BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00017882
         (1265 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme...   443   e-122
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme...   416   e-114
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu...   411   e-112
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu...   411   e-112
emb|CBI28010.3| unnamed protein product [Vitis vinifera]              408   e-111
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   408   e-111
gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus no...   397   e-108
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu...   386   e-105
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme...   377   e-102
gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus pe...   377   e-102
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A...   371   e-100
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ...   369   2e-99
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid...   366   1e-98
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme...   363   8e-98
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr...   358   2e-96
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr...   358   2e-96
gb|AAC62123.1| hypothetical protein [Arabidopsis thaliana]            356   1e-95
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr...   355   2e-95
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid...   352   2e-94
gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]            352   2e-94

>ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            lycopersicum]
          Length = 1011

 Score =  443 bits (1139), Expect = e-122
 Identities = 218/394 (55%), Positives = 286/394 (72%), Gaps = 1/394 (0%)
 Frame = +3

Query: 3    KTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILDIGPISGKVLVYRNPGMHFGDVHI 182
            +TKL+ GK+PIS+SFYLMGTADPTGVL ++EVC+ILD G +SG+VLVYRNPG+HFGDVH+
Sbjct: 619  RTKLRGGKLPISDSFYLMGTADPTGVLESNEVCVILDNGQVSGRVLVYRNPGLHFGDVHV 678

Query: 183  MKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDMYWISRNSELLKYFKANE 362
            MKA YV+E+ +VVG+AKYGIFFSTKG RSAA E+A GDFDGDMYW+S N +L+  +  + 
Sbjct: 679  MKARYVEELADVVGDAKYGIFFSTKGPRSAATEIANGDFDGDMYWVSINRKLVDSYTTSR 738

Query: 363  PWNRVYSIPDSKKRNPQEFSDVXXXXXXXXXXXXXXXPSFDMATAAESWLTFMDRLLTLG 542
            PW R++S P++  + P EFS                    +M+ AA+SWL FMDRLLTL 
Sbjct: 739  PWIRMHSTPNAVSKKPSEFSADELEYELFRQFLEAKSKGANMSLAADSWLAFMDRLLTLR 798

Query: 543  DDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSS 722
            DD   + + LKGK++ LIDIYYDALDAPKSGKKV +P  LKA  +PHYME+    SYHS+
Sbjct: 799  DDNVDDMHSLKGKMLHLIDIYYDALDAPKSGKKVSIPHYLKANKFPHYMEKGNSCSYHST 858

Query: 723  SILGQIYDRVIAYKNEAVLQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGD 902
            SILGQIYD V +Y +E +   E+ KL CF++ IP+  + +W+ RYE Y+K+M  A+    
Sbjct: 859  SILGQIYDHVDSYPDEDLCITEISKLPCFEVEIPQRCMTLWRGRYEEYKKDMTRAMNFDC 918

Query: 903  ESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMI-HGVEKCSF 1079
            E +  + NEVIKKYK L+Y A + E++ + T+ I++EA+AIYHV Y+ A I + +EKC F
Sbjct: 919  ELRITSCNEVIKKYKMLLYGAVEFEQTVRKTEDIFDEALAIYHVTYDNARITYSIEKCGF 978

Query: 1080 AWRVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 1181
            AW+VAGSALC + A      KEK L ILPSVL++
Sbjct: 979  AWKVAGSALCRIHAMY---RKEKDLPILPSVLQE 1009


>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            tuberosum]
          Length = 1110

 Score =  416 bits (1070), Expect = e-114
 Identities = 208/393 (52%), Positives = 277/393 (70%), Gaps = 5/393 (1%)
 Frame = +3

Query: 12   LKEGKIPISESFYLMGTADPTGVLNNDEVCIILDIGPISGKVLVYRNPGMHFGDVHIMKA 191
            LK G++PI+++FYLMGTADPT  LN  EVC+IL+ G I G+VLVYRNPG+HFGD+H + A
Sbjct: 707  LKGGRLPIADTFYLMGTADPTDTLNPHEVCVILEHGQIFGEVLVYRNPGLHFGDIHRLLA 766

Query: 192  VYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDMYWISRNSELLKYFKANEPWN 371
            V VK + ++VGNAKYGIFFSTKG RSAA E+A GDFDGD YW+S+N +LLKYF A+ PW+
Sbjct: 767  VPVKNLGDIVGNAKYGIFFSTKGPRSAATEIANGDFDGDKYWVSQNPQLLKYFTASRPWS 826

Query: 372  RVYSIPDSKKRNPQEFSDVXXXXXXXXXXXXXXXPSFDMATAAESWLTFMDRLLTLGDDR 551
            R++S P +  R P  FS                 P++ MA A+ +W   MDRLL LG + 
Sbjct: 827  RIHSTPKTLHREPNNFSAEEREHDLFQTFLETRMPNYSMADASANWYALMDRLLILGKNN 886

Query: 552  ATEKNYLKG---KIIQLIDIYYDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSS 722
             TE   +K    K+ +LID+YYDA+DAPKSG KV +P+ LK + +PH++++    SYHS+
Sbjct: 887  TTENEEIKSVKEKLFELIDLYYDAIDAPKSGNKVYIPKRLKVDKFPHFLQK--KESYHST 944

Query: 723  SILGQIYDRVIAYKNEAVLQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGD 902
            S+LG+IYDRV  +K E     E+ KLS F++ IP+  + +W+ RY +YR EMKEAL +  
Sbjct: 945  SVLGEIYDRVEKFKAEEPAAVEIKKLSAFEVGIPDTCLRLWEERYRNYRFEMKEALNTSS 1004

Query: 903  ESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG-VEKCSF 1079
            ESKND A++VIKKYKQL+YEAPDMEES ++T  +Y +A+AIY V Y+YA   G V KC F
Sbjct: 1005 ESKNDLADQVIKKYKQLLYEAPDMEESIRSTTDMYNDALAIYCVTYDYAKAIGDVRKCGF 1064

Query: 1080 AWRVAGSALCNLCAWRIAGP-KEKPLTILPSVL 1175
            AW+VAG+ALC L A   A    +K + + PS+L
Sbjct: 1065 AWKVAGAALCKLHAELHAKEHNQKVMAMSPSIL 1097


>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334280|gb|ERP58267.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 877

 Score =  411 bits (1056), Expect = e-112
 Identities = 213/395 (53%), Positives = 273/395 (69%), Gaps = 3/395 (0%)
 Frame = +3

Query: 3    KTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILDIGPISGKVLVYRNPGMHFGDVHI 182
            K  LK GKIP+ ES+YLMGTADPTG+L +DEVCIILD G ISG+VL+YRNPG+HFGD+HI
Sbjct: 483  KKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGEVLIYRNPGLHFGDIHI 542

Query: 183  MKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDMYWISRNSELLKYFKANE 362
            +KA YV+E+E+ VGNAKY IFF  KG RS A EM+ GDFDGDM+++SRN +LL+ FK  E
Sbjct: 543  LKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPQLLETFKQTE 602

Query: 363  PWNRVYSIPDSKKRNPQEFSD-VXXXXXXXXXXXXXXXPSFDMATAAESWLTFMDRLLTL 539
            PW    S P+   R P EFSD                 PS  +  AA+SWL  MDRLLTL
Sbjct: 603  PWTPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSSTVGVAADSWLAMMDRLLTL 662

Query: 540  GDDRATEKNYLKGKIIQLIDIYYDALDAP-KSGKKVKVPQELKAEMYPHYMERWPDLSYH 716
            G+D A E   +K  I  LIDIYYDALDAP K G++++VP+ LKAE++PH+M +    +Y 
Sbjct: 663  GNDCAEEIVCMKENINLLIDIYYDALDAPKKGGRRIEVPEGLKAELFPHFMGKNEKKTYR 722

Query: 717  SSSILGQIYDRVIAYKNEAVLQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALES 896
            S+SILG+IYD+V AY++  +   +VWKL CFD  + E Y+  WK  Y  YRKEM+ AL++
Sbjct: 723  STSILGKIYDKVKAYEDMDLSSNDVWKLPCFDDEVHELYLVKWKELYGQYRKEMRNALKA 782

Query: 897  GDESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG-VEKC 1073
            G+ES ND ANEVI+KYK+ +YEA +   S +  + I+EEA+A+Y V Y +A   G V  C
Sbjct: 783  GEES-NDKANEVIRKYKEFLYEAAEFNLSKRRDEEIFEEAMALYQVSYNHAKSQGVVGNC 841

Query: 1074 SFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLR 1178
            SFAWRVAG ALC L   +  G  E+P+   PS L+
Sbjct: 842  SFAWRVAGLALCTLYVLKNQG--ERPMICSPSALK 874


>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334279|gb|ERP58266.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 899

 Score =  411 bits (1056), Expect = e-112
 Identities = 213/395 (53%), Positives = 273/395 (69%), Gaps = 3/395 (0%)
 Frame = +3

Query: 3    KTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILDIGPISGKVLVYRNPGMHFGDVHI 182
            K  LK GKIP+ ES+YLMGTADPTG+L +DEVCIILD G ISG+VL+YRNPG+HFGD+HI
Sbjct: 505  KKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGEVLIYRNPGLHFGDIHI 564

Query: 183  MKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDMYWISRNSELLKYFKANE 362
            +KA YV+E+E+ VGNAKY IFF  KG RS A EM+ GDFDGDM+++SRN +LL+ FK  E
Sbjct: 565  LKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPQLLETFKQTE 624

Query: 363  PWNRVYSIPDSKKRNPQEFSD-VXXXXXXXXXXXXXXXPSFDMATAAESWLTFMDRLLTL 539
            PW    S P+   R P EFSD                 PS  +  AA+SWL  MDRLLTL
Sbjct: 625  PWTPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSSTVGVAADSWLAMMDRLLTL 684

Query: 540  GDDRATEKNYLKGKIIQLIDIYYDALDAP-KSGKKVKVPQELKAEMYPHYMERWPDLSYH 716
            G+D A E   +K  I  LIDIYYDALDAP K G++++VP+ LKAE++PH+M +    +Y 
Sbjct: 685  GNDCAEEIVCMKENINLLIDIYYDALDAPKKGGRRIEVPEGLKAELFPHFMGKNEKKTYR 744

Query: 717  SSSILGQIYDRVIAYKNEAVLQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALES 896
            S+SILG+IYD+V AY++  +   +VWKL CFD  + E Y+  WK  Y  YRKEM+ AL++
Sbjct: 745  STSILGKIYDKVKAYEDMDLSSNDVWKLPCFDDEVHELYLVKWKELYGQYRKEMRNALKA 804

Query: 897  GDESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG-VEKC 1073
            G+ES ND ANEVI+KYK+ +YEA +   S +  + I+EEA+A+Y V Y +A   G V  C
Sbjct: 805  GEES-NDKANEVIRKYKEFLYEAAEFNLSKRRDEEIFEEAMALYQVSYNHAKSQGVVGNC 863

Query: 1074 SFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLR 1178
            SFAWRVAG ALC L   +  G  E+P+   PS L+
Sbjct: 864  SFAWRVAGLALCTLYVLKNQG--ERPMICSPSALK 896


>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  408 bits (1048), Expect = e-111
 Identities = 209/393 (53%), Positives = 275/393 (69%), Gaps = 4/393 (1%)
 Frame = +3

Query: 12   LKEGKIPISESFYLMGTADPTGVLNNDEVCIILDIGPISGKVLVYRNPGMHFGDVHIMKA 191
            L+ GK+P+++ FYLMGTADPTG L +DEVCIILD G + G+VLVY++PG+HFGD+H++ A
Sbjct: 539  LRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQGRVLVYKHPGLHFGDIHVLNA 598

Query: 192  VYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDMYWISRNSELLKYFKANEPWN 371
             YV+ +EE VGNAKY IFF  KG RS A EMA  DFDGDMYW+SRN +LL+YF+A+EPW 
Sbjct: 599  TYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDMYWVSRNQQLLQYFRASEPWM 658

Query: 372  RVYSIPDSKKRNPQEFS-DVXXXXXXXXXXXXXXXPSFDMATAAESWLTFMDRLLTLGDD 548
            R  S      + P +FS D                 S  +  AA++WL FMDRLLTL DD
Sbjct: 659  RKRSTRHVPSKRPTDFSPDELEHELFQLFLTTRFQTSSAIGMAADNWLVFMDRLLTLRDD 718

Query: 549  RATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSSI 728
             + EK  LK K+++L DIYYDALDAPKSG KV V +ELKAE +PH+M R  + SYHS+SI
Sbjct: 719  CSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSKELKAEKFPHFMGR--ESSYHSTSI 776

Query: 729  LGQIYDRVIAYKNEAVLQREVWKLSCFDI-PIPEAYVNMWKARYESYRKEMKEALESGDE 905
            LGQIYD V +++ E    +E+W+L  F+I  +P+A +  WK RY+ YR EM  AL+ G E
Sbjct: 777  LGQIYDAVESFQPENQSTKEIWRLPLFNIDAVPQACLRSWKDRYDQYRSEMAAALQHGGE 836

Query: 906  SKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG--VEKCSF 1079
            +K++ A EVI KYKQ++Y A + EES +N + I++EA+AIYHV YE+ +I+G  V  C+F
Sbjct: 837  TKDEYAAEVINKYKQILYGAAEFEESPRNLEDIFDEALAIYHVTYEF-VINGARVSYCNF 895

Query: 1080 AWRVAGSALCNLCAWRIAGPKEKPLTILPSVLR 1178
             WRVAG ALC L   ++    EK +  +PSVLR
Sbjct: 896  PWRVAGRALCKLYTVKLG---EKSMVCVPSVLR 925


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
            vinifera]
          Length = 943

 Score =  408 bits (1048), Expect = e-111
 Identities = 209/393 (53%), Positives = 275/393 (69%), Gaps = 4/393 (1%)
 Frame = +3

Query: 12   LKEGKIPISESFYLMGTADPTGVLNNDEVCIILDIGPISGKVLVYRNPGMHFGDVHIMKA 191
            L+ GK+P+++ FYLMGTADPTG L +DEVCIILD G + G+VLVY++PG+HFGD+H++ A
Sbjct: 553  LRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQGRVLVYKHPGLHFGDIHVLNA 612

Query: 192  VYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDMYWISRNSELLKYFKANEPWN 371
             YV+ +EE VGNAKY IFF  KG RS A EMA  DFDGDMYW+SRN +LL+YF+A+EPW 
Sbjct: 613  TYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDMYWVSRNQQLLQYFRASEPWM 672

Query: 372  RVYSIPDSKKRNPQEFS-DVXXXXXXXXXXXXXXXPSFDMATAAESWLTFMDRLLTLGDD 548
            R  S      + P +FS D                 S  +  AA++WL FMDRLLTL DD
Sbjct: 673  RKRSTRHVPSKRPTDFSPDELEHELFQLFLTTRFQTSSAIGMAADNWLVFMDRLLTLRDD 732

Query: 549  RATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSSI 728
             + EK  LK K+++L DIYYDALDAPKSG KV V +ELKAE +PH+M R  + SYHS+SI
Sbjct: 733  CSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSKELKAEKFPHFMGR--ESSYHSTSI 790

Query: 729  LGQIYDRVIAYKNEAVLQREVWKLSCFDI-PIPEAYVNMWKARYESYRKEMKEALESGDE 905
            LGQIYD V +++ E    +E+W+L  F+I  +P+A +  WK RY+ YR EM  AL+ G E
Sbjct: 791  LGQIYDAVESFQPENQSTKEIWRLPLFNIDAVPQACLRSWKDRYDQYRSEMAAALQHGGE 850

Query: 906  SKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG--VEKCSF 1079
            +K++ A EVI KYKQ++Y A + EES +N + I++EA+AIYHV YE+ +I+G  V  C+F
Sbjct: 851  TKDEYAAEVINKYKQILYGAAEFEESPRNLEDIFDEALAIYHVTYEF-VINGARVSYCNF 909

Query: 1080 AWRVAGSALCNLCAWRIAGPKEKPLTILPSVLR 1178
             WRVAG ALC L   ++    EK +  +PSVLR
Sbjct: 910  PWRVAGRALCKLYTVKLG---EKSMVCVPSVLR 939


>gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus notabilis]
          Length = 521

 Score =  397 bits (1019), Expect = e-108
 Identities = 208/414 (50%), Positives = 271/414 (65%), Gaps = 21/414 (5%)
 Frame = +3

Query: 3    KTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILDIGPISGKVLVYRNPGMHFGDVHI 182
            +  L+ G++ + + FYLMGTADPTG L +DEVCI+L  G +SGKVLVYRNPG+HFGD+H+
Sbjct: 110  RKSLRGGRLHVDDCFYLMGTADPTGKLEHDEVCIVLANGQVSGKVLVYRNPGLHFGDIHV 169

Query: 183  MKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDMYWISRNSELLKYFKANE 362
            +KA Y++E+E  VGNAKY IFFS KG RS A EMA GDFDGDM+W+SRN ELLKYFK ++
Sbjct: 170  LKATYIEEMESFVGNAKYAIFFSKKGPRSIADEMAGGDFDGDMFWVSRNPELLKYFKPSD 229

Query: 363  PWNRVYSIPDSKKRNPQEFSD-VXXXXXXXXXXXXXXXPSFDMATAAESWLTFMDRLLTL 539
            PW +  S    K + P + SD                 PSF  + A+E WL  MDR LTL
Sbjct: 230  PWIKKSSTGKVKSKQPIDLSDRELEDELIKLFLTVRFKPSFAKSEASEGWLALMDRFLTL 289

Query: 540  GDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKK-------------------VKVPQEL 662
            GDD   EKN +K  + +L+DIYYDALDAPK G K                   V+VP+EL
Sbjct: 290  GDDCVAEKNAVKDNLFELVDIYYDALDAPKQGGKQQDLAKFFEAYAALELSFQVEVPREL 349

Query: 663  KAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAVLQREVWKLSCFDIPIPEAYVNM 842
            K   +PHYME+    S+HS SILG IYD V AY+ E    +E++KL  F++ +PEA +  
Sbjct: 350  KPNRFPHYMEK--QNSFHSRSILGWIYDEVDAYQLEDHSNKEIFKLPHFEVEVPEACLTK 407

Query: 843  WKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVA 1022
            WKA Y+ YR +M +AL + D  K +AA EV +KYK+L+Y A ++EES+K  + IY EA+A
Sbjct: 408  WKAHYKDYRDDMCDALLAKDVGKTEAAEEVKRKYKRLLYGAEELEESTKKMEEIYNEALA 467

Query: 1023 IYHVIYEYAMI-HGVEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 1181
            IYHV Y+YA+    V  CSFAW +AGSAL  L A++  G  E+    LPSVL++
Sbjct: 468  IYHVCYDYAISQRKVSYCSFAWNIAGSALLKLHAFKKIG--ERAFFCLPSVLKE 519


>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
            gi|550336519|gb|ERP59562.1| hypothetical protein
            POPTR_0006s17780g [Populus trichocarpa]
          Length = 866

 Score =  386 bits (992), Expect = e-105
 Identities = 206/395 (52%), Positives = 264/395 (66%), Gaps = 3/395 (0%)
 Frame = +3

Query: 3    KTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILDIGPISGKVLVYRNPGMHFGDVHI 182
            K  LK GKIP+ ES+YLMGTADPTG+L +DEVCIILD G +SG+VLVYRNPG+HFGD+HI
Sbjct: 483  KKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQVSGEVLVYRNPGLHFGDIHI 542

Query: 183  MKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDMYWISRNSELLKYFKANE 362
            +KA YV+E+E+ VGNAKY IFF  KG RS A EM+ GDFDGDM+++SRN  LL+ FK  E
Sbjct: 543  LKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPRLLENFKQTE 602

Query: 363  PWNRVYSIPDSKKRNPQEFSD-VXXXXXXXXXXXXXXXPSFDMATAAESWLTFMDRLLTL 539
            PW    S P+   R P EFSD                 PSF +  AA+SWL  MDRLLTL
Sbjct: 603  PWTPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSFTVGVAADSWLAMMDRLLTL 662

Query: 540  GDDRATEKNYLKGKIIQLIDIYYDALDAP-KSGKKVKVPQELKAEMYPHYMERWPDLSYH 716
            G+D   E   +K  I  LIDIYYDALDAP K G+K++VP+ LKAE++PH+ME+    +Y 
Sbjct: 663  GNDCTEEIACVKKNINLLIDIYYDALDAPKKGGRKIEVPEALKAELFPHFMEKHEKKTYR 722

Query: 717  SSSILGQIYDRVIAYKNEAVLQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALES 896
            S+SILG+IYD+V AY++  +              + E+ +  WK  Y  YR EM+ AL++
Sbjct: 723  STSILGKIYDKVKAYEDMDLSSN-----------VHESCLVKWKGLYGQYRTEMRNALQA 771

Query: 897  GDESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG-VEKC 1073
            G E KN+ ANEVIKKYK+++YEA +   S +  + I+EEA A+Y V Y +A   G V KC
Sbjct: 772  GKE-KNNEANEVIKKYKEILYEAAEFNLSRRRDEEIFEEARALYQVTYNHAKRQGAVGKC 830

Query: 1074 SFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLR 1178
             FAWRVAG ALC L  + +   +E+PL   PS L+
Sbjct: 831  GFAWRVAGLALCTL--YVLKNQEERPLICSPSALK 863


>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
            sativus]
          Length = 1056

 Score =  377 bits (968), Expect = e-102
 Identities = 197/395 (49%), Positives = 265/395 (67%), Gaps = 2/395 (0%)
 Frame = +3

Query: 3    KTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILDIGPISGKVLVYRNPGMHFGDVHI 182
            K  LK G++ + E +YLMGT DPT  L + EVC+IL  G I+GKVLVYRNPG+HFGD+H+
Sbjct: 664  KKSLKSGRLHVPECYYLMGTVDPTFTLESGEVCVILYNGQINGKVLVYRNPGLHFGDIHV 723

Query: 183  MKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDMYWISRNSELLKYFKANE 362
            + A YV+++  VVGNAKY IFFS+KG RS A E+A GDFDGDMYW+SRNS+LL+YF+  E
Sbjct: 724  LTAKYVEKLVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYFRPCE 783

Query: 363  PWNRVYSIPDSKKRNPQEFS-DVXXXXXXXXXXXXXXXPSFDMATAAESWLTFMDRLLTL 539
            PW    S      + P+EFS D                PS+  + AA++WL  MD+ L L
Sbjct: 784  PWRPSPSTEVVTNKKPKEFSADELENELFKLFLSTRFQPSYAKSVAADNWLALMDQFLML 843

Query: 540  GDDRATEKNYLKGKIIQLIDIYYDALDAP-KSGKKVKVPQELKAEMYPHYMERWPDLSYH 716
            G++R  E+N ++ KI+QLI+IYYDALDAP K GKK++VP+ LKA   PH+MER  + SY 
Sbjct: 844  GEERKEERNCIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHFMERGKN-SYV 902

Query: 717  SSSILGQIYDRVIAYKNEAVLQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALES 896
            S+SILGQI+D    Y+ E V   EV KL CF+  +PE     WK  YE YRK+M +A++ 
Sbjct: 903  STSILGQIFDTANMYQEE-VPNIEVQKLPCFEEELPEYIFMKWKFLYELYRKDMVDAMQL 961

Query: 897  GDESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHGVEKCS 1076
              ++KN AA   IKKYK+++Y A ++E S ++ + +Y+EA+AIY V Y++AM   V  C 
Sbjct: 962  DPDAKNIAAEATIKKYKEILYGAEELEGSPRSNEEVYQEALAIYQVTYDHAMSRSVRNCG 1021

Query: 1077 FAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 1181
            FAW+VAGSAL  L A +     E+    LPSV+R+
Sbjct: 1022 FAWKVAGSALFKLYAIK---HSERSFHCLPSVMRE 1053


>gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus persica]
          Length = 798

 Score =  377 bits (967), Expect = e-102
 Identities = 195/371 (52%), Positives = 258/371 (69%), Gaps = 5/371 (1%)
 Frame = +3

Query: 12   LKEGKIPISESFYLMGTADPTGVLNNDEVCIILDIGPISGKVLVYRNPGMHFGDVHIMKA 191
            L++GKI   +S+ LMGTADPTG+L  DEVCIILD G +SG+VLVYR+PG+HFGD+H++KA
Sbjct: 407  LQKGKICSPQSYMLMGTADPTGILERDEVCIILDSGQMSGQVLVYRHPGLHFGDIHLLKA 466

Query: 192  VYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDMYWISRNSELLKYFKANEPW- 368
             YVKE+E VVGNAKY IFFS KG RS A EM  GDFDGD+YW+SRN +LL+ FK +EPW 
Sbjct: 467  RYVKELEYVVGNAKYAIFFSCKGPRSVADEMGGGDFDGDLYWVSRNPQLLECFKPSEPWI 526

Query: 369  NRVYSIPDSKKRNPQE-FSDVXXXXXXXXXXXXXXXPSFDMATAAESWLTFMDRLLTLGD 545
                S P      P E   +                PSF M+ A++SWL  MDRLL LGD
Sbjct: 527  EASSSTPKVASTRPSELLPNHIEDALIKLFLKTRFEPSFAMSEASDSWLAMMDRLLILGD 586

Query: 546  DRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSS 725
               +EK ++K  +++L+D+YY+ALDAPK G KV VP ELK+ ++PHYMER    SY S+S
Sbjct: 587  SSNSEKTHVKANMLRLVDLYYEALDAPKKGGKVVVPGELKSNLFPHYMERVN--SYKSTS 644

Query: 726  ILGQIYDRVIAYKNEAVLQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGD- 902
            ILG IYD V AY+ E    +EV KL  FD+ +PE  +  W+  Y+ YR EM  A++  D 
Sbjct: 645  ILGLIYDTVNAYQAEDASIKEVKKLPMFDVEVPEECLKKWREHYQHYRSEMSSAMQDDDR 704

Query: 903  ESKNDAANEVIKKYKQLIY-EAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG-VEKCS 1076
            +SKN+AA++V++KYK+++Y  A D+E S++    I++EA+AIY V Y++A+  G V KC 
Sbjct: 705  DSKNNAADKVLRKYKEILYGGAEDLENSTRPLHEIFDEALAIYRVTYDHAISQGAVGKCC 764

Query: 1077 FAWRVAGSALC 1109
            FAW+VAGSALC
Sbjct: 765  FAWKVAGSALC 775


>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
            gi|548857326|gb|ERN15132.1| hypothetical protein
            AMTR_s00056p00110240 [Amborella trichopoda]
          Length = 988

 Score =  371 bits (952), Expect = e-100
 Identities = 198/392 (50%), Positives = 261/392 (66%), Gaps = 2/392 (0%)
 Frame = +3

Query: 12   LKEGKIPISESFYLMGTADPTGVLNNDEVCIILDIGPISGKVLVYRNPGMHFGDVHIMKA 191
            LKEGK+ +  S+YLMGTADPTG L  +EVCIILD G ISGKVLVYR+PG+HFGD+H+  A
Sbjct: 601  LKEGKVLLPNSYYLMGTADPTGKLKGNEVCIILDHGQISGKVLVYRHPGLHFGDIHVFTA 660

Query: 192  VYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDMYWISRNSELLKYFKANEPWN 371
             Y++++ E+VGNAK+ IFFST+G RSAA E+A GDFDGDMYWIS N ELL YFKA  PW 
Sbjct: 661  TYIEDLVEIVGNAKFAIFFSTQGPRSAADEIANGDFDGDMYWISTNPELLHYFKAGPPWE 720

Query: 372  RVYSIPDSKKRNPQEFS-DVXXXXXXXXXXXXXXXPSFDMATAAESWLTFMDRLLTLGDD 548
            R  S     +R P E+S D                PS     AA+SWL +MDRLLTLGD+
Sbjct: 721  RSSSEKPPPQRKPIEYSPDELETELFDLFLESRFHPSIAKCAAADSWLVYMDRLLTLGDE 780

Query: 549  RATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSSI 728
             A EK  L  K+++L D+YY+A+DAPKSGKKV+VP++LK E YPH+MER     Y S+SI
Sbjct: 781  CAEEKGCLHQKMLKLADLYYEAVDAPKSGKKVEVPKDLKPERYPHFMER--TYQYTSTSI 838

Query: 729  LGQIYDRVIAYKNEAVLQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGDES 908
            LGQIYD V + + +   + ++  L CF   +  + +  WK  Y  YR EM +AL S D+ 
Sbjct: 839  LGQIYDLVASAQMDVPCE-DIELLPCFLEEVEPSGMEKWKGLYAQYRDEMNKALSSTDQK 897

Query: 909  KNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG-VEKCSFAW 1085
            K++ A+EVI+ YK+++Y A + EE ++  + I+ EA  IY + Y YA     + KC FAW
Sbjct: 898  KSN-ADEVIQNYKKILYGAQEYEERTRPREEIFREACEIYAISYFYAKEKSDIAKCGFAW 956

Query: 1086 RVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 1181
            +VAG ALC L A +    K+  +T L SVL++
Sbjct: 957  KVAGCALCELHALK---QKKNSITCLSSVLQE 985


>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
            RNA polymerase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 981

 Score =  369 bits (946), Expect = 2e-99
 Identities = 194/399 (48%), Positives = 265/399 (66%), Gaps = 6/399 (1%)
 Frame = +3

Query: 3    KTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILDIGPISGKVLVYRNPGMHFGDVHI 182
            K  LK G++P++ES+YLMGT DPTG L  DEVC+IL+ G ISG+VLVYRNPG+HFGD+HI
Sbjct: 589  KNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILESGQISGEVLVYRNPGLHFGDIHI 648

Query: 183  MKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDMYWISRNSELLKYFKANE 362
            +KA YVK +EE VGN+KY +FF  KG RS   E+A GDFDGDMY+ISRN ELL++FK +E
Sbjct: 649  LKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLEHFKPSE 708

Query: 363  PWNRVYSIPDSKKRNPQEFSDVXXXXXXXXXXXXXXXPSFD----MATAAESWLTFMDRL 530
            PW  V   P SK  + +  S +                 F     +  AA+SWLT MDRL
Sbjct: 709  PW--VSLTPPSKSNSGRAPSQLSPEELEEELFEMFLKAGFHASNVIGIAADSWLTIMDRL 766

Query: 531  LTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLS 710
            L LGD+RA EK  +K K+++LIDIYYDALDAPK G KV +P EL+ +++PHYMER  +  
Sbjct: 767  LILGDERAEEKAEMKKKMLKLIDIYYDALDAPKKGDKVYLPNELRPDIFPHYMER--EKK 824

Query: 711  YHSSSILGQIYDRVIAY-KNEAVLQREVWKLSCF-DIPIPEAYVNMWKARYESYRKEMKE 884
            + S+SILG IYD V +    E     E+ KL CF D P+ E ++   +  Y++YR EM +
Sbjct: 825  FKSTSILGLIYDFVKSQTTEEPTPSSEISKLPCFEDEPVSEFHMEKCRRWYDNYRSEMTQ 884

Query: 885  ALESGDESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHGV 1064
            A+++    K+++ANEVI++YKQ  Y A   E+S K+ + +Y +A+ +Y ++Y+YA+  GV
Sbjct: 885  AMKT---DKDESANEVIQRYKQEFYGAAGFEDSKKSLEELYPQALTLYKIVYDYAIHAGV 941

Query: 1065 EKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 1181
             KC F W+VAG  LC    + +   +EK L   PSVL++
Sbjct: 942  SKCGFVWKVAGPVLCRF--YLMKKMQEKSLVCAPSVLKE 978


>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
            gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 5;
            Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
            5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
            polymerase 5 [Arabidopsis thaliana]
          Length = 977

 Score =  366 bits (939), Expect = 1e-98
 Identities = 195/399 (48%), Positives = 263/399 (65%), Gaps = 6/399 (1%)
 Frame = +3

Query: 3    KTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILDIGPISGKVLVYRNPGMHFGDVHI 182
            K  LK GK+P++ES+YLMGT DPTG L  DEVC+IL+ G ISG+VLVYRNPG+HFGD+HI
Sbjct: 585  KNDLKAGKLPVTESYYLMGTVDPTGALKEDEVCVILESGQISGEVLVYRNPGLHFGDIHI 644

Query: 183  MKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDMYWISRNSELLKYFKANE 362
            +KA YVK +EE VGN+K+ +FF  KG RS   E+A GDFDGDMY+ISRN ELL+ FK +E
Sbjct: 645  LKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSE 704

Query: 363  PWNRVYSIPDSKKRNPQEFSDVXXXXXXXXXXXXXXXPSFD----MATAAESWLTFMDRL 530
            PW  V   P SK  + +  S +                 F     +  AA+SWLT MDR 
Sbjct: 705  PW--VSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRF 762

Query: 531  LTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLS 710
            L LGDDRA EK  +K K+++LIDIYYDALDAPK G KV +P +LK +++PHYMER  D  
Sbjct: 763  LILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMER--DKK 820

Query: 711  YHSSSILGQIYDRVIAYKNEAVL-QREVWKLSCF-DIPIPEAYVNMWKARYESYRKEMKE 884
            + S+SILG I+D V +   E      E+ KL CF D P+ E ++   +  Y++YR EM +
Sbjct: 821  FQSTSILGLIFDFVKSQTTEEPSPSSEISKLPCFEDEPVSEFHMQKCRLWYDNYRTEMTQ 880

Query: 885  ALESGDESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHGV 1064
            A+++    K+++ANEVI++YKQ  Y A   E+S K+ + +Y +A+A+Y ++Y+YA+  GV
Sbjct: 881  AMKT---DKDESANEVIQRYKQEFYGAAGFEDSKKSLEELYPQALALYKIVYDYAIHAGV 937

Query: 1065 EKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 1181
             KC F W+VAG  LC    +     +EK L   PSVL++
Sbjct: 938  SKCRFVWKVAGPVLCRF--YLNKKMQEKCLVCAPSVLKE 974


>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
            vesca subsp. vesca]
          Length = 1405

 Score =  363 bits (932), Expect = 8e-98
 Identities = 201/400 (50%), Positives = 263/400 (65%), Gaps = 10/400 (2%)
 Frame = +3

Query: 12   LKEGKIPISESFYLMGTADPTGVLNNDEVCIILDIGPISGKVLVYRNPGMHFGDVHIMKA 191
            L++G++ I +S+ LMGTADPTG L  DEVC     G +SGKVLVYR PG+H GD+H++KA
Sbjct: 1018 LRKGRLYIPDSYNLMGTADPTGTLKEDEVCD----GQLSGKVLVYRYPGLHIGDIHVLKA 1073

Query: 192  VYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDMYWISRNSELLKYFKANEPWN 371
             YVKEIE +VGNAKYGIFFS KG RS A EM  GDFDGD+YW+SRN +LL+++K +EPW 
Sbjct: 1074 TYVKEIEYIVGNAKYGIFFSCKGPRSIADEMGGGDFDGDLYWVSRNPQLLEWYKPSEPWI 1133

Query: 372  RVYSIPDSKK-------RNPQEFSDVXXXXXXXXXXXXXXXPSFDMATAAESWLTFMDRL 530
               SI   K         +P++  DV               PSF M+ AA++WL +MD  
Sbjct: 1134 EA-SISTKKNPSRCPSDHSPEDLEDV----LFRSFLTTRFEPSFAMSEAADNWLAWMDHF 1188

Query: 531  LTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLS 710
            LTLGD    EKN +K KI+QL+D+YY ALDA K G KV VP+ELK   +PHYM +  + S
Sbjct: 1189 LTLGDSNIHEKNNVKEKILQLVDLYYTALDAAKKGVKVDVPKELKVSCFPHYMGK--NRS 1246

Query: 711  YHSSSILGQIYDRVIAYKNEAVLQREVWKLSCFD-IPIPEAYVNMWKARYESYRKEMKEA 887
            Y S+SILG IY+RV  ++ E    +EV KL  FD   +P+A ++ W   +  YRKEM  A
Sbjct: 1247 YPSTSILGSIYNRVDEHQTEDRSLKEVEKLPAFDENEVPDACLDKWAELHRQYRKEMASA 1306

Query: 888  LESGD-ESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAIYHVIYEYA-MIHG 1061
            L+  D +SKN +A+ VI+KY++++YEA D EES +  + IY EA AIYHV Y++A  +  
Sbjct: 1307 LDDDDKQSKNQSADVVIRKYRKILYEANDFEESRRPIEEIYNEAHAIYHVCYDHAKRVGN 1366

Query: 1062 VEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 1181
            V+ CSFAWRVAG ALC L A       E+  TI+ SVL +
Sbjct: 1367 VKVCSFAWRVAGKALCQLHA---RNNNERFCTIVSSVLME 1403


>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
            gi|568843311|ref|XP_006475557.1| PREDICTED: probable
            RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
            sinensis] gi|557554498|gb|ESR64512.1| hypothetical
            protein CICLE_v10007331mg [Citrus clementina]
          Length = 1013

 Score =  358 bits (920), Expect = 2e-96
 Identities = 194/397 (48%), Positives = 261/397 (65%), Gaps = 4/397 (1%)
 Frame = +3

Query: 3    KTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILDIGPISG-KVLVYRNPGMHFGDVH 179
            K  L+ GK+P++ES+YLMGT DPTG+L ++EVCIIL  G +S  KVLVYRNPG+HFGD+H
Sbjct: 618  KKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIH 677

Query: 180  IMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDMYWISRNSELLKYFKAN 359
            ++KA YVKE+E+ VG +KY IFF   G RS A E+A GDFDGDMY++SRN ELLK+FK +
Sbjct: 678  VLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKES 737

Query: 360  EPWNRVYSIPDSKKRNPQEFS-DVXXXXXXXXXXXXXXXPSFDMATAAESWLTFMDRLLT 536
            E W        + KR P +FS +                PS   + AA+ W   MDR LT
Sbjct: 738  ERWMSTSKNLSANKR-PIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLT 796

Query: 537  LGDDRATEKNYLKGKIIQLIDIYYDALDAPK-SGKKVKVPQELKAEMYPHYMERWPDLSY 713
            LGD+ A EK  +K  +++LI+IYYDALDAPK SG KV+VP++LK E +P YM R   +S+
Sbjct: 797  LGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSF 856

Query: 714  HSSSILGQIYDRVIAYKNEAVLQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALE 893
             S+S+LG IY+ V +Y+       E+WKL CFD  +PEA +  WK  Y+ YR EMKEA++
Sbjct: 857  ESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKWKGYYDQYRWEMKEAID 916

Query: 894  SGDESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMI-HGVEK 1070
                 + +AA  VI+KYKQ++Y A + E+S++  + IY EA+AIY++ Y+ A     V  
Sbjct: 917  KCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITYDLAASRRQVSY 976

Query: 1071 CSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 1181
            CSFAWRVAGSAL    A R     ++ +    SVLR+
Sbjct: 977  CSFAWRVAGSALRKFYARR---QGDRSMLCSASVLRE 1010


>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
            gi|568843309|ref|XP_006475556.1| PREDICTED: probable
            RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
            sinensis] gi|557554497|gb|ESR64511.1| hypothetical
            protein CICLE_v10007331mg [Citrus clementina]
          Length = 1015

 Score =  358 bits (920), Expect = 2e-96
 Identities = 194/397 (48%), Positives = 261/397 (65%), Gaps = 4/397 (1%)
 Frame = +3

Query: 3    KTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILDIGPISG-KVLVYRNPGMHFGDVH 179
            K  L+ GK+P++ES+YLMGT DPTG+L ++EVCIIL  G +S  KVLVYRNPG+HFGD+H
Sbjct: 620  KKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIH 679

Query: 180  IMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDMYWISRNSELLKYFKAN 359
            ++KA YVKE+E+ VG +KY IFF   G RS A E+A GDFDGDMY++SRN ELLK+FK +
Sbjct: 680  VLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKES 739

Query: 360  EPWNRVYSIPDSKKRNPQEFS-DVXXXXXXXXXXXXXXXPSFDMATAAESWLTFMDRLLT 536
            E W        + KR P +FS +                PS   + AA+ W   MDR LT
Sbjct: 740  ERWMSTSKNLSANKR-PIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLT 798

Query: 537  LGDDRATEKNYLKGKIIQLIDIYYDALDAPK-SGKKVKVPQELKAEMYPHYMERWPDLSY 713
            LGD+ A EK  +K  +++LI+IYYDALDAPK SG KV+VP++LK E +P YM R   +S+
Sbjct: 799  LGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSF 858

Query: 714  HSSSILGQIYDRVIAYKNEAVLQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALE 893
             S+S+LG IY+ V +Y+       E+WKL CFD  +PEA +  WK  Y+ YR EMKEA++
Sbjct: 859  ESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKWKGYYDQYRWEMKEAID 918

Query: 894  SGDESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMI-HGVEK 1070
                 + +AA  VI+KYKQ++Y A + E+S++  + IY EA+AIY++ Y+ A     V  
Sbjct: 919  KCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITYDLAASRRQVSY 978

Query: 1071 CSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 1181
            CSFAWRVAGSAL    A R     ++ +    SVLR+
Sbjct: 979  CSFAWRVAGSALRKFYARR---QGDRSMLCSASVLRE 1012


>gb|AAC62123.1| hypothetical protein [Arabidopsis thaliana]
          Length = 929

 Score =  356 bits (914), Expect = 1e-95
 Identities = 196/431 (45%), Positives = 264/431 (61%), Gaps = 38/431 (8%)
 Frame = +3

Query: 3    KTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILDIGPISGKVLVYRNPGMHFGDVHI 182
            K  LK GK+P++ES+YLMGT DPTG L  DEVC+IL+ G ISG+VLVYRNPG+HFGD+HI
Sbjct: 505  KNDLKAGKLPVTESYYLMGTVDPTGALKEDEVCVILESGQISGEVLVYRNPGLHFGDIHI 564

Query: 183  MKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDMYWISRNSELLKYFKANE 362
            +KA YVK +EE VGN+K+ +FF  KG RS   E+A GDFDGDMY+ISRN ELL+ FK +E
Sbjct: 565  LKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSE 624

Query: 363  PWNRVYSIPDSKKRNPQEFSDVXXXXXXXXXXXXXXXPSFD----MATAAESWLTFMDRL 530
            PW  V   P SK  + +  S +                 F     +  AA+SWLT MDR 
Sbjct: 625  PW--VSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRF 682

Query: 531  LTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLS 710
            L LGDDRA EK  +K K+++LIDIYYDALDAPK G KV +P +LK +++PHYMER  D  
Sbjct: 683  LILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMER--DKK 740

Query: 711  YHSSSILGQIYDRVIAYKNE---------------------------------AVLQREV 791
            + S+SILG I+D V +   E                                  V   E+
Sbjct: 741  FQSTSILGLIFDFVKSQTTEEPSPSSGKGPLLVLLYTYNQITKEIINHDMCFTVVYNLEI 800

Query: 792  WKLSCF-DIPIPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLIYEAP 968
             KL CF D P+ E ++   +  Y++YR EM +A+++    K+++ANEVI++YKQ  Y A 
Sbjct: 801  SKLPCFEDEPVSEFHMQKCRLWYDNYRTEMTQAMKT---DKDESANEVIQRYKQEFYGAA 857

Query: 969  DMEESSKNTQVIYEEAVAIYHVIYEYAMIHGVEKCSFAWRVAGSALCNLCAWRIAGPKEK 1148
              E+S K+ + +Y +A+A+Y ++Y+YA+  GV KC F W+VAG  LC    +     +EK
Sbjct: 858  GFEDSKKSLEELYPQALALYKIVYDYAIHAGVSKCRFVWKVAGPVLCRF--YLNKKMQEK 915

Query: 1149 PLTILPSVLRD 1181
             L   PSVL++
Sbjct: 916  CLVCAPSVLKE 926


>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
            gi|557110064|gb|ESQ50361.1| hypothetical protein
            EUTSA_v10001897mg [Eutrema salsugineum]
          Length = 988

 Score =  355 bits (911), Expect = 2e-95
 Identities = 193/385 (50%), Positives = 252/385 (65%), Gaps = 7/385 (1%)
 Frame = +3

Query: 3    KTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILDIGPISGKVLVYRNPGMHFGDVHI 182
            K  LK G++P++ES+YLMGT DPTG L  DEVC+IL+ G ISG VLVYRNPG+HFGD+H+
Sbjct: 597  KNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILESGQISGDVLVYRNPGVHFGDIHV 656

Query: 183  MKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDMYWISRNSELLKYFKANE 362
            +KA YVK +EE VGN+KY +FF  KG RS   E+A GDFDGDMY+ISRN ELL+ FK +E
Sbjct: 657  LKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLEQFKPSE 716

Query: 363  PWNRVYSIPDSKK---RNPQEFSDVXXXXXXXXXXXXXXXPSFD-MATAAESWLTFMDRL 530
            PW  V   P SK    R P +FS                  S + +  AA+SWLT MDR 
Sbjct: 717  PW--VSLSPPSKSNSTRKPIDFSPEELEEELFDMFLKARFHSSNVIGMAADSWLTIMDRF 774

Query: 531  LTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLS 710
            LTLGD+RA EK  +K K++ LIDIYYDALDA K G KV +P  LK +++PHYMER  D  
Sbjct: 775  LTLGDERAEEKAEMKRKMLSLIDIYYDALDAAKKGVKVSLPDALKPDIFPHYMER--DKK 832

Query: 711  YHSSSILGQIYDRVIAY-KNEAVLQREVWKLSCF-DIPIPEAYVNMWKARYESYRKEMKE 884
            + S+SILG IYD V +    E     E+ KL CF D P+ E +    +  Y++YR EM +
Sbjct: 833  FKSTSILGIIYDFVQSQTAEEHTPSSEISKLQCFEDEPVSEFHKEKCRPWYDNYRAEMIQ 892

Query: 885  ALESGDESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAM-IHG 1061
            AL     +K+D A+EVI+KYKQ  Y A   E+S K+ + +Y +A+A+Y+++Y+YA+ +  
Sbjct: 893  AL----SNKDDTASEVIEKYKQEFYGAAGFEDSKKSLEELYPQALALYNIVYDYAIEMKS 948

Query: 1062 VEKCSFAWRVAGSALCNLCAWRIAG 1136
            V KC FAW+VAG  LC     +  G
Sbjct: 949  VRKCGFAWKVAGPVLCRFYLKKTGG 973


>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
            gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 3;
            Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
            3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
            polymerase 3 [Arabidopsis thaliana]
          Length = 992

 Score =  352 bits (903), Expect = 2e-94
 Identities = 188/398 (47%), Positives = 258/398 (64%), Gaps = 6/398 (1%)
 Frame = +3

Query: 3    KTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILDIGPISGKVLVYRNPGMHFGDVHI 182
            +  LK G+ PI ES+Y+MGT DPTG L  +E+C+IL  G ISG VLVYRNPG+HFGD+H+
Sbjct: 596  RNALKAGRFPIDESYYIMGTVDPTGELKENEICVILHSGQISGDVLVYRNPGLHFGDIHV 655

Query: 183  MKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDMYWISRNSELLKYFKANE 362
            +KA YVK +E+ VGNAK+ +FF  KG RS   E+A GDFDGDMY+ISRN +LL++FK +E
Sbjct: 656  LKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSE 715

Query: 363  PWNRVYSIPDSK---KRNPQEFSDVXXXXXXXXXXXXXXXPSFD-MATAAESWLTFMDRL 530
            PW  V S   SK    R P E S+                   D +  AA+ WL  MD  
Sbjct: 716  PW--VSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPF 773

Query: 531  LTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLS 710
            LTLGD+ A EK   K  I++LIDIYYDALDAPK G KV +P +L+ + +PHYMER P   
Sbjct: 774  LTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRD 833

Query: 711  YHSSSILGQIYDRVIAYKNEAVLQREVWKLSCF-DIPIPEAYVNMWKARYESYRKEMKEA 887
            + S+SILG I+D V ++  E     E+ KL  F D P+P+++++ + + YE+YR EM +A
Sbjct: 834  FRSTSILGLIFDTVDSHNAEEPPPSEISKLWYFEDEPVPKSHMDKFTSWYENYRSEMSQA 893

Query: 888  LESGDESK-NDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHGV 1064
            +   D+ K N   NEVI++YKQ  Y A   E+S+K+ + +Y +A+A+Y+V+Y+YA+  GV
Sbjct: 894  MMETDKVKRNQLTNEVIQRYKQDFYGAAGFEDSNKSLEELYPQALALYNVVYDYAIQEGV 953

Query: 1065 EKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLR 1178
             KC+FAW VAG  LC    + +   K+K +    SVL+
Sbjct: 954  AKCTFAWNVAGPVLCK---FYLKKTKDKSVVASTSVLK 988


>gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
          Length = 966

 Score =  352 bits (903), Expect = 2e-94
 Identities = 188/398 (47%), Positives = 258/398 (64%), Gaps = 6/398 (1%)
 Frame = +3

Query: 3    KTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILDIGPISGKVLVYRNPGMHFGDVHI 182
            +  LK G+ PI ES+Y+MGT DPTG L  +E+C+IL  G ISG VLVYRNPG+HFGD+H+
Sbjct: 570  RNALKAGRFPIDESYYIMGTVDPTGELKENEICVILHSGQISGDVLVYRNPGLHFGDIHV 629

Query: 183  MKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDMYWISRNSELLKYFKANE 362
            +KA YVK +E+ VGNAK+ +FF  KG RS   E+A GDFDGDMY+ISRN +LL++FK +E
Sbjct: 630  LKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSE 689

Query: 363  PWNRVYSIPDSK---KRNPQEFSDVXXXXXXXXXXXXXXXPSFD-MATAAESWLTFMDRL 530
            PW  V S   SK    R P E S+                   D +  AA+ WL  MD  
Sbjct: 690  PW--VSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPF 747

Query: 531  LTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLS 710
            LTLGD+ A EK   K  I++LIDIYYDALDAPK G KV +P +L+ + +PHYMER P   
Sbjct: 748  LTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRD 807

Query: 711  YHSSSILGQIYDRVIAYKNEAVLQREVWKLSCF-DIPIPEAYVNMWKARYESYRKEMKEA 887
            + S+SILG I+D V ++  E     E+ KL  F D P+P+++++ + + YE+YR EM +A
Sbjct: 808  FRSTSILGLIFDTVDSHNAEEPPPSEISKLWYFEDEPVPKSHMDKFTSWYENYRSEMSQA 867

Query: 888  LESGDESK-NDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHGV 1064
            +   D+ K N   NEVI++YKQ  Y A   E+S+K+ + +Y +A+A+Y+V+Y+YA+  GV
Sbjct: 868  MMETDKVKRNQLTNEVIQRYKQDFYGAAGFEDSNKSLEELYPQALALYNVVYDYAIQEGV 927

Query: 1065 EKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLR 1178
             KC+FAW VAG  LC    + +   K+K +    SVL+
Sbjct: 928  AKCTFAWNVAGPVLCK---FYLKKTKDKSVVASTSVLK 962