BLASTX nr result
ID: Rehmannia24_contig00014509
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00014509
(737 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis ... 107 5e-21
gb|ABA98491.1| retrotransposon protein, putative, unclassified [... 106 9e-21
gb|EEC81662.1| hypothetical protein OsI_25211 [Oryza sativa Indi... 106 9e-21
gb|EEE54600.1| hypothetical protein OsJ_01823 [Oryza sativa Japo... 105 2e-20
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo... 105 2e-20
gb|EAZ40645.1| hypothetical protein OsJ_25114 [Oryza sativa Japo... 101 2e-19
ref|NP_001060259.1| Os07g0613900 [Oryza sativa Japonica Group] g... 101 2e-19
ref|XP_006491602.1| PREDICTED: uncharacterized protein LOC102623... 100 4e-19
ref|XP_006491472.1| PREDICTED: uncharacterized protein LOC102626... 100 4e-19
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga... 100 7e-19
ref|XP_006493121.1| PREDICTED: putative ribonuclease H protein A... 96 7e-19
ref|XP_006464882.1| PREDICTED: putative ribonuclease H protein A... 96 8e-19
ref|XP_006493122.1| PREDICTED: putative ribonuclease H protein A... 96 8e-19
ref|XP_006483194.1| PREDICTED: putative ribonuclease H protein A... 98 3e-18
ref|XP_006487889.1| PREDICTED: uncharacterized protein LOC102617... 97 4e-18
ref|XP_006492478.1| PREDICTED: putative ribonuclease H protein A... 94 5e-18
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ... 96 1e-17
gb|AAP53315.2| retrotransposon protein, putative, unclassified [... 96 1e-17
gb|EEE57938.1| hypothetical protein OsJ_08648 [Oryza sativa Japo... 96 2e-17
gb|EEC74135.1| hypothetical protein OsI_09205 [Oryza sativa Indi... 96 2e-17
>ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|3184275|gb|AAC18922.1| putative reverse transcriptase
[Arabidopsis thaliana] gi|330250513|gb|AEC05607.1| RNase
H domain-containing protein [Arabidopsis thaliana]
Length = 365
Score = 107 bits (266), Expect = 5e-21
Identities = 70/200 (35%), Positives = 99/200 (49%), Gaps = 9/200 (4%)
Frame = +3
Query: 132 QVMWKLGIKNKIKHFLWRCNQSILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTR 311
Q +WKL + KIKHFLWRC L T+ +LR R ++ D ICQ C E ETI H+ F+C
Sbjct: 35 QAIWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPY 94
Query: 312 AKQVWKLANV----SWDIPDEGIEFREWWSNICTLEKTDL--GKDRIALSTYILWWLWKT 473
+ VW+ AN+ W P F + + + L KT DR L +I+W LWK+
Sbjct: 95 TQSVWRSANIIIGNQWGPPS---SFEDNLNRLIQLSKTQTTNSLDRF-LPFWIMWRLWKS 150
Query: 474 RNLWMFQQ-CRMPDKELVDLAYSEWNEFNHLGTKKGKKDSTEATNLQ--SENNDLFEFPE 644
RN+++FQQ C+ PD E +KG +D+TE N +EN ++
Sbjct: 151 RNVFLFQQKCQSPDYE----------------ARKGIQDATEWLNANETTENTNVHVATN 194
Query: 645 V*QIEISVSAVWREDRKVGW 704
Q S+ W + GW
Sbjct: 195 PIQTSRRDSSQWNPPPE-GW 213
>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1621
Score = 106 bits (264), Expect = 9e-21
Identities = 76/254 (29%), Positives = 110/254 (43%), Gaps = 15/254 (5%)
Frame = +3
Query: 21 KGQFSVNSAYKLLQELKE--INKGSPGTSDGNKAEKRKWQVMWKLGIKNKIKHFLWRCNQ 194
+G F+V SAYK+ +E++ G PG S+ + W+ +WKLG+ KIKHFLWR
Sbjct: 1264 RGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCH 1323
Query: 195 SILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQVWKLANVSWDIPDEGIEF 374
+ L L RGM+VD C MCG E H+FF C K+VW+ N+ E
Sbjct: 1324 NTLALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQALNLE--------EL 1375
Query: 375 REWWSNICTLEKTDLGKDRIALSTY------------ILWWLWKTRNLWMFQQCRMPDKE 518
R LE+ GK+ + S Y LW WK RN E
Sbjct: 1376 RS------MLEQQTSGKN-VLQSIYCRPENERTSAIVCLWQWWKERNEVREGGIPRSPAE 1428
Query: 519 LVDLAYSEWNEFNHLGTKKGKKDSTEATNLQSENNDLFEFPEV*QIEISVSAVWREDRKV 698
L L S+ EF + K+ + E ++ P + ++I+ + + K
Sbjct: 1429 LSHLIMSQAGEFVRMNVKEKSPRTGECA--------VWRRPPLNFVKINTDGAYSSNMKQ 1480
Query: 699 -GWGCIAKSQVGKI 737
GWG + K Q G +
Sbjct: 1481 GGWGFVIKDQTGAV 1494
>gb|EEC81662.1| hypothetical protein OsI_25211 [Oryza sativa Indica Group]
Length = 561
Score = 106 bits (264), Expect = 9e-21
Identities = 71/243 (29%), Positives = 108/243 (44%), Gaps = 4/243 (1%)
Frame = +3
Query: 21 KGQFSVNSAYKLLQELKE--INKGSPGTSDGNKAEKRKWQVMWKLGIKNKIKHFLWRCNQ 194
+G F+V SAYK+ +E++ G PG S+ + W+ +WKLG+ KIKHFLWR
Sbjct: 204 RGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCH 263
Query: 195 SILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQVWKLANVSWDIPDEGIEF 374
+ L L RGM+VD C MCG E H+FF C K+VW+ N + +
Sbjct: 264 NTLALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQALN----LEELRSML 319
Query: 375 REWWSNICTLEKTDLGKDRIALSTYI-LWWLWKTRNLWMFQQCRMPDKELVDLAYSEWNE 551
++ S L+ + S + LW WK RN EL L S+ E
Sbjct: 320 KQQTSGKNVLQSIYCRPENERTSAIVCLWQWWKERNEVREGGIPRSPAELSHLIMSQAGE 379
Query: 552 FNHLGTKKGKKDSTEATNLQSENNDLFEFPEV*QIEISVSAVWREDRKV-GWGCIAKSQV 728
F + K+ + E ++ P + ++I+ + + K GWG + K Q
Sbjct: 380 FVRMNVKEKSPRTGECA--------VWRRPPLNFVKINTDGAYSSNMKQGGWGFVIKDQT 431
Query: 729 GKI 737
G +
Sbjct: 432 GAV 434
>gb|EEE54600.1| hypothetical protein OsJ_01823 [Oryza sativa Japonica Group]
Length = 639
Score = 105 bits (262), Expect = 2e-20
Identities = 75/254 (29%), Positives = 111/254 (43%), Gaps = 15/254 (5%)
Frame = +3
Query: 21 KGQFSVNSAYKLLQELKE--INKGSPGTSDGNKAEKRKWQVMWKLGIKNKIKHFLWRCNQ 194
+G F+V SAYK+ +E++ G PG S+ + W+ +WKLG+ KIKHFLWR
Sbjct: 204 RGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCH 263
Query: 195 SILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQVWKLANVSWDIPDEGIEF 374
+ L L+ RGM+VD C MCG E H+FF C K+VW+ N+ E
Sbjct: 264 NTLALRANLQHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQALNLE--------EL 315
Query: 375 REWWSNICTLEKTDLGKDRIALSTY------------ILWWLWKTRNLWMFQQCRMPDKE 518
R LE+ GK+ + S Y LW WK RN E
Sbjct: 316 RS------MLEQQTSGKN-VLQSIYCRPEIERTSAIVCLWQWWKERNEVREGGIPRSPAE 368
Query: 519 LVDLAYSEWNEFNHLGTKKGKKDSTEATNLQSENNDLFEFPEV*QIEISVSAVWREDRKV 698
L L S+ EF + K+ + E ++ P + ++I+ + + K
Sbjct: 369 LSHLIMSQAGEFVRMNVKEKSPRTGECA--------VWRRPPLNFVKINTDGAYSSNMKQ 420
Query: 699 -GWGCIAKSQVGKI 737
GWG + + Q G +
Sbjct: 421 GGWGFVIRDQTGAV 434
>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
Length = 1594
Score = 105 bits (262), Expect = 2e-20
Identities = 75/254 (29%), Positives = 111/254 (43%), Gaps = 15/254 (5%)
Frame = +3
Query: 21 KGQFSVNSAYKLLQELKE--INKGSPGTSDGNKAEKRKWQVMWKLGIKNKIKHFLWRCNQ 194
+G F+V SAYK+ +E++ G PG S+ + W+ +WKLG+ KIKHFLWR
Sbjct: 1237 RGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCH 1296
Query: 195 SILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQVWKLANVSWDIPDEGIEF 374
+ L L+ RGM+VD C MCG E H+FF C K+VW+ N+ E
Sbjct: 1297 NTLALRANLQHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQALNLE--------EL 1348
Query: 375 REWWSNICTLEKTDLGKDRIALSTY------------ILWWLWKTRNLWMFQQCRMPDKE 518
R LE+ GK+ + S Y LW WK RN E
Sbjct: 1349 RS------MLEQQTSGKN-VLQSIYCRPEIERTSAIVCLWQWWKERNEVREGGIPRSPAE 1401
Query: 519 LVDLAYSEWNEFNHLGTKKGKKDSTEATNLQSENNDLFEFPEV*QIEISVSAVWREDRKV 698
L L S+ EF + K+ + E ++ P + ++I+ + + K
Sbjct: 1402 LSHLIMSQAGEFVRMNVKEKSPRTGECA--------VWRRPPLNFVKINTDGAYSSNMKQ 1453
Query: 699 -GWGCIAKSQVGKI 737
GWG + + Q G +
Sbjct: 1454 GGWGFVIRDQTGAV 1467
>gb|EAZ40645.1| hypothetical protein OsJ_25114 [Oryza sativa Japonica Group]
Length = 560
Score = 101 bits (252), Expect = 2e-19
Identities = 71/243 (29%), Positives = 118/243 (48%), Gaps = 3/243 (1%)
Frame = +3
Query: 18 QKGQFSVNSAYKLLQ--ELKEINKGSPGTSDGNKAEKRKWQVMWKLGIKNKIKHFLWRCN 191
+KG FSV SAYK+ + EL+ +GS G S+G+ + W+ +WK+ + K+KHF+WR +
Sbjct: 245 EKGLFSVKSAYKVQRDGELQRRKRGSAGLSNGSTEREMYWKKVWKMQLPGKVKHFIWRFS 304
Query: 192 QSILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQVWKLANVSWDIPDEGIE 371
+IL + L++RGM++D C +C E H+FF C + K+VW+ N+ + E E
Sbjct: 305 HNILALRVNLQQRGMDLDSRCIICNRMNEDAGHLFFKCKKVKKVWQENNLE-ILRQELAE 363
Query: 372 FREWWSNICTLEKTDLGKDRIALSTYILWWLWKTRNLWMFQQCRMPDKELVDLAYSEWNE 551
R + T+ + I L++ LW W RN + EL + + E
Sbjct: 364 KRSGREVMETV--FNRPAKEILLASITLWQWWSERNRVQEGERGRSPSELGFIIAALAEE 421
Query: 552 FNHLGTKKGKKDSTEATNLQSENNDLFEFPEV*QIEISVSAVWRE-DRKVGWGCIAKSQV 728
+ K KKDS A + N+ + + ++I+ + R GWG +
Sbjct: 422 Y----MKLNKKDSKRAPS----RNEKWSRTDQGVMKINTDGAFDPFTRTGGWGFAIRDHS 473
Query: 729 GKI 737
GK+
Sbjct: 474 GKV 476
>ref|NP_001060259.1| Os07g0613900 [Oryza sativa Japonica Group]
gi|113611795|dbj|BAF22173.1| Os07g0613900 [Oryza sativa
Japonica Group]
Length = 1453
Score = 101 bits (252), Expect = 2e-19
Identities = 71/243 (29%), Positives = 118/243 (48%), Gaps = 3/243 (1%)
Frame = +3
Query: 18 QKGQFSVNSAYKLLQ--ELKEINKGSPGTSDGNKAEKRKWQVMWKLGIKNKIKHFLWRCN 191
+KG FSV SAYK+ + EL+ +GS G S+G+ + W+ +WK+ + K+KHF+WR +
Sbjct: 1138 EKGLFSVKSAYKVQRDGELQRRKRGSAGLSNGSTEREMYWKKVWKMQLPGKVKHFIWRFS 1197
Query: 192 QSILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQVWKLANVSWDIPDEGIE 371
+IL + L++RGM++D C +C E H+FF C + K+VW+ N+ + E E
Sbjct: 1198 HNILALRVNLQQRGMDLDSRCIICNRMNEDAGHLFFKCKKVKKVWQENNLE-ILRQELAE 1256
Query: 372 FREWWSNICTLEKTDLGKDRIALSTYILWWLWKTRNLWMFQQCRMPDKELVDLAYSEWNE 551
R + T+ + I L++ LW W RN + EL + + E
Sbjct: 1257 KRSGREVMETV--FNRPAKEILLASITLWQWWSERNRVQEGERGRSPSELGFIIAALAEE 1314
Query: 552 FNHLGTKKGKKDSTEATNLQSENNDLFEFPEV*QIEISVSAVWRE-DRKVGWGCIAKSQV 728
+ K KKDS A + N+ + + ++I+ + R GWG +
Sbjct: 1315 Y----MKLNKKDSKRAPS----RNEKWSRTDQGVMKINTDGAFDPFTRTGGWGFAIRDHS 1366
Query: 729 GKI 737
GK+
Sbjct: 1367 GKV 1369
>ref|XP_006491602.1| PREDICTED: uncharacterized protein LOC102623801 [Citrus sinensis]
Length = 441
Score = 100 bits (250), Expect = 4e-19
Identities = 69/240 (28%), Positives = 126/240 (52%), Gaps = 2/240 (0%)
Frame = +3
Query: 24 GQFSVNSAYKLLQELKEINKGSPGTSDGNKAEKRKWQVMWKLGIKNKIKHFLWRCNQSIL 203
GQ+SV S Y++ +LK N SP +SD + ++ W V+W + KIK F+WR +++L
Sbjct: 92 GQYSVKSGYQIALKLKCPN--SPCSSDSSLSQ---WNVIWAAELPEKIKIFMWRAVKNLL 146
Query: 204 PTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQVWKLANVSWDIPDEGIEFREW 383
PT+ L RR + IC+ CG + E ++H C AK+VW+ A + +I E + ++
Sbjct: 147 PTTSNLWRRKIVGSPICRRCGVKNEDVIHALLDCKVAKKVWRNAGCAEEI--EKLVQQDL 204
Query: 384 WSNICTLEKTDLGKDRIALSTYILWWLWKTRNLWMFQQCRMPDKELVDLAYSEWNEFNHL 563
+ + +++ GK + L + W +W +RNL++F+ R + + A + + F +
Sbjct: 205 MAVLVEIQRKK-GKKELELIVVLCWTIWYSRNLFIFENKREDSQLSIARAEANLDSFRRI 263
Query: 564 GTKKGKKDSTEATNLQSEN-NDLFEFPEV*QIEISV-SAVWREDRKVGWGCIAKSQVGKI 737
KK S++ Q N ++ P +I+V +AV +D+ G G I ++ G++
Sbjct: 264 -----KKPSSKILEKQQRNRKQVWNPPPCGWFKINVDAAVNVKDQIAGLGVIIRNSNGEV 318
>ref|XP_006491472.1| PREDICTED: uncharacterized protein LOC102626455 [Citrus sinensis]
Length = 1452
Score = 100 bits (249), Expect(2) = 4e-19
Identities = 69/249 (27%), Positives = 116/249 (46%), Gaps = 9/249 (3%)
Frame = +3
Query: 18 QKGQFSVNSAYKLLQELKEINKGSPGTSDGNKAEKRKWQVMWKLGIKNKIKHFLWRCNQS 197
+KG++SV S Y+L +N+ P + + + R W++ W L + K+K F+WR ++
Sbjct: 1101 KKGEYSVKSGYQLA-----LNQNFPNEPESSNSSSRLWKIPWMLDLPEKVKIFMWRALKN 1155
Query: 198 ILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQVWKLAN-VSWDIPDEGIEF 374
ILPT+ L +R + ICQ C + ET+ HV C A+++W LA + D +F
Sbjct: 1156 ILPTAENLWKRRSLQEPICQRCKLQVETVSHVLIECKAARKIWDLAPLIVQPSKDHNQDF 1215
Query: 375 ----REWWSNICTLEKTDLGKDRIALSTYILWWLWKTRNLWMFQQCRMPDKEL---VDLA 533
+E WS T E L W +W RN ++F+ + + L D
Sbjct: 1216 FSAIQEMWSRSSTAE--------AELMIVYCWVIWSARNKFIFEGKKSDSRFLAAKADSV 1267
Query: 534 YSEWNEFNHLGTKKGKKDSTEATNLQSENNDLFEFPEV*QIEISV-SAVWREDRKVGWGC 710
+ + G G KD + + ++ P ++++V +AV +D+KVG G
Sbjct: 1268 LKAYQRVSKPGNVHGAKD-------RGIDQQKWKPPSQNVLKLNVDAAVSTKDQKVGLGA 1320
Query: 711 IAKSQVGKI 737
I + GKI
Sbjct: 1321 IVRDAEGKI 1329
Score = 20.8 bits (42), Expect(2) = 4e-19
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 1 VWWHHDKKG 27
V WH DKKG
Sbjct: 1095 VLWHFDKKG 1103
>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1369
Score = 100 bits (248), Expect = 7e-19
Identities = 68/241 (28%), Positives = 113/241 (46%), Gaps = 1/241 (0%)
Frame = +3
Query: 18 QKGQFSVNSAYKLLQELKEINKGSPGTSDGNKAEKRKWQVMWKLGIKNKIKHFLWRCNQS 197
+ GQF+V SAY EL E K P TS G + WQ +WK I K+K F W+ +
Sbjct: 1018 KNGQFTVRSAY--YHELLEDRKTGPSTSRGPNL--KLWQKIWKAKIPPKVKLFSWKAIHN 1073
Query: 198 ILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQVWKLANVSWDIPD-EGIEF 374
L +R+RGMN+D C CGE+ ET H+ + C + + W ++ + + E F
Sbjct: 1074 GLAVYTNMRKRGMNIDGACPRCGEKEETTEHLIWGCDESSRAWYISPLRIHTGNIEAGSF 1133
Query: 375 REWWSNICTLEKTDLGKDRIALSTYILWWLWKTRNLWMFQQCRMPDKELVDLAYSEWNEF 554
R W + +L T + AL I W +W RN W+F++ ++ +E+V+ A EF
Sbjct: 1134 RIW---VESLLDTHKDTEWWALFWMICWNIWLGRNKWVFEKKKLAFQEVVERAVRGVMEF 1190
Query: 555 NHLGTKKGKKDSTEATNLQSENNDLFEFPEV*QIEISVSAVWREDRKVGWGCIAKSQVGK 734
+ T + + + + P V ++++V A + +G G + + G
Sbjct: 1191 EE------ECAHTSPVETLNTHENGWSVPPVGMVKLNVDAAVFKHVGIGMGGVVRDAEGD 1244
Query: 735 I 737
+
Sbjct: 1245 V 1245
>ref|XP_006493121.1| PREDICTED: putative ribonuclease H protein At1g65750-like isoform X1
[Citrus sinensis]
Length = 968
Score = 96.3 bits (238), Expect(2) = 7e-19
Identities = 66/240 (27%), Positives = 120/240 (50%), Gaps = 1/240 (0%)
Frame = +3
Query: 18 QKGQFSVNSAYKLLQELKEINKGSPGTSDGNKAEKRKWQVMWKLGIKNKIKHFLWRCNQS 197
+KG +SV S Y+L ++K N+ S D N W +W L I K+K F+WR
Sbjct: 621 KKGNYSVKSGYQLALQMKFPNRPSSSKEDNNS-----WNSIWYLQIPEKVKIFMWRATND 675
Query: 198 ILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQVWKLANVSWDIPDEGIEFR 377
+LPTS L +R + CQ C RETI H F C ++++WKL ++ + ++ +
Sbjct: 676 LLPTSENLWKRRILQTPWCQRCRSHRETIFHSLFDCKASRKIWKLTTFEEEV--KALKCK 733
Query: 378 EWWSNICTLEKTDLGKDRIALSTYILWWLWKTRNLWMFQQCRMPDKELVDLAYSEWNEFN 557
+ S + L K + L + W +W +RNL++FQ + D +L +A +E +
Sbjct: 734 DVLSLLLALADR-RSKTEMELIVAVCWSIWHSRNLFIFQN-KKEDFQL-SVAGAEAIVQS 790
Query: 558 HLGTKKGKKDSTEATNLQSENNDLFEFPEV*QIEISV-SAVWREDRKVGWGCIAKSQVGK 734
+ + + + +L S + ++ P +++V +A+ E+++VG G + ++ GK
Sbjct: 791 YKRIQMPQLQAFSDQDLVSHKH--WKCPPAGWFKVNVDAAIKLENQRVGLGIVIRNSEGK 848
Score = 24.3 bits (51), Expect(2) = 7e-19
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1
Query: 1 VWWHHDKKGN 30
V WH+DKKGN
Sbjct: 615 VLWHYDKKGN 624
>ref|XP_006464882.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 769
Score = 96.3 bits (238), Expect(2) = 8e-19
Identities = 66/240 (27%), Positives = 120/240 (50%), Gaps = 1/240 (0%)
Frame = +3
Query: 18 QKGQFSVNSAYKLLQELKEINKGSPGTSDGNKAEKRKWQVMWKLGIKNKIKHFLWRCNQS 197
+KG +SV S Y+L ++K N+ S D N W +W L I K+K F+WR
Sbjct: 418 KKGNYSVKSGYQLALQMKFPNRPSSSKEDNNS-----WNSIWYLQIPEKVKIFMWRATND 472
Query: 198 ILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQVWKLANVSWDIPDEGIEFR 377
+LPTS L +R + CQ C RETI H F C ++++WKL ++ + ++ +
Sbjct: 473 LLPTSENLWKRRILQTPWCQRCRSHRETIFHSLFDCKASRKIWKLTTFEEEV--KALKCK 530
Query: 378 EWWSNICTLEKTDLGKDRIALSTYILWWLWKTRNLWMFQQCRMPDKELVDLAYSEWNEFN 557
+ S + L K + L + W +W +RNL++FQ + D +L +A +E +
Sbjct: 531 DVLSLLLALADR-RSKTEMELIVAVCWSIWHSRNLFIFQN-KKEDFQL-SVAGAEAIVQS 587
Query: 558 HLGTKKGKKDSTEATNLQSENNDLFEFPEV*QIEISV-SAVWREDRKVGWGCIAKSQVGK 734
+ + + + +L S + ++ P +++V +A+ E+++VG G + ++ GK
Sbjct: 588 YKRIQMPQLQAFSNQDLVSHKH--WKCPPAGWFKVNVDAAIKLENQRVGLGIVIRNSEGK 645
Score = 24.3 bits (51), Expect(2) = 8e-19
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1
Query: 1 VWWHHDKKGN 30
V WH+DKKGN
Sbjct: 412 VLWHYDKKGN 421
>ref|XP_006493122.1| PREDICTED: putative ribonuclease H protein At1g65750-like isoform X2
[Citrus sinensis]
Length = 765
Score = 96.3 bits (238), Expect(2) = 8e-19
Identities = 66/240 (27%), Positives = 120/240 (50%), Gaps = 1/240 (0%)
Frame = +3
Query: 18 QKGQFSVNSAYKLLQELKEINKGSPGTSDGNKAEKRKWQVMWKLGIKNKIKHFLWRCNQS 197
+KG +SV S Y+L ++K N+ S D N W +W L I K+K F+WR
Sbjct: 418 KKGNYSVKSGYQLALQMKFPNRPSSSKEDNNS-----WNSIWYLQIPEKVKIFMWRATND 472
Query: 198 ILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQVWKLANVSWDIPDEGIEFR 377
+LPTS L +R + CQ C RETI H F C ++++WKL ++ + ++ +
Sbjct: 473 LLPTSENLWKRRILQTPWCQRCRSHRETIFHSLFDCKASRKIWKLTTFEEEV--KALKCK 530
Query: 378 EWWSNICTLEKTDLGKDRIALSTYILWWLWKTRNLWMFQQCRMPDKELVDLAYSEWNEFN 557
+ S + L K + L + W +W +RNL++FQ + D +L +A +E +
Sbjct: 531 DVLSLLLALADR-RSKTEMELIVAVCWSIWHSRNLFIFQN-KKEDFQL-SVAGAEAIVQS 587
Query: 558 HLGTKKGKKDSTEATNLQSENNDLFEFPEV*QIEISV-SAVWREDRKVGWGCIAKSQVGK 734
+ + + + +L S + ++ P +++V +A+ E+++VG G + ++ GK
Sbjct: 588 YKRIQMPQLQAFSDQDLVSHKH--WKCPPAGWFKVNVDAAIKLENQRVGLGIVIRNSEGK 645
Score = 24.3 bits (51), Expect(2) = 8e-19
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1
Query: 1 VWWHHDKKGN 30
V WH+DKKGN
Sbjct: 412 VLWHYDKKGN 421
>ref|XP_006483194.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 765
Score = 97.8 bits (242), Expect(2) = 3e-18
Identities = 68/249 (27%), Positives = 115/249 (46%), Gaps = 9/249 (3%)
Frame = +3
Query: 18 QKGQFSVNSAYKLLQELKEINKGSPGTSDGNKAEKRKWQVMWKLGIKNKIKHFLWRCNQS 197
+KG++SV S Y+L +N+ P + + + R W++ W L + K+K F+WR ++
Sbjct: 414 KKGEYSVKSGYQLA-----LNQNFPNEPESSNSSSRLWKIPWMLDLPEKVKIFMWRALKN 468
Query: 198 ILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQVWKLAN-VSWDIPDEGIEF 374
ILPT+ L +R + ICQ C + ET+ HV C A+++W LA + D +F
Sbjct: 469 ILPTAENLWKRRSLQEPICQRCKLQVETVSHVLIECKAARKIWDLAPLIVQPSKDHNQDF 528
Query: 375 ----REWWSNICTLEKTDLGKDRIALSTYILWWLWKTRNLWMFQQCRMPDKEL---VDLA 533
+E WS T E L W +W RN ++F+ + + L D
Sbjct: 529 FSAIQEMWSRSSTAE--------AELMIVYCWVIWSARNKFIFEGKKSDSRFLAAKADSV 580
Query: 534 YSEWNEFNHLGTKKGKKDSTEATNLQSENNDLFEFPEV*QIEISV-SAVWREDRKVGWGC 710
+ + G G KD + + ++ P ++++V +AV + +KVG G
Sbjct: 581 LKAYQRVSKPGNVHGAKD-------RGIDQQKWKPPSQNVLKLNVDAAVSTKXQKVGLGA 633
Query: 711 IAKSQVGKI 737
I + GKI
Sbjct: 634 IVRDAEGKI 642
Score = 20.8 bits (42), Expect(2) = 3e-18
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 1 VWWHHDKKG 27
V WH DKKG
Sbjct: 408 VLWHFDKKG 416
>ref|XP_006487889.1| PREDICTED: uncharacterized protein LOC102617714 [Citrus sinensis]
Length = 1238
Score = 97.4 bits (241), Expect = 4e-18
Identities = 68/240 (28%), Positives = 126/240 (52%), Gaps = 2/240 (0%)
Frame = +3
Query: 24 GQFSVNSAYKLLQELKEINKGSPGTSDGNKAEKRKWQVMWKLGIKNKIKHFLWRCNQSIL 203
GQ+SV S Y++ +LK N SP +SD + ++ W V+W + KIK F+WR +++L
Sbjct: 889 GQYSVKSGYQIALKLKCPN--SPCSSDSSLSQ---WNVIWAAELPEKIKIFMWRAVKNLL 943
Query: 204 PTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQVWKLANVSWDIPDEGIEFREW 383
PT+ L RR + IC+ CG + E ++H C AK+VW+ A + +I E + ++
Sbjct: 944 PTASNLWRRKIVGSPICRRCGVKNEDVIHALLDCKVAKKVWRNAGCAEEI--EKLVQQDL 1001
Query: 384 WSNICTLEKTDLGKDRIALSTYILWWLWKTRNLWMFQQCRMPDKELVDLAYSEWNEFNHL 563
+ + +++ GK + L + W +W ++NL++F+ R + + A + + F
Sbjct: 1002 MAVLVEIQRKK-GKKELELIVVLCWTIWYSQNLFIFENKREDSQLSIARAEANMDSF--- 1057
Query: 564 GTKKGKKDSTEATNLQSEN-NDLFEFPEV*QIEISV-SAVWREDRKVGWGCIAKSQVGKI 737
K+ KK ++ Q N ++ P +I+V +AV +D+ G G I ++ G++
Sbjct: 1058 --KRIKKPFSKILEKQQRNRKQVWNPPPSGWFKINVDAAVNVKDQIAGLGVIIRNSNGEV 1115
>ref|XP_006492478.1| PREDICTED: putative ribonuclease H protein At1g65750-like isoform
X1 [Citrus sinensis] gi|568879016|ref|XP_006492479.1|
PREDICTED: putative ribonuclease H protein
At1g65750-like isoform X2 [Citrus sinensis]
Length = 320
Score = 94.4 bits (233), Expect(2) = 5e-18
Identities = 52/160 (32%), Positives = 90/160 (56%)
Frame = +3
Query: 18 QKGQFSVNSAYKLLQELKEINKGSPGTSDGNKAEKRKWQVMWKLGIKNKIKHFLWRCNQS 197
+KG +SV S Y+L +K NK SD + WQ +WKLG K+K FLWR ++
Sbjct: 20 KKGNYSVKSGYQLAFTIKFPNKPCYSNSDF-----QGWQTIWKLGNPEKVKIFLWRTTKN 74
Query: 198 ILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQVWKLANVSWDIPDEGIEFR 377
+LPT L +R + + ICQ+C +E E I H AK++W+ +++ ++ +E I+
Sbjct: 75 LLPTMENLWKRKVVQEPICQICKKELENISHALLDYKLAKKMWRHTHIAAEVQNEAIQ-- 132
Query: 378 EWWSNICTLEKTDLGKDRIALSTYILWWLWKTRNLWMFQQ 497
++ S + +L K L I L++++ W +W RN ++++
Sbjct: 133 DFLSMLQSLTK-KLTTREIELASFVWWGVWNARNKVIYER 171
Score = 23.5 bits (49), Expect(2) = 5e-18
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1
Query: 7 WHHDKKGN 30
WH+DKKGN
Sbjct: 16 WHYDKKGN 23
>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1509
Score = 95.9 bits (237), Expect = 1e-17
Identities = 59/167 (35%), Positives = 79/167 (47%), Gaps = 14/167 (8%)
Frame = +3
Query: 21 KGQFSVNSAYKLLQELKE--INKGSPGTSDGNKAEKRKWQVMWKLGIKNKIKHFLWRCNQ 194
+G F+V SAYK+ +E++ G PG S+ + W+ +WKLG+ KIKHFLWR
Sbjct: 1209 RGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCH 1268
Query: 195 SILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQVWKLANVSWDIPDEGIEF 374
+ L L RGM+VD C MCG E H+FF C K+VW+ N+ E
Sbjct: 1269 NTLALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQALNLE--------EL 1320
Query: 375 REWWSNICTLEKTDLGKDRIALSTY------------ILWWLWKTRN 479
R LE+ GK+ + S Y LW WK RN
Sbjct: 1321 RS------MLEQQTSGKN-VLQSIYCRPENERTSAIVCLWQWWKERN 1360
>gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1505
Score = 95.9 bits (237), Expect = 1e-17
Identities = 59/167 (35%), Positives = 79/167 (47%), Gaps = 14/167 (8%)
Frame = +3
Query: 21 KGQFSVNSAYKLLQELKE--INKGSPGTSDGNKAEKRKWQVMWKLGIKNKIKHFLWRCNQ 194
+G F+V SAYK+ +E++ G PG S+ + W+ +WKLG+ KIKHFLWR
Sbjct: 1205 RGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCH 1264
Query: 195 SILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQVWKLANVSWDIPDEGIEF 374
+ L L RGM+VD C MCG E H+FF C K+VW+ N+ E
Sbjct: 1265 NTLALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQALNLE--------EL 1316
Query: 375 REWWSNICTLEKTDLGKDRIALSTY------------ILWWLWKTRN 479
R LE+ GK+ + S Y LW WK RN
Sbjct: 1317 RS------MLEQQTSGKN-VLQSIYCRPENERTSAIVCLWQWWKERN 1356
>gb|EEE57938.1| hypothetical protein OsJ_08648 [Oryza sativa Japonica Group]
Length = 521
Score = 95.5 bits (236), Expect = 2e-17
Identities = 46/108 (42%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Frame = +3
Query: 21 KGQFSVNSAYKLLQELKE--INKGSPGTSDGNKAEKRKWQVMWKLGIKNKIKHFLWRCNQ 194
+G FSV SAYK+ +E++ G PG S+G + W+ +WKLG+ KIKHFLWR
Sbjct: 116 RGCFSVKSAYKVQREMERRASRNGCPGVSNGESGDDDFWKKLWKLGVPGKIKHFLWRMCH 175
Query: 195 SILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQVWKLAN 338
+ L L RGM+VD C MCG+ E H+ F C K+ WK N
Sbjct: 176 NTLALRANLHHRGMDVDTRCVMCGQYNEDAGHLLFKCKPVKKWWKERN 223
>gb|EEC74135.1| hypothetical protein OsI_09205 [Oryza sativa Indica Group]
Length = 521
Score = 95.5 bits (236), Expect = 2e-17
Identities = 46/108 (42%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Frame = +3
Query: 21 KGQFSVNSAYKLLQELKE--INKGSPGTSDGNKAEKRKWQVMWKLGIKNKIKHFLWRCNQ 194
+G FSV SAYK+ +E++ G PG S+G + W+ +WKLG+ KIKHFLWR
Sbjct: 116 RGCFSVKSAYKVQREMERRASRNGCPGVSNGESGDDDFWKKLWKLGVPGKIKHFLWRMCH 175
Query: 195 SILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQVWKLAN 338
+ L L RGM+VD C MCG+ E H+ F C K+ WK N
Sbjct: 176 NTLALRANLHHRGMDVDTRCVMCGQYNEDAGHLLFKCKPVKKWWKERN 223