjct: 859  RGLLFFKTLRGAGKFNWTPEC 879


>gb|AAT81681.1| putative retrotransposon protein [Oryza sativa Japonica Group]
          Length = 1168

 Score =  438 bits (1126), Expect = e-120
 Identities = 234/501 (46%), Positives = 317/501 (63%), Gaps = 4/501 (0%)
 Frame = +1

Query: 1    QRVFVDTGSSADILFYDCYKKMDLQV-GLETVDTALVGFAGGMIQPIGMITLPVSLGKEP 177
            +R+ VD GSS D++F + Y KM L    L    T+L GF G  +Q +G   L V+ G   
Sbjct: 383  RRILVDGGSSTDVIFAEAYAKMGLTTQALTPAPTSLRGFGGEAVQVLGQAQLIVAFGTGE 442

Query: 178  NRKTRMIRFLIVDAPSSYNVMLGRPALNAFQAVVSVYHLKMKFPVGEKVGEVDG-DQYMA 354
            NR+   + F +VD P +YN + GR  LN F+ +    +LK+K      V  + G     A
Sbjct: 443  NRREEQVLFDVVDIPYNYNAIFGRATLNKFEVISHHNYLKLKMSGPAGVIVIKGLHPSAA 502

Query: 355  RKLYVESIQKAERG-SAFDDDRNKDKLVRLDEPVEHVQPNDEMMMVELVPGDPDKVTKVG 531
             K  +  I KA     A   DR K         V    P+ +++ +++   DP K+  +G
Sbjct: 503  SKGDLAIINKAVHNVEAEPHDRAKH--------VPKPAPHGKIIKMQIDDADPIKLVSLG 554

Query: 532  K-ELTDELRDELVEFLRNNVDVFAWTAEDLVGIDPSIAEHRLNVNPSYKPVKQKKRNFGP 708
              ++ +E    ++E L+ N+D+FAW  +++ G+   +  H L V P  KP KQK      
Sbjct: 555  GGDMGEEEAKNILEVLKKNIDIFAWGPDEVGGVSADLIMHHLAVKPDAKPRKQKLCKMSA 614

Query: 709  KKDAIIRAEVQKLLKAGHIKEIQFPEWLSNAVLVPKTEDDWRMCVDFRDLNRACPKDYYP 888
             +    +AEVQKLLKAG I+EI  PEWL+N+VLV K+   WRMCVDF DLN+ACPKD +P
Sbjct: 615  DRQEAAKAEVQKLLKAGVIQEIDHPEWLANSVLVRKSNGKWRMCVDFTDLNKACPKDDFP 674

Query: 889  LPRIDQLVDSTSGCELLSMMDASQGYHQIRLAEEDQKRVCFTTSFGTFCYVVMPFGLKNA 1068
            LPRID+LVDST+GCEL+S +DA  GYHQIR+   D  +  F T FGTFC++ MPFGL+NA
Sbjct: 675  LPRIDRLVDSTAGCELMSFLDAYSGYHQIRMNPADIPKTAFITPFGTFCHLRMPFGLRNA 734

Query: 1069 GATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVNHVHDLAETFDTLRKYRMKLNPKKC 1248
            GAT+ RLV K+  +QLG+N+E YVDD++VKS KA +H  DL ETFD L    MKLNP+KC
Sbjct: 735  GATFARLVYKVLYKQLGQNVEAYVDDIVVKSRKAFDHASDLQETFDNLHAAGMKLNPEKC 794

Query: 1249 AFGVRSGKFLGYMVTEKGIEANPEKVRAIREMAPPRDAKDVQCLTGRLAALNRFISRLAE 1428
             FGVR+GK LG++V+E+GIEANPEK+ AI+++ PP   ++VQ L GR+AAL+RF+S+ AE
Sbjct: 795  VFGVRAGKLLGFLVSERGIEANPEKIDAIQQIKPPSSVREVQKLAGRIAALSRFLSKAAE 854

Query: 1429 RSLPFFKVLRKAKKFVWDEEC 1491
            R L FFK LR A KF W  EC
Sbjct: 855  RGLLFFKTLRGAGKFNWTPEC 875


>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1859

 Score =  438 bits (1126), Expect = e-120
 Identities = 230/524 (43%), Positives = 327/524 (62%), Gaps = 28/524 (5%)
 Frame = +1

Query: 4    RVFVDTGSSADILFYDCYKKMDL-QVGLETVDTALVGFAGGMIQPIGMITLPVSLGKEPN 180
            +V VD GSS DIL+++ +KKM + +  ++  +  +VGF+   +   G I L  + G +  
Sbjct: 653  KVLVDQGSSVDILYWETFKKMKIPEAEIQPYNEQIVGFSRERVDTKGFIDLYTTFGDDYL 712

Query: 181  RKTRMIRFLIVDAPSSYNVMLGRPALNAFQAVVSVYHLKMKFP-VGEKVGEVDGDQYMAR 357
             KT  IR+L+V+A +SYN++LGRP++N  +A+VS  HL MKFP V   +  V  DQ  AR
Sbjct: 713  SKTINIRYLLVNANTSYNILLGRPSINRLKAIVSTPHLAMKFPSVNGDIATVHIDQKTAR 772

Query: 358  KLYVESIQ---------------------KAERGSAFDDDRNK-----DKLVRLDEPVEH 459
            + YV S++                       ER S   + R       D   RLD+P   
Sbjct: 773  ECYVASLKVEPTRRLYTTSAERTTERRGRSTERRSRGRESRRHLVALVDLDPRLDDP--R 830

Query: 460  VQPNDEMMMVELVPGDPDKVTKVGKELTDELRDELVEFLRNNVDVFAWTAEDLVGIDPSI 639
            ++  +++  + L   D D+ T +G  L  + R+ + + L  N D+FAWTA D+ G+   +
Sbjct: 831  MEAGEDLQPIFL--RDKDRKTYMGTSLKPDDRETIGKTLTKNADLFAWTAADMPGVKSDV 888

Query: 640  AEHRLNVNPSYKPVKQKKRNFGPKKDAIIRAEVQKLLKAGHIKEIQFPEWLSNAVLVPKT 819
              HRL+V    +P+ QKKR  G ++    R E  KL++AG I++  +  WL+N V+V KT
Sbjct: 889  ITHRLSVYTEARPIAQKKRKLGEERRKAAREETDKLIQAGFIQKAHYTTWLANVVMVKKT 948

Query: 820  EDDWRMCVDFRDLNRACPKDYYPLPRIDQLVDSTSGCELLSMMDASQGYHQIRLAEEDQK 999
               WRMCVD+ DLN+ACPKD YPLP ID+LVD  +G ++LS +DA  GY+QI++   D++
Sbjct: 949  NGKWRMCVDYTDLNKACPKDSYPLPTIDRLVDGAAGHQILSFLDAYSGYNQIQMYHRDRE 1008

Query: 1000 RVCFTTSFGTFCYVVMPFGLKNAGATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVNH 1179
            +  F T    F Y VMPFGLKNAGATYQRL+D +F + +GRN+EVYVDD++VKS     H
Sbjct: 1009 KTAFRTDSDNFFYEVMPFGLKNAGATYQRLMDHVFHDMIGRNVEVYVDDIVVKSDSCEQH 1068

Query: 1180 VHDLAETFDTLRKYRMKLNPKKCAFGVRSGKFLGYMVTEKGIEANPEKVRAIREMAPPRD 1359
            V DL E F  LR+YRM+LNP+KCAFGV  GKFLG+M+T +GIEANPEK +AI EM  P+ 
Sbjct: 1069 VSDLKEVFQALRQYRMRLNPEKCAFGVEGGKFLGFMLTHRGIEANPEKCKAITEMRSPKG 1128

Query: 1360 AKDVQCLTGRLAALNRFISRLAERSLPFFKVLRKAKKFVWDEEC 1491
             K++Q L  RL +L+RF+ +LAER+ P  K+L+K  KF W +EC
Sbjct: 1129 LKEIQRLVSRLTSLSRFVPKLAERTRPIIKLLKKTSKFEWTDEC 1172


>emb|CAH68043.1| OSIGBa0139N19-OSIGBa0137L10.12 [Oryza sativa Indica Group]
          Length = 1650

 Score =  437 bits (1125), Expect = e-120
 Identities = 229/498 (45%), Positives = 318/498 (63%), Gaps = 1/498 (0%)
 Frame = +1

Query: 1    QRVFVDTGSSADILFYDCYKKMDLQV-GLETVDTALVGFAGGMIQPIGMITLPVSLGKEP 177
            +R+ V  GSSAD++F + Y KM L    L     +L GF G  +Q +G   L ++ G   
Sbjct: 556  RRILVGRGSSADVIFAEAYAKMGLPTQALTPAPASLRGFGGEAVQVLGQALLLIAFGSGE 615

Query: 178  NRKTRMIRFLIVDAPSSYNVMLGRPALNAFQAVVSVYHLKMKFPVGEKVGEVDGDQYMAR 357
            NR+   + F +VD P +YN + GR  LN F+A+    +LK+K P    V  V G Q  A 
Sbjct: 616  NRREEQVLFDVVDIPYNYNAIFGRATLNKFEAISHHNYLKLKMPGLTGVIVVKGLQPSAA 675

Query: 358  KLYVESIQKAERGSAFDDDRNKDKLVRLDEPVEHVQPNDEMMMVELVPGDPDKVTKVGKE 537
                 +I   E  +   +  ++ K     +P     P+ +++ V++   +P K+  +G +
Sbjct: 676  SKGDLAIINREVHNVEAEPYDRPK--HAPKPT----PHSKIIKVQIDDANPTKLVSLGDD 729

Query: 538  LTDELRDELVEFLRNNVDVFAWTAEDLVGIDPSIAEHRLNVNPSYKPVKQKKRNFGPKKD 717
            + +E    ++E L+ N+D+FAW+ +++ G+   +  H L V    KP KQK R     + 
Sbjct: 730  MGEEEAGSILEVLKKNIDIFAWSPDEVGGVWTDLIMHHLAVKLDAKPRKQKLRKMSADRQ 789

Query: 718  AIIRAEVQKLLKAGHIKEIQFPEWLSNAVLVPKTEDDWRMCVDFRDLNRACPKDYYPLPR 897
              ++AEVQKLL+AG I+EI  PEWL+N VLV K+    RMCVDF DLN+ACPKD +PLPR
Sbjct: 790  EAVKAEVQKLLRAGVIQEIDHPEWLANPVLVRKSTSKKRMCVDFTDLNKACPKDDFPLPR 849

Query: 898  IDQLVDSTSGCELLSMMDASQGYHQIRLAEEDQKRVCFTTSFGTFCYVVMPFGLKNAGAT 1077
            IDQLVDST+GCEL+S +DA  GYHQI +   D  +  F T FGTFC++ MPFGL+N GAT
Sbjct: 850  IDQLVDSTAGCELMSFLDAYSGYHQIHMNPPDIPKTAFITPFGTFCHLRMPFGLRNTGAT 909

Query: 1078 YQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVNHVHDLAETFDTLRKYRMKLNPKKCAFG 1257
            + RLV K+  +QLGRN+E YVDD++VKS KA +HV +L ETFD LR   +KLNP+KC FG
Sbjct: 910  FARLVYKVLCKQLGRNVEAYVDDIVVKSRKAFDHVSNLQETFDNLRAAGIKLNPEKCVFG 969

Query: 1258 VRSGKFLGYMVTEKGIEANPEKVRAIREMAPPRDAKDVQCLTGRLAALNRFISRLAERSL 1437
            VR+GK LG++V+EKGIEANP+K+ AI++M PP    +VQ L GR+ AL+RF+S+ AER L
Sbjct: 970  VRAGKLLGFLVSEKGIEANPKKIDAIQQMKPPSSVHEVQKLAGRIVALSRFLSKAAERGL 1029

Query: 1438 PFFKVLRKAKKFVWDEEC 1491
            PFFK LR + KF W  EC
Sbjct: 1030 PFFKTLRGSGKFNWTPEC 1047


>gb|ABB47013.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1475

 Score =  437 bits (1123), Expect = e-120
 Identities = 230/502 (45%), Positives = 317/502 (63%), Gaps = 5/502 (0%)
 Frame = +1

Query: 1    QRVFVDTGSSADILFYDCYKKMDLQV-GLETVDTALVGFAGGMIQPIGMITLPVSLGKEP 177
            +R+ VD GSSAD++F + Y KM L    L     +L GF    +Q +G   L ++ G   
Sbjct: 437  RRIQVDGGSSADVIFAEAYAKMGLPTQALTPAPASLRGFGREAVQVLGQALLLIAFGSGE 496

Query: 178  NRKTRMIRFLIVDAPSSYNVMLGRPALNAFQAVVSVYHLKMKFPVGEKVGEVDGDQYMAR 357
            +R+   + F +VD P +YN +LGR  LN F+A+    +L +K P    V  V G Q +A 
Sbjct: 497  SRREEQVLFDVVDIPYNYNAILGRATLNKFEAISHHNYLMLKMPGPVGVIVVKGLQPLA- 555

Query: 358  KLYVESIQKAERGSAFDDDRNKDKL-VRLDEPVEHVQ---PNDEMMMVELVPGDPDKVTK 525
                     A +G     +R    L   L   ++H     P+ +++ V++   DP K+  
Sbjct: 556  ---------ASKGDLAIINRAVHNLEAELHSRLKHAPKPTPHGKIVKVQIDDADPAKLIS 606

Query: 526  VGKELTDELRDELVEFLRNNVDVFAWTAEDLVGIDPSIAEHRLNVNPSYKPVKQKKRNFG 705
            +G  + ++  + ++  L+ N+D+FAW+ +++ G+   +  H L V P  KP KQK R   
Sbjct: 607  LGDGMGEQEAEGILAVLKKNIDIFAWSPDEVGGVLTDLIMHHLAVKPDAKPRKQKLRKMS 666

Query: 706  PKKDAIIRAEVQKLLKAGHIKEIQFPEWLSNAVLVPKTEDDWRMCVDFRDLNRACPKDYY 885
              +    +AEVQKLL+AG I+EI  PEWL+N VLV K+ D WRMCVDF DLN+ACPKD +
Sbjct: 667  ADRQEAAKAEVQKLLRAGVIQEIDHPEWLANPVLVRKSNDKWRMCVDFTDLNKACPKDDF 726

Query: 886  PLPRIDQLVDSTSGCELLSMMDASQGYHQIRLAEEDQKRVCFTTSFGTFCYVVMPFGLKN 1065
            PLPRIDQLVDST+GCEL+S +DA  GYHQI++   D  ++ F T FGTFC++ MPFGL+N
Sbjct: 727  PLPRIDQLVDSTAGCELMSFLDAYSGYHQIQMNPPDIPKIAFITPFGTFCHLRMPFGLRN 786

Query: 1066 AGATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVNHVHDLAETFDTLRKYRMKLNPKK 1245
            AGAT+ RLV K+   QLGRN+E YVDD++VKS KA +H  D  ETFD LR   +KLNP+K
Sbjct: 787  AGATFARLVYKVLCNQLGRNVEAYVDDIVVKSRKAFDHASDQQETFDNLRAAGIKLNPEK 846

Query: 1246 CAFGVRSGKFLGYMVTEKGIEANPEKVRAIREMAPPRDAKDVQCLTGRLAALNRFISRLA 1425
            C FGVR+GK LG++V+E+GIEANPEK+ A ++M P     +VQ L GR+AAL+R +S+ A
Sbjct: 847  CVFGVRAGKLLGFLVSERGIEANPEKIDASQQMKPQSSVHEVQKLAGRIAALSRLLSKAA 906

Query: 1426 ERSLPFFKVLRKAKKFVWDEEC 1491
            ER LPFFK LR   KF W  EC
Sbjct: 907  ERGLPFFKTLRGTGKFSWTPEC 928


>gb|AAL86511.1|AC099040_15 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1722

 Score =  435 bits (1119), Expect = e-119
 Identities = 230/502 (45%), Positives = 317/502 (63%), Gaps = 5/502 (0%)
 Frame = +1

Query: 1    QRVFVDTGSSADILFYDCYKKMDL-QVGLETVDTALVGFAGGMIQPIGMITLPVSLGKEP 177
            +R+ VD GSSAD++F + Y KM L    L     +L GF G  +Q +G   L ++ G   
Sbjct: 548  RRILVDGGSSADVIFAEAYAKMGLTSQALTPAPASLRGFGGEAVQVLGQALLLIAFGSGE 607

Query: 178  NRKTRMIRFLIVDAPSSYNVMLGRPALNAFQAVVSVYHLKMKFPVGEKVGEVDGDQYMAR 357
            NR+   + F +VD P +YN + GR  LN F+ +    +L++K P    V  V G Q  A 
Sbjct: 608  NRREEQVLFDVVDIPYNYNTIFGRATLNMFEVISHHNYLELKMPGPTGVIVVKGLQPSA- 666

Query: 358  KLYVESIQKAERGSAFDDDRNKDKL-VRLDEPVEHVQ---PNDEMMMVELVPGDPDKVTK 525
                     A +G     +R    + V+L +  +H     P+ +++ V++    P K+  
Sbjct: 667  ---------ASKGDLAIINRAVHNVEVKLHDRPKHAPKPTPHGKIIKVQIDDAVPTKLVS 717

Query: 526  VGKELTDELRDELVEFLRNNVDVFAWTAEDLVGIDPSIAEHRLNVNPSYKPVKQKKRNFG 705
            +G ++  E  + +++  + N+D+FAW+ +++ G+   +  H L V P  KP KQK R   
Sbjct: 718  LGGDMGKEEVESILKVPKKNIDIFAWSPDEVGGVSIVLIMHHLAVKPEAKPRKQKLRKMS 777

Query: 706  PKKDAIIRAEVQKLLKAGHIKEIQFPEWLSNAVLVPKTEDDWRMCVDFRDLNRACPKDYY 885
              +    +AEVQKLL+AG I+EI  PEWL+N VLV K+   WRMCVDF DLN+ACPKD +
Sbjct: 778  ADRQEAAKAEVQKLLRAGVIQEIDHPEWLANPVLVQKSNGKWRMCVDFTDLNKACPKDDF 837

Query: 886  PLPRIDQLVDSTSGCELLSMMDASQGYHQIRLAEEDQKRVCFTTSFGTFCYVVMPFGLKN 1065
            PLPRIDQLVDST+GCEL+S ++A  GYHQI +   D  +  F T F TFC++ MPFGL+N
Sbjct: 838  PLPRIDQLVDSTAGCELMSFLNAYSGYHQIHMNPLDIPKTSFITPFDTFCHLRMPFGLRN 897

Query: 1066 AGATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVNHVHDLAETFDTLRKYRMKLNPKK 1245
            AGAT+ RLV K+  +QLGRN+E YVDD++VK  KA +H  DL ETFD LR   +KLNP+K
Sbjct: 898  AGATFARLVYKVLCKQLGRNVEAYVDDIVVKIRKAFDHAIDLQETFDNLRAAGIKLNPEK 957

Query: 1246 CAFGVRSGKFLGYMVTEKGIEANPEKVRAIREMAPPRDAKDVQCLTGRLAALNRFISRLA 1425
            C FGVR+GK LG++V+E+GIEANPEK+ AI++M PP    +VQ L GR+ AL+RF+SR A
Sbjct: 958  CVFGVRAGKLLGFLVSERGIEANPEKIDAIQQMKPPSSVHEVQKLAGRIVALSRFLSRAA 1017

Query: 1426 ERSLPFFKVLRKAKKFVWDEEC 1491
            ER LPFFK LR A KF W  EC
Sbjct: 1018 ERGLPFFKTLRGAGKFNWTPEC 1039


>gb|AAP52706.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1735

 Score =  435 bits (1119), Expect = e-119
 Identities = 230/502 (45%), Positives = 317/502 (63%), Gaps = 5/502 (0%)
 Frame = +1

Query: 1    QRVFVDTGSSADILFYDCYKKMDL-QVGLETVDTALVGFAGGMIQPIGMITLPVSLGKEP 177
            +R+ VD GSSAD++F + Y KM L    L     +L GF G  +Q +G   L ++ G   
Sbjct: 561  RRILVDGGSSADVIFAEAYAKMGLTSQALTPAPASLRGFGGEAVQVLGQALLLIAFGSGE 620

Query: 178  NRKTRMIRFLIVDAPSSYNVMLGRPALNAFQAVVSVYHLKMKFPVGEKVGEVDGDQYMAR 357
            NR+   + F +VD P +YN + GR  LN F+ +    +L++K P    V  V G Q  A 
Sbjct: 621  NRREEQVLFDVVDIPYNYNTIFGRATLNMFEVISHHNYLELKMPGPTGVIVVKGLQPSA- 679

Query: 358  KLYVESIQKAERGSAFDDDRNKDKL-VRLDEPVEHVQ---PNDEMMMVELVPGDPDKVTK 525
                     A +G     +R    + V+L +  +H     P+ +++ V++    P K+  
Sbjct: 680  ---------ASKGDLAIINRAVHNVEVKLHDRPKHAPKPTPHGKIIKVQIDDAVPTKLVS 730

Query: 526  VGKELTDELRDELVEFLRNNVDVFAWTAEDLVGIDPSIAEHRLNVNPSYKPVKQKKRNFG 705
            +G ++  E  + +++  + N+D+FAW+ +++ G+   +  H L V P  KP KQK R   
Sbjct: 731  LGGDMGKEEVESILKVPKKNIDIFAWSPDEVGGVSIVLIMHHLAVKPEAKPRKQKLRKMS 790

Query: 706  PKKDAIIRAEVQKLLKAGHIKEIQFPEWLSNAVLVPKTEDDWRMCVDFRDLNRACPKDYY 885
              +    +AEVQKLL+AG I+EI  PEWL+N VLV K+   WRMCVDF DLN+ACPKD +
Sbjct: 791  ADRQEAAKAEVQKLLRAGVIQEIDHPEWLANPVLVQKSNGKWRMCVDFTDLNKACPKDDF 850

Query: 886  PLPRIDQLVDSTSGCELLSMMDASQGYHQIRLAEEDQKRVCFTTSFGTFCYVVMPFGLKN 1065
            PLPRIDQLVDST+GCEL+S ++A  GYHQI +   D  +  F T F TFC++ MPFGL+N
Sbjct: 851  PLPRIDQLVDSTAGCELMSFLNAYSGYHQIHMNPLDIPKTSFITPFDTFCHLRMPFGLRN 910

Query: 1066 AGATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVNHVHDLAETFDTLRKYRMKLNPKK 1245
            AGAT+ RLV K+  +QLGRN+E YVDD++VK  KA +H  DL ETFD LR   +KLNP+K
Sbjct: 911  AGATFARLVYKVLCKQLGRNVEAYVDDIVVKIRKAFDHAIDLQETFDNLRAAGIKLNPEK 970

Query: 1246 CAFGVRSGKFLGYMVTEKGIEANPEKVRAIREMAPPRDAKDVQCLTGRLAALNRFISRLA 1425
            C FGVR+GK LG++V+E+GIEANPEK+ AI++M PP    +VQ L GR+ AL+RF+SR A
Sbjct: 971  CVFGVRAGKLLGFLVSERGIEANPEKIDAIQQMKPPSSVHEVQKLAGRIVALSRFLSRAA 1030

Query: 1426 ERSLPFFKVLRKAKKFVWDEEC 1491
            ER LPFFK LR A KF W  EC
Sbjct: 1031 ERGLPFFKTLRGAGKFNWTPEC 1052


>gb|AAY99339.1| pol-polyprotein [Silene latifolia]
          Length = 1307

 Score =  431 bits (1107), Expect = e-118
 Identities = 230/511 (45%), Positives = 324/511 (63%), Gaps = 15/511 (2%)
 Frame = +1

Query: 1    QRVFVDTGSSADILFYDCYKKMDLQV-GLETVDTALVGFAGGMIQPIGMITLPVSLGKEP 177
            +R  +DTG+  +I+F +C+  + L++  L      L  F+G  + P+G I LPV  G+  
Sbjct: 77   KRCLIDTGAYTNIMFRECFLNLGLKIEDLSPCTNPLYSFSGAGLVPLGSIRLPVMFGQTD 136

Query: 178  NRKTRMIRFLIVDAPSSYNVMLGRPALNAFQAVVSVYHLKM----------KFPVGEKVG 327
              K  +  F+++D  S+YNV++GR  L+   AV+S+  L +          K    ++  
Sbjct: 137  AAKNVLSEFVVIDGSSAYNVLIGRVTLSEADAVMSIRALTLMYVSDQGEVQKLVSKDERD 196

Query: 328  EVDGDQYMARKLYVESIQKAERGSAFDDDRNKDKLVRLDEPVEHVQPNDEMMM----VEL 495
            EV   Q  AR   ++S++ A++         K K   L +  + +  N+  M+     E 
Sbjct: 197  EVVNVQISARGCNMQSLKVAKKSE-------KGKSPSLRQEGDPMSTNNVSMVEGAETEQ 249

Query: 496  VPGDPDKVTKVGKELTDELRDELVEFLRNNVDVFAWTAEDLVGIDPSIAEHRLNVNPSYK 675
            V  DP +   VG  L  + R +L++ LR N DVFA++A ++ G+   +  H+LNV  + +
Sbjct: 250  VEIDPGRTVTVGVGLEPKFRADLLDLLRKNKDVFAYSAAEMPGVSREVIVHKLNVLSNAR 309

Query: 676  PVKQKKRNFGPKKDAIIRAEVQKLLKAGHIKEIQFPEWLSNAVLVPKTEDDWRMCVDFRD 855
            PVKQK RN   +KD  I+AEV KLL+AG I    +PEWL+N V+V K+   WRMCVDF +
Sbjct: 310  PVKQKMRNSSAEKDDAIKAEVDKLLEAGFIMPCTYPEWLANVVMVKKSSGGWRMCVDFTN 369

Query: 856  LNRACPKDYYPLPRIDQLVDSTSGCELLSMMDASQGYHQIRLAEEDQKRVCFTTSFGTFC 1035
            LN+ACPKD YPLPRID L+D+T+   +LS++DA  GYHQ+ +AEED  +  F T  GT+ 
Sbjct: 370  LNKACPKDCYPLPRIDSLIDATASYTMLSLLDAFSGYHQVFMAEEDVLKCAFITIHGTYM 429

Query: 1036 YVVMPFGLKNAGATYQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVNHVHDLAETFDTLR 1215
            Y +M FGLKNAGATY RLVDK+F +Q GRN+E YVDD +VKS     H+ DL+ETF +LR
Sbjct: 430  YKMMSFGLKNAGATYTRLVDKVFQDQKGRNIEAYVDDAIVKSKSDSEHLADLSETFCSLR 489

Query: 1216 KYRMKLNPKKCAFGVRSGKFLGYMVTEKGIEANPEKVRAIREMAPPRDAKDVQCLTGRLA 1395
            KY+MKLNP KC FGVR+GKFLG +V+ +GI+ANPEKV+AI ++  PR+ K+V  LTGR+A
Sbjct: 490  KYKMKLNPMKCNFGVRAGKFLGVLVSARGIDANPEKVQAILDLLEPRNRKEVMMLTGRMA 549

Query: 1396 ALNRFISRLAERSLPFFKVLRKAKKFVWDEE 1488
            AL RFISR  ++S PFFKVL+  K F W EE
Sbjct: 550  ALARFISRSTDKSTPFFKVLKGNKDFSWGEE 580


>dbj|BAK61840.1| gag-pol polyprotein [Citrus unshiu]
          Length = 1542

 Score =  430 bits (1105), Expect = e-118
 Identities = 229/498 (45%), Positives = 322/498 (64%), Gaps = 1/498 (0%)
 Frame = +1

Query: 1    QRVFVDTGSSADILFYDCYKKMDLQ-VGLETVDTALVGFAGGMIQPIGMITLPVSLGKEP 177
            +R+ VDTGSS DILF      M +  + LE  +T+L GF GG + P+G+  LP+++G +P
Sbjct: 564  RRILVDTGSSVDILFKSALDDMGISDLKLERTNTSLKGFGGGRLTPMGINELPITVGSKP 623

Query: 178  NRKTRMIRFLIVDAPSSYNVMLGRPALNAFQAVVSVYHLKMKFPVGEKVGEVDGDQYMAR 357
              +  M+ F++V+  S Y ++LGRP +   Q V+S ++L +K+ V   VG V G Q M R
Sbjct: 624  FERIVMLYFVVVEERSPYQMILGRPFIRISQCVISTHYLALKYRVNGVVGVVKGVQKMTR 683

Query: 358  KLYVESIQKAERGSAFDDDRNKDKLVRLDEPVEHVQPNDEMMMVELVPGDPDKVTKVGKE 537
              Y  + ++  + ++ D+ R   K  R  EPVE +   DE+ + +    +P ++ K+G  
Sbjct: 684  SCYATAAKETLQVTSLDN-RGDSKKGR-QEPVEKL---DEVFVNK---SNPSRMVKIGSG 735

Query: 538  LTDELRDELVEFLRNNVDVFAWTAEDLVGIDPSIAEHRLNVNPSYKPVKQKKRNFGPKKD 717
            L + ++ ELV++L++  D+FAW+ ED+  ID  IA H+L +     PV+QK+R F  ++ 
Sbjct: 736  LGETIKGELVKYLQSYADIFAWSHEDMPRIDHGIAYHKLAIRKGAMPVRQKRRCFNQERY 795

Query: 718  AIIRAEVQKLLKAGHIKEIQFPEWLSNAVLVPKTEDDWRMCVDFRDLNRACPKDYYPLPR 897
              I AEV++LLKAG I++ ++ EW+SN +LV K     RMCVDF DLN+ACPKD +PL +
Sbjct: 796  EAINAEVEQLLKAGFIRKTKYSEWISNVILVKKAS---RMCVDFTDLNKACPKDSFPLQK 852

Query: 898  IDQLVDSTSGCELLSMMDASQGYHQIRLAEEDQKRVCFTTSFGTFCYVVMPFGLKNAGAT 1077
            IDQLVDST+G  LLS MD   GY+QI + E+D++   F T+ G FCY VMPFGLKN GAT
Sbjct: 853  IDQLVDSTAGHSLLSFMDTFSGYNQIPMDEQDEESTTFITNIGLFCYRVMPFGLKNTGAT 912

Query: 1078 YQRLVDKMFGEQLGRNMEVYVDDMLVKSIKAVNHVHDLAETFDTLRKYRMKLNPKKCAFG 1257
            YQRLV+K+F   +G  MEVYVDDM+ KS K  +HV  L ETF+ LRKY MKLNP+KCAFG
Sbjct: 913  YQRLVNKIFKPLIGHTMEVYVDDMITKSKKPKDHVKHLEETFELLRKYEMKLNPEKCAFG 972

Query: 1258 VRSGKFLGYMVTEKGIEANPEKVRAIREMAPPRDAKDVQCLTGRLAALNRFISRLAERSL 1437
            V SGKFLG++V+ + I+ NP K+RA+ E+   R  K+VQ  TG+LAALNRFISR      
Sbjct: 973  VSSGKFLGFLVSHRRIKVNPAKIRAVTEIKSLRTVKEVQSFTGKLAALNRFISR------ 1026

Query: 1438 PFFKVLRKAKKFVWDEEC 1491
                     +K  W  EC
Sbjct: 1027 ---------RKMEWTSEC 1035


>gb|AAU44275.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 2027

 Score =  430 bits (1105), Expect = e-118
 Identities = 224/495 (45%), Positives = 304/495 (61%)
 Frame = +1

Query: 4    RVFVDTGSSADILFYDCYKKMDLQVGLETVDTALVGFAGGMIQPIGMITLPVSLGKEPNR 183
            RV +D G++ ++L    +  +     +      ++G   G   P+G I LPV+ G   N 
Sbjct: 626  RVLIDGGAALNVLSPAAFDAIKAPGMMLRPSQPIIGVTPGHTWPLGHIDLPVTFGGPANF 685

Query: 184  KTRMIRFLIVDAPSSYNVMLGRPALNAFQAVVSVYHLKMKFPVGEKVGEVDGDQYMARKL 363
            +T  + F + D    YN +LGRPAL  F A V   +L+MK P  +    V GD  +A   
Sbjct: 686  RTERVNFDVADLSLPYNAVLGRPALVKFMAAVHYAYLQMKMPCPDSPISVHGDLRVALAC 745

Query: 364  YVESIQKAERGSAFDDDRNKDKLVRLDEPVEHVQPNDEMMMVELVPGDPDKVTKVGKELT 543
                            ++ KD+L  + +P    +  DE +     P  P +      E+ 
Sbjct: 746  M---------------EQRKDRLAVVSKP----EGGDERLGTS-APAAPRQRIATSDEVP 785

Query: 544  DELRDELVEFLRNNVDVFAWTAEDLVGIDPSIAEHRLNVNPSYKPVKQKKRNFGPKKDAI 723
            +   D LV FLR N DVFAW   D+ G+   + EHRL V PS +PV+QK R   P++ A 
Sbjct: 786  E---DALVSFLRANADVFAWRPADMPGVPREVIEHRLAVRPSARPVRQKVRRQAPERQAF 842

Query: 724  IRAEVQKLLKAGHIKEIQFPEWLSNAVLVPKTEDDWRMCVDFRDLNRACPKDYYPLPRID 903
            IR EV +LL+AG I+E+  PEWL+N V+VPK     RMC+D+ DLN+ACPKD YPLPRID
Sbjct: 843  IREEVARLLEAGFIREVIHPEWLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRID 902

Query: 904  QLVDSTSGCELLSMMDASQGYHQIRLAEEDQKRVCFTTSFGTFCYVVMPFGLKNAGATYQ 1083
            Q+VDST+GC+LL  +DA  GYHQIR+A ED+++  F T  GT+CY  MPFGLKNAG T+Q
Sbjct: 903  QIVDSTAGCDLLCFLDAYSGYHQIRMAREDEEKTAFITPVGTYCYTSMPFGLKNAGPTFQ 962

Query: 1084 RLVDKMFGEQLGRNMEVYVDDMLVKSIKAVNHVHDLAETFDTLRKYRMKLNPKKCAFGVR 1263
            R      G Q+GRN+E YVDD++VK+      + DLAETF+ LR  R+KLNP KC FGV 
Sbjct: 963  RTTRISLGSQIGRNVEAYVDDLVVKTRNQETLLSDLAETFENLRSARIKLNPDKCVFGVP 1022

Query: 1264 SGKFLGYMVTEKGIEANPEKVRAIREMAPPRDAKDVQCLTGRLAALNRFISRLAERSLPF 1443
            +GK LG++V+ +GIEANPEK+RAI  M PP   +DVQC+TG +AAL+RFISRL E++LP 
Sbjct: 1023 AGKLLGFLVSARGIEANPEKIRAIERMRPPSKLRDVQCVTGCMAALSRFISRLGEKALPL 1082

Query: 1444 FKVLRKAKKFVWDEE 1488
            FK+L+++  F W EE
Sbjct: 1083 FKLLKRSGPFTWTEE 1097