BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00014929
         (402 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006347459.1| PREDICTED: general transcription factor IIH ...    98   1e-18
ref|XP_004241513.1| PREDICTED: general transcription factor IIH ...    98   1e-18
gb|EPS73731.1| hypothetical protein M569_01027, partial [Genlise...    89   6e-16
gb|EXB44374.1| General transcription factor IIH subunit 3 [Morus...    85   1e-14
ref|XP_004290858.1| PREDICTED: general transcription factor IIH ...    84   1e-14
ref|XP_004290857.1| PREDICTED: general transcription factor IIH ...    84   1e-14
ref|XP_002284465.1| PREDICTED: general transcription factor IIH ...    83   4e-14
ref|XP_006416613.1| hypothetical protein EUTSA_v10008316mg [Eutr...    82   6e-14
gb|EMJ24450.1| hypothetical protein PRUPE_ppa009386mg [Prunus pe...    82   6e-14
ref|XP_002307429.2| basal transcription factor complex subunit-r...    82   1e-13
ref|XP_002532948.1| RNA polymerase II transcription factor B sub...    81   1e-13
ref|XP_006472763.1| PREDICTED: general transcription factor IIH ...    81   2e-13
ref|XP_006472762.1| PREDICTED: general transcription factor IIH ...    81   2e-13
ref|XP_006434174.1| hypothetical protein CICLE_v100020021mg, par...    81   2e-13
gb|EOY16262.1| Basal transcription factor complex subunit-relate...    79   6e-13
gb|EOY16261.1| Basal transcription factor complex subunit-relate...    79   6e-13
ref|XP_004170865.1| PREDICTED: general transcription factor IIH ...    77   2e-12
ref|XP_004152842.1| PREDICTED: general transcription factor IIH ...    77   2e-12
ref|XP_006305456.1| hypothetical protein CARUB_v10009867mg [Caps...    76   5e-12
ref|NP_564050.1| basal transcription factor complex subunit-rela...    75   7e-12

>ref|XP_006347459.1| PREDICTED: general transcription factor IIH subunit 3-like [Solanum
           tuberosum]
          Length = 290

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 55/90 (61%), Positives = 63/90 (70%), Gaps = 1/90 (1%)
 Frame = -2

Query: 269 MTPVSSKLYTDDVSLLMVLIDTNPFFWNSVKST-IPFFKFLSHVLAFXXXXXXXXXXXXX 93
           MTPVSSKLY DDVSLLMVL+DTNP+FW+S+K+T   F KF+SHVLAF             
Sbjct: 1   MTPVSSKLYADDVSLLMVLVDTNPYFWSSMKNTAFTFPKFISHVLAFLNSILLLNQMNQV 60

Query: 92  XXIATGHSYCDYVFDSSASQSQNLRAEHLL 3
             IATG++ CDYVFDSS S  Q  RAE LL
Sbjct: 61  VVIATGYNSCDYVFDSSTSSMQ--RAECLL 88


>ref|XP_004241513.1| PREDICTED: general transcription factor IIH subunit 3-like [Solanum
           lycopersicum]
          Length = 290

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 55/90 (61%), Positives = 63/90 (70%), Gaps = 1/90 (1%)
 Frame = -2

Query: 269 MTPVSSKLYTDDVSLLMVLIDTNPFFWNSVKST-IPFFKFLSHVLAFXXXXXXXXXXXXX 93
           MTPVSSKLY DDVSLLMVL+DTNP+FW+S+K+T   F KF+SHVLAF             
Sbjct: 1   MTPVSSKLYADDVSLLMVLVDTNPYFWSSMKNTAFTFPKFISHVLAFLNSILLLNQMNQV 60

Query: 92  XXIATGHSYCDYVFDSSASQSQNLRAEHLL 3
             IATG++ CDYVFDSS S  Q  RAE LL
Sbjct: 61  VVIATGYNSCDYVFDSSTSSMQ--RAECLL 88


>gb|EPS73731.1| hypothetical protein M569_01027, partial [Genlisea aurea]
          Length = 208

 Score = 89.0 bits (219), Expect = 6e-16
 Identities = 43/82 (52%), Positives = 55/82 (67%)
 Frame = -2

Query: 269 MTPVSSKLYTDDVSLLMVLIDTNPFFWNSVKSTIPFFKFLSHVLAFXXXXXXXXXXXXXX 90
           M  ++SK Y DDVSLLMVL+D NPF W+S+KS  PF  FLSHV++F              
Sbjct: 1   MDSLTSKTYADDVSLLMVLMDANPFSWDSLKSAFPFSNFLSHVVSFLNAILLLNPLNHVV 60

Query: 89  XIATGHSYCDYVFDSSASQSQN 24
            IATG SYCD++FDS+ SQ+Q+
Sbjct: 61  VIATGFSYCDFIFDSTTSQNQS 82


>gb|EXB44374.1| General transcription factor IIH subunit 3 [Morus notabilis]
          Length = 236

 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 44/83 (53%), Positives = 54/83 (65%)
 Frame = -2

Query: 269 MTPVSSKLYTDDVSLLMVLIDTNPFFWNSVKSTIPFFKFLSHVLAFXXXXXXXXXXXXXX 90
           M    SKLY DDVSLLMVL+DTNP FW++  S++PF  FLSHVL+F              
Sbjct: 1   MASAPSKLYADDVSLLMVLLDTNPLFWST--SSLPFSNFLSHVLSFLNSILLLNQLNQVA 58

Query: 89  XIATGHSYCDYVFDSSASQSQNL 21
            IATG++ CDY+FDSS S S+ L
Sbjct: 59  VIATGYNSCDYIFDSSVSTSRGL 81


>ref|XP_004290858.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
           2 [Fragaria vesca subsp. vesca]
          Length = 298

 Score = 84.3 bits (207), Expect = 1e-14
 Identities = 43/81 (53%), Positives = 54/81 (66%)
 Frame = -2

Query: 269 MTPVSSKLYTDDVSLLMVLIDTNPFFWNSVKSTIPFFKFLSHVLAFXXXXXXXXXXXXXX 90
           M  V SKLY DDVSLLMVL+DTNPFFW+S  S++PF K+LSHVL F              
Sbjct: 1   MASVPSKLYADDVSLLMVLLDTNPFFWSS--SSLPFSKYLSHVLTFLNSILLLNQLNQVV 58

Query: 89  XIATGHSYCDYVFDSSASQSQ 27
            IATG+S C Y++DS+++  Q
Sbjct: 59  VIATGYSSCSYIYDSASAPGQ 79


>ref|XP_004290857.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
           1 [Fragaria vesca subsp. vesca]
          Length = 300

 Score = 84.3 bits (207), Expect = 1e-14
 Identities = 43/81 (53%), Positives = 54/81 (66%)
 Frame = -2

Query: 269 MTPVSSKLYTDDVSLLMVLIDTNPFFWNSVKSTIPFFKFLSHVLAFXXXXXXXXXXXXXX 90
           M  V SKLY DDVSLLMVL+DTNPFFW+S  S++PF K+LSHVL F              
Sbjct: 1   MASVPSKLYADDVSLLMVLLDTNPFFWSS--SSLPFSKYLSHVLTFLNSILLLNQLNQVV 58

Query: 89  XIATGHSYCDYVFDSSASQSQ 27
            IATG+S C Y++DS+++  Q
Sbjct: 59  VIATGYSSCSYIYDSASAPGQ 79


>ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
           vinifera] gi|302141830|emb|CBI19033.3| unnamed protein
           product [Vitis vinifera]
          Length = 297

 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 42/77 (54%), Positives = 55/77 (71%)
 Frame = -2

Query: 269 MTPVSSKLYTDDVSLLMVLIDTNPFFWNSVKSTIPFFKFLSHVLAFXXXXXXXXXXXXXX 90
           M PV SKLY+DDVSLL+VL+DTNPFFW++  +++PF KFLSHVLAF              
Sbjct: 1   MAPVPSKLYSDDVSLLVVLLDTNPFFWST--ASLPFSKFLSHVLAFLNSILLINQLNQVV 58

Query: 89  XIATGHSYCDYVFDSSA 39
            IATG + C+++FDSS+
Sbjct: 59  VIATGCNSCNFIFDSSS 75


>ref|XP_006416613.1| hypothetical protein EUTSA_v10008316mg [Eutrema salsugineum]
           gi|557094384|gb|ESQ34966.1| hypothetical protein
           EUTSA_v10008316mg [Eutrema salsugineum]
          Length = 300

 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 42/85 (49%), Positives = 58/85 (68%)
 Frame = -2

Query: 269 MTPVSSKLYTDDVSLLMVLIDTNPFFWNSVKSTIPFFKFLSHVLAFXXXXXXXXXXXXXX 90
           M  V+SKLY+DDVSLL++L+DTNPFFW++  ++I F +FLSHVLAF              
Sbjct: 1   MASVASKLYSDDVSLLVLLLDTNPFFWST--TSIKFSQFLSHVLAFLNAVLGLNQLNQVV 58

Query: 89  XIATGHSYCDYVFDSSASQSQNLRA 15
            IATG+S CDY++DSS + + N  +
Sbjct: 59  VIATGYSSCDYIYDSSLTPNGNFES 83


>gb|EMJ24450.1| hypothetical protein PRUPE_ppa009386mg [Prunus persica]
          Length = 295

 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 43/81 (53%), Positives = 52/81 (64%)
 Frame = -2

Query: 269 MTPVSSKLYTDDVSLLMVLIDTNPFFWNSVKSTIPFFKFLSHVLAFXXXXXXXXXXXXXX 90
           M    SKLY DDVSLLMVL+DTNPFFW+S  S++PF  FLSHVL F              
Sbjct: 1   MASAPSKLYADDVSLLMVLLDTNPFFWSS--SSLPFSVFLSHVLTFLNSILLLNQLNQVV 58

Query: 89  XIATGHSYCDYVFDSSASQSQ 27
            IATG++ C Y++DSS S +Q
Sbjct: 59  VIATGYNSCSYIYDSSTSTNQ 79


>ref|XP_002307429.2| basal transcription factor complex subunit-related family protein
           [Populus trichocarpa] gi|550339079|gb|EEE94425.2| basal
           transcription factor complex subunit-related family
           protein [Populus trichocarpa]
          Length = 298

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 42/81 (51%), Positives = 56/81 (69%)
 Frame = -2

Query: 269 MTPVSSKLYTDDVSLLMVLIDTNPFFWNSVKSTIPFFKFLSHVLAFXXXXXXXXXXXXXX 90
           MT V SKLY+DDVSL++VL+DTNPFFW +  S++ F +FLSHVLAF              
Sbjct: 1   MTSVPSKLYSDDVSLVVVLLDTNPFFW-TPPSSLSFSQFLSHVLAFVNSILLLNQLNQVV 59

Query: 89  XIATGHSYCDYVFDSSASQSQ 27
            IA+G++ CDY++DSS+  SQ
Sbjct: 60  VIASGYNTCDYIYDSSSDASQ 80


>ref|XP_002532948.1| RNA polymerase II transcription factor B subunit, putative [Ricinus
           communis] gi|223527277|gb|EEF29432.1| RNA polymerase II
           transcription factor B subunit, putative [Ricinus
           communis]
          Length = 266

 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 41/76 (53%), Positives = 52/76 (68%)
 Frame = -2

Query: 269 MTPVSSKLYTDDVSLLMVLIDTNPFFWNSVKSTIPFFKFLSHVLAFXXXXXXXXXXXXXX 90
           M  V SKLY+DDVSL+MVL+DTNPFFW +  S++PF +FLSHVLAF              
Sbjct: 1   MASVPSKLYSDDVSLVMVLLDTNPFFWTT--SSLPFSQFLSHVLAFLNSILLLNQLNQVV 58

Query: 89  XIATGHSYCDYVFDSS 42
            IA G++ CDY++DSS
Sbjct: 59  VIANGYNSCDYIYDSS 74


>ref|XP_006472763.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
           X2 [Citrus sinensis]
          Length = 293

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 41/83 (49%), Positives = 58/83 (69%)
 Frame = -2

Query: 269 MTPVSSKLYTDDVSLLMVLIDTNPFFWNSVKSTIPFFKFLSHVLAFXXXXXXXXXXXXXX 90
           M    SKLY+DDVSL++VL+DTNPFFW+S  S++ F +FL+HVLAF              
Sbjct: 1   MASAPSKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFFNAILTLNQLNQVV 58

Query: 89  XIATGHSYCDYVFDSSASQSQNL 21
            IATG++ CDYV+DSS++ +Q++
Sbjct: 59  VIATGYNSCDYVYDSSSTGNQSV 81


>ref|XP_006472762.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
           X1 [Citrus sinensis]
          Length = 298

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 41/83 (49%), Positives = 58/83 (69%)
 Frame = -2

Query: 269 MTPVSSKLYTDDVSLLMVLIDTNPFFWNSVKSTIPFFKFLSHVLAFXXXXXXXXXXXXXX 90
           M    SKLY+DDVSL++VL+DTNPFFW+S  S++ F +FL+HVLAF              
Sbjct: 1   MASAPSKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFFNAILTLNQLNQVV 58

Query: 89  XIATGHSYCDYVFDSSASQSQNL 21
            IATG++ CDYV+DSS++ +Q++
Sbjct: 59  VIATGYNSCDYVYDSSSTGNQSV 81


>ref|XP_006434174.1| hypothetical protein CICLE_v100020021mg, partial [Citrus
           clementina] gi|557536296|gb|ESR47414.1| hypothetical
           protein CICLE_v100020021mg, partial [Citrus clementina]
          Length = 174

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 41/83 (49%), Positives = 58/83 (69%)
 Frame = -2

Query: 269 MTPVSSKLYTDDVSLLMVLIDTNPFFWNSVKSTIPFFKFLSHVLAFXXXXXXXXXXXXXX 90
           M    SKLY+DDVSL++VL+DTNPFFW+S  S++ F +FL+HVLAF              
Sbjct: 1   MASAPSKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVV 58

Query: 89  XIATGHSYCDYVFDSSASQSQNL 21
            IATG++ CDYV+DSS++ +Q++
Sbjct: 59  VIATGYNSCDYVYDSSSTGNQSV 81


>gb|EOY16262.1| Basal transcription factor complex subunit-related isoform 2
           [Theobroma cacao]
          Length = 274

 Score = 79.0 bits (193), Expect = 6e-13
 Identities = 40/82 (48%), Positives = 55/82 (67%)
 Frame = -2

Query: 269 MTPVSSKLYTDDVSLLMVLIDTNPFFWNSVKSTIPFFKFLSHVLAFXXXXXXXXXXXXXX 90
           M    SKLY DDVSL++VL+DTNPFFW++  S++ F +FLSHVLAF              
Sbjct: 1   MASAPSKLYADDVSLVVVLVDTNPFFWSA--SSLSFSQFLSHVLAFLNAILTLNQLNQVV 58

Query: 89  XIATGHSYCDYVFDSSASQSQN 24
            IATG++ C+Y+FDSS+  +Q+
Sbjct: 59  VIATGYNSCNYIFDSSSDLNQS 80


>gb|EOY16261.1| Basal transcription factor complex subunit-related isoform 1
           [Theobroma cacao]
          Length = 296

 Score = 79.0 bits (193), Expect = 6e-13
 Identities = 40/82 (48%), Positives = 55/82 (67%)
 Frame = -2

Query: 269 MTPVSSKLYTDDVSLLMVLIDTNPFFWNSVKSTIPFFKFLSHVLAFXXXXXXXXXXXXXX 90
           M    SKLY DDVSL++VL+DTNPFFW++  S++ F +FLSHVLAF              
Sbjct: 1   MASAPSKLYADDVSLVVVLVDTNPFFWSA--SSLSFSQFLSHVLAFLNAILTLNQLNQVV 58

Query: 89  XIATGHSYCDYVFDSSASQSQN 24
            IATG++ C+Y+FDSS+  +Q+
Sbjct: 59  VIATGYNSCNYIFDSSSDLNQS 80


>ref|XP_004170865.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
           sativus]
          Length = 187

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 40/83 (48%), Positives = 52/83 (62%)
 Frame = -2

Query: 269 MTPVSSKLYTDDVSLLMVLIDTNPFFWNSVKSTIPFFKFLSHVLAFXXXXXXXXXXXXXX 90
           M    SKLY DDVSLL+VL+DTNPFFW++  S +PF KFLSHVLAF              
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWST--SALPFSKFLSHVLAFLNSILVLNQLNEVV 58

Query: 89  XIATGHSYCDYVFDSSASQSQNL 21
            I TG++ C Y+++SS+  +  L
Sbjct: 59  VIGTGYASCKYLYNSSSYSNHGL 81


>ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
           sativus]
          Length = 295

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 40/83 (48%), Positives = 52/83 (62%)
 Frame = -2

Query: 269 MTPVSSKLYTDDVSLLMVLIDTNPFFWNSVKSTIPFFKFLSHVLAFXXXXXXXXXXXXXX 90
           M    SKLY DDVSLL+VL+DTNPFFW++  S +PF KFLSHVLAF              
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWST--SALPFSKFLSHVLAFLNSILVLNQLNEVV 58

Query: 89  XIATGHSYCDYVFDSSASQSQNL 21
            I TG++ C Y+++SS+  +  L
Sbjct: 59  VIGTGYASCKYLYNSSSYSNHGL 81


>ref|XP_006305456.1| hypothetical protein CARUB_v10009867mg [Capsella rubella]
           gi|482574167|gb|EOA38354.1| hypothetical protein
           CARUB_v10009867mg [Capsella rubella]
          Length = 301

 Score = 75.9 bits (185), Expect = 5e-12
 Identities = 39/80 (48%), Positives = 54/80 (67%)
 Frame = -2

Query: 269 MTPVSSKLYTDDVSLLMVLIDTNPFFWNSVKSTIPFFKFLSHVLAFXXXXXXXXXXXXXX 90
           M  V+SK Y DDVSLL++L+DTNPFFW++  ++I F +FLSHVLAF              
Sbjct: 1   MPSVASKQYPDDVSLLVLLLDTNPFFWST--TSITFSQFLSHVLAFLNAVLGLNQLNQVV 58

Query: 89  XIATGHSYCDYVFDSSASQS 30
            IATG+S C+Y++DSS + +
Sbjct: 59  VIATGYSSCEYIYDSSLTSN 78


>ref|NP_564050.1| basal transcription factor complex subunit-related protein
           [Arabidopsis thaliana] gi|21537277|gb|AAM61618.1|
           unknown [Arabidopsis thaliana]
           gi|92856638|gb|ABE77412.1| At1g18340 [Arabidopsis
           thaliana] gi|332191584|gb|AEE29705.1| basal
           transcription factor complex subunit-related protein
           [Arabidopsis thaliana]
          Length = 301

 Score = 75.5 bits (184), Expect = 7e-12
 Identities = 38/80 (47%), Positives = 54/80 (67%)
 Frame = -2

Query: 269 MTPVSSKLYTDDVSLLMVLIDTNPFFWNSVKSTIPFFKFLSHVLAFXXXXXXXXXXXXXX 90
           M  ++SK Y+DDVSLL++L+DTNP FW++  ++I F +FLSHVLAF              
Sbjct: 1   MPAIASKQYSDDVSLLVLLLDTNPLFWST--TSITFSQFLSHVLAFLNAVLGLNQLNQVV 58

Query: 89  XIATGHSYCDYVFDSSASQS 30
            IATG+S CDY++DSS + +
Sbjct: 59  VIATGYSSCDYIYDSSLTSN 78