BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00016007
         (3108 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlise...  1623   0.0  
ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a...  1564   0.0  
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub...  1561   0.0  
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...  1557   0.0  
ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV a...  1543   0.0  
ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D sub...  1529   0.0  
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...  1510   0.0  
emb|CBI21137.3| unnamed protein product [Vitis vinifera]             1491   0.0  
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr...  1449   0.0  
gb|EOY29336.1| DNA-directed RNA polymerase isoform 1 [Theobroma ...  1435   0.0  
gb|EMJ26641.1| hypothetical protein PRUPE_ppa000410mg [Prunus pe...  1422   0.0  
ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D sub...  1409   0.0  
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [...  1400   0.0  
ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D sub...  1394   0.0  
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...  1392   0.0  
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...  1387   0.0  
ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV a...  1386   0.0  
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...  1379   0.0  
ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV a...  1374   0.0  
gb|ESW08936.1| hypothetical protein PHAVU_009G087100g [Phaseolus...  1369   0.0  

>gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlisea aurea]
          Length = 1205

 Score = 1623 bits (4204), Expect = 0.0
 Identities = 787/1038 (75%), Positives = 906/1038 (87%), Gaps = 3/1038 (0%)
 Frame = -2

Query: 3107 NDFVKHGIQQVFDSVGEITVEPSFDPSKKGD-GDWRYASLKFGKVTLEHPTFFAGEKFSS 2931
            N+F+ HGI Q+F S+GEI VEP +DPSK+GD G+W+ ASLKFGKV LE P+F+ GEKFSS
Sbjct: 75   NNFINHGIHQLFASIGEIIVEPGYDPSKRGDDGEWQKASLKFGKVNLERPSFWTGEKFSS 134

Query: 2930 VDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQV-YTKGLSRSDKFKTGVENFVDKTVLN 2754
             +G +++L+L P++ARLQNMTY++RIKVETHL+V YT+GL RS+KF TGV   V +T L 
Sbjct: 135  AEGAKDNLELHPKHARLQNMTYAARIKVETHLEVVYTEGLVRSEKFTTGVSTHVQRTTLK 194

Query: 2753 DYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWV 2574
                ++ FG+LPVMV SDLCW+ S+ K+DCEFDQGGYF+IKGAEKTFIAQEQ+CL RLWV
Sbjct: 195  SLSLEINFGKLPVMVNSDLCWLKSTGKKDCEFDQGGYFIIKGAEKTFIAQEQICLKRLWV 254

Query: 2573 TKTPTWTVAYRPVSKRKRVYIKLVPKVENVMGADKILTVYFYVTEFPIWVLFFALGVSND 2394
            +K PTWT++YRP++KR+R+Y+KLVPKVE+    +KILTVYF   E PIW+LFFALG  ND
Sbjct: 255  SKDPTWTISYRPITKRRRIYLKLVPKVESAPVGEKILTVYFSFVEMPIWILFFALGARND 314

Query: 2393 REVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVE 2214
            +EVV +ID+DIEDSAIANIL+ASI+DAD KYEGFRK G+A+KH++DLM+  K PP ESVE
Sbjct: 315  KEVVKMIDMDIEDSAIANILLASIHDADSKYEGFRKNGSAIKHLKDLMQEGKYPPTESVE 374

Query: 2213 ECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDXXXXXXXXXXXXXXXXL 2034
            E  + +LFP+L S  QKAC LAYMVKCLLE Y+GRRKVDNRDD                L
Sbjct: 375  EYFQIHLFPHLKSSVQKACFLAYMVKCLLECYKGRRKVDNRDDLRNKRLELAGELLEREL 434

Query: 2033 KIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERV 1854
            +I IKHAER M++S+QRDLD+ R+LQ I+HYLDASIITNGLSRAFSTGAWSHPYK+MER+
Sbjct: 435  RIQIKHAERRMMRSMQRDLDKGRDLQTIDHYLDASIITNGLSRAFSTGAWSHPYKRMERI 494

Query: 1853 SGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLV 1674
            SG+VAT+RRTNPLQA ADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLV
Sbjct: 495  SGIVATLRRTNPLQAIADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLV 554

Query: 1673 KNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSS 1494
            KNLAS+GLVST +L QE LL++FRECGME+L DD SSLLDGK+KIFLDGD VG+C+DSSS
Sbjct: 555  KNLASLGLVSTEVLDQEGLLKKFRECGMEQLADDTSSLLDGKHKIFLDGDLVGVCRDSSS 614

Query: 1493 FVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKGDFSF 1314
            FVS LRR+R++ EVP+QVEIK D+ +GEVR+F DAGRILRPLLVV+NL+KI DLK    F
Sbjct: 615  FVSMLRRRRQKNEVPHQVEIKMDQSNGEVRVFADAGRILRPLLVVRNLRKINDLKSHVFF 674

Query: 1313 QSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIP 1134
            QSLLD G++E IGPEEEEDCQTAWG K+LF AEL+NPPV+Y+HCELDSSFLLGLSCG+IP
Sbjct: 675  QSLLDVGIVELIGPEEEEDCQTAWGTKYLFMAELENPPVKYSHCELDSSFLLGLSCGIIP 734

Query: 1133 FANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSK 954
            FANHDHARRVLYQSEKHSQQAIG+STT+P+IR+DTNSHQLYYPQ+PLFRT+L+DCLGK  
Sbjct: 735  FANHDHARRVLYQSEKHSQQAIGFSTTSPNIRVDTNSHQLYYPQKPLFRTVLSDCLGKLT 794

Query: 953  LSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEV 774
             S  +K ++P P FFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFR+EHVRSYK++V
Sbjct: 795  DSCRRKGIIPLPPFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHVRSYKSDV 854

Query: 773  ENPE-APGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVD 597
            +N E AP KK K DDL+SFGK QSKIGRVDSL++DGFPYVGANLQTGDIVIGK  A+GVD
Sbjct: 855  DNSEAAPVKKFKADDLISFGKVQSKIGRVDSLDEDGFPYVGANLQTGDIVIGKCTATGVD 914

Query: 596  HSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 417
            HSIKLKHTERGMVQKV+LS++DEG+N+AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ
Sbjct: 915  HSIKLKHTERGMVQKVILSADDEGRNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 974

Query: 416  ENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDIT 237
            ENFPFT+QGIVPDIVINPHAFPSRQTPGQ               LKYATPFS+PSVEDIT
Sbjct: 975  ENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGGLKYATPFSSPSVEDIT 1034

Query: 236  AQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTR 57
            AQLHRLGFSRWG E+VYDGRTGE + SLIFMGPTFYQRLTHM+EDKVKFRNTGPVHPLTR
Sbjct: 1035 AQLHRLGFSRWGAEKVYDGRTGEALKSLIFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTR 1094

Query: 56   QPVADRKRFGGIKFGEME 3
            QPVADRKRFGGIKFGEME
Sbjct: 1095 QPVADRKRFGGIKFGEME 1112


>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1217

 Score = 1564 bits (4050), Expect = 0.0
 Identities = 770/1038 (74%), Positives = 880/1038 (84%), Gaps = 3/1038 (0%)
 Frame = -2

Query: 3107 NDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSV 2928
            NDF+ +GIQ+VFDSVGEI VEP +DPSK+GDGDW++AS+KFGKVTLE P F+AGEKFS+ 
Sbjct: 92   NDFINYGIQRVFDSVGEIHVEPGYDPSKRGDGDWKHASVKFGKVTLERPKFWAGEKFSA- 150

Query: 2927 DGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDY 2748
            DG +E+L L PR+ARLQNMTYS+RI VETH+QVYTK L RSDKFKTGV+ FVDK    + 
Sbjct: 151  DGGKEYLDLLPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKTGVDQFVDKECEVED 210

Query: 2747 HSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTK 2568
              DV+ GR+PVMV S+LCWMN  +K DCEFD GGYF++KGAEKTFIAQEQ+CL RLWV+ 
Sbjct: 211  KRDVLIGRIPVMVNSELCWMNGVDKLDCEFDHGGYFIVKGAEKTFIAQEQLCLKRLWVSN 270

Query: 2567 TPTWTVAYRPVSKRKRVYIKLVP--KVENVMGADKILTVYFYVTEFPIWVLFFALGVSND 2394
             PTW V YRP  KRKRVYIKL    K+E++ G +K L+VY  + E PIWVLFFALGVS+D
Sbjct: 271  NPTWMVGYRPGEKRKRVYIKLTETLKLEHIKGGEKALSVYI-LAEMPIWVLFFALGVSSD 329

Query: 2393 REVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVE 2214
            REVVNLID+DIED+ I NIL+ASI++ADK  E FRK   A+ +++ L+K+ K PP+ESVE
Sbjct: 330  REVVNLIDVDIEDTTIVNILVASIHEADKNCEDFRKGKKALAYVDRLIKNCKFPPQESVE 389

Query: 2213 ECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDXXXXXXXXXXXXXXXXL 2034
            ECI  YLFPNLS  +QKA  L YMVKCLL ++ GRRKVDNRDD                L
Sbjct: 390  ECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIGRRKVDNRDDFRNKRLELAGELLEREL 449

Query: 2033 KIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERV 1854
            + HIKHAER MVK++QRDL  DR++QPIEHYLDASIITNGLSRAFSTG W HPYK+MERV
Sbjct: 450  RAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRMERV 509

Query: 1853 SGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLV 1674
            SGVVAT+RRTNPLQ TADMRK+RQQV+YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLV
Sbjct: 510  SGVVATLRRTNPLQMTADMRKSRQQVTYTGKVGDARYPHPSHWGKLCFLSTPDGENCGLV 569

Query: 1673 KNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSS 1494
            KNLASMGLVST IL+    L+    CGM+KL DD ++ L GK K+ LDG+WVG+C+DS+ 
Sbjct: 570  KNLASMGLVSTIILKP--FLETLFRCGMQKLVDDCATSLHGKQKVLLDGEWVGVCEDSAL 627

Query: 1493 FVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKG-DFS 1317
            FVSKLRRKRRR EVP+QVE+K+D+  GEVRIF D+GRILRPLLVV NLKKIK LKG D+ 
Sbjct: 628  FVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFSDSGRILRPLLVVSNLKKIKALKGGDYG 687

Query: 1316 FQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLI 1137
            FQSLLD+G+IEFIGPEEEEDC+TAWG++++  A+ +NPP +YTHCELD SFLLGLSCG+I
Sbjct: 688  FQSLLDNGIIEFIGPEEEEDCRTAWGVEYILKADKENPPAKYTHCELDMSFLLGLSCGII 747

Query: 1136 PFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKS 957
            PFANHDHARRVLYQSEKHSQQAIG+ST NP+ R+DTN+HQLYYPQRPLFRT+LAD LGK 
Sbjct: 748  PFANHDHARRVLYQSEKHSQQAIGFSTVNPNNRVDTNTHQLYYPQRPLFRTMLADSLGKP 807

Query: 956  KLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAE 777
            K + +QK MLPRPE+FNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFR+EHVRSYKAE
Sbjct: 808  KCTQYQKGMLPRPEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHVRSYKAE 867

Query: 776  VENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVD 597
            V+N EA  KK KI+D V+FGKTQSKIGRVDSL+DDGFP++GANLQ+GDI+IGK A SG D
Sbjct: 868  VDNKEAMAKKLKIEDSVNFGKTQSKIGRVDSLDDDGFPFIGANLQSGDIIIGKFAESGAD 927

Query: 596  HSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 417
            HS+KLKHTERGMVQKV+LS+NDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ
Sbjct: 928  HSVKLKHTERGMVQKVLLSANDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 987

Query: 416  ENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDIT 237
            ENFPFT QGIVPDIVINPHAFPSRQTPGQ                KYATPFST SV+ I 
Sbjct: 988  ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGGQKYATPFSTLSVDAIM 1047

Query: 236  AQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTR 57
             QL   GF+RWG+ERVY+GRTGE VHSLIFMGPTFYQRL HM+EDKVKFRNTGPVHPLTR
Sbjct: 1048 EQLQGRGFTRWGNERVYNGRTGEMVHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTR 1107

Query: 56   QPVADRKRFGGIKFGEME 3
            QPVADRKRFGGIKFGEME
Sbjct: 1108 QPVADRKRFGGIKFGEME 1125


>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
            lycopersicum]
          Length = 1217

 Score = 1561 bits (4043), Expect = 0.0
 Identities = 770/1038 (74%), Positives = 878/1038 (84%), Gaps = 3/1038 (0%)
 Frame = -2

Query: 3107 NDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSV 2928
            NDF+ +GIQ+VFDSVGEI VEP +DPSK+GDGDW++AS+KFGKVTLE P F+AGEKFS V
Sbjct: 92   NDFINYGIQRVFDSVGEIHVEPGYDPSKRGDGDWKHASVKFGKVTLERPKFWAGEKFS-V 150

Query: 2927 DGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDY 2748
            DG +E+L L PR+ARLQNMTYS+RI VETH+QVYTK L RSDKFKTGV+ FVDK    + 
Sbjct: 151  DGGKEYLDLLPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKTGVDRFVDKEWEVED 210

Query: 2747 HSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTK 2568
              DV+ GR+PVMV S+LCWMN  +K DCEFD GGYF++KGAEKTFIAQEQ+CL RLWV+ 
Sbjct: 211  KRDVLIGRIPVMVNSELCWMNGVDKLDCEFDHGGYFIVKGAEKTFIAQEQLCLKRLWVSN 270

Query: 2567 TPTWTVAYRPVSKRKRVYIKLVP--KVENVMGADKILTVYFYVTEFPIWVLFFALGVSND 2394
             PTW V YRP  KRKRVYIKL    K+E++ G +K L+VY  + E PIWVLFFALGVS+D
Sbjct: 271  NPTWMVGYRPGEKRKRVYIKLTETLKLEHIKGGEKALSVYI-LAEMPIWVLFFALGVSSD 329

Query: 2393 REVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVE 2214
            REVVNLID+DIED+ I NIL+ASI++ADK  E FRK   A+ +++ L+K+ K PP+ESVE
Sbjct: 330  REVVNLIDVDIEDTTIVNILVASIHEADKNCEDFRKGKKALAYVDRLIKNCKFPPQESVE 389

Query: 2213 ECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDXXXXXXXXXXXXXXXXL 2034
            ECI  YLFPNLS  +QKA  L YMVKCLL ++ GRRKVDNRDD                L
Sbjct: 390  ECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIGRRKVDNRDDFRNKRLELAGELLEREL 449

Query: 2033 KIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERV 1854
            + HIKHAER MVK++QRDL  DR++QPIEHYLDASIITNGLSRAFSTG W HPYK+MERV
Sbjct: 450  RAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRMERV 509

Query: 1853 SGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLV 1674
            SGVVAT+RRTNPLQ TADMRK+RQQV+YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLV
Sbjct: 510  SGVVATLRRTNPLQMTADMRKSRQQVTYTGKVGDARYPHPSHWGKLCFLSTPDGENCGLV 569

Query: 1673 KNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSS 1494
            KNLASMGLVST IL+    L+    CGM+KL DD S+ L GK K+ LDG+WVG+C+DS+ 
Sbjct: 570  KNLASMGLVSTIILKP--FLETLFRCGMQKLVDDCSTSLHGKQKVLLDGEWVGVCEDSAL 627

Query: 1493 FVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKG-DFS 1317
            FVSKLRRKRRR EVP+QVE+K+D+  GEVRIF D GRILRPLLVV NLKKIK LKG D+ 
Sbjct: 628  FVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFSDPGRILRPLLVVSNLKKIKALKGGDYG 687

Query: 1316 FQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLI 1137
            FQSLLD+G+IE IGPEEEEDC+TAWG++++  A+ +NPP +YTHCELD SFLLGLSCG+I
Sbjct: 688  FQSLLDNGIIELIGPEEEEDCRTAWGVEYILKADKENPPAKYTHCELDMSFLLGLSCGII 747

Query: 1136 PFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKS 957
            PFANHDHARRVLYQSEKHSQQAIG+ST NP+ R+DTN+HQLYYPQRPLFRT+LAD LGK 
Sbjct: 748  PFANHDHARRVLYQSEKHSQQAIGFSTVNPNNRVDTNTHQLYYPQRPLFRTMLADSLGKP 807

Query: 956  KLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAE 777
            K + +QK MLPRPE+FNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFR+EHVRSYKAE
Sbjct: 808  KCAQYQKGMLPRPEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHVRSYKAE 867

Query: 776  VENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVD 597
            V+N EA  KK KI+D V+FGKTQSKIGRVDSL+DDGFP++GANLQ+GDI+IGK + SG D
Sbjct: 868  VDNKEAMAKKLKIEDSVNFGKTQSKIGRVDSLDDDGFPFIGANLQSGDIIIGKFSESGAD 927

Query: 596  HSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 417
            HS+KLKHTERGMVQKV+LS+NDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ
Sbjct: 928  HSVKLKHTERGMVQKVLLSANDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 987

Query: 416  ENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDIT 237
            ENFPFT QGIVPDIVINPHAFPSRQTPGQ                KYATPFST SV+ I 
Sbjct: 988  ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGGQKYATPFSTLSVDAIM 1047

Query: 236  AQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTR 57
             QL   GF+RWG+ERVY+GRTGE VHSLIFMGPTFYQRL HM+EDKVKFRNTGPVHPLTR
Sbjct: 1048 EQLQGRGFTRWGNERVYNGRTGEMVHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTR 1107

Query: 56   QPVADRKRFGGIKFGEME 3
            QPVADRKRFGGIKFGEME
Sbjct: 1108 QPVADRKRFGGIKFGEME 1125


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score = 1557 bits (4032), Expect = 0.0
 Identities = 769/1038 (74%), Positives = 876/1038 (84%), Gaps = 3/1038 (0%)
 Frame = -2

Query: 3107 NDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSV 2928
            NDF+ +GIQ+VFDSVGEI VEP +DPSK+GDGDW++AS+KFGKVTLE P F+AGEKFS V
Sbjct: 86   NDFINYGIQRVFDSVGEIHVEPGYDPSKRGDGDWKHASVKFGKVTLERPKFWAGEKFS-V 144

Query: 2927 DGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDY 2748
             G +E+L L PR+ARLQNMTYS+RI VETH+QVYTK L RSDKFKTGV+ FVDK    + 
Sbjct: 145  GGGKEYLDLLPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKTGVDRFVDKEWEVEG 204

Query: 2747 HSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTK 2568
              DV+ GR+PVMV S+LCWMN  +K DCEFD GGYF+ KGAEKTFIAQEQ+CL RLWV+ 
Sbjct: 205  KRDVLIGRIPVMVNSELCWMNGVDKLDCEFDHGGYFIAKGAEKTFIAQEQLCLKRLWVSN 264

Query: 2567 TPTWTVAYRPVSKRKRVYIKLVP--KVENVMGADKILTVYFYVTEFPIWVLFFALGVSND 2394
             PTW V YRP  KRKRVYIKL    K+E++ G +K L+VY  + E PIWVLFFALGVS+D
Sbjct: 265  NPTWMVGYRPGEKRKRVYIKLTETLKLEHIKGGEKALSVYI-LAEMPIWVLFFALGVSSD 323

Query: 2393 REVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVE 2214
            REVVNLID+DIED+ I NIL+ASI++ADK  E FRK   A+ +++ L+K+ K PP+ESVE
Sbjct: 324  REVVNLIDVDIEDTTIVNILVASIHEADKNCEDFRKGKKALAYVDRLIKNCKFPPQESVE 383

Query: 2213 ECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDXXXXXXXXXXXXXXXXL 2034
            ECI  YLFPNLS  +QKA  L YMVKCLL ++ GRRKVDNRDD                L
Sbjct: 384  ECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIGRRKVDNRDDFRNKRLELAGELLEREL 443

Query: 2033 KIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERV 1854
            + HIKHAER MVK++QRDL  DR++QPIEHYLDASIITNGLSRAFSTG W HPYK+MERV
Sbjct: 444  RAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRMERV 503

Query: 1853 SGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLV 1674
            SGVVAT+RRTNPLQ TADMRK+RQQV+YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLV
Sbjct: 504  SGVVATLRRTNPLQMTADMRKSRQQVTYTGKVGDARYPHPSHWGKLCFLSTPDGENCGLV 563

Query: 1673 KNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSS 1494
            KNLASMGLVST IL+    L+    CGM+KL DD S+ L GK K+ LDG+WVG+C+DS+ 
Sbjct: 564  KNLASMGLVSTIILKP--FLETLFRCGMQKLVDDCSTSLHGKQKVLLDGEWVGVCEDSAL 621

Query: 1493 FVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKG-DFS 1317
            FVSKLRRKRRR EVP+QVE+K+D+  GEVRIF D GRILRPLLVV NLKKIK LKG D+ 
Sbjct: 622  FVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFSDPGRILRPLLVVSNLKKIKALKGGDYG 681

Query: 1316 FQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLI 1137
            FQSLLD+G+IE IGPEEEEDC+TAWG++++  A+ +NPP +YTHCELD SFLLGLSCG+I
Sbjct: 682  FQSLLDNGIIELIGPEEEEDCRTAWGVEYILKADKENPPAKYTHCELDMSFLLGLSCGII 741

Query: 1136 PFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKS 957
            PFANHDHARRVLYQSEKHSQQAIG+ST NP+ R+DTN+HQLYYPQRPLFRT+LAD LGK 
Sbjct: 742  PFANHDHARRVLYQSEKHSQQAIGFSTVNPNNRVDTNTHQLYYPQRPLFRTMLADSLGKP 801

Query: 956  KLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAE 777
            K + +QK MLPRPE+FNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFR+EHVRSYKAE
Sbjct: 802  KCAQYQKGMLPRPEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHVRSYKAE 861

Query: 776  VENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVD 597
            V+N EA  KK KI+D V+FGKTQSKIGRVDSL+DDGFP++GANLQ+GDI+IGK + SG D
Sbjct: 862  VDNKEAMAKKLKIEDSVNFGKTQSKIGRVDSLDDDGFPFIGANLQSGDIIIGKFSESGAD 921

Query: 596  HSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 417
            HS+KLKHTERGMVQKV+LS+NDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ
Sbjct: 922  HSVKLKHTERGMVQKVLLSANDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 981

Query: 416  ENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDIT 237
            ENFPFT QGIVPDIVINPHAFPSRQTPGQ                KYATPFST SV+ I 
Sbjct: 982  ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGGQKYATPFSTLSVDAIM 1041

Query: 236  AQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTR 57
             QL   GF+RWG+ERVY+GRTGE VHSLIFMGPTFYQRL HM+EDKVKFRNTGPVHPLTR
Sbjct: 1042 EQLQGRGFTRWGNERVYNGRTGEMVHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTR 1101

Query: 56   QPVADRKRFGGIKFGEME 3
            QPVADRKRFGGIKFGEME
Sbjct: 1102 QPVADRKRFGGIKFGEME 1119


>ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1219

 Score = 1543 bits (3994), Expect = 0.0
 Identities = 756/1042 (72%), Positives = 875/1042 (83%), Gaps = 7/1042 (0%)
 Frame = -2

Query: 3107 NDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSV 2928
            NDF+++GIQ+VFDSVGEI VEP +DPSKKG+G+W++AS+KFGKVTL+ P F+AGEKFS+ 
Sbjct: 90   NDFIRYGIQRVFDSVGEIHVEPGYDPSKKGEGEWKHASVKFGKVTLDRPKFWAGEKFSAY 149

Query: 2927 DGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDY 2748
            +G +E+L L PR+ARLQNMTYS+RI VETH+QV+TK L RSDKFKTGVE FVDK  + + 
Sbjct: 150  NG-EEYLDLWPRHARLQNMTYSARIIVETHVQVFTKKLVRSDKFKTGVEQFVDKECVMED 208

Query: 2747 HSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTK 2568
              DV  GR+PVMV S+LCWM+ +++ DC+FD GGYF++KGAEK FIAQEQ+CL RLWV+ 
Sbjct: 209  KRDVFIGRIPVMVNSELCWMSGADRPDCDFDHGGYFIVKGAEKIFIAQEQICLKRLWVSN 268

Query: 2567 TPTWTVAYRPVSKRKRVYIKLVP--KVENVMGADKILTVYFYVTEFPIWVLFFALGVSND 2394
              TW VAYR   KR RVY+KL    K E++ G  K L+VYF + E PIWVLFFALGVS+D
Sbjct: 269  HSTWMVAYRSGEKRNRVYLKLTETLKHEHIKGEAKALSVYF-LAEMPIWVLFFALGVSSD 327

Query: 2393 REVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVE 2214
            RE+V+LID+DI+D+ I NIL+ASI+DADK  E FRK   A+ +++ L+KS K PP+ESVE
Sbjct: 328  REIVDLIDVDIKDTNIINILVASIHDADKNCEDFRKGKKALAYVDRLIKSCKFPPQESVE 387

Query: 2213 ECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDXXXXXXXXXXXXXXXXL 2034
            ECIK YLFPNLS  +QKA  L YMVKCLL +Y GRRKVDNRDD                L
Sbjct: 388  ECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYIGRRKVDNRDDFRNKRLDLAGELLEREL 447

Query: 2033 KIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERV 1854
            + HIKHAER MVK++QRDL  DR++QP+EHYLDASIITNGLSRAFSTG W HPYK+MERV
Sbjct: 448  RAHIKHAERRMVKALQRDLCGDRQVQPLEHYLDASIITNGLSRAFSTGHWCHPYKRMERV 507

Query: 1853 SGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLV 1674
            SGVVAT+RRTNPLQ TAD+RKTRQQV+YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLV
Sbjct: 508  SGVVATLRRTNPLQMTADLRKTRQQVTYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLV 567

Query: 1673 KNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSS 1494
            KNLASMGLVSTT+L+   LL+    CGM+KL DD ++ L GK K+ LDGDWVG+C+DS+ 
Sbjct: 568  KNLASMGLVSTTVLKP--LLETLFRCGMQKLVDDSATSLHGKQKVLLDGDWVGVCEDSAL 625

Query: 1493 FVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLK----- 1329
            FVSKLRRKRRR EVP+QVE+K+D+   EVRIF DAGRI+RPLLVV NLK IK LK     
Sbjct: 626  FVSKLRRKRRRNEVPHQVEVKRDEQQDEVRIFSDAGRIMRPLLVVSNLKNIKSLKDGMKG 685

Query: 1328 GDFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLS 1149
            GD+ FQ+LLD G+IE IGPEEEEDC+TAWG+++L  A+ +NPPV YTHCELD SFLLGLS
Sbjct: 686  GDYGFQTLLDKGIIELIGPEEEEDCRTAWGVEYLLKADKENPPVNYTHCELDMSFLLGLS 745

Query: 1148 CGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADC 969
            CGLIPFANHDHARRVLYQSEKHSQQAIG+ST NP+ R+DTN+HQLYYPQRPLF T+L+D 
Sbjct: 746  CGLIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNARVDTNTHQLYYPQRPLFGTMLSDS 805

Query: 968  LGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRS 789
            LGK K   HQK ML RPE++NGQCAIVAVNVHLGYNQEDS+VMNRASLERGMFR+EHVRS
Sbjct: 806  LGKPKCGRHQKGMLSRPEYYNGQCAIVAVNVHLGYNQEDSVVMNRASLERGMFRSEHVRS 865

Query: 788  YKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAA 609
            YKAEV+N EA GKK K++D V+FGKTQSKIGRVDSL+DDGFP++GANLQ+GDI+IGK+A 
Sbjct: 866  YKAEVDNKEAMGKKSKVEDSVNFGKTQSKIGRVDSLDDDGFPFIGANLQSGDIIIGKYAE 925

Query: 608  SGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGF 429
            SG DHS+K+KHTERGMVQKV+LS+ND+GKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLG+
Sbjct: 926  SGADHSVKMKHTERGMVQKVLLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGY 985

Query: 428  LESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSV 249
            LESQENFPFT QGIVPDIVINPHAFPSRQTPGQ                KYATPFS  SV
Sbjct: 986  LESQENFPFTVQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGGEKYATPFSALSV 1045

Query: 248  EDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVH 69
            + I  QLH  GFSRWG ERVY+GRTGE VHSLIFMGPTFYQRL HM+EDKVKFRNTGPVH
Sbjct: 1046 DAILKQLHGRGFSRWGSERVYNGRTGEMVHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVH 1105

Query: 68   PLTRQPVADRKRFGGIKFGEME 3
            PLTRQPVADRKRFGGIKFGEME
Sbjct: 1106 PLTRQPVADRKRFGGIKFGEME 1127


>ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Solanum
            lycopersicum]
          Length = 1219

 Score = 1530 bits (3960), Expect = 0.0
 Identities = 752/1042 (72%), Positives = 869/1042 (83%), Gaps = 7/1042 (0%)
 Frame = -2

Query: 3107 NDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSV 2928
            NDF+++GIQ+VFDSVGEI VEP +DPSKKG+G+W++AS+KFG V L+ P F+AGEK+S+ 
Sbjct: 90   NDFIRYGIQKVFDSVGEIHVEPGYDPSKKGEGEWKHASVKFGNVILDRPKFWAGEKYSAY 149

Query: 2927 DGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDY 2748
            +G +E+L + PR+ARLQNMTYS+RI VETH+QV+TK L RSDKFKTGVE FVDK  + + 
Sbjct: 150  NG-EEYLNMWPRHARLQNMTYSARIIVETHVQVFTKKLVRSDKFKTGVEQFVDKECVMED 208

Query: 2747 HSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTK 2568
              DV  GR+PVMV S+LCWM+ +++ DCEFD GGYF++KGAEK FIAQEQMCL RLWV+ 
Sbjct: 209  KRDVFIGRIPVMVNSELCWMSGADRLDCEFDHGGYFIVKGAEKIFIAQEQMCLKRLWVSN 268

Query: 2567 TPTWTVAYRPVSKRKRVYIKLVP--KVENVMGADKILTVYFYVTEFPIWVLFFALGVSND 2394
              TW VAYR   KR RVY+KL    K E + G  K L+VYF + E PIWVLFFALGVS+D
Sbjct: 269  HYTWMVAYRSGEKRNRVYLKLTETLKHEQIKGEAKSLSVYF-LAEMPIWVLFFALGVSSD 327

Query: 2393 REVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVE 2214
            REVV+LID+DI+D+ I NIL+ASI+DADK  E FRK   A+ +++ L+KS K PP+ESVE
Sbjct: 328  REVVDLIDVDIKDNKIINILVASIHDADKNCEDFRKGKRALAYVDRLIKSCKFPPQESVE 387

Query: 2213 ECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDXXXXXXXXXXXXXXXXL 2034
            ECIK YLFPNLS  +QKA  L YMVKCLL +Y GRRKVDNRDD                L
Sbjct: 388  ECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYIGRRKVDNRDDFRNKRLDLAGELLEREL 447

Query: 2033 KIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERV 1854
            ++HIKHAER MVK++QRDL  DR++ PIEHYLDASIITNGLSRAFSTG W HPYK+MERV
Sbjct: 448  RVHIKHAERRMVKALQRDLCGDRQVHPIEHYLDASIITNGLSRAFSTGHWCHPYKRMERV 507

Query: 1853 SGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLV 1674
            SGVVAT+RRTNPLQ TAD+RKTRQQV+YTG+VGDARYP+PSHWGK+CFLSTPDGENCGLV
Sbjct: 508  SGVVATLRRTNPLQMTADLRKTRQQVTYTGKVGDARYPNPSHWGKVCFLSTPDGENCGLV 567

Query: 1673 KNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSS 1494
            KNLASMGLVSTT+L    LL+    CGM+KL DD ++ L GK K+ LDGDWVG+C+DS+ 
Sbjct: 568  KNLASMGLVSTTVLMP--LLETLFRCGMQKLVDDCATSLHGKQKVLLDGDWVGVCEDSAL 625

Query: 1493 FVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKG---- 1326
            FVSKLRRKRRR EVP+QVE+K+D+   EVRIF DAGRI+RPLLVV NLK IK L G    
Sbjct: 626  FVSKLRRKRRRNEVPHQVEVKRDEQQDEVRIFSDAGRIMRPLLVVSNLKNIKALNGGVKG 685

Query: 1325 -DFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLS 1149
             D+ FQ+LLD G+IE IGPEEEEDC+TAWG+++L  A+ +NPPV YTHCELD SFLLGLS
Sbjct: 686  GDYGFQTLLDKGIIELIGPEEEEDCRTAWGVEYLLKADKENPPVNYTHCELDMSFLLGLS 745

Query: 1148 CGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADC 969
            CGLIPFANHDHARRVLYQSEKHSQQAIG+ST NP+IR+DTN+HQLYYPQRPLF T+L+D 
Sbjct: 746  CGLIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNIRVDTNTHQLYYPQRPLFGTMLSDS 805

Query: 968  LGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRS 789
            LGK K + HQ+ ML RPE++NGQCAIVAVNVHLGYNQEDS+VMNRASLERGMFR+EHVRS
Sbjct: 806  LGKPKCARHQRGMLSRPEYYNGQCAIVAVNVHLGYNQEDSVVMNRASLERGMFRSEHVRS 865

Query: 788  YKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAA 609
            YKAEV+N EA GKK K +D V+FGKTQSKIGRVD L+DDG PY+GANLQ+GDI+IGK A 
Sbjct: 866  YKAEVDNMEATGKKSKAEDSVNFGKTQSKIGRVDCLDDDGLPYIGANLQSGDIIIGKFAE 925

Query: 608  SGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGF 429
            SG DHS+K+KHTE+GMVQKV+LS+NDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLG+
Sbjct: 926  SGADHSVKMKHTEKGMVQKVLLSANDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGY 985

Query: 428  LESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSV 249
            LESQENFPFT QGIVPDIVINPHAFPSRQTPGQ                KYATPFS  SV
Sbjct: 986  LESQENFPFTVQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGGEKYATPFSALSV 1045

Query: 248  EDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVH 69
            + I  QLH  GFSRWG+ERVY+GRTGE VHSLIFMGPTFYQRL HM+EDKVKFRNTGPVH
Sbjct: 1046 DAILKQLHGRGFSRWGNERVYNGRTGEMVHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVH 1105

Query: 68   PLTRQPVADRKRFGGIKFGEME 3
            PLTRQPVADRKRFGGIKFGEME
Sbjct: 1106 PLTRQPVADRKRFGGIKFGEME 1127


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score = 1510 bits (3909), Expect = 0.0
 Identities = 742/1042 (71%), Positives = 869/1042 (83%), Gaps = 7/1042 (0%)
 Frame = -2

Query: 3107 NDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSV 2928
            NDF+K+GIQ+VFDS GEI VEP +DPSK+G+GDWRYAS++FGKVTLE P  +AGE     
Sbjct: 72   NDFIKNGIQRVFDSFGEIPVEPGYDPSKRGEGDWRYASVRFGKVTLERPRVWAGES---- 127

Query: 2927 DGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGLSRSDKFKTGVEN-FVDKTVLND 2751
            DG +E L   PR+ARLQNMTYSSR+K + H QVYT+ L RSDK+KTG +N +V+K V+ +
Sbjct: 128  DG-KESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFE 186

Query: 2750 YHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVT 2571
             + D++ GR+PVMVKS+LCWMN  E+ DCE+D GGYF+IKGAEKTFIAQEQ+CL RLWV+
Sbjct: 187  DNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQICLKRLWVS 246

Query: 2570 KTPTWTVAYRPVSKRKRVYIKLVP-KVENVMGADKILTVYFYVTEFPIWVLFFALGVSND 2394
              PTW VAYRP+ KRKRVY+KL P K EN  G +K+LTVYF  TE PIW+LFFALG S+D
Sbjct: 247  SNPTWMVAYRPIWKRKRVYVKLEPPKDENNRGGEKVLTVYFSSTEIPIWILFFALGASSD 306

Query: 2393 REVVNLIDLDIEDSAIANILIASIYDADKKYEG----FRKEGNAVKHIEDLMKSVKSPPK 2226
            +EVV+LID +I+D+ I+NIL+ASI++AD++ E     FR++GNA+  ++ L+KS K PP 
Sbjct: 307  KEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRRQGNAISFVDKLVKSCKFPPG 366

Query: 2225 ESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDXXXXXXXXXXXXX 2046
            ES++ECI  YLFPN S  +QKA  L YMVKCLL+AY GRRK DNRDD             
Sbjct: 367  ESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLELAGELL 426

Query: 2045 XXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKK 1866
               L++HI+HAER MVK++QR+L  DR+L+PIE+YLDASIITNGLSRAFSTG WSHP+K+
Sbjct: 427  ERELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPFKR 486

Query: 1865 MERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGEN 1686
            MER+SGVVAT+RRTNPLQ TADMRKTRQQV YTG+VGDARYPHPSHWGK+CFLSTPDGEN
Sbjct: 487  MERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGEN 546

Query: 1685 CGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKIFLDGDWVGICK 1506
            CGLVKNLA  GLVST +L  + L+ +  +CGMEKL DD S+ L GK K+FLDGDWVG+C+
Sbjct: 547  CGLVKNLAITGLVSTEVL--DPLVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDWVGVCE 604

Query: 1505 DSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKG 1326
            D  SFV +LR KRR  E+P QVEIK+D+  GEVRIF DAGRILRPLLVV+NLKK+K  KG
Sbjct: 605  DPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVKTFKG 664

Query: 1325 D-FSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLS 1149
            D F+FQSLLD G++E IG EEEEDC TAWGIK+L     D+PPV+YTHCELD SFLLGLS
Sbjct: 665  DDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGH-DDPPVKYTHCELDMSFLLGLS 723

Query: 1148 CGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADC 969
            CG+IP+ANHDHARRVLYQSEKHSQQAIG+STTNP+IR+DT SHQLYYPQRPLFRT+++DC
Sbjct: 724  CGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMISDC 783

Query: 968  LGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRS 789
            LGK   S+  K ++PRPE+FNGQ AIVAVNVHLGYNQEDSLVMNRASLERGMFR+EH+RS
Sbjct: 784  LGKPGYSEGHKGIVPRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRS 843

Query: 788  YKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAA 609
            YK+EV+N E+  KK+K +D V FGK QSKIGRVDSL+DDGFP++GANLQ GDIVIG+ A 
Sbjct: 844  YKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQNGDIVIGRCAE 903

Query: 608  SGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGF 429
            SGVDHSIKLKHTERGMVQKVV+S+ND+GKNFAVVSLRQVR+PCLGDKFSSMHGQKGVLGF
Sbjct: 904  SGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGF 963

Query: 428  LESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSV 249
            LESQENFPFT QGIVPDIVINPHAFPSRQTPGQ               L++ATPFST SV
Sbjct: 964  LESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLRHATPFSTLSV 1023

Query: 248  EDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVH 69
            + I  QLHR GFSRWG ERVY+GRTGE + SLIFMGPTFYQRL HM+EDKVKFRNTGPVH
Sbjct: 1024 DAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVH 1083

Query: 68   PLTRQPVADRKRFGGIKFGEME 3
            PLTRQPV+DRKRFGGIKFGEME
Sbjct: 1084 PLTRQPVSDRKRFGGIKFGEME 1105


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score = 1491 bits (3859), Expect = 0.0
 Identities = 737/1042 (70%), Positives = 861/1042 (82%), Gaps = 7/1042 (0%)
 Frame = -2

Query: 3107 NDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSV 2928
            NDF+K+GIQ+VFDS GEI VEP +DPSK+G+GDWRYAS++FGKVTLE P  +AGE     
Sbjct: 108  NDFIKNGIQRVFDSFGEIPVEPGYDPSKRGEGDWRYASVRFGKVTLERPRVWAGES---- 163

Query: 2927 DGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGLSRSDKFKTGVEN-FVDKTVLND 2751
            DG +E L   PR+ARLQNMTYSSR+K + H QVYT+ L RSDK+KTG +N +V+K V+ +
Sbjct: 164  DG-KESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFE 222

Query: 2750 YHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVT 2571
             + D++ GR+PVMVKS+LCWMN  E+ DCE+D GGYF+IKGAEKTFIAQEQ+CL RLWV+
Sbjct: 223  DNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQICLKRLWVS 282

Query: 2570 KTPTWTVAYRPVSKRKRVYIKLVP-KVENVMGADKILTVYFYVTEFPIWVLFFALGVSND 2394
              PTW VAYRP+ KRKRVY+KL P K EN  G +K+LTVYF  TE PIW+LFFALG S+D
Sbjct: 283  SNPTWMVAYRPIWKRKRVYVKLEPPKDENNRGGEKVLTVYFSSTEIPIWILFFALGASSD 342

Query: 2393 REVVNLIDLDIEDSAIANILIASIYDADKKYEG----FRKEGNAVKHIEDLMKSVKSPPK 2226
            +EVV+LID +I+D+ I+NIL+ASI++AD++ E     FR++GNA+  ++ L+KS K PP 
Sbjct: 343  KEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRRQGNAISFVDKLVKSCKFPPG 402

Query: 2225 ESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDXXXXXXXXXXXXX 2046
            ES++ECI  YLFPN S  +QKA  L YMVKCLL+AY GRRK DNRDD             
Sbjct: 403  ESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLELAGELL 462

Query: 2045 XXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKK 1866
               L++HI+HAER MVK++QR+L  DR+L+PIE+YLDASIITNGLSRAFSTG WSHP+K+
Sbjct: 463  ERELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPFKR 522

Query: 1865 MERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGEN 1686
            MER+SGVVAT+RRTNPLQ TADMRKTRQQV YTG+VGDARYPHPSHWGK+CFLSTPDGEN
Sbjct: 523  MERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGEN 582

Query: 1685 CGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKIFLDGDWVGICK 1506
            CGLVKNLA  GLVST +L  + L+ +  +CGMEKL DD S+ L GK K+FLDGDWVG+C+
Sbjct: 583  CGLVKNLAITGLVSTEVL--DPLVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDWVGVCE 640

Query: 1505 DSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKG 1326
            D  SFV +LR KRR  E+P QVEIK+D+  GEVRIF DAGRILRPLLVV+NLKK+K  KG
Sbjct: 641  DPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVKTFKG 700

Query: 1325 D-FSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLS 1149
            D F+FQSLLD G++E IG EEEEDC TAWGIK+L     D+PPV+YTHCELD SFLLGLS
Sbjct: 701  DDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGH-DDPPVKYTHCELDMSFLLGLS 759

Query: 1148 CGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADC 969
            CG+IP+ANHDHARRVLYQSEKHSQQAIG+STTNP+IR+DT SHQLYYPQRPLFRT+++D 
Sbjct: 760  CGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMISD- 818

Query: 968  LGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRS 789
                         LPRPE+FNGQ AIVAVNVHLGYNQEDSLVMNRASLERGMFR+EH+RS
Sbjct: 819  -------------LPRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRS 865

Query: 788  YKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAA 609
            YK+EV+N E+  KK+K +D V FGK QSKIGRVDSL+DDGFP++GANLQ GDIVIG+ A 
Sbjct: 866  YKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQNGDIVIGRCAE 925

Query: 608  SGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGF 429
            SGVDHSIKLKHTERGMVQKVV+S+ND+GKNFAVVSLRQVR+PCLGDKFSSMHGQKGVLGF
Sbjct: 926  SGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGF 985

Query: 428  LESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSV 249
            LESQENFPFT QGIVPDIVINPHAFPSRQTPGQ               L++ATPFST SV
Sbjct: 986  LESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLRHATPFSTLSV 1045

Query: 248  EDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVH 69
            + I  QLHR GFSRWG ERVY+GRTGE + SLIFMGPTFYQRL HM+EDKVKFRNTGPVH
Sbjct: 1046 DAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVH 1105

Query: 68   PLTRQPVADRKRFGGIKFGEME 3
            PLTRQPV+DRKRFGGIKFGEME
Sbjct: 1106 PLTRQPVSDRKRFGGIKFGEME 1127


>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
            gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
            RNA polymerases IV and V subunit 2-like [Citrus sinensis]
            gi|557545145|gb|ESR56123.1| hypothetical protein
            CICLE_v10018562mg [Citrus clementina]
          Length = 1198

 Score = 1449 bits (3750), Expect = 0.0
 Identities = 711/1044 (68%), Positives = 841/1044 (80%), Gaps = 9/1044 (0%)
 Frame = -2

Query: 3107 NDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSV 2928
            N+F+K+G+Q+ FDS GE  VEP +DPSKKG+G+WRYAS++FG+VTL+ P+FFAG      
Sbjct: 73   NEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAG------ 126

Query: 2927 DGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDY 2748
            +G  EH  + PR+ARLQNMTYSSR+KV+   QVYT+    SDKFKTG E ++ K VL+D 
Sbjct: 127  NGGDEH-DMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDE 185

Query: 2747 HSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTK 2568
             +D+I GR+PVMVKSDLCWM   EK DC+FD GGYF+IKGAEK F+AQEQ+CL RLWV+ 
Sbjct: 186  ATDIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSN 245

Query: 2567 TPTWTVAYRPVSKRKRVYIKLVP--KVENVMGADKILTVYFYVTEFPIWVLFFALGVSND 2394
            +  WTVAY+  +KR R+ ++LV   K E++ G +K+L+VYF  TE PIW+LFFALGVS+D
Sbjct: 246  SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSD 305

Query: 2393 REVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVE 2214
            +E+VNLID   ED +I NIL ASI+DAD K + FRK  NA+K+++ L+K    PP ES E
Sbjct: 306  KEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE 365

Query: 2213 ECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDXXXXXXXXXXXXXXXXL 2034
            EC+  YLFP+L   +QKA  L YMVKCLL+AY GRRK DNRDD                L
Sbjct: 366  ECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLEREL 425

Query: 2033 KIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERV 1854
            K+HI HA + M K++QRDL  DR ++PIE+YLDASI+TNGLSRAFSTGAWSHP+K+ ER+
Sbjct: 426  KVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI 485

Query: 1853 SGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLV 1674
            SG+VA + R NPLQ   D+R+TRQQV YTG+VGDARYPHPSHWGKICFLSTPDGENCGLV
Sbjct: 486  SGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLV 545

Query: 1673 KNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSS 1494
            KNL   GLVST+IL  E + ++    GMEKL DD S  L GK+K+F+DGDW+G+CKDS S
Sbjct: 546  KNLGVTGLVSTSIL--EPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLS 603

Query: 1493 FVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKG-DFS 1317
            FVS+LRRKRRR E+P QVEIK+D+   EVRIF+DAGRILRPLLVV+N+ KIK L+G +++
Sbjct: 604  FVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYT 663

Query: 1316 FQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLI 1137
            FQ+LLD G+IE +G EEEEDC TAWGIK+L     D  P+++THCELD SFLLGLSCG+I
Sbjct: 664  FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGII 723

Query: 1136 PFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKS 957
            PFANHDHARRVLYQS+KHS QAIG+ TTNPSIR+DT SHQL+YPQRPLFRT+++DCLGK 
Sbjct: 724  PFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP 783

Query: 956  KLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAE 777
                +   +LPRPE +NGQ AIVAVNVHLGYNQEDSLVMNRASLERGMFR+EH+RSYKAE
Sbjct: 784  GYGHNH--ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE 841

Query: 776  VENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVD 597
            V+N E   K++  DD+V+FGK QSKIGRVDSL+DDGFP++GANLQ GDIVIGK+A SG D
Sbjct: 842  VDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQCGDIVIGKYADSGAD 901

Query: 596  HSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 417
            HSIKLKHTERGMVQKVVLSSND+GKNF+VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ
Sbjct: 902  HSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 961

Query: 416  ENFPFTKQGIVPDIVINPHAFPSRQTPGQ------XXXXXXXXXXXXXXXLKYATPFSTP 255
            ENFPFT QGIVPDIVINPHAFPSRQTPGQ                      +YATPF+TP
Sbjct: 962  ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP 1021

Query: 254  SVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGP 75
            SV+ IT QLHR GFS+WG ER+YDGRTGE V SLIF+GPTFYQRL HMSEDKVKFRNTGP
Sbjct: 1022 SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGP 1081

Query: 74   VHPLTRQPVADRKRFGGIKFGEME 3
            VHPLTRQPVADRKRFGGIKFGEME
Sbjct: 1082 VHPLTRQPVADRKRFGGIKFGEME 1105


>gb|EOY29336.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
          Length = 1184

 Score = 1435 bits (3715), Expect = 0.0
 Identities = 709/1038 (68%), Positives = 832/1038 (80%), Gaps = 3/1038 (0%)
 Frame = -2

Query: 3107 NDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSV 2928
            N F+K+G+Q  FDS GE  +   +DPSKKG+GDWR+A ++FGKVT+E PTF+A      V
Sbjct: 63   NAFIKYGLQNTFDSFGEFLIHSGYDPSKKGEGDWRHARVRFGKVTVERPTFWA------V 116

Query: 2927 DGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDY 2748
             G  E L + PR+ARLQNMTYSSR+KV   LQVYT    +SDKFKTG E FV++ V+   
Sbjct: 117  SGGNE-LNMLPRHARLQNMTYSSRMKVNVDLQVYTAKSVKSDKFKTGREEFVEEEVVYQD 175

Query: 2747 HSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTK 2568
            + D+I GR+PVMV+SDLCWMN  EK DC+FD GGYF+IKG EK FIAQEQ+ + RLW++ 
Sbjct: 176  NRDIIIGRIPVMVRSDLCWMNEVEKADCDFDHGGYFLIKGTEKIFIAQEQISMKRLWISN 235

Query: 2567 TPTWTVAYRPVSKRKRVYIKLVP--KVENVMGADKILTVYFYVTEFPIWVLFFALGVSND 2394
            +  WT+AYR   KR R+ I+LV   KVE + G +K+LTVYF  TE P+WVLFFALGVS+D
Sbjct: 236  SQGWTIAYRSEVKRNRLIIRLVENSKVEYIKGGEKVLTVYFLSTEIPVWVLFFALGVSSD 295

Query: 2393 REVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVE 2214
            +EVVNLID +  DS+I NIL ASI +AD K   F +  NA+ ++  L+K  + PP+E +E
Sbjct: 296  KEVVNLIDYESNDSSITNILFASIRNADGKCYKFCQGRNAIDYVGKLVKDTRFPPEEGIE 355

Query: 2213 ECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDXXXXXXXXXXXXXXXXL 2034
            EC+  YLFP L S +QKA  L YMVKCLL+AY GR K DNRDD                L
Sbjct: 356  ECLSTYLFPTLRSFKQKARFLGYMVKCLLQAYTGRLKCDNRDDFRNKRLELAGELLEREL 415

Query: 2033 KIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERV 1854
            K+HI HA R M K++QRDL  DR ++PIEHYLDASI+TNGLSRAFSTGAWSHPYK+MER+
Sbjct: 416  KVHIAHARRRMAKTLQRDLYADRTVRPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERI 475

Query: 1853 SGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLV 1674
            SGVVA + R NPLQ   D+RKTRQQV YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLV
Sbjct: 476  SGVVANLGRANPLQTMVDLRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLV 535

Query: 1673 KNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSS 1494
            KNLA+ GLVST I+  ES++ +  + GME+L +D  S LDGK K+FL+G+WVG+C+DS S
Sbjct: 536  KNLATTGLVSTNIM--ESIVDKLFDSGMEELVNDTCSSLDGKDKVFLNGEWVGVCEDSLS 593

Query: 1493 FVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD-FS 1317
            F +++RRKRR  E P+QVEIK+D+H GEVRIF D GRILRPLLVV NL +IK  KG+ ++
Sbjct: 594  FAAEVRRKRRSKEFPHQVEIKRDEHKGEVRIFSDGGRILRPLLVVDNLNRIKAFKGENYT 653

Query: 1316 FQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLI 1137
            FQ+LL+ G+IE +G EEEEDC+TAW IK+L T      PV+YTHCELD SFLLGLSCG+I
Sbjct: 654  FQALLEGGIIELVGTEEEEDCRTAWSIKYLLTDVEGKQPVKYTHCELDMSFLLGLSCGII 713

Query: 1136 PFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKS 957
            PFANHDHARRVLYQ++KHSQQAIG+STTNP+IR+DT SHQLYYPQRPLFRT+ +DCLGK 
Sbjct: 714  PFANHDHARRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMTSDCLGKL 773

Query: 956  KLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAE 777
                 QK +LP+PE +NGQ AIVAVNVHLGYNQEDSLVMNR+SLERGMFR+EHVRSYKAE
Sbjct: 774  GHPLGQKGVLPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRSSLERGMFRSEHVRSYKAE 833

Query: 776  VENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVD 597
            V+N E   K++K +D+V+FGK QSKIGRVDSL+DDGFPYVGANLQ GDIVIG+ A SG D
Sbjct: 834  VDNKEIQDKRRKSEDIVNFGKIQSKIGRVDSLDDDGFPYVGANLQCGDIVIGRCAESGAD 893

Query: 596  HSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 417
            HSIKLKHTERGMVQKVVLSSND+GKN+AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ
Sbjct: 894  HSIKLKHTERGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 953

Query: 416  ENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDIT 237
            ENFPFT QGIVPDIVINPHAFPSRQTPGQ               +KYATPFST SV+ IT
Sbjct: 954  ENFPFTTQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSMKYATPFSTISVDAIT 1013

Query: 236  AQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTR 57
             QLHR GFSRWG+ERVY+GRTGE V SLIFMGPTFYQRL HM+EDKVKFRNTGPVHPLTR
Sbjct: 1014 EQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTR 1073

Query: 56   QPVADRKRFGGIKFGEME 3
            QPVADRKR+GGIKFGEME
Sbjct: 1074 QPVADRKRYGGIKFGEME 1091


>gb|EMJ26641.1| hypothetical protein PRUPE_ppa000410mg [Prunus persica]
          Length = 1200

 Score = 1422 bits (3681), Expect = 0.0
 Identities = 708/1042 (67%), Positives = 836/1042 (80%), Gaps = 7/1042 (0%)
 Frame = -2

Query: 3107 NDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSV 2928
            NDF+K+GIQ+VFDS GEI VEP +DPSKKG+ +WRYAS+KFGKVTL  P+F+ G      
Sbjct: 77   NDFIKNGIQRVFDSFGEIIVEPGYDPSKKGESEWRYASVKFGKVTLGMPSFWGGS----- 131

Query: 2927 DGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDY 2748
            D  +E+ K+ PR+ARLQNM+Y+S++KV   ++VYT+ L  SDKFKTG   ++DK +L+  
Sbjct: 132  DDEKEY-KMLPRHARLQNMSYASKMKVNITVEVYTQKLVSSDKFKTGKSQYLDKQILSTD 190

Query: 2747 HSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTK 2568
              D+I G +PVMVKSDLCWM   EK DC+FD GGYF+IKGAEKTFIAQEQ CL RL +T 
Sbjct: 191  TRDIIIGSVPVMVKSDLCWMKDFEKGDCDFDHGGYFIIKGAEKTFIAQEQSCLKRLLITN 250

Query: 2567 TPTWTVAYRPVSKRKRVYIKLV--PKVENVMGADKILTVYFYVTEFPIWVLFFALGVSND 2394
                TVAYR   KR R+ I+LV   K+EN+ G +K+LTVYF  TE P+W+ FFALGVS+D
Sbjct: 251  NQGLTVAYRSEVKRHRLIIRLVGISKLENIEGVEKVLTVYFMSTEIPVWIWFFALGVSSD 310

Query: 2393 REVVNLIDLDIEDSAIANILIASIYDADKKYE----GFRKEGNAVKHIEDLMKSVKSPPK 2226
            REV+NLID D ED++I+NIL ASI DADK  +    GFR+  NA+K+++++++    PP 
Sbjct: 311  REVMNLIDYDSEDASISNILFASIRDADKLNDKVDGGFRRGKNALKYVDEVIRKTAFPPG 370

Query: 2225 ESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDXXXXXXXXXXXXX 2046
            ES+EECI  YLFPNL   +QKA  L YMVK LL+AY GRRK DNRDD             
Sbjct: 371  ESMEECISLYLFPNLKGLKQKARFLGYMVKSLLQAYAGRRKCDNRDDFRNKRLDLAGELL 430

Query: 2045 XXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKK 1866
               LK HI HA R M K++QRDL  DR ++PIEHYLDASI+TNG+SRAFSTGAW HP+K+
Sbjct: 431  ERELKAHIGHARRRMAKALQRDLYGDRAVRPIEHYLDASIVTNGISRAFSTGAWCHPFKR 490

Query: 1865 MERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGEN 1686
            MER+SGVVAT+ R NPLQ   DMRKTRQQV YTG+VGDARYPHPSHWGK+CFLSTPDGEN
Sbjct: 491  MERMSGVVATVGRANPLQTMVDMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGEN 550

Query: 1685 CGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKIFLDGDWVGICK 1506
            CGLVKNLA+ GLVST +L  ESL+ +   CGMEKL DD  + L GK K+FL+GDWVG+C+
Sbjct: 551  CGLVKNLATTGLVSTNVL--ESLIPQLLTCGMEKLVDDTFTSLRGKDKVFLNGDWVGVCE 608

Query: 1505 DSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKG 1326
            DS SFV +LRR RRR ++P+QVEIK+D H GEVRIF DAGRILRPLLVV+NL K+K  KG
Sbjct: 609  DSLSFVLELRRMRRRKKLPHQVEIKRDVHQGEVRIFSDAGRILRPLLVVENLNKVKASKG 668

Query: 1325 D-FSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLS 1149
               SFQ  LD+G+IE IG EEEEDC TAWGIK+LF  +      ++THCELD SFLLGLS
Sbjct: 669  GKSSFQYFLDNGIIELIGAEEEEDCSTAWGIKYLFMEDKGKSATKFTHCELDMSFLLGLS 728

Query: 1148 CGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADC 969
            CG+IP+ANHDHARRVLYQ++KHSQQAIG+STTNP++R+DT SHQL+YPQRPLF+T+ +DC
Sbjct: 729  CGIIPYANHDHARRVLYQAQKHSQQAIGFSTTNPNLRVDTLSHQLHYPQRPLFQTMTSDC 788

Query: 968  LGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRS 789
            LGK     H + ++P+PE++NGQ AIVAVNVHLG+NQEDS+VMNRASLERGMFR+EH+RS
Sbjct: 789  LGKP--GRHNR-IVPKPEYYNGQNAIVAVNVHLGFNQEDSIVMNRASLERGMFRSEHIRS 845

Query: 788  YKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAA 609
            YKAEV+N E+  K++K DD V+FGK QSK GRVDSL+DDGFPYVGANLQ+GDI+IG+ + 
Sbjct: 846  YKAEVDNKESLDKRRKPDDCVNFGKMQSKFGRVDSLDDDGFPYVGANLQSGDIIIGRCSE 905

Query: 608  SGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGF 429
            SG DHSIKLKHTERGMVQKV+LSSND+GKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGF
Sbjct: 906  SGADHSIKLKHTERGMVQKVLLSSNDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGF 965

Query: 428  LESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSV 249
            LESQENFPFT QG+VPDIVINPHAFPSRQTPGQ                +YATPFST SV
Sbjct: 966  LESQENFPFTIQGVVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSKRYATPFSTLSV 1025

Query: 248  EDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVH 69
            +DIT QLH  GFSRWG+ERVY+G TG  V SLIFMGPTFYQRL HMSEDKVKFRNTGPVH
Sbjct: 1026 DDITDQLHSAGFSRWGNERVYNGATGAMVRSLIFMGPTFYQRLIHMSEDKVKFRNTGPVH 1085

Query: 68   PLTRQPVADRKRFGGIKFGEME 3
            PLTRQPVADRKRFGGIKFGEME
Sbjct: 1086 PLTRQPVADRKRFGGIKFGEME 1107


>ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Fragaria
            vesca subsp. vesca]
          Length = 1201

 Score = 1409 bits (3646), Expect = 0.0
 Identities = 703/1038 (67%), Positives = 823/1038 (79%), Gaps = 3/1038 (0%)
 Frame = -2

Query: 3107 NDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSV 2928
            NDFV++GIQ+VFDS GEI VEP+FDPSKKG+ DWR+A++KFGKVTL  P F+ G      
Sbjct: 80   NDFVENGIQRVFDSFGEIVVEPNFDPSKKGNADWRFAAIKFGKVTLSKPCFWGGS----- 134

Query: 2927 DGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDY 2748
            D  +E+  L PR+ARLQNMTYS+R+ V   +QVYT+ L  SDKFKTG E  ++KT L+  
Sbjct: 135  DSDKEYNML-PRHARLQNMTYSARMSVNITVQVYTQNLVESDKFKTGTEQLLEKTTLSTD 193

Query: 2747 HSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTK 2568
              D+I GR+PVMVKS+LCWM   EK DCEFDQGGYF+I GAEKTFIAQEQ CL RL +T 
Sbjct: 194  SRDIIIGRIPVMVKSNLCWMKGVEKGDCEFDQGGYFIINGAEKTFIAQEQSCLKRLLITN 253

Query: 2567 TPTWTVAYRPVSKRKRVYIKL--VPKVENVMGADKILTVYFYVTEFPIWVLFFALGVSND 2394
            +   TVAYR   KR R+ I+L  + K+ENV G +K+L+VYF  TE P+W+ FFALGVS+D
Sbjct: 254  SQGLTVAYRSEVKRHRLIIRLSGISKLENVEGVEKVLSVYFMSTEIPVWIWFFALGVSSD 313

Query: 2393 REVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVE 2214
            +EV++LID  IED++I+NIL ASI DAD++ + FR+  NA++++E+ +KS   PP ESVE
Sbjct: 314  KEVIDLIDYGIEDASISNILFASIRDADERKDDFRRGNNALRYVENAIKSTTFPPGESVE 373

Query: 2213 ECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDXXXXXXXXXXXXXXXXL 2034
            +CI  YLFPN+   +QKA  L YMVKCLL+   G RK DNRDD                L
Sbjct: 374  DCISMYLFPNMRGLKQKARFLGYMVKCLLQTSIGLRKCDNRDDFRNKRLELAGELLEREL 433

Query: 2033 KIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERV 1854
            K H+ HA R M K++QRDL  D  ++P+EHYLDASI+TNG+SRAFSTGAW HP+K+MER+
Sbjct: 434  KAHVSHARRKMAKALQRDLGGDHVVRPVEHYLDASIVTNGVSRAFSTGAWCHPFKRMERI 493

Query: 1853 SGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLV 1674
            SGVVA I R NPLQ   DMRKTRQQV YTG+ GDARYPHPSHWGK+CFLSTPDGENCGLV
Sbjct: 494  SGVVANIGRANPLQTMIDMRKTRQQVQYTGKAGDARYPHPSHWGKVCFLSTPDGENCGLV 553

Query: 1673 KNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSS 1494
            KNLA+  LVS  I   E +L +  +CG+E+L DD  + L GK+K+FL+GDWVGIC DS  
Sbjct: 554  KNLATTALVSINI--SEPILPKLFKCGIEELVDDTYTSLAGKHKVFLNGDWVGICVDSHG 611

Query: 1493 FVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD-FS 1317
            FV+KLRR RR  ++P+QVEIK+D+H GEVRIF DAGRILRPLLVVQ LKKIK  KG+  +
Sbjct: 612  FVTKLRRLRRSKKLPHQVEIKRDEHKGEVRIFSDAGRILRPLLVVQGLKKIKAAKGEKHT 671

Query: 1316 FQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLI 1137
            FQ  LD G+IEFIG EEEEDC+TAW IK+LF  E     V+YTHCELD SFLLGLSCG+I
Sbjct: 672  FQDFLDKGIIEFIGAEEEEDCRTAWAIKYLFMEE-QGSVVKYTHCELDMSFLLGLSCGII 730

Query: 1136 PFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKS 957
            PFANHDHARRVLYQS+KHSQQAIGYSTTNP++R+DT SH L+YPQRPLFRT++AD LGK 
Sbjct: 731  PFANHDHARRVLYQSQKHSQQAIGYSTTNPNLRVDTLSHNLHYPQRPLFRTMIADSLGKP 790

Query: 956  KLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAE 777
                     +P+PE+FNGQ AIVAVNVHLGYNQEDS+VMNRASLERGMFR+EH+RSYKAE
Sbjct: 791  GYPVGHNGFMPKPEYFNGQNAIVAVNVHLGYNQEDSIVMNRASLERGMFRSEHIRSYKAE 850

Query: 776  VENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVD 597
            VEN  +  K++K D+ V+FGK QSK GRVD+L+DDGFP VGA+LQ+GDI+IG+ + SG D
Sbjct: 851  VENKLSLEKRRKPDECVNFGKIQSKFGRVDNLDDDGFPCVGASLQSGDIIIGRCSESGTD 910

Query: 596  HSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 417
            HSIKLKHTERGMVQKVVLSSND GKNFAVVSLRQVRSP LGDKFSSMHGQKGVLGFLE Q
Sbjct: 911  HSIKLKHTERGMVQKVVLSSNDAGKNFAVVSLRQVRSPSLGDKFSSMHGQKGVLGFLEYQ 970

Query: 416  ENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDIT 237
            ENFPFT QGIVPDIVINPHAFPSRQTPGQ                +YATPFST SV+DIT
Sbjct: 971  ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSKRYATPFSTLSVDDIT 1030

Query: 236  AQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTR 57
             QLHR GFSRWG+ERVY+GRTGE V  LIFMGPTFYQRL HMSEDKVKFRNTGPVHPLTR
Sbjct: 1031 DQLHRAGFSRWGNERVYNGRTGEMVRQLIFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTR 1090

Query: 56   QPVADRKRFGGIKFGEME 3
            QPVADRKRFGGIKFGEME
Sbjct: 1091 QPVADRKRFGGIKFGEME 1108


>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1181

 Score = 1400 bits (3623), Expect = 0.0
 Identities = 688/1038 (66%), Positives = 822/1038 (79%), Gaps = 3/1038 (0%)
 Frame = -2

Query: 3107 NDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSV 2928
            N F+  G+Q+VFDS GE+ VEP +D SK+ DG+WR AS++FGKVTL+ P+F+ G    + 
Sbjct: 70   NAFINSGLQRVFDSFGEVAVEPGYDSSKQKDGEWRRASVRFGKVTLDRPSFWGGTSSDA- 128

Query: 2927 DGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDY 2748
                EH  + PR+ARLQNMTYS+R+K+  ++QVYT+ + RSDKFKTG++  V K V++  
Sbjct: 129  ----EH-NMFPRHARLQNMTYSARMKIHVNVQVYTQTVGRSDKFKTGIDKVVQKNVVHTE 183

Query: 2747 HSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTK 2568
            + ++I GR+PVMVKSDLCW+ + EK DC+FD GGYF+IKGAEK FIAQEQ+C+ RLW++ 
Sbjct: 184  NREIIIGRIPVMVKSDLCWLTTVEKGDCDFDHGGYFLIKGAEKVFIAQEQICMKRLWISN 243

Query: 2567 TPTWTVAYRPVSKRKRVYIKLVP--KVENVMGADKILTVYFYVTEFPIWVLFFALGVSND 2394
            +  WTV+Y+   KR R+ ++LV   K+E + G  K L VYF  TE P+W+LFFALGV +D
Sbjct: 244  SQGWTVSYKSEVKRNRLIVRLVELSKLEYIKGEKKGLCVYFLSTEIPLWILFFALGVRSD 303

Query: 2393 REVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVE 2214
            +EV++LID    D++I NI  ASI+DAD+K E FR+E  A+ +++ L+K  + PPKES+E
Sbjct: 304  KEVIDLIDYASNDASIVNIFFASIHDADEKCEHFRREDRALDYVDKLLKKTRFPPKESIE 363

Query: 2213 ECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDXXXXXXXXXXXXXXXXL 2034
            + I  YLFP L+S R KA  L YMVKCLLEAY G RK DNRD                 L
Sbjct: 364  DAISAYLFPRLNSRRHKARFLGYMVKCLLEAYTGHRKCDNRDSFRNKRFELASELLEREL 423

Query: 2033 KIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERV 1854
            K+H+ HA R M K++QRDL  DR++ PIEHYLDASI+TNGL+RAFSTGAW HP+K MERV
Sbjct: 424  KVHVSHALRRMTKALQRDLYGDRDVHPIEHYLDASIVTNGLTRAFSTGAWCHPFKWMERV 483

Query: 1853 SGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLV 1674
            SGVV  + R NPLQ   D+RKTRQQV YTG+VGDARYPHPSHWG++CFLSTPDGENCGLV
Sbjct: 484  SGVVGNLGRANPLQTMIDLRKTRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLV 543

Query: 1673 KNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSS 1494
            KNLA  G+VST I   ESL+ +  + GMEKL DD  + LDGK+K+FL+G+WVG+C+DS  
Sbjct: 544  KNLAVTGVVSTNI--SESLVDKLFDSGMEKLVDDTYTKLDGKHKVFLNGEWVGVCEDSCL 601

Query: 1493 FVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKG-DFS 1317
            FV +LR  RRR E+PYQVEIK+D+   EVRIF DAGRILRPLLVV+NL KIK  KG ++ 
Sbjct: 602  FVGELRSMRRRRELPYQVEIKRDEQQREVRIFSDAGRILRPLLVVENLDKIKAFKGGNYI 661

Query: 1316 FQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLI 1137
            F SLLD G+IEFIG EEEEDC TAWGIK L        P++Y+HCELD SFLLGLSCG+I
Sbjct: 662  FTSLLDKGIIEFIGTEEEEDCCTAWGIKFLLADIEGKQPMKYSHCELDMSFLLGLSCGII 721

Query: 1136 PFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKS 957
            PFANHDHARRVLYQ++KHSQQAIG+STTNP+IR+DT SHQL+YPQRPLFRT+++DCL   
Sbjct: 722  PFANHDHARRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQLHYPQRPLFRTMISDCL--- 778

Query: 956  KLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAE 777
                    +LP+PE FNGQ AIVAVNVHLGYNQEDSLVMNRASLERGMFR+EH+RSYKAE
Sbjct: 779  --------VLPKPELFNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE 830

Query: 776  VENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVD 597
            V+N E   K++K +D ++FGK QSKIGRVDSL+DDGFP++GAN+Q+GDIVIGK A SG D
Sbjct: 831  VDNKELTDKRRKSEDSITFGKIQSKIGRVDSLDDDGFPFIGANMQSGDIVIGKCAESGAD 890

Query: 596  HSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 417
            HS+KLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ
Sbjct: 891  HSVKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 950

Query: 416  ENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDIT 237
            ENFPFT QG+VPDIVINPHAFPSRQTPGQ                +YATPFST SV+DI 
Sbjct: 951  ENFPFTIQGVVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSKRYATPFSTLSVDDII 1010

Query: 236  AQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTR 57
             QLHR  FSRWG+ERVY+GRTGE V SLIFMGPTFYQRL HM+EDKVKFRNTGPVHPLTR
Sbjct: 1011 DQLHRAKFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLVHMAEDKVKFRNTGPVHPLTR 1070

Query: 56   QPVADRKRFGGIKFGEME 3
            QPVADRKRFGGIKFGEME
Sbjct: 1071 QPVADRKRFGGIKFGEME 1088


>ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cicer
            arietinum]
          Length = 1199

 Score = 1394 bits (3609), Expect = 0.0
 Identities = 698/1039 (67%), Positives = 819/1039 (78%), Gaps = 4/1039 (0%)
 Frame = -2

Query: 3107 NDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGD-WRYASLKFGKVTLEHPTFFAGEKFSS 2931
            N F   G+Q  FDS G++TV P FDPSKKGD + +RYAS+KFGKVTL+ P F+ GE    
Sbjct: 78   NQFATSGLQNTFDSFGDLTVTPGFDPSKKGDNEHYRYASVKFGKVTLDRPMFWCGE---- 133

Query: 2930 VDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLND 2751
              G  + +K+ PR+ARLQ MTY+S++KV   +QVY     RSDKFKTG E ++D+ ++ D
Sbjct: 134  --GNTQEMKMLPRHARLQRMTYASKMKVNVQVQVYIPKKVRSDKFKTGKEEYIDREIIMD 191

Query: 2750 YHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVT 2571
             + ++  GRLPVMVKSDLCWMN  EK DCEFD GGYF+IKGAEK FIAQEQ+ L RLWVT
Sbjct: 192  ENREITIGRLPVMVKSDLCWMNGVEKGDCEFDHGGYFLIKGAEKIFIAQEQIFLKRLWVT 251

Query: 2570 KTPTWTVAYRPVSKRKRVYIKLVPK--VENVMGADKILTVYFYVTEFPIWVLFFALGVSN 2397
              P W VAY+   KR R+ +KLV    VE +   +K+LTVYF   E P+W+LFFALGV++
Sbjct: 252  NVPYWAVAYKSQMKRNRMVVKLVENTTVEGIKNGEKVLTVYFLSVEIPVWLLFFALGVTS 311

Query: 2396 DREVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESV 2217
            D+++V+LID    D  I NIL ASI +AD+K E FR+  NA+ +IE+ +K V+ PP ES+
Sbjct: 312  DKQIVDLIDYGEGDGRIQNILFASIREADEKCEQFRRGKNALLYIEERVKGVQFPPPESI 371

Query: 2216 EECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDXXXXXXXXXXXXXXXX 2037
            +EC+  Y+FPN+    +KA  LAYMVK LL AY GRRK DNRDD                
Sbjct: 372  DECLNMYVFPNIKGLNRKARYLAYMVKVLLLAYTGRRKTDNRDDFRNKRLELAGELLERE 431

Query: 2036 LKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMER 1857
            LK+HI HA + M K++QRDL  DR++  IEHYLDASIITNGL RAFSTGAW+HPYK+MER
Sbjct: 432  LKVHIAHARKRMAKALQRDLYGDRDVHQIEHYLDASIITNGLQRAFSTGAWTHPYKRMER 491

Query: 1856 VSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGL 1677
            +SGVVAT+ RTNPLQ  A++R+TRQQV YTG+VGDARYPHPSHWGK+CFLSTPDGENCGL
Sbjct: 492  ISGVVATLGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGL 551

Query: 1676 VKNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSS 1497
            VKN+A  GLVST +   ES+L +   CGME+L DD +++L  K K+FL+GDWVG+C DS+
Sbjct: 552  VKNMAVTGLVSTNVT--ESILPQLFACGMEELVDDTTAVLGNKDKVFLNGDWVGVCSDSA 609

Query: 1496 SFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD-F 1320
            SFV++LR +RR+ E+P+QVEIK+D    EVRI  DAGRILRPLLVV NL KIK  K D  
Sbjct: 610  SFVAELRNRRRKNELPHQVEIKRDPSQEEVRILSDAGRILRPLLVVSNLLKIKGSKSDPK 669

Query: 1319 SFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGL 1140
            SFQSLLD+G+IE IGPEEEEDC+TAWG+ +LF  E     V+YTHCELD SFLLGLSC L
Sbjct: 670  SFQSLLDNGLIELIGPEEEEDCKTAWGVPYLFGKE-GKSSVKYTHCELDMSFLLGLSCSL 728

Query: 1139 IPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGK 960
            +PFANHDHARRVLYQS+KHS QAIG+STTNP IR+D  SHQL+YPQ+PLF+T+ +DCLGK
Sbjct: 729  VPFANHDHARRVLYQSQKHSSQAIGFSTTNPDIRVDALSHQLFYPQKPLFQTMTSDCLGK 788

Query: 959  SKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKA 780
                   K +LP+ EF+NGQ AIVAVNVHLGYNQEDSLVMNRASL+RGMFR+EH+RSYKA
Sbjct: 789  PGYLGPSK-LLPKSEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKA 847

Query: 779  EVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGV 600
            E EN E+  KK+K +D+V+FGK QSKIGRVDSL+DDGFP+VGANLQ GDI+IG+ A SG 
Sbjct: 848  ENENKESTEKKRKPEDIVNFGKIQSKIGRVDSLDDDGFPFVGANLQIGDIIIGRCADSGA 907

Query: 599  DHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLES 420
            DHSIKLKHTERG VQKVVLSSNDEGKNFAVVSLRQVRSP LGDKFSSMHGQKGVLGFLES
Sbjct: 908  DHSIKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLES 967

Query: 419  QENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDI 240
            QENFPFTKQGIVPDIVINPHAFPSRQTPGQ               L+ ATPFST SVE I
Sbjct: 968  QENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACVGSLRNATPFSTSSVEAI 1027

Query: 239  TAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPLT 60
            T QLHR GFSRWG+ERVY+GRTGE V SLIFMGPTFYQRL HMSEDKVKFRNTGPVHPLT
Sbjct: 1028 TDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLT 1087

Query: 59   RQPVADRKRFGGIKFGEME 3
            RQPVADRKRFGGIKFGEME
Sbjct: 1088 RQPVADRKRFGGIKFGEME 1106


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score = 1392 bits (3602), Expect = 0.0
 Identities = 691/1038 (66%), Positives = 822/1038 (79%), Gaps = 3/1038 (0%)
 Frame = -2

Query: 3107 NDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSV 2928
            NDF+ +GIQ+ FDS GE+ VEP +DPSKKG+ +WRYAS+KFGKV LE PTF++G      
Sbjct: 85   NDFINNGIQKAFDSFGELVVEPGYDPSKKGENEWRYASVKFGKVALEKPTFWSGA----- 139

Query: 2927 DGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDY 2748
                EH K+ PR+ARLQNMTYSS++KV   ++VYT+ + RSDKFKTG + +VDK VLN  
Sbjct: 140  ---DEH-KMLPRHARLQNMTYSSKMKVNVSVEVYTRKVVRSDKFKTGKDQYVDKEVLNTD 195

Query: 2747 HSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTK 2568
            + ++  G LPVMVKSDLCWM ++EK DC+FD GGYF+IKGAEK FIAQEQ+CL RLW++ 
Sbjct: 196  NRNITIGSLPVMVKSDLCWMKTAEKGDCDFDHGGYFLIKGAEKVFIAQEQICLKRLWISN 255

Query: 2567 TPTWTVAYRPVSKRKRVYIKLV--PKVENVMGADKILTVYFYVTEFPIWVLFFALGVSND 2394
               WTV+Y+   KR R+ ++LV    +E+V    K LTVYF  TE P+W+LFFALGV++D
Sbjct: 256  IQGWTVSYKSEIKRNRLIVRLVGLSALEDVKAEKKCLTVYFLSTEIPLWILFFALGVTSD 315

Query: 2393 REVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVE 2214
            +EV++LI     D+ I NI  ASI+DAD+K EGFR+   A++++   ++  + PP E+ E
Sbjct: 316  KEVIDLIGYGSNDARIVNIFFASIHDADEKTEGFRRGKEALEYVVRQIRGTRFPPGEN-E 374

Query: 2213 ECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDXXXXXXXXXXXXXXXXL 2034
            +    YLFP L S RQKA  L YMVKCLL+AY G+RK +N D                 L
Sbjct: 375  DFFLLYLFPTLHSLRQKARFLGYMVKCLLQAYNGQRKCNNWDSFRNKRFELAKELLEREL 434

Query: 2033 KIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERV 1854
            K+HI HA R M K++Q+DL  DR+++PIEHYLDASI+TNGLSRAFSTGAWSHPYK+MER+
Sbjct: 435  KVHIAHARRRMAKALQKDLYGDRDVRPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERI 494

Query: 1853 SGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLV 1674
            SGVVA + R NPLQ   D+RKTR  V YTG+VGDAR+PHPSHWG++CFLSTPDGENCGLV
Sbjct: 495  SGVVANLGRANPLQTMVDLRKTRYHVQYTGKVGDARFPHPSHWGRVCFLSTPDGENCGLV 554

Query: 1673 KNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSS 1494
            KNLA+ GLVS  IL  E L+ +    GMEK+ +D  S LD K K+FL+G+WVG+C+DS  
Sbjct: 555  KNLATTGLVSVNIL--EPLIDKLIARGMEKVPEDSHSDLDEKDKVFLNGEWVGVCEDSRL 612

Query: 1493 FVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKG-DFS 1317
            FV++LRR RRR ++P QVEIK+D+   EVRIF DAGRILRPLLVVQNL KI+  KG + +
Sbjct: 613  FVAELRRLRRRKKLPQQVEIKRDEQQQEVRIFSDAGRILRPLLVVQNLHKIEAFKGGNCT 672

Query: 1316 FQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLI 1137
            FQSLLD G+IEF+G EEEEDC TAWGIK L +       ++YTHCELD SFLLGLSCG+I
Sbjct: 673  FQSLLDKGIIEFVGTEEEEDCSTAWGIKFLLSGVDGKQSLKYTHCELDMSFLLGLSCGII 732

Query: 1136 PFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKS 957
            PFANHDHARRVLYQ++KHSQQAIG+ TTNP+IR+DT SHQLYYPQRPLFRT+ +DCLGK 
Sbjct: 733  PFANHDHARRVLYQAQKHSQQAIGFPTTNPNIRVDTLSHQLYYPQRPLFRTVTSDCLGKP 792

Query: 956  KLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAE 777
              +     ++P+PE +NGQ AIVAVNVHLGYNQEDSLVMNRASLERGMFR+EH+RSYKA+
Sbjct: 793  GDTRGHNGIVPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAD 852

Query: 776  VENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVD 597
            V+N E   K++K DD V+FGK  SKIGRVDSL+DDGFP++GANLQ+GDIVIG+ A SG D
Sbjct: 853  VDNKELLDKRRKYDDNVNFGKIPSKIGRVDSLDDDGFPFIGANLQSGDIVIGRCAESGPD 912

Query: 596  HSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 417
            HSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ
Sbjct: 913  HSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 972

Query: 416  ENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDIT 237
            ENFPFT+QGIVPDIVINPH+FPSRQTPGQ               +KYATPFST SVE IT
Sbjct: 973  ENFPFTRQGIVPDIVINPHSFPSRQTPGQLLEAALGKGIACGGSMKYATPFSTLSVEAIT 1032

Query: 236  AQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTR 57
             QLHR GFSRWG+ERVY+GRTGE V SLIFMGPTFYQRL HM+EDKVKFRNTGPVHPLTR
Sbjct: 1033 NQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTR 1092

Query: 56   QPVADRKRFGGIKFGEME 3
            QPVADRKRFGGIKFGEME
Sbjct: 1093 QPVADRKRFGGIKFGEME 1110


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
          Length = 1019

 Score = 1387 bits (3591), Expect = 0.0
 Identities = 681/927 (73%), Positives = 775/927 (83%), Gaps = 2/927 (0%)
 Frame = -2

Query: 2777 FVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQEQ 2598
            +VDK  +++ + DVI GR+PVM+KSDLCWMN  EK DC+FD GGYF+IKGAEKTFIAQEQ
Sbjct: 2    YVDKDPISEDNRDVIIGRIPVMLKSDLCWMNGVEKSDCDFDHGGYFLIKGAEKTFIAQEQ 61

Query: 2597 MCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP-KVENVMGADKILTVYFYVTEFPIWVL 2421
            +CL RLWV+ +P+WTVAYR VSKRKRVYIKL P K E++ G +K+L+VYF   EFPIW+L
Sbjct: 62   ICLKRLWVSNSPSWTVAYRDVSKRKRVYIKLEPPKREHIRGGEKVLSVYFSAVEFPIWIL 121

Query: 2420 FFALGVSNDREVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIEDLMKSV 2241
            FFALG S+D+EVVNLID D EDS I N+LIASIYDAD+  +GFR+  NA+  I   +++ 
Sbjct: 122  FFALGASSDKEVVNLIDCDGEDSRIVNVLIASIYDADENCKGFRRGRNAINDIMKKIENC 181

Query: 2240 KSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDXXXXXXXX 2061
            K PP+ES+E  + NYLFPNLS  RQKA  L YMVKCLL+AY GRRK+DNRDD        
Sbjct: 182  KFPPQESIEAFLSNYLFPNLSGFRQKARFLGYMVKCLLQAYTGRRKIDNRDDFRNKRLEL 241

Query: 2060 XXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTGAWS 1881
                    L++H+KHAER MVK++QRDL  +R +  IEHYLDASIITNGLSRAFSTGAWS
Sbjct: 242  AGELLERELRVHVKHAERRMVKAMQRDLYGERVIHAIEHYLDASIITNGLSRAFSTGAWS 301

Query: 1880 HPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLST 1701
            HPYKKMER+SGVVAT+RRTNPLQ  ADMRKTRQQVSYTG+VGDARYPHPSHWGKICFLST
Sbjct: 302  HPYKKMERISGVVATLRRTNPLQTIADMRKTRQQVSYTGKVGDARYPHPSHWGKICFLST 361

Query: 1700 PDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKIFLDGDW 1521
            PDGENCGLVKNLA  GLVST I  +E  L +  + GMEKL DD S+LL GK K+FLDG+W
Sbjct: 362  PDGENCGLVKNLAITGLVSTNI--EEHFLDKLLDSGMEKLVDDTSTLLSGKVKVFLDGNW 419

Query: 1520 VGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKI 1341
            VG+C DS SFV+ LRRKRRR EVP+QVEIK+D+ H EVR+F DAGRILRPLLVV+NL KI
Sbjct: 420  VGVCGDSVSFVAALRRKRRRKEVPHQVEIKRDEQHREVRVFSDAGRILRPLLVVENLGKI 479

Query: 1340 KDLKG-DFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSF 1164
            K  KG D+SFQSLLD GVIEFIG EEEEDC+TAWGI +LF        V+YTHCELD SF
Sbjct: 480  KASKGGDYSFQSLLDKGVIEFIGTEEEEDCRTAWGINYLFMENEAKATVKYTHCELDMSF 539

Query: 1163 LLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRT 984
            LLGLS  +IPFANHDHARRVLYQSEKHSQQA+G++TTNP+IR+DTN+HQLYYPQRPLFRT
Sbjct: 540  LLGLSAAIIPFANHDHARRVLYQSEKHSQQAMGFNTTNPNIRVDTNTHQLYYPQRPLFRT 599

Query: 983  ILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRT 804
            +++DCLGK         ++PR E+FNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFR+
Sbjct: 600  MVSDCLGKPGYPLGHNGIVPRAEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 659

Query: 803  EHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVI 624
            EH+RSYKA+V+N E+ GKK K +D V+FGK QSKIGRVDSL+DDGFP++GANLQ GDIV+
Sbjct: 660  EHIRSYKADVDNKESVGKKPKFEDSVNFGKVQSKIGRVDSLDDDGFPFIGANLQNGDIVV 719

Query: 623  GKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQK 444
            G+ A SG DHSIKLKHTERGMVQKVVLS+NDEGKNFAVVSLRQVR+PCLGDKFSSMHGQK
Sbjct: 720  GRCAESGADHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVRTPCLGDKFSSMHGQK 779

Query: 443  GVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPF 264
            GVLGFLESQENFPFT QGIVPDIV+NPHAFPSRQTPGQ                KYATPF
Sbjct: 780  GVLGFLESQENFPFTIQGIVPDIVVNPHAFPSRQTPGQLLEAALGKGIACGGLQKYATPF 839

Query: 263  STPSVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRN 84
            ST SV+ +T QLHR GFSRWG ERVY+GRTGE +HSL+FMGPTFYQRLTHMSEDKVKFRN
Sbjct: 840  STLSVDAVTDQLHRAGFSRWGSERVYNGRTGEMIHSLVFMGPTFYQRLTHMSEDKVKFRN 899

Query: 83   TGPVHPLTRQPVADRKRFGGIKFGEME 3
            TGPVHPLTRQPVADRKRFGGIKFGEME
Sbjct: 900  TGPVHPLTRQPVADRKRFGGIKFGEME 926


>ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score = 1386 bits (3588), Expect = 0.0
 Identities = 692/1040 (66%), Positives = 821/1040 (78%), Gaps = 5/1040 (0%)
 Frame = -2

Query: 3107 NDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGD-WRYASLKFGKVTLEHPTFFAGEKFSS 2931
            N FV  G+Q  FDS G++ V P FDPSKKG+ + +RYAS+KFGKV L+ P F+ GE    
Sbjct: 80   NHFVAIGLQNTFDSFGDLVVTPGFDPSKKGENEHFRYASVKFGKVKLDKPMFWGGE---- 135

Query: 2930 VDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLND 2751
              G  +  K+ PR+AR+Q MTY+S++K++  +QVY     RSDKFKTG E F+D+ ++ +
Sbjct: 136  --GNAQEFKMLPRHARIQRMTYASKVKIQVKVQVYVPKKVRSDKFKTGKEEFLDREIMKE 193

Query: 2750 YHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVT 2571
               ++I GRLPVMVKSDLCWM  +EK D EFD GGYF++KGAEKTFIAQEQ+ L RLWV 
Sbjct: 194  DEREIIIGRLPVMVKSDLCWMKDAEKDDDEFDHGGYFIVKGAEKTFIAQEQLYLKRLWVM 253

Query: 2570 KTPTWTVAYRPVSKRKRVYIKLV--PKVENVMGADKILTVYFYVTEFPIWVLFFALGVSN 2397
             +P W +AY+   KR R+ IKLV   + E V   D  LTVYF   E P+WVLFFALGVS+
Sbjct: 254  NSPGWMIAYKSQMKRNRMVIKLVGNSRSEEVENGDMCLTVYFLSVEVPVWVLFFALGVSS 313

Query: 2396 DREVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESV 2217
            D+E+V+LI    +D  I NIL AS+ DAD+K   FR+  NAV+++E  +KSV+ PP ES+
Sbjct: 314  DKEIVDLIGCGNDDVRIQNILFASVRDADEKCGAFRRVRNAVQYLEKCVKSVQFPPSESM 373

Query: 2216 EECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDXXXXXXXXXXXXXXXX 2037
            +EC++ Y+FP +S   +KA  LAYMVK LL AY GRRK DNRDD                
Sbjct: 374  QECLEMYVFPGISGLNRKARFLAYMVKGLLLAYTGRRKCDNRDDFRNKRLELASELLDRE 433

Query: 2036 LKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMER 1857
            LK+H+ HA + M K++QRDL  DR+++PIEHYLDASIITNGL RAFSTGAWSHPYK+MER
Sbjct: 434  LKVHVAHARKRMAKALQRDLYGDRDVRPIEHYLDASIITNGLQRAFSTGAWSHPYKRMER 493

Query: 1856 VSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGL 1677
            +SGVVA + RTNPLQ  A++R+ RQQV YTG+VGDARYPHPSHWGK+CFL+TPDGENCGL
Sbjct: 494  ISGVVANVGRTNPLQTMAELRRARQQVQYTGKVGDARYPHPSHWGKVCFLTTPDGENCGL 553

Query: 1676 VKNLASMGLVSTTILQ-QESLLQRFRECGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDS 1500
            VKNL+  GLVST +    ES+L +  +CGM++L DD S+ L    K+ L+GDWVG+C DS
Sbjct: 554  VKNLSVTGLVSTDVTDVTESILLKLVDCGMQELVDDTSTHLGSMDKVLLNGDWVGVCPDS 613

Query: 1499 SSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD- 1323
            SSFV++LR +RRR E+P+QVEIK+D+   EVRI+ DAGRILRPLLVV NL KIK  K D 
Sbjct: 614  SSFVAELRSRRRRNELPHQVEIKRDQSQHEVRIYSDAGRILRPLLVVGNLLKIKGFKSDR 673

Query: 1322 FSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCG 1143
            +SFQSLLD GVIE IGPEEEEDC TAWG+++LF  E     V+YTHCELD SFLLGLSC 
Sbjct: 674  YSFQSLLDKGVIELIGPEEEEDCCTAWGVEYLFGKE-GKRSVKYTHCELDMSFLLGLSCS 732

Query: 1142 LIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLG 963
            L+PFANHDHARRVLYQS+KHS QAIG+STTNP+IR+DT SHQL+YPQ+PLFRT+ +DCLG
Sbjct: 733  LVPFANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDTLSHQLHYPQKPLFRTMTSDCLG 792

Query: 962  KSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYK 783
            K   S  Q  + P+ EF+NGQ AIVAVNVHLGYNQEDSLVMNRASL+RGMFR+EH+RSYK
Sbjct: 793  KPDHSLGQSKIPPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYK 852

Query: 782  AEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASG 603
            +E++N E+  KK+K +D+V+F K QSKIGRVDSL+DDGFPYVGANLQ+GDI+IGK A SG
Sbjct: 853  SEIDNKESSDKKRKPEDIVNFAKLQSKIGRVDSLDDDGFPYVGANLQSGDIIIGKCAESG 912

Query: 602  VDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE 423
             D+S+KLKHTERG VQKVVLSSNDEGKNFAVVSLRQVRSP LGDKFSSMHGQKGVLGFLE
Sbjct: 913  ADNSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLE 972

Query: 422  SQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVED 243
            SQENFPFT+QGIVPDIVINPHAFPSRQTPGQ               LK ATPFSTPSV+ 
Sbjct: 973  SQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDA 1032

Query: 242  ITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPL 63
            IT QLHR GFSRWG+ERVY+GRTGE V SLIFMGPTFYQRL HMSEDKVKFRNTGPVHPL
Sbjct: 1033 ITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPL 1092

Query: 62   TRQPVADRKRFGGIKFGEME 3
            TRQPVADRKRFGGIKFGEME
Sbjct: 1093 TRQPVADRKRFGGIKFGEME 1112


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1197

 Score = 1379 bits (3569), Expect = 0.0
 Identities = 680/1042 (65%), Positives = 813/1042 (78%), Gaps = 7/1042 (0%)
 Frame = -2

Query: 3107 NDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSV 2928
            NDF+K+GIQ+ FD  G+I V+P +DPSKKGDG+WRYA++KFGKVTL+ P F+ G      
Sbjct: 74   NDFIKNGIQKAFDFFGDILVQPGYDPSKKGDGEWRYATVKFGKVTLDKPKFWGGAASG-- 131

Query: 2927 DGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDY 2748
                +   + PR+ARLQNMTYSSR+K+   L++YT+ L  SDKFKTG + +VDK  +   
Sbjct: 132  ----KEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGA 187

Query: 2747 --HSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWV 2574
              + DV  GRLPVMV SDLCWM   +KRDCEFD+GGYF+IKGAEK FIAQEQ+CL RLW+
Sbjct: 188  SDNRDVFIGRLPVMVNSDLCWMKDGQKRDCEFDRGGYFLIKGAEKIFIAQEQICLRRLWI 247

Query: 2573 TKTPTWTVAYRPVSKRKRVYIKLVP--KVENVMGADKILTVYFYVTEFPIWVLFFALGVS 2400
            +    WTVAYR   KR R+ I+LV   K E++   +K+L VYF  TE P+W+LFFALGVS
Sbjct: 248  SNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWILFFALGVS 307

Query: 2399 NDREVVNLIDLDIEDSAIANILIASI--YDADKKYEGFRKEGNAVKHIEDLMKSVKSPPK 2226
            +D+E+V+LID   +D  + NIL AS+   D D K++ FR+   A+  +++ ++    PP 
Sbjct: 308  SDKEIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIRKTSFPPA 367

Query: 2225 ESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDXXXXXXXXXXXXX 2046
            + +E+C+  YLF +L   +QK   L YMVKCLL+AY GRRK DNRDD             
Sbjct: 368  DKIEDCLNLYLFASLKGSKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELAAELL 427

Query: 2045 XXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKK 1866
               LK+HI HA R M K++QRDL  DR++ PIEHYLDASIITNGLSRAFSTGAW+H +K+
Sbjct: 428  ERELKVHIAHARRRMEKALQRDLYGDRQVHPIEHYLDASIITNGLSRAFSTGAWAHAFKR 487

Query: 1865 MERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGEN 1686
            MER+SGVVAT+ R NPLQ  A++R+TRQQV+YTG+VGDARYPHPSHWG++CFLSTPDGEN
Sbjct: 488  MERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGEN 547

Query: 1685 CGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKIFLDGDWVGICK 1506
            CGL+KNL+  GLVS     ++S+      CGME L D+ S+   GKY+IFLDG+WVG+C+
Sbjct: 548  CGLIKNLSGTGLVSLNT--KKSITPTLFRCGMENLVDNTSTSFCGKYRIFLDGEWVGVCE 605

Query: 1505 DSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKG 1326
            DS SFV+ +RRKRRR    +QVE+K+D+   EVRIF DAGRILRPLLVV+NL +I   KG
Sbjct: 606  DSLSFVTNVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSKG 665

Query: 1325 D-FSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLS 1149
            + ++FQSLLD G+IE IG EEEEDC+ AW IKHL     D    +Y+HCELD SFLLGLS
Sbjct: 666  ENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLME---DEGTTKYSHCELDMSFLLGLS 722

Query: 1148 CGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADC 969
            CGL+PFANHDHARR L+QS+KHS QAIG+S TN + R+DT SHQL+YPQRPLFRT+ ADC
Sbjct: 723  CGLVPFANHDHARRALFQSQKHSNQAIGFSPTNSNFRVDTLSHQLHYPQRPLFRTMTADC 782

Query: 968  LGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRS 789
            LG          +LP+PEF+NGQ AIVAVNVHLGYNQEDSLVMNRASLERGMFR+EH+RS
Sbjct: 783  LGTPGYLSSHAGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRS 842

Query: 788  YKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAA 609
            YKAEV+N E+  K++K DD ++FGKTQSKIGRVDSL+DDGFPY+GANLQ+GDIVIG+ A 
Sbjct: 843  YKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRCAE 902

Query: 608  SGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGF 429
            SG DHSIKLKHTE+GMVQKVVLSSND+GKN+AVVSLRQVRSPCLGDKFSSMHGQKGVLGF
Sbjct: 903  SGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGF 962

Query: 428  LESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSV 249
            LESQENFPFT QGIVPDIVINPHAFPSRQTPGQ               LKYATPFSTPSV
Sbjct: 963  LESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTPSV 1022

Query: 248  EDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVH 69
            + IT QLHR GFSRWG ERVY+GRTGE + SLIFMGPTFYQRL HM+EDKVKFRNTGPVH
Sbjct: 1023 DAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVH 1082

Query: 68   PLTRQPVADRKRFGGIKFGEME 3
            PLTRQPVADRKRFGGIKFGEME
Sbjct: 1083 PLTRQPVADRKRFGGIKFGEME 1104


>ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score = 1374 bits (3556), Expect = 0.0
 Identities = 690/1043 (66%), Positives = 818/1043 (78%), Gaps = 8/1043 (0%)
 Frame = -2

Query: 3107 NDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGD-WRYASLKFGKVTLEHPTFFAGEKFSS 2931
            N F+  G+Q+ F+S G++ V P FDPSKKG+ + +RYAS+KFG V L+ P F+ GE    
Sbjct: 77   NHFIHTGLQKTFESFGDLVVTPGFDPSKKGENEHFRYASVKFGNVKLDKPMFWGGE---- 132

Query: 2930 VDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLND 2751
              G  +  K+ PR+AR+Q MTY+S++K++  +QVY     RSDKFKTG   F+D+ V+ +
Sbjct: 133  --GNAQEFKMLPRHARIQRMTYASKVKIQVKVQVYVPKKVRSDKFKTGKAEFLDREVMKE 190

Query: 2750 YHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVT 2571
               ++I GRLPVMVKSDLCWM  +EK D EFD GGYF++KGAEKTFIAQEQ+ L RLWV 
Sbjct: 191  DEREIIIGRLPVMVKSDLCWMKEAEKEDDEFDHGGYFIVKGAEKTFIAQEQLYLKRLWVM 250

Query: 2570 KTPTWTVAYRPVSKRKRVYIKLV--PKVENVMGADKILTVYFYVTEFPIWVLFFALGVSN 2397
             +P W +AY+   KR R+ IKLV   + E V   D  L VYF   E P+WVLFFALGVS+
Sbjct: 251  NSPGWMIAYKSQMKRNRMVIKLVGNSRGEEVENGDMSLAVYFLSVEVPVWVLFFALGVSS 310

Query: 2396 DREVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESV 2217
            D+E+V+LI    +D  I NIL AS+ DAD+K   FR+  +AV+++E  +KSV+ PP ES+
Sbjct: 311  DKEIVDLIGCGNDDVRIQNILFASVRDADEKCGAFRRGRHAVQYLEKCVKSVQFPPSESM 370

Query: 2216 EECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDXXXXXXXXXXXXXXXX 2037
            +EC++ Y+FP +S   +KA  LAYMVK LL AY GRRK DNRDD                
Sbjct: 371  QECLEMYVFPGISGLNRKARFLAYMVKGLLLAYTGRRKCDNRDDFRNKRLELASELLDRE 430

Query: 2036 LKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMER 1857
            LK+HI HA + M K++QRDL  DR+++PIEHYLDASIITNGL RAFSTGAWSHPYK+MER
Sbjct: 431  LKVHIAHARKRMAKALQRDLYGDRDVRPIEHYLDASIITNGLQRAFSTGAWSHPYKRMER 490

Query: 1856 VSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGL 1677
            +SGVVA + RTNPLQ  A++R+ RQQV YTG+VGDARYPHPSHWGK+CFLSTPDGENCGL
Sbjct: 491  ISGVVANVGRTNPLQTMAELRRARQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGL 550

Query: 1676 VKNLASMGLVSTTILQ-QESLLQRFRECGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDS 1500
            VKNLA  GLVST +    E +L +  +CGME+L DD S+ L  K K+ L+GDWVG+C DS
Sbjct: 551  VKNLAVTGLVSTDVSAVSEYILPKLLDCGMEELVDDTSTHLGNKDKVLLNGDWVGVCPDS 610

Query: 1499 SSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKGDF 1320
            SSFV++LR +RRR E+P+QVEIK+D+   EVRI+ DAGRILRPLLVV NL KIK  K D 
Sbjct: 611  SSFVAELRSRRRRNELPHQVEIKRDQSQHEVRIYSDAGRILRPLLVVGNLLKIKGFKSDC 670

Query: 1319 -SFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCG 1143
             SFQSLLD GVIE IGPEEEEDC TAWG+++LF  E     V+YTHCELD SFLLGLSC 
Sbjct: 671  NSFQSLLDKGVIELIGPEEEEDCCTAWGVEYLFGKE-GKRSVKYTHCELDMSFLLGLSCS 729

Query: 1142 LIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLG 963
            L+PFANHDHARRVLYQS+KHS QAIG+STTNP+IR+DT SHQL+YPQ+PLFRT+ +DCLG
Sbjct: 730  LVPFANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDTLSHQLHYPQKPLFRTMASDCLG 789

Query: 962  KSKLSDHQKWML---PRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVR 792
            K   S  Q  +    P+ EF+NGQ AIVAVNVHLGYNQEDSLVMNRASL+RGMFR+EH+R
Sbjct: 790  KPDNSLGQNKISKIPPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIR 849

Query: 791  SYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHA 612
            SYK+E++N E+  KK+K +D+V+F K QSKIGRVDSL+DDGFPYVGANLQ+GDI+IGK A
Sbjct: 850  SYKSEIDNKESSDKKRKPEDIVNFAKLQSKIGRVDSLDDDGFPYVGANLQSGDIIIGKGA 909

Query: 611  ASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLG 432
             SG D+S+KLKHTERG VQKVVLSSNDEGKNFAVVSLRQVRSP LGDKFSSMHGQKGVLG
Sbjct: 910  ESGADNSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLG 969

Query: 431  FLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPS 252
            FLESQENFPFT+QGIVPDIVINPHAFPSRQTPGQ               L+ ATPFSTPS
Sbjct: 970  FLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILRQATPFSTPS 1029

Query: 251  VEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPV 72
            V+ IT QLHR GFSRWG+ERVY+GRTGE V SLIFMGPTFYQRL HMSEDKVKFRNTGPV
Sbjct: 1030 VDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPV 1089

Query: 71   HPLTRQPVADRKRFGGIKFGEME 3
            HPLTRQPVADRKRFGGIKFGEME
Sbjct: 1090 HPLTRQPVADRKRFGGIKFGEME 1112


>gb|ESW08936.1| hypothetical protein PHAVU_009G087100g [Phaseolus vulgaris]
          Length = 1202

 Score = 1369 bits (3543), Expect = 0.0
 Identities = 686/1040 (65%), Positives = 818/1040 (78%), Gaps = 5/1040 (0%)
 Frame = -2

Query: 3107 NDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGD-WRYASLKFGKVTLEHPTFFAGEKFSS 2931
            N +   G+Q+ FD  GE+ V P FDPSKKG  + +RYAS+KFGKVTL+ P F+ GE    
Sbjct: 78   NHYANVGLQRTFDGFGELVVTPGFDPSKKGANEHYRYASVKFGKVTLDKPMFWGGE---- 133

Query: 2930 VDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLND 2751
              G  +  K+ PR+ARLQ MTY+S+IK+   +QVY     RSDKFKTG E ++DK +L +
Sbjct: 134  --GNAQEFKMLPRHARLQRMTYASKIKILVKVQVYVPKKVRSDKFKTGKEEYLDKEILKE 191

Query: 2750 YHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVT 2571
               ++I GRLPVMVKSDLCWMN  EK DCEFD GGYF+IKGAEKTFIAQEQ+ L RLWV 
Sbjct: 192  DEREMIIGRLPVMVKSDLCWMNG-EKDDCEFDHGGYFLIKGAEKTFIAQEQLYLKRLWVM 250

Query: 2570 KTPTWTVAYRPVSKRKRVYIKLVPKVENVMG--ADKILTVYFYVTEFPIWVLFFALGVSN 2397
             +P W +AY+   KR R+ IKLV    N  G   D  LTVYF   E P+WVLFFALGV++
Sbjct: 251  NSPGWMIAYKSQMKRNRMVIKLVGNSRNEEGQNGDMFLTVYFLSVEVPVWVLFFALGVTS 310

Query: 2396 DREVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESV 2217
            D++VV+LI  D +D+ I NIL+AS+ DAD+K   FR+  NAV+++E  +KSV+ PP ES+
Sbjct: 311  DKDVVDLIGCDNDDARIQNILLASVCDADEKCGAFRRGRNAVQYLEKYIKSVQFPPPESI 370

Query: 2216 EECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDXXXXXXXXXXXXXXXX 2037
            EEC++ Y+FP +S   +KA  LAYMVK LL AY GRRK DNRDD                
Sbjct: 371  EECLEMYVFPGISGLNRKARFLAYMVKGLLLAYTGRRKCDNRDDFRNKRLELASELLDRE 430

Query: 2036 LKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMER 1857
            LK+HI HA + M K++QRDL  +R+++PIEHYLDASIITNGL RAFSTGAWSHPYK+MER
Sbjct: 431  LKVHIAHARKRMSKALQRDLYGERDVRPIEHYLDASIITNGLQRAFSTGAWSHPYKRMER 490

Query: 1856 VSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGL 1677
            +SGVVA + RTNPLQ  A++R+ RQQV YTG+VGDARYPHPSHWGK+CFLSTPDGENCGL
Sbjct: 491  ISGVVANVGRTNPLQTMAELRRARQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGL 550

Query: 1676 VKNLASMGLVSTTILQ-QESLLQRFRECGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDS 1500
            VKN+A  GLVST +    ES+L     CGME+L +D ++ +  K K+FL+GDWVG+C DS
Sbjct: 551  VKNMAVTGLVSTDVSNASESILPTLLNCGMEELVNDTTTHMGNKDKVFLNGDWVGVCPDS 610

Query: 1499 SSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD- 1323
            S FV++LR +RR+ ++P+QVEIK+D+   EVRI+ DAGRILRPLLVV NL +IK  K D 
Sbjct: 611  SWFVAELRSERRKNKLPHQVEIKRDQSQHEVRIYSDAGRILRPLLVVGNLLRIKRFKSDR 670

Query: 1322 FSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCG 1143
            +SF++LL+ GVIE IGPEEEEDC TAWG+++LF  E     V+YTHCELD SFLLGLSC 
Sbjct: 671  YSFRTLLEEGVIELIGPEEEEDCCTAWGVQYLFGKE-GKRSVKYTHCELDMSFLLGLSCS 729

Query: 1142 LIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLG 963
            L+PFANHDHARRVLYQS+KHS QAIG+ST NP+ RIDT SHQL+YPQRPLF+T+ +DCLG
Sbjct: 730  LVPFANHDHARRVLYQSQKHSSQAIGFSTLNPNTRIDTLSHQLHYPQRPLFQTMASDCLG 789

Query: 962  KSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYK 783
            K      Q  + P+ EF+NGQ AIVAVNVHLGYNQEDSLVMNRASL+RGMFR+EH+RSYK
Sbjct: 790  KPTSPLGQSKIHPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYK 849

Query: 782  AEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASG 603
            +E++N ++  KK+K +D+V+FGK QSKIGRVDSL+DDGFPYVGANLQ+GDI+IG+ A SG
Sbjct: 850  SEIDNKQSSEKKRKSEDIVNFGKLQSKIGRVDSLDDDGFPYVGANLQSGDIIIGRCAESG 909

Query: 602  VDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE 423
             D+S+KLKHTERG VQKVVLSSNDEGKNFA VSLRQVRSP LGDKFSSMHGQKGVLGFLE
Sbjct: 910  ADNSVKLKHTERGYVQKVVLSSNDEGKNFAAVSLRQVRSPVLGDKFSSMHGQKGVLGFLE 969

Query: 422  SQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVED 243
             QENFPFT+QGIVPDIVINPHAFPSRQTPGQ               L++ATPFSTPSV+ 
Sbjct: 970  CQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGKLRHATPFSTPSVDA 1029

Query: 242  ITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPL 63
            IT QLHR GFSRWG+ERVY+GRTGE V SLIFMGPTFYQRL HMSEDKVKFRNTGPVHPL
Sbjct: 1030 ITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPL 1089

Query: 62   TRQPVADRKRFGGIKFGEME 3
            TRQPVADRKRFGGIKFGEME
Sbjct: 1090 TRQPVADRKRFGGIKFGEME 1109