BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00013129
         (841 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     129   2e-27
gb|EOY05822.1| Uncharacterized protein TCM_020722 [Theobroma cacao]   127   5e-27
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   126   8e-27
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        126   8e-27
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                125   1e-26
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   123   7e-26
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...   123   7e-26
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   120   5e-25
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   120   5e-25
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     120   8e-25
emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera]   120   8e-25
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   120   8e-25
gb|EOY01950.1| Uncharacterized protein TCM_011728 [Theobroma cacao]   119   1e-24
gb|EOY07366.1| Adenine nucleotide alpha hydrolases-like superfam...   118   2e-24
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   117   4e-24
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   117   4e-24
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   117   4e-24
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           117   5e-24
gb|EOY27458.1| Leucine-rich repeat transmembrane protein kinase ...   116   1e-23
gb|EOX97575.1| Uncharacterized protein TCM_006559 [Theobroma cacao]   108   8e-23

>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  129 bits (323), Expect = 2e-27
 Identities = 91/268 (33%), Positives = 131/268 (48%), Gaps = 24/268 (8%)
 Frame = +3

Query: 60  ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKANQDEGHES---ALVARG 230
           ++LL S+P SY +   T+LY +DTL L+ +  +L + EK KK    EG  S    LV RG
Sbjct: 54  LILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRG 113

Query: 231 M-------NRNGRKXXXXXXXXXXXXXXXXXVLYA------IVITWRV------TLKGIV 353
                   N++  K                   Y       I   W++      T K I 
Sbjct: 114 RQQEKNTNNKSRDKSSSIYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTRKYIP 173

Query: 354 LGERRMIPVTVAVIAAEDGDVYTVSASMDTS-SRDGWILDSGCVMHVCSRRDYFDSLQLK 530
            G++       AV+  E  D   + A    + + D WILD+ C  H+C  RD+F + +  
Sbjct: 174 KGKKEE-EGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEAV 232

Query: 531 RAGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGGVAYVPKMRRNLISLSQLDSKGCEYS 710
           + GT+ +GD + C V G G V+IKM DG    L  V ++P ++R+LISL  LD KG +YS
Sbjct: 233 QGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYS 292

Query: 711 AGGEVLKATRGREVLMVGE-KYRNLYRL 791
            G  +LK T+G  V+M  + KY NLY L
Sbjct: 293 GGDGILKVTKGSLVVMKADIKYANLYHL 320


>gb|EOY05822.1| Uncharacterized protein TCM_020722 [Theobroma cacao]
          Length = 218

 Score =  127 bits (319), Expect = 5e-27
 Identities = 73/134 (54%), Positives = 86/134 (64%)
 Frame = +3

Query: 390 VIAAEDGDVYTVSASMDTSSRDGWILDSGCVMHVCSRRDYFDSLQLKRAGTLSLGDGSAC 569
           V    D DV T+S  MD +    W LDS    H+C ++D FD LQ   AG L+LG+ S  
Sbjct: 28  VAKGNDCDVLTISEDMDANF--DWYLDSASATHICYQKDCFDLLQEGMAGNLTLGNKSIV 85

Query: 570 RVMGFGVVEIKMGDGVDHILGGVAYVPKMRRNLISLSQLDSKGCEYSAGGEVLKATRGRE 749
           +VMG  VV+IKM DGV   LGGVAYVPKMR+NLISLS LDSKG  YSA   V+K T+G  
Sbjct: 86  KVMGLAVVKIKMFDGVVLSLGGVAYVPKMRKNLISLSLLDSKGYGYSACDGVVKVTQGDM 145

Query: 750 VLMVGEKYRNLYRL 791
           VLM G  +  LYRL
Sbjct: 146 VLMRGNLHNGLYRL 159


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  126 bits (317), Expect = 8e-27
 Identities = 87/268 (32%), Positives = 128/268 (47%), Gaps = 24/268 (8%)
 Frame = +3

Query: 60  ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKANQDEGHES---ALVARG 230
           ++LL S+P SY +   T+LY +DTL L+ +  +L + EK KK    EG  S   +LV RG
Sbjct: 87  LILLCSLPSSYANFRDTILYSRDTLTLQEVYDALHAKEKMKKMVPSEGSNSQPESLVVRG 146

Query: 231 M-------NRNGRKXXXXXXXXXXXXXXXXXVLYA------IVITWRVTLKGIVLG---- 359
                   N++  K                   Y       I   W++  K    G    
Sbjct: 147 RQQEKNTDNKSRDKSSSGYRGRSKSRGRYKSCKYCKRGGHDISDCWKLQNKEKHKGNYKP 206

Query: 360 ---ERRMIPVTVAVIAAEDGDVYTVSASMDTSSRDGWILDSGCVMHVCSRRDYFDSLQLK 530
              +       VA     D ++    A    +S D W+LD+GC  H+C  RD+F + +  
Sbjct: 207 KGKQEEQGKAAVATDNKPDAELLVAYAGCVQTS-DEWLLDTGCTYHMCPNRDWFTTYEPV 265

Query: 531 RAGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGGVAYVPKMRRNLISLSQLDSKGCEYS 710
           + G + +GD + C+V G G ++IKM DG    L  V ++P ++RNLISLS LD KG  YS
Sbjct: 266 QGGNVLMGDNTPCKVAGVGTIQIKMFDGCIRTLSDVRHIPSLKRNLISLSTLDRKGYRYS 325

Query: 711 AGGEVLKATRGREVLMVGE-KYRNLYRL 791
            G  +LK T+G  V+M  + K  +LY L
Sbjct: 326 GGDGILKVTKGSLVVMKADIKNADLYHL 353


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  126 bits (317), Expect = 8e-27
 Identities = 88/267 (32%), Positives = 129/267 (48%), Gaps = 23/267 (8%)
 Frame = +3

Query: 60  ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKANQDEGHES---ALVARG 230
           ++LL S+P SY +   T+LY +DTL L+ +  +L + EK KK    EG  S    LV RG
Sbjct: 145 LILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRG 204

Query: 231 M-------NRNGRKXXXXXXXXXXXXXXXXXVLYA------IVITWRVTLKGIVLGE--- 362
                   N++  K                   Y       I   W++  K    G+   
Sbjct: 205 SQQEKNTNNKSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISKCWKLQDKDKRTGKYIP 264

Query: 363 --RRMIPVTVAVIAAEDGDVYTVSASMDTS-SRDGWILDSGCVMHVCSRRDYFDSLQLKR 533
             ++      AV+  E  D   + A    + + D WILD+ C  H+C  RD+F + ++ +
Sbjct: 265 KGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQ 324

Query: 534 AGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGGVAYVPKMRRNLISLSQLDSKGCEYSA 713
            GT+ +GD + C V G G V+IKM DG    L  V ++P ++R+LISL  LD KG +YS 
Sbjct: 325 GGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSG 384

Query: 714 GGEVLKATRGREVLMVGE-KYRNLYRL 791
           G  +LK T+G  V+M    K  NLY L
Sbjct: 385 GDGILKVTKGSLVVMKASIKSANLYHL 411


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  125 bits (315), Expect = 1e-26
 Identities = 87/267 (32%), Positives = 130/267 (48%), Gaps = 23/267 (8%)
 Frame = +3

Query: 60  ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKANQDEGHES---ALVARG 230
           ++LL S+P SY +   T+LY +DTL L+ +  +L + EK KK    EG  S    LV +G
Sbjct: 130 LILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVQG 189

Query: 231 M-------NRNGRKXXXXXXXXXXXXXXXXXVLYA------IVITWRVTLKGIVLGE--- 362
                   N++  K                   Y       I   W++  K    G+   
Sbjct: 190 SQQEKNTNNKSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISKCWKLQDKDKRTGKYIP 249

Query: 363 --RRMIPVTVAVIAAEDGDVYTVSASMDTS-SRDGWILDSGCVMHVCSRRDYFDSLQLKR 533
             ++      AV+  E  D   + A    + + D WILD+ C  H+C  RD+F + ++ +
Sbjct: 250 KGKKEDEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQ 309

Query: 534 AGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGGVAYVPKMRRNLISLSQLDSKGCEYSA 713
            GT+ +GD + C V G G V+IKM DG    L  V ++P ++R+LISL  LD KG +YS 
Sbjct: 310 GGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSG 369

Query: 714 GGEVLKATRGREVLMVGE-KYRNLYRL 791
           G  +LK T+G  V+M  + K  NLY L
Sbjct: 370 GDGILKVTKGSLVVMKADIKSANLYHL 396


>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  123 bits (309), Expect = 7e-26
 Identities = 76/247 (30%), Positives = 127/247 (51%), Gaps = 5/247 (2%)
 Frame = +3

Query: 60  ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKK---ANQDEGHESALVARG 230
           ++LL+S+PD ++ + TTLL+ K+ + L+ + ++L SHE +K+     +    E ALVARG
Sbjct: 87  LMLLSSLPDEFEHLETTLLHGKENVSLDVVCSALYSHELRKQDKMKTKSTTSEEALVARG 146

Query: 231 MNRNGRKXXXXXXXXXXXXXXXXXVLYAIVIT-WRVTLKGIVLGERRMIPVTVAVIAAE- 404
             ++  K                   +      W+     +   E+ +    VA   ++ 
Sbjct: 147 RQQSQTKERRGMSKSKGRAVAKDECAFCHEKGHWKKDCPKLQKKEKVLQDANVAECKSDV 206

Query: 405 DGDVYTVSASMDTSSRDGWILDSGCVMHVCSRRDYFDSLQLKRAGTLSLGDGSACRVMGF 584
           + D+  + +   +   D WILDSGC  H+C  RD+F   Q    G + +G+ + C+ +G 
Sbjct: 207 ESDISLIVSLSASLYLDEWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVGI 266

Query: 585 GVVEIKMGDGVDHILGGVAYVPKMRRNLISLSQLDSKGCEYSAGGEVLKATRGREVLMVG 764
           G ++++  DG   IL  V YVPK+++NLISL  L+SKG   +    +LKAT G  V++ G
Sbjct: 267 GSIKLRNHDGSTRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATSGALVMLKG 326

Query: 765 EKYRNLY 785
               NLY
Sbjct: 327 VMKNNLY 333


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
           gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
           Japonica Group]
          Length = 778

 Score =  123 bits (309), Expect = 7e-26
 Identities = 84/252 (33%), Positives = 124/252 (49%), Gaps = 8/252 (3%)
 Frame = +3

Query: 60  ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKANQDEGH----ESALVAR 227
           ++LL S+P SY +   T+LY +DTL L+ +  +L + EK KK    EG     ES +V  
Sbjct: 145 LILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAESLVVGV 204

Query: 228 GMNRNGRKXXXXXXXXXXXXXXXXXVLYAIVITWRVTLKGIVLGE--RRMIPVTVAVIAA 401
           G  R  +                        I  +V   G    E  ++      AV+  
Sbjct: 205 GNRRRTQTTNQE-------------------IKAQVATVGDQSPEAGKKEEEGKAAVVTD 245

Query: 402 EDGDVYTVSASMDTS-SRDGWILDSGCVMHVCSRRDYFDSLQLKRAGTLSLGDGSACRVM 578
           E  D   + A +  + + D WILD+ C  H+C  RD+F + +  + GT+ +GD + C V 
Sbjct: 246 EKSDAELLVAYVGCAQTSDQWILDTACTYHMCPNRDWFATYETVQGGTVLMGDDTPCEVA 305

Query: 579 GFGVVEIKMGDGVDHILGGVAYVPKMRRNLISLSQLDSKGCEYSAGGEVLKATRGREVLM 758
           G G V+IKM DG    L  V ++P ++R+LIS   LD KG +YS G  +LK T+G  V+M
Sbjct: 306 GIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISFCTLDRKGYKYSGGDGILKVTKGSLVVM 365

Query: 759 VGE-KYRNLYRL 791
             + K  NLY L
Sbjct: 366 KADIKSANLYHL 377


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  120 bits (302), Expect = 5e-25
 Identities = 85/267 (31%), Positives = 128/267 (47%), Gaps = 23/267 (8%)
 Frame = +3

Query: 60   ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKANQDEGHES---ALVARG 230
            ++LL S+P SY +   T+LY +DTL L+ +  +L   EK KK    EG  S    L+  G
Sbjct: 352  LILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEGLIVWG 411

Query: 231  M-------NRNGRKXXXXXXXXXXXXXXXXXVLYA------IVITWRVTLKGIVLGE--- 362
                    N++  K                   Y       I   W++  K    G+   
Sbjct: 412  RQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDIFECWKLHDKDKRTGKYVP 471

Query: 363  --RRMIPVTVAVIAAEDGDVYTVSASMDTS-SRDGWILDSGCVMHVCSRRDYFDSLQLKR 533
              ++      AV+  E  D   + A    + + D WIL++ C+ H+C  RD+F + +  +
Sbjct: 472  KGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQ 531

Query: 534  AGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGGVAYVPKMRRNLISLSQLDSKGCEYSA 713
             GT+ +GD + C V G G V+IKM DG    L  V ++P ++R+LISL  LD KG +YS 
Sbjct: 532  VGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSG 591

Query: 714  GGEVLKATRGREVLMVGE-KYRNLYRL 791
            G  +LK T+G  V+M  + K  NLY L
Sbjct: 592  GDGILKVTKGSLVVMKADIKSANLYHL 618


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
           gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
           Japonica Group]
          Length = 1601

 Score =  120 bits (302), Expect = 5e-25
 Identities = 85/267 (31%), Positives = 128/267 (47%), Gaps = 23/267 (8%)
 Frame = +3

Query: 60  ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKANQDEGHES---ALVARG 230
           ++LL S+P SY +   T+LY +DTL L+ +  +L   EK KK    EG  S    L+  G
Sbjct: 145 LILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEGLIVWG 204

Query: 231 M-------NRNGRKXXXXXXXXXXXXXXXXXVLYA------IVITWRVTLKGIVLGE--- 362
                   N++  K                   Y       I   W++  K    G+   
Sbjct: 205 RQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDIFECWKLHDKDKRTGKYVP 264

Query: 363 --RRMIPVTVAVIAAEDGDVYTVSASMDTS-SRDGWILDSGCVMHVCSRRDYFDSLQLKR 533
             ++      AV+  E  D   + A    + + D WIL++ C+ H+C  RD+F + +  +
Sbjct: 265 KGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQ 324

Query: 534 AGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGGVAYVPKMRRNLISLSQLDSKGCEYSA 713
            GT+ +GD + C V G G V+IKM DG    L  V ++P ++R+LISL  LD KG +YS 
Sbjct: 325 VGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSG 384

Query: 714 GGEVLKATRGREVLMVGE-KYRNLYRL 791
           G  +LK T+G  V+M  + K  NLY L
Sbjct: 385 GDGILKVTKGSLVVMKADIKSANLYHL 411


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  120 bits (300), Expect = 8e-25
 Identities = 87/267 (32%), Positives = 127/267 (47%), Gaps = 23/267 (8%)
 Frame = +3

Query: 60  ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKANQDEGHES---ALVARG 230
           ++LL S+P SY +   T+LY  DTL L+ +  +L + EK KK    EG  S    LV RG
Sbjct: 180 LILLCSLPSSYANFRDTILYSHDTLILKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRG 239

Query: 231 M-------NRNGRKXXXXXXXXXXXXXXXXXVLYA------IVITWRVTLKGIVLGE--- 362
                   N++  K                   Y       I   W++  K    G+   
Sbjct: 240 RQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTGKYIP 299

Query: 363 --RRMIPVTVAVIAAEDGDVYTVSASMDTS-SRDGWILDSGCVMHVCSRRDYFDSLQLKR 533
             ++      AV+  E  D   + A    + + D WILD+    H+C  RD+F + +  +
Sbjct: 300 KGKKEEEGKAAVVTDEKSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQ 359

Query: 534 AGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGGVAYVPKMRRNLISLSQLDSKGCEYSA 713
            GT+ +GD + C V G G V+IKM DG    L  V ++P ++R+LISL  LD KG +YS 
Sbjct: 360 GGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSG 419

Query: 714 GGEVLKATRGREVLMVGE-KYRNLYRL 791
           G  +LK T+G  V+M  + K  NLY L
Sbjct: 420 GDGILKVTKGSLVVMKADIKSANLYHL 446


>emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera]
          Length = 344

 Score =  120 bits (300), Expect = 8e-25
 Identities = 83/247 (33%), Positives = 123/247 (49%), Gaps = 5/247 (2%)
 Frame = +3

Query: 60  ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKANQDEGHESA--LVARGM 233
           I L+ S+P+SY+  V  ++Y + TL ++ ++ +L S E +K   +   ++S   LVARG 
Sbjct: 100 IFLMCSLPNSYEHFVDIMMYGRGTLFIKDVRVALNSRELKKMVFKSRKYDSGEGLVARGR 159

Query: 234 NR---NGRKXXXXXXXXXXXXXXXXXVLYAIVITWRVTLKGIVLGERRMIPVTVAVIAAE 404
            R   NGR+                      V       KG     +R      A  A E
Sbjct: 160 TRKKNNGRRGRSRSKSRGNNKCFKCKKEGHYVKNXP-DRKG--KENKRNYNSGDATFAKE 216

Query: 405 DGDVYTVSASMDTSSRDGWILDSGCVMHVCSRRDYFDSLQLKRAGTLSLGDGSACRVMGF 584
           + +   V     T+S D WILDSGC  H+    D+F + Q    G + +G+  AC+V+G 
Sbjct: 217 NSNTTDVLLVXVTNSDDEWILDSGCSYHMSPNGDWFSTYQPIDGGKVLMGNKVACKVVGI 276

Query: 585 GVVEIKMGDGVDHILGGVAYVPKMRRNLISLSQLDSKGCEYSAGGEVLKATRGREVLMVG 764
             ++IKM  G+   L  V +VPK+ +NLI L  LDS GC Y AGG VL+ ++G  V+M G
Sbjct: 277 HXIQIKMHGGIIRTLTNVRHVPKLNKNLIFLRTLDSNGCIYKAGGGVLRVSKGGLVVMNG 336

Query: 765 EKYRNLY 785
           +K   LY
Sbjct: 337 KKINGLY 343


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1312

 Score =  120 bits (300), Expect = 8e-25
 Identities = 87/267 (32%), Positives = 127/267 (47%), Gaps = 23/267 (8%)
 Frame = +3

Query: 60  ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKANQDEGHES---ALVARG 230
           ++LL S+P SY +   T+LY  DTL L+ +  +L + EK KK    EG  S    LV RG
Sbjct: 180 LILLCSLPSSYANFRDTILYSHDTLILKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRG 239

Query: 231 M-------NRNGRKXXXXXXXXXXXXXXXXXVLYA------IVITWRVTLKGIVLGE--- 362
                   N++  K                   Y       I   W++  K    G+   
Sbjct: 240 RQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTGKYIP 299

Query: 363 --RRMIPVTVAVIAAEDGDVYTVSASMDTS-SRDGWILDSGCVMHVCSRRDYFDSLQLKR 533
             ++      AV+  E  D   + A    + + D WILD+    H+C  RD+F + +  +
Sbjct: 300 KGKKEEEGKAAVVTDEKSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQ 359

Query: 534 AGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGGVAYVPKMRRNLISLSQLDSKGCEYSA 713
            GT+ +GD + C V G G V+IKM DG    L  V ++P ++R+LISL  LD KG +YS 
Sbjct: 360 GGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSG 419

Query: 714 GGEVLKATRGREVLMVGE-KYRNLYRL 791
           G  +LK T+G  V+M  + K  NLY L
Sbjct: 420 GDGILKVTKGSLVVMKADIKSANLYHL 446


>gb|EOY01950.1| Uncharacterized protein TCM_011728 [Theobroma cacao]
          Length = 176

 Score =  119 bits (299), Expect = 1e-24
 Identities = 68/119 (57%), Positives = 80/119 (67%)
 Frame = +3

Query: 435 MDTSSRDGWILDSGCVMHVCSRRDYFDSLQLKRAGTLSLGDGSACRVMGFGVVEIKMGDG 614
           MD +S   W LDS    H+C ++D FD LQ   AG L+LG+ S  +VMG  VV+IKM DG
Sbjct: 1   MDANS--DWYLDSASATHICYQKDCFDLLQEGVAGNLTLGNKSIVKVMGIRVVKIKMFDG 58

Query: 615 VDHILGGVAYVPKMRRNLISLSQLDSKGCEYSAGGEVLKATRGREVLMVGEKYRNLYRL 791
           V   LGGVAYVPKMR+NLISLS LDSKG  YSA   V+K T+G  VLM G  +  LYRL
Sbjct: 59  VVRSLGGVAYVPKMRKNLISLSLLDSKGFGYSACDGVVKVTQGDMVLMRGNLHNGLYRL 117


>gb|EOY07366.1| Adenine nucleotide alpha hydrolases-like superfamily protein
           [Theobroma cacao]
          Length = 434

 Score =  118 bits (296), Expect = 2e-24
 Identities = 68/134 (50%), Positives = 85/134 (63%)
 Frame = +3

Query: 390 VIAAEDGDVYTVSASMDTSSRDGWILDSGCVMHVCSRRDYFDSLQLKRAGTLSLGDGSAC 569
           V   ++ DV T+S +MD +S   W LD     H+C +++ FD LQ    G L+LG+ S  
Sbjct: 244 VAEGDNCDVLTISENMDANS--DWYLDFASATHICYQKNCFDLLQEGVTGNLTLGNKSIV 301

Query: 570 RVMGFGVVEIKMGDGVDHILGGVAYVPKMRRNLISLSQLDSKGCEYSAGGEVLKATRGRE 749
           +VMG  VV+IKM DGV   LGGVAYVPKM +NLISLS LDSKG  YSA   V+K T+G  
Sbjct: 302 KVMGLVVVKIKMFDGVVRSLGGVAYVPKMHKNLISLSLLDSKGYGYSACDGVVKVTQGDM 361

Query: 750 VLMVGEKYRNLYRL 791
           VLM G  +  LY L
Sbjct: 362 VLMRGNLHNGLYHL 375


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  117 bits (294), Expect = 4e-24
 Identities = 83/252 (32%), Positives = 127/252 (50%), Gaps = 16/252 (6%)
 Frame = +3

Query: 60  ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKANQDEGHES----ALVAR 227
           +LLL S+P+SY +   T+L  +D L L+ +  +L + EK K   Q++G  S    AL  R
Sbjct: 143 LLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVR 202

Query: 228 GMNRNG----RKXXXXXXXXXXXXXXXXXVLYAIVITWRVT-LKGIVLGERRMIP---VT 383
           G   N     +                   +Y  +    +   K +   ER+      V+
Sbjct: 203 GRTENRTSNEKNYDRRGRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVS 262

Query: 384 VAVIAAED---GDVYTVSASMDTSSRDGWILDSGCVMHVCSRRDYFDSLQ-LKRAGTLSL 551
           VA  AA D   GD   V A    +  D WILDS C  H+C++R++F S + +++   + +
Sbjct: 263 VASAAASDDDSGDCLVVFAGC-VAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRM 321

Query: 552 GDGSACRVMGFGVVEIKMGDGVDHILGGVAYVPKMRRNLISLSQLDSKGCEYSAGGEVLK 731
           GD + C ++G G V+IK  DG+   L  V Y+P M RNLISLS LD++G +YS    VLK
Sbjct: 322 GDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLK 381

Query: 732 ATRGREVLMVGE 767
            ++G  V + G+
Sbjct: 382 VSKGSLVCLKGD 393


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  117 bits (294), Expect = 4e-24
 Identities = 83/252 (32%), Positives = 127/252 (50%), Gaps = 16/252 (6%)
 Frame = +3

Query: 60  ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKANQDEGHES----ALVAR 227
           +LLL S+P+SY +   T+L  +D L L+ +  +L + EK K   Q++G  S    AL  R
Sbjct: 143 LLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVR 202

Query: 228 GMNRNG----RKXXXXXXXXXXXXXXXXXVLYAIVITWRVT-LKGIVLGERRMIP---VT 383
           G   N     +                   +Y  +    +   K +   ER+      V+
Sbjct: 203 GRTENRTSNEKNYDRRGRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVS 262

Query: 384 VAVIAAED---GDVYTVSASMDTSSRDGWILDSGCVMHVCSRRDYFDSLQ-LKRAGTLSL 551
           VA  AA D   GD   V A    +  D WILDS C  H+C++R++F S + +++   + +
Sbjct: 263 VASAAASDDDSGDCLVVFAGC-VAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRM 321

Query: 552 GDGSACRVMGFGVVEIKMGDGVDHILGGVAYVPKMRRNLISLSQLDSKGCEYSAGGEVLK 731
           GD + C ++G G V+IK  DG+   L  V Y+P M RNLISLS LD++G +YS    VLK
Sbjct: 322 GDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLK 381

Query: 732 ATRGREVLMVGE 767
            ++G  V + G+
Sbjct: 382 VSKGSLVCLKGD 393


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77549942|gb|ABA92739.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1373

 Score =  117 bits (294), Expect = 4e-24
 Identities = 83/252 (32%), Positives = 127/252 (50%), Gaps = 16/252 (6%)
 Frame = +3

Query: 60  ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKANQDEGHES----ALVAR 227
           +LLL S+P+SY +   T+L  +D L L+ +  +L + EK K   Q++G  S    AL  R
Sbjct: 143 LLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVR 202

Query: 228 GMNRNG----RKXXXXXXXXXXXXXXXXXVLYAIVITWRVT-LKGIVLGERRMIP---VT 383
           G   N     +                   +Y  +    +   K +   ER+      V+
Sbjct: 203 GRTENRTSNEKNYDRRGRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVS 262

Query: 384 VAVIAAED---GDVYTVSASMDTSSRDGWILDSGCVMHVCSRRDYFDSLQ-LKRAGTLSL 551
           VA  AA D   GD   V A    +  D WILDS C  H+C++R++F S + +++   + +
Sbjct: 263 VASAAASDDDSGDCLVVFAGC-VAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRM 321

Query: 552 GDGSACRVMGFGVVEIKMGDGVDHILGGVAYVPKMRRNLISLSQLDSKGCEYSAGGEVLK 731
           GD + C ++G G V+IK  DG+   L  V Y+P M RNLISLS LD++G +YS    VLK
Sbjct: 322 GDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLK 381

Query: 732 ATRGREVLMVGE 767
            ++G  V + G+
Sbjct: 382 VSKGSLVCLKGD 393


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  117 bits (293), Expect = 5e-24
 Identities = 80/252 (31%), Positives = 127/252 (50%), Gaps = 16/252 (6%)
 Frame = +3

Query: 60  ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKANQDEGHES----ALVAR 227
           +LLL S+P+SY +   T+L  +D L L+ +  +L + EK K   Q++G  S    AL  R
Sbjct: 145 LLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVR 204

Query: 228 GMNRNG----RKXXXXXXXXXXXXXXXXXVLYAIVITWRVT-LKGIVLGERR-----MIP 377
           G   N     +                   +Y  +    +   K +   ER+      + 
Sbjct: 205 GRTENKTSNEKNYDRRGRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVS 264

Query: 378 VTVAVIAAED-GDVYTVSASMDTSSRDGWILDSGCVMHVCSRRDYFDSLQ-LKRAGTLSL 551
           V  A ++ +D GD   V A    +  D WILDS C  H+C++R++F S + +++   + +
Sbjct: 265 VASAAVSDDDSGDCLVVFAGC-VAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRM 323

Query: 552 GDGSACRVMGFGVVEIKMGDGVDHILGGVAYVPKMRRNLISLSQLDSKGCEYSAGGEVLK 731
           GD + C ++G G V+IK  DG+   L  V Y+P M RNLISLS LD++G +YS    VLK
Sbjct: 324 GDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLK 383

Query: 732 ATRGREVLMVGE 767
            ++G  V + G+
Sbjct: 384 VSKGSLVCLKGD 395


>gb|EOY27458.1| Leucine-rich repeat transmembrane protein kinase [Theobroma cacao]
          Length = 1179

 Score =  116 bits (290), Expect = 1e-23
 Identities = 67/134 (50%), Positives = 86/134 (64%)
 Frame = +3

Query: 390  VIAAEDGDVYTVSASMDTSSRDGWILDSGCVMHVCSRRDYFDSLQLKRAGTLSLGDGSAC 569
            V   +D DV T+S +MD +S   W L+S    H+C ++D FD LQ   AG L+LG+ S  
Sbjct: 1014 VAEGDDCDVLTISENMDANSY--WYLNSASATHICYQKDCFDLLQEGVAGNLTLGNKSIV 1071

Query: 570  RVMGFGVVEIKMGDGVDHILGGVAYVPKMRRNLISLSQLDSKGCEYSAGGEVLKATRGRE 749
            +VMG  VV+IKM DGV   L G+AYVPKMR+NLISL+ L+SKG  YSA   V+K T+   
Sbjct: 1072 KVMGLEVVKIKMFDGVVRSLDGMAYVPKMRKNLISLNLLNSKGYGYSACDGVVKVTQRDM 1131

Query: 750  VLMVGEKYRNLYRL 791
            VLM G  +  LY L
Sbjct: 1132 VLMRGNLHNGLYHL 1145


>gb|EOX97575.1| Uncharacterized protein TCM_006559 [Theobroma cacao]
          Length = 266

 Score =  108 bits (271), Expect(2) = 8e-23
 Identities = 66/134 (49%), Positives = 85/134 (63%)
 Frame = +3

Query: 390 VIAAEDGDVYTVSASMDTSSRDGWILDSGCVMHVCSRRDYFDSLQLKRAGTLSLGDGSAC 569
           V   +D DV T+S +MD +S     LD     H+  ++D FD  Q   A  L+LG+ S  
Sbjct: 77  VAEGDDCDVLTISKNMDANS--DLYLDFASATHIYYQKDCFDLPQEGVAENLTLGNKSIM 134

Query: 570 RVMGFGVVEIKMGDGVDHILGGVAYVPKMRRNLISLSQLDSKGCEYSAGGEVLKATRGRE 749
           +VMG  VV+IKM D V   LGG+AYV +MR+NLISLS LDSKG  YSA  EV+K T+G  
Sbjct: 135 KVMGLRVVKIKMFDRVVRFLGGMAYVLEMRKNLISLSLLDSKGYGYSACDEVVKVTQGDM 194

Query: 750 VLMVGEKYRNLYRL 791
           VLM+G  + +LYRL
Sbjct: 195 VLMMGNLHNDLYRL 208



 Score = 25.4 bits (54), Expect(2) = 8e-23
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 287 KDQGKGVVCYRYHVEGHFKRNCP 355
           K +   V C++    GH KR+CP
Sbjct: 39  KSRSNNVQCFQCKRYGHIKRDCP 61