BLASTX nr result

ID: Rehmannia24_contig00016140 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00016140
         (572 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004239670.1| PREDICTED: double-stranded RNA-binding prote...    63   6e-08
ref|XP_006345796.1| PREDICTED: double-stranded RNA-binding prote...    62   1e-07

>ref|XP_004239670.1| PREDICTED: double-stranded RNA-binding protein 2-like [Solanum
           lycopersicum]
          Length = 553

 Score = 62.8 bits (151), Expect = 6e-08
 Identities = 52/149 (34%), Positives = 72/149 (48%), Gaps = 13/149 (8%)
 Frame = -1

Query: 572 PPIP-STQSTLLTRPPAFGTAPPVCVRQAVPVHAA--VKVEK-------ARFSGPPTSRA 423
           PP+P S+Q   + RPP  G APPVC+RQAVPV+AA  V+ E+        R SG   +  
Sbjct: 322 PPLPQSSQPPRVMRPPGLGVAPPVCIRQAVPVYAAPPVRAEELSTLDRVMRHSGLGMAPV 381

Query: 422 EEVQVSRAAPGRLDESPFSKPPLIGVEESLSSMSPPITIAPNAEAPSVQLEIPSSTEVGP 243
             V     AP  +DE   SK P    E  +  +     +   AE+P    E  S +EV P
Sbjct: 382 YAVPSVPKAPLLVDEPLASKAP----EMQVLDLPTCKAVLGKAESPHDHSEEKSCSEVQP 437

Query: 242 TVE---VKLPVSKAIISPPGSSKPSAEEE 165
           T     +   VS++   P   +K +AEE+
Sbjct: 438 TKREEPLDFEVSRSATMPVEGTKVAAEEK 466


>ref|XP_006345796.1| PREDICTED: double-stranded RNA-binding protein 2-like [Solanum
           tuberosum]
          Length = 506

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 51/149 (34%), Positives = 70/149 (46%), Gaps = 13/149 (8%)
 Frame = -1

Query: 572 PPIP-STQSTLLTRPPAFGTAPPVCVRQAVPVHAAVKVEKARFSGPPTSRAEEVQVSRAA 396
           PP+P S+Q   + RPP  G APPVC+RQAVPV+AA  V       P   R         A
Sbjct: 322 PPLPQSSQPPRVMRPPGLGLAPPVCIRQAVPVYAAPPVRAEEL--PTLDRVMRHSGLGVA 379

Query: 395 PGRLDESPFSKPPLIGVEESLSSMSPPI---------TIAPNAEAPSVQLEIPSSTEVGP 243
           P     S    PPL+ V+E L+S +P I          +   AE+     E  S +EV P
Sbjct: 380 PVYAVPSVPKAPPLL-VDEPLASKAPEIQVLDLPTCKAVLGKAESLHDHSEEKSCSEVQP 438

Query: 242 TVE---VKLPVSKAIISPPGSSKPSAEEE 165
           T     +   VS++   P   +K +A+E+
Sbjct: 439 TKREEPLDFEVSRSATMPVEGTKVAAKEK 467


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