BLASTX nr result
ID: Rehmannia24_contig00012367
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00012367
(3203 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera] 783 0.0
emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera] 758 0.0
gb|AAN64998.1| Putative gag-pol polyprotein [Oryza sativa Japoni... 465 0.0
emb|CAN76029.1| hypothetical protein VITISV_016069 [Vitis vinifera] 730 0.0
gb|AAX96510.1| retrotransposon protein, putative, Ty1-copia sub-... 552 0.0
emb|CAN66626.1| hypothetical protein VITISV_001861 [Vitis vinifera] 647 0.0
gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris] 640 0.0
emb|CAN66710.1| hypothetical protein VITISV_006397 [Vitis vinifera] 631 e-178
emb|CAE01299.2| OSJNBa0020P07.16 [Oryza sativa Japonica Group] 629 e-177
gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subc... 628 e-177
gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japoni... 628 e-177
emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group] 628 e-177
gb|ABF96702.1| retrotransposon protein, putative, Ty1-copia subc... 628 e-177
gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group] 628 e-177
gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-... 628 e-177
gb|ABA91402.1| retrotransposon protein, putative, Ty1-copia subc... 627 e-177
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Ja... 627 e-176
gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group] 627 e-176
emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group] 626 e-176
gb|AAT58846.1| putative polyprotein [Oryza sativa Japonica Group] 626 e-176
>emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]
Length = 1277
Score = 783 bits (2022), Expect = 0.0
Identities = 376/498 (75%), Positives = 433/498 (86%)
Frame = +3
Query: 1131 EAPLWKEAINNEIDSIMQNHTWELVDLPPGCKPLGCKWILKRKYKADGSIDKYKARLVAK 1310
E +WKEAI +EIDSI+QNHTWELV+LP GCKPL KWI KRK K DGSIDKYKARLV K
Sbjct: 776 EGLMWKEAIKSEIDSILQNHTWELVBLPLGCKPLSSKWIFKRKMKVDGSIDKYKARLVIK 835
Query: 1311 GFRQKEGYDFFDTYSPVTRITSIRVLIAIAALHNLEIHQMDVKTAFLNGELEEEIYMEQP 1490
G+RQ EG D+FDTYSPVTRI SIR+++AIAAL NLEIHQMDVKTAFLNG+L+EEIYMEQP
Sbjct: 836 GYRQTEGLDYFDTYSPVTRINSIRMVLAIAALRNLEIHQMDVKTAFLNGDLDEEIYMEQP 895
Query: 1491 EGYIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDSTMKSNGFKINECDKCVYIKGTTNDY 1670
EG+ APGQE+KVCKLVKSLYGLKQAPKQWHEKFD+ M S+GFKINECDKCVY+K T + Y
Sbjct: 896 EGFSAPGQEKKVCKLVKSLYGLKQAPKQWHEKFDNVMLSHGFKINECDKCVYVKDTEHGY 955
Query: 1671 VIVCLYVDDMLIMGSSHDLIMKTKNMLKKNFDMKDMGLSDVILGIKISRTSDGIVLSQSH 1850
VIVCLYVDDMLI+GS +I TKNML FDMKDMGL+DVILGIKI RTS+ ++LSQSH
Sbjct: 956 VIVCLYVDDMLIVGSDDKMITSTKNMLNSRFDMKDMGLADVILGIKIKRTSBELILSQSH 1015
Query: 1851 YVESILRMFNAFDSAPAKTPVDLSLHLAKNRGEPVSQLEYARVIGSLMYLTNCTRPDIAY 2030
YV+ IL F+ +S A+TPVD++LHL+KN+GE VSQ+EY+R+IGSLMYL +CTRPDIAY
Sbjct: 1016 YVDKILGKFDKDNSGVARTPVDVTLHLSKNKGESVSQVEYSRIIGSLMYLMSCTRPDIAY 1075
Query: 2031 SVSKLSRFTSNPSTDHWKAVTRVLRYLKYTMNYGILYTRYPAVLEGYCDANWISDTKDSK 2210
+VSKLSR+TSNP HW+ + RVL+YL++T +YG+ YTRYPAVLEGY DANWIS+ KDSK
Sbjct: 1076 AVSKLSRYTSNPGAKHWQGIIRVLKYLRFTRDYGLHYTRYPAVLEGYSDANWISNVKDSK 1135
Query: 2211 STSGFVFTIGGGAVSWKSSKQTCIARSTMESEFIALDKAGEEAE*LRNFLEDIPCWNKPV 2390
S SG+VFT+GG AVSWKSSKQ IARSTMESEFIALDK GEEAE LR+FLEDIP W+KPV
Sbjct: 1136 SHSGYVFTLGGAAVSWKSSKQXVIARSTMESEFIALDKCGEEAEWLRHFLEDIPRWSKPV 1195
Query: 2391 PAVMIHCDSQSTIGRAQSSMYNGKSRHIRRRHNTIRQLISNGVISVDYVKSKENLADPLT 2570
P + IHCDSQS IGRAQS+MYNGKSRHI RRHNTIRQL+S GVISVDYVKSK+N+ADPLT
Sbjct: 1196 PPICIHCDSQSAIGRAQSNMYNGKSRHIXRRHNTIRQLLSTGVISVDYVKSKDNIADPLT 1255
Query: 2571 KGINRDQLYKLLRGMGLK 2624
KG+NR+ + K RGM LK
Sbjct: 1256 KGLNRELVEKSSRGMXLK 1273
Score = 531 bits (1369), Expect = e-148
Identities = 256/426 (60%), Positives = 325/426 (76%), Gaps = 19/426 (4%)
Frame = +1
Query: 1 DVLHVPDIRKNLVSGPLLSKAGFRLVFESDKFVMTKNGQFLCKGYLDKGLFKMSVMSVFR 180
+VL+VP+IRKNLV G LL+ GFRLVFES+K V++K+G ++ KGY+ G++K++VM++ +
Sbjct: 395 NVLYVPEIRKNLVFGSLLNNHGFRLVFESNKVVLSKSGMYVGKGYMSDGMWKLNVMTIIK 454
Query: 181 QEAKNKNVTSVYLLDCSNLWHDRLGHVNFNTIKRLVNLELIPTFKTDSQDKCEICVEAKL 360
NK TS Y+L+ SNLWH RL HVN++T++RL+NL IPTF+ +S KCE CVEAKL
Sbjct: 455 SNM-NKASTSTYMLESSNLWHGRLRHVNYDTLRRLINLNHIPTFQINSNHKCETCVEAKL 513
Query: 361 AKAPFHSVTRSTKPLELIHTDVCDLKLVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAL 540
++ F SV R+T+PL+LIH+D+CDLK VQTRGG KYFITF+DD T+YCYVYLLKSKDEA+
Sbjct: 514 TRSSFQSVERNTEPLDLIHSDICDLKFVQTRGGNKYFITFVDDSTKYCYVYLLKSKDEAI 573
Query: 541 VAFKTYKNEVENQLNLKIKMIRSDRGGEYVAPFEEFCSGAGIIHQTTAPYSPQSNGVAER 720
F YK EVENQLN KIK++RSDRGGEY +PF + C+ GIIH+TT PYSPQSNGVAER
Sbjct: 574 EKFVLYKTEVENQLNKKIKVLRSDRGGEYESPFVDICAQHGIIHETTTPYSPQSNGVAER 633
Query: 721 KNRTLKEMMNAMLISSGLPQNLWGEAILSANYILNKIPHKGKNETPYELWKGRKPSYKYL 900
KNRTLKEMMNAMLIS LPQN+WGEAIL+ANY+LNK+P K +TPYELWKGRKPSY YL
Sbjct: 634 KNRTLKEMMNAMLISFSLPQNMWGEAILTANYLLNKVPKKKAEKTPYELWKGRKPSYTYL 693
Query: 901 KVWGCLAKVEVPKPKQVRIGPKTIDCAFIGYANNSSAYRFLVHKSAIPDINEGMIIESRN 1080
++WGCLAKV VP PK+V+IGPKTIDC FIGYA+NS+AYRFLV++S IPDI++ I+ESRN
Sbjct: 694 RMWGCLAKVAVPPPKKVKIGPKTIDCIFIGYAHNSNAYRFLVYESNIPDIHKNTIMESRN 753
Query: 1081 AVFFENIFPNKE-------------------RKEIQKLLSGKKLSIMR*IPSCKITLGSW 1203
A FFE++FP + + EI +L ++ CK W
Sbjct: 754 ASFFEDVFPCEPQTFKEAVNSTEGLMWKEAIKSEIDSILQNHTWELVBLPLGCKPLSSKW 813
Query: 1204 LISRRV 1221
+ R++
Sbjct: 814 IFKRKM 819
>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
Length = 1316
Score = 758 bits (1958), Expect = 0.0
Identities = 368/498 (73%), Positives = 423/498 (84%)
Frame = +3
Query: 1131 EAPLWKEAINNEIDSIMQNHTWELVDLPPGCKPLGCKWILKRKYKADGSIDKYKARLVAK 1310
E +WKEAI +EIDSI+QNHTWELVDLPPGCKPL KWI KRK K DGSIDKYKARLV K
Sbjct: 825 EGLMWKEAIKSEIDSILQNHTWELVDLPPGCKPLSSKWIFKRKMKVDGSIDKYKARLVIK 884
Query: 1311 GFRQKEGYDFFDTYSPVTRITSIRVLIAIAALHNLEIHQMDVKTAFLNGELEEEIYMEQP 1490
G+RQ EG D+FDTYSPVTRI SIR+++AIAAL NLEIHQMD+K EIYMEQP
Sbjct: 885 GYRQTEGLDYFDTYSPVTRINSIRMVLAIAALRNLEIHQMDMK----------EIYMEQP 934
Query: 1491 EGYIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDSTMKSNGFKINECDKCVYIKGTTNDY 1670
EG+ APGQE+KVCKLVKSLYGLKQAPKQWHEKFD+ M S+GFKINECDKCVY+K T + Y
Sbjct: 935 EGFSAPGQEKKVCKLVKSLYGLKQAPKQWHEKFDNVMLSHGFKINECDKCVYVKDTEHGY 994
Query: 1671 VIVCLYVDDMLIMGSSHDLIMKTKNMLKKNFDMKDMGLSDVILGIKISRTSDGIVLSQSH 1850
VIVCLYVDDMLI+GS +I TKNML FDMKDMGL+DVILGIKI RTS+ ++LSQSH
Sbjct: 995 VIVCLYVDDMLIVGSDDKMITSTKNMLNSRFDMKDMGLADVILGIKIKRTSNELILSQSH 1054
Query: 1851 YVESILRMFNAFDSAPAKTPVDLSLHLAKNRGEPVSQLEYARVIGSLMYLTNCTRPDIAY 2030
YV+ IL F+ +S A+TPVD++LHL+KN+GE VSQ+EY+R+IGSLMYL +CTRPDIAY
Sbjct: 1055 YVDKILGKFDKDNSGVARTPVDVTLHLSKNKGESVSQVEYSRIIGSLMYLMSCTRPDIAY 1114
Query: 2031 SVSKLSRFTSNPSTDHWKAVTRVLRYLKYTMNYGILYTRYPAVLEGYCDANWISDTKDSK 2210
+V KLSR+TSNP HW+ + RVL+YL++T +Y + YTRYPAVLEGY DANWIS+ KDSK
Sbjct: 1115 AVGKLSRYTSNPGAKHWQGIIRVLKYLRFTRDYXLHYTRYPAVLEGYSDANWISNVKDSK 1174
Query: 2211 STSGFVFTIGGGAVSWKSSKQTCIARSTMESEFIALDKAGEEAE*LRNFLEDIPCWNKPV 2390
S SG+VFT+GG AVSWKSSKQT IARSTMESEFIALDK GEEAE LR+FLEDIP W+KPV
Sbjct: 1175 SHSGYVFTLGGAAVSWKSSKQTVIARSTMESEFIALDKCGEEAEWLRHFLEDIPRWSKPV 1234
Query: 2391 PAVMIHCDSQSTIGRAQSSMYNGKSRHIRRRHNTIRQLISNGVISVDYVKSKENLADPLT 2570
P + IHCDSQS IGRAQS+MYNGKSRHIRRRHNTIRQL+S GVISVDYVKSK+N+ADPLT
Sbjct: 1235 PPICIHCDSQSAIGRAQSNMYNGKSRHIRRRHNTIRQLLSTGVISVDYVKSKDNIADPLT 1294
Query: 2571 KGINRDQLYKLLRGMGLK 2624
KG+NR+ + K GM LK
Sbjct: 1295 KGLNRELVEKSSXGMXLK 1312
Score = 542 bits (1396), Expect = e-151
Identities = 254/375 (67%), Positives = 317/375 (84%)
Frame = +1
Query: 1 DVLHVPDIRKNLVSGPLLSKAGFRLVFESDKFVMTKNGQFLCKGYLDKGLFKMSVMSVFR 180
+VL+VP+IRKNLVSG LL+ GFRLVF S+K V++K+G ++ KGY+ G++K++VM++ +
Sbjct: 395 NVLYVPEIRKNLVSGSLLNNHGFRLVFXSNKVVLSKSGMYVGKGYMSDGMWKLNVMTIIK 454
Query: 181 QEAKNKNVTSVYLLDCSNLWHDRLGHVNFNTIKRLVNLELIPTFKTDSQDKCEICVEAKL 360
NK TS Y+L+ SNLWH RLGHVN++T++RL+NL IPTF+ +S KCE CVEAKL
Sbjct: 455 SNM-NKASTSTYMLESSNLWHGRLGHVNYDTLRRLINLNHIPTFQINSNHKCETCVEAKL 513
Query: 361 AKAPFHSVTRSTKPLELIHTDVCDLKLVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAL 540
++ F SV R+T+PL+LIH+D+CDLK VQTRGG KYFITF+DD T+YCYVYLLKSKDEA+
Sbjct: 514 TRSSFQSVERNTEPLDLIHSDICDLKFVQTRGGNKYFITFVDDSTKYCYVYLLKSKDEAI 573
Query: 541 VAFKTYKNEVENQLNLKIKMIRSDRGGEYVAPFEEFCSGAGIIHQTTAPYSPQSNGVAER 720
F YK EVENQLN KIK++RSDRGGEY +PF + C+ GIIH+TTAPYSPQSNGVAER
Sbjct: 574 EKFVLYKTEVENQLNKKIKVLRSDRGGEYESPFVDICAQHGIIHETTAPYSPQSNGVAER 633
Query: 721 KNRTLKEMMNAMLISSGLPQNLWGEAILSANYILNKIPHKGKNETPYELWKGRKPSYKYL 900
KNRTLKEMMNAMLISS LPQN+WGEAIL+ANY+LNK+P K +TPYELWKGRKPSY YL
Sbjct: 634 KNRTLKEMMNAMLISSSLPQNMWGEAILTANYLLNKVPKKKAEKTPYELWKGRKPSYTYL 693
Query: 901 KVWGCLAKVEVPKPKQVRIGPKTIDCAFIGYANNSSAYRFLVHKSAIPDINEGMIIESRN 1080
++WGCLAKV VP PK+V+IGPKTIDC FIGYA+NS+AYRFLV++S IPDI++ I+ESRN
Sbjct: 694 RMWGCLAKVAVPPPKKVKIGPKTIDCIFIGYAHNSNAYRFLVYESNIPDIHKNTIMESRN 753
Query: 1081 AVFFENIFPNKERKE 1125
A FFE++FP K ++E
Sbjct: 754 ASFFEDVFPCKSKEE 768
>gb|AAN64998.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108707933|gb|ABF95728.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1040
Score = 465 bits (1196), Expect(2) = 0.0
Identities = 219/353 (62%), Positives = 280/353 (79%)
Frame = +3
Query: 1125 NPEAPLWKEAINNEIDSIMQNHTWELVDLPPGCKPLGCKWILKRKYKADGSIDKYKARLV 1304
+P+A WKEA+ +E+DSI+ N TWE+ + P GCKP+GCKW+ K+K + DG+I+KYKARLV
Sbjct: 688 SPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV 747
Query: 1305 AKGFRQKEGYDFFDTYSPVTRITSIRVLIAIAALHNLEIHQMDVKTAFLNGELEEEIYME 1484
AKG+ QKEG DFFDTYSPV R+T+IRVL+++AA H L +HQMDVKTAFLNGEL+EEIYM+
Sbjct: 748 AKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMD 807
Query: 1485 QPEGYIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDSTMKSNGFKINECDKCVYIKGTTN 1664
QP+G++ GQE KVCKL+KSLYGLKQAPKQWHEKFD T+ S GF +NE DKCVY
Sbjct: 808 QPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYLHGGV 867
Query: 1665 DYVIVCLYVDDMLIMGSSHDLIMKTKNMLKKNFDMKDMGLSDVILGIKISRTSDGIVLSQ 1844
+ VI+CLYVDD+LI G++ ++I + K+ L +NFDMKD+G++DVIL IK+ R +GI L Q
Sbjct: 868 EGVILCLYVDDILIFGTNLEMINEVKSFLYQNFDMKDLGVADVILNIKLIRCENGITLLQ 927
Query: 1845 SHYVESILRMFNAFDSAPAKTPVDLSLHLAKNRGEPVSQLEYARVIGSLMYLTNCTRPDI 2024
SHYVE IL F DS P+ TP D SL L KN+ +QLEY+++IGSLMYL + TRPDI
Sbjct: 928 SHYVEKILNHFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDI 987
Query: 2025 AYSVSKLSRFTSNPSTDHWKAVTRVLRYLKYTMNYGILYTRYPAVLEGYCDAN 2183
+++VSKLSRFTSNP DHW+A+ RV+RYLK T+ + Y+ YP VLEGY D+N
Sbjct: 988 SFAVSKLSRFTSNPGDDHWRALERVMRYLKGTIELRLHYSGYPTVLEGYSDSN 1040
Score = 314 bits (805), Expect(2) = 0.0
Identities = 143/248 (57%), Positives = 198/248 (79%), Gaps = 1/248 (0%)
Frame = +1
Query: 388 RSTKPLELIHTDVCDLKLVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEALVAFKTYKNE 567
R+ PLEL+H+D+C++ V +GGK+YF+T IDD TR+C VYLLK+KDEAL FK YK E
Sbjct: 438 RNLAPLELLHSDLCEMNGVLMKGGKRYFMTLIDDATRFCDVYLLKTKDEALDYFKIYKAE 497
Query: 568 VENQLNLKIKMIRSDRGGEYVA-PFEEFCSGAGIIHQTTAPYSPQSNGVAERKNRTLKEM 744
VENQL+ KIK +RSDRGGE+ + F+ FC G+IH+ T YSP+SNG+AERKNRTL ++
Sbjct: 498 VENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGVIHERTPLYSPESNGIAERKNRTLTDL 557
Query: 745 MNAMLISSGLPQNLWGEAILSANYILNKIPHKGKNETPYELWKGRKPSYKYLKVWGCLAK 924
+NAML ++GLP+ W EA+L++N++LN++P+K K++TPYE+W GRKPS YL+ WGCLAK
Sbjct: 558 VNAMLDTAGLPKAWWEEALLTSNHVLNRVPNKNKDKTPYEIWTGRKPSLSYLRTWGCLAK 617
Query: 925 VEVPKPKQVRIGPKTIDCAFIGYANNSSAYRFLVHKSAIPDINEGMIIESRNAVFFENIF 1104
V VP K+ ++GPKT+DC F+GYA++S AYRFL+ KS +PD++ G I+ESR+A FFE+ F
Sbjct: 618 VNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFF 677
Query: 1105 PNKERKEI 1128
P K+ ++
Sbjct: 678 PMKDTHKV 685
>emb|CAN76029.1| hypothetical protein VITISV_016069 [Vitis vinifera]
Length = 1096
Score = 730 bits (1885), Expect = 0.0
Identities = 359/499 (71%), Positives = 417/499 (83%), Gaps = 1/499 (0%)
Frame = +3
Query: 1131 EAPLWKEAINNEIDSIMQNHTWELVDLPPGCKPLGCKWILKRKYKADGSIDKYKARLVAK 1310
E +WKEAI +EIDSI+QNHTWELVDLPPGCKPL KWI KRK K DGSIDKYKARLV K
Sbjct: 608 EGLMWKEAIKSEIDSILQNHTWELVDLPPGCKPLSSKWIFKRKMKVDGSIDKYKARLVIK 667
Query: 1311 GFRQKEGYDFFDTYSPVTRITSIRVLIAIAALHNLEIHQMDVKTAFLNGELEEEIYMEQP 1490
G+RQ EG D+FDTYSPVTRI SIR+++AIAAL NLEIHQMDVKTAFLNG+L+EEIYMEQP
Sbjct: 668 GYRQTEGLDYFDTYSPVTRINSIRMVLAIAALRNLEIHQMDVKTAFLNGDLDEEIYMEQP 727
Query: 1491 EGYIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDSTMKSNGFKINECDKCVYIKGTTNDY 1670
EG+ APGQE+KVCKLVKSLYGLKQAPKQWHEKFD+ M S+GFKINECDKCVY+K T + Y
Sbjct: 728 EGFSAPGQEKKVCKLVKSLYGLKQAPKQWHEKFDNVMLSHGFKINECDKCVYVKDTEHGY 787
Query: 1671 VIVCLYVDDMLIMGSSHDLIMKTKNMLK-KNFDMKDMGLSDVILGIKISRTSDGIVLSQS 1847
VIVCLYVDDMLI+GS +I TKNML+ + KDMGL+DVILGIKI RTS+ ++LSQS
Sbjct: 788 VIVCLYVDDMLIVGSDDKMITSTKNMLQIQGLTSKDMGLADVILGIKIKRTSNELILSQS 847
Query: 1848 HYVESILRMFNAFDSAPAKTPVDLSLHLAKNRGEPVSQLEYARVIGSLMYLTNCTRPDIA 2027
HYV+ IL F+ +S A+TPVD++LHL+KN+GE VSQ+EY+R+IGSLMYL +CTRPDIA
Sbjct: 848 HYVDKILGKFDKDNSGVARTPVDVTLHLSKNKGESVSQVEYSRIIGSLMYLMSCTRPDIA 907
Query: 2028 YSVSKLSRFTSNPSTDHWKAVTRVLRYLKYTMNYGILYTRYPAVLEGYCDANWISDTKDS 2207
Y+V KLSR+TSNP HW+ + RVL+YL++T +YG+ YTRYPAVLEGY DANWIS+ +
Sbjct: 908 YAVGKLSRYTSNPGAKHWQGIIRVLKYLRFTRDYGLHYTRYPAVLEGYSDANWISN--EV 965
Query: 2208 KSTSGFVFTIGGGAVSWKSSKQTCIARSTMESEFIALDKAGEEAE*LRNFLEDIPCWNKP 2387
+ G KQT IARSTMESEFIALDK GEEAE LR+FLEDIP W+KP
Sbjct: 966 QQCRG------------NPQKQTVIARSTMESEFIALDKCGEEAEWLRHFLEDIPRWSKP 1013
Query: 2388 VPAVMIHCDSQSTIGRAQSSMYNGKSRHIRRRHNTIRQLISNGVISVDYVKSKENLADPL 2567
VP + IHCDSQS IGRAQS+MYNGKSRHIRRRHNTIRQL+S GVISVDYVKSK+N+ADPL
Sbjct: 1014 VPPICIHCDSQSAIGRAQSNMYNGKSRHIRRRHNTIRQLLSTGVISVDYVKSKDNIADPL 1073
Query: 2568 TKGINRDQLYKLLRGMGLK 2624
TKG+NR+ + K RGMGLK
Sbjct: 1074 TKGLNRELVEKSSRGMGLK 1092
Score = 134 bits (338), Expect(2) = 8e-29
Identities = 88/251 (35%), Positives = 128/251 (50%), Gaps = 5/251 (1%)
Frame = +1
Query: 1 DVLHVPDIRKNLVSGPLLSKAGFRLVFESDKFVMTKNGQFLCKGYLDKGLFKMSVMSVFR 180
+VL+VP+IRKNLVSG LL+ GFRL +G ++ KGY+ G++K++VM++ +
Sbjct: 316 NVLYVPEIRKNLVSGSLLNNHGFRL-----------SGMYVGKGYMSDGMWKLNVMTIIK 364
Query: 181 QEAKNKNVTSVYLLDCSNLWHDRLGHVNFNTIKRLVNLELIPTFKTDSQDKCEICVEAKL 360
NK TS Y+L+ SNLWH RLGHVN++T++RL+NL IPTF+ +S KCE CVE K
Sbjct: 365 SNM-NKASTSTYMLESSNLWHGRLGHVNYDTLRRLINLNHIPTFQINSNHKCETCVEVKT 423
Query: 361 AKAPFHSVTRSTKPLELIHTDVCD-----LKLVQTRGGKKYFITFIDDCTRYCYVYLLKS 525
K + + L T+V + +K++++ G +Y F+D C ++ ++
Sbjct: 424 NK------DEAIEKFVLYKTEVENQLNKKIKVLRSDRGGEYESPFVDICAQHGIIH---- 473
Query: 526 KDEALVAFKTYKNEVENQLNLKIKMIRSDRGGEYVAPFEEFCSGAGIIHQTTAPYSPQSN 705
E AP+ SPQSN
Sbjct: 474 --------------------------------ETTAPY-----------------SPQSN 484
Query: 706 GVAERKNRTLK 738
GVAERKNR LK
Sbjct: 485 GVAERKNRNLK 495
Score = 22.3 bits (46), Expect(2) = 8e-29
Identities = 7/11 (63%), Positives = 11/11 (100%)
Frame = +3
Query: 738 GDDECDVDKFW 770
G+DEC+V+KF+
Sbjct: 496 GNDECNVNKFY 506
>gb|AAX96510.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77550477|gb|ABA93274.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 643
Score = 552 bits (1423), Expect(2) = 0.0
Identities = 282/517 (54%), Positives = 366/517 (70%), Gaps = 9/517 (1%)
Frame = +3
Query: 1107 EQRTERNPEAPLW-------KEAINNEIDSIMQNHTWELVDLPPGCKPLGCKWILKRKYK 1265
+Q E NPE + + + +DSIM N TWE+V+ P GCKP+GCKW+ K+K +
Sbjct: 148 DQTLEENPEEDNYIVRDKGLQRSGTQWMDSIMSNGTWEVVEHPYGCKPVGCKWVFKKKLR 207
Query: 1266 ADGSIDKYKARLVAKGFRQKEGYDFFDTYSPVTRITSIRVLIAIAALHNLEIHQMDVKTA 1445
DG+I+KYKARLVAKG+ QKEG DFFDTYSPV R+T+IRVL+A+AA H L +HQMDVKTA
Sbjct: 208 PDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTA 267
Query: 1446 FLNGELEEEIYMEQPEGYIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDSTMKSNGFKIN 1625
FLNGELEEEIYM+QP+GY+ GQ+ VCKL+KSLYGLKQAPKQWHEKFD+T++S GF +N
Sbjct: 268 FLNGELEEEIYMDQPDGYVLEGQKGMVCKLLKSLYGLKQAPKQWHEKFDNTLRSAGFVVN 327
Query: 1626 ECDKCVYIKGTTNDYVIVCLYVDDMLIMGSSHDLIMKTKNMLKKNFDMKDMGLSDVILGI 1805
E D+CVY + + VI+CLYVDD+LI G+S ++I + K+ L K F+MKD+G++DVIL I
Sbjct: 328 EADECVYYRYGEGEGVILCLYVDDILIFGTSLNVIEEVKDFLSKCFEMKDLGVADVILNI 387
Query: 1806 KISRTSD-GIVLSQSHYVESILRMFNAFDSAPAKTPVDLSLHLAKNRGEPVSQLEYARVI 1982
+ R + GI L QSHYV+ +L F D A TP D
Sbjct: 388 NLLRGDEGGITLVQSHYVDKVLSRFGYSDCKAAPTPYD---------------------- 425
Query: 1983 GSLMYLTNCTRPDIAYSVSKLSRFTSNPSTDHWKAVTRVLRYLKYTMNYGILYTRYPAVL 2162
T+ TRPDI ++VSKLS+F SNP DHW A+ RV+RYLK TM+YGI Y RYP VL
Sbjct: 426 -----PTSATRPDILFAVSKLSQFVSNPGDDHWHALERVMRYLKGTMSYGIHYARYPKVL 480
Query: 2163 EGYCDANWISDTKDSKSTSGFVFTIGGGAVSWKSSKQTCIARSTMESEFIALDKAGEEAE 2342
EGY D+NWISD + K+TSG+VFT+GGGAVSWKS KQT + RSTME+EF ALD A EAE
Sbjct: 481 EGYSDSNWISDADEIKATSGYVFTLGGGAVSWKSCKQTILTRSTMEAEFTALDIATVEAE 540
Query: 2343 *LRNFLEDIPCWNKPVPAVMIHCDSQSTIGRAQSSMYNGK-SRHIRRRHNTIRQLISNGV 2519
LR L D+ KPVPA++++CD+Q+ I + SS N K SRH++RR ++R+ ++GV
Sbjct: 541 WLRELLMDLSVVEKPVPAILMNCDNQTMIIKVNSSKDNMKSSRHVKRRLKSVRKQKNSGV 600
Query: 2520 ISVDYVKSKENLADPLTKGINRDQLYKLLRGMGLKST 2630
I++DYV++ +NLAD TKG+ R+ + R MGL+ T
Sbjct: 601 IALDYVQTAKNLADQFTKGLGRNVIDSASREMGLRPT 637
Score = 142 bits (359), Expect(2) = 0.0
Identities = 66/124 (53%), Positives = 90/124 (72%)
Frame = +1
Query: 742 MMNAMLISSGLPQNLWGEAILSANYILNKIPHKGKNETPYELWKGRKPSYKYLKVWGCLA 921
M+NAML ++GL + WGEAIL+A ++LN+IP K K TP+E W+ +K + +L+ WGCL
Sbjct: 1 MVNAMLDTAGLSKEWWGEAILTACHVLNRIPTKHKEVTPFEEWERKKLNLSHLRTWGCLT 60
Query: 922 KVEVPKPKQVRIGPKTIDCAFIGYANNSSAYRFLVHKSAIPDINEGMIIESRNAVFFENI 1101
KV VP K+ ++GPKT+DC F+GYA +S YRFL+ S +PD+ G I ESR+A FFEN
Sbjct: 61 KVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMCVGTITESRDATFFENE 120
Query: 1102 FPNK 1113
FP K
Sbjct: 121 FPMK 124
>emb|CAN66626.1| hypothetical protein VITISV_001861 [Vitis vinifera]
Length = 422
Score = 647 bits (1669), Expect = 0.0
Identities = 320/454 (70%), Positives = 368/454 (81%)
Frame = +3
Query: 1263 KADGSIDKYKARLVAKGFRQKEGYDFFDTYSPVTRITSIRVLIAIAALHNLEIHQMDVKT 1442
KADGSIDKYKARLVAKG++Q+EG D+FDTYSPV+RITSIR+LIAIAA+HNLEIHQMDVK
Sbjct: 2 KADGSIDKYKARLVAKGYKQREGLDYFDTYSPVSRITSIRMLIAIAAIHNLEIHQMDVKX 61
Query: 1443 AFLNGELEEEIYMEQPEGYIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDSTMKSNGFKI 1622
AFLNGEL+EEIYM+Q EG+IAPGQERKVCKLVKSLYGLKQAPKQWHEKFD+ M SNGFKI
Sbjct: 62 AFLNGELDEEIYMDQLEGFIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDNAMISNGFKI 121
Query: 1623 NECDKCVYIKGTTNDYVIVCLYVDDMLIMGSSHDLIMKTKNMLKKNFDMKDMGLSDVILG 1802
NECDKCVY+K YVIVCLYVDDMLI+GS ++I TK ML FDMKD+G++D+ILG
Sbjct: 122 NECDKCVYVKNNQKGYVIVCLYVDDMLIIGSDTNMIKMTKQMLSSRFDMKDLGVADIILG 181
Query: 1803 IKISRTSDGIVLSQSHYVESILRMFNAFDSAPAKTPVDLSLHLAKNRGEPVSQLEYARVI 1982
IK+S+TSDG++LSQSHY+E IL F +D P KTP+D++LHL KN SQLEY+R+I
Sbjct: 182 IKVSKTSDGLILSQSHYIEKILEKFKKYDIRPKKTPMDVNLHLFKNTXIGKSQLEYSRII 241
Query: 1983 GSLMYLTNCTRPDIAYSVSKLSRFTSNPSTDHWKAVTRVLRYLKYTMNYGILYTRYPAVL 2162
GSLMY+ NCTRPDIAYSVSKLSRFT
Sbjct: 242 GSLMYVMNCTRPDIAYSVSKLSRFTR---------------------------------- 267
Query: 2163 EGYCDANWISDTKDSKSTSGFVFTIGGGAVSWKSSKQTCIARSTMESEFIALDKAGEEAE 2342
Y DANWISD+KDSKSTSG+VFT+GG AVSWKSSKQTCIARSTMESEFIA+DKAGEEAE
Sbjct: 268 --YSDANWISDSKDSKSTSGYVFTLGGAAVSWKSSKQTCIARSTMESEFIAIDKAGEEAE 325
Query: 2343 *LRNFLEDIPCWNKPVPAVMIHCDSQSTIGRAQSSMYNGKSRHIRRRHNTIRQLISNGVI 2522
LRNFLEDIP W+KPV A+ IHCDSQSTIGRAQS YN KSRHIRR HNT+RQL+SNG+I
Sbjct: 326 XLRNFLEDIPNWSKPVXAICIHCDSQSTIGRAQSHNYNXKSRHIRRXHNTVRQLLSNGII 385
Query: 2523 SVDYVKSKENLADPLTKGINRDQLYKLLRGMGLK 2624
S+DYV+SK+N+AD LTKG+ R+Q+ +GMGLK
Sbjct: 386 SIDYVRSKDNIADXLTKGLTREQVESSSKGMGLK 419
>gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1290
Score = 640 bits (1652), Expect = 0.0
Identities = 301/499 (60%), Positives = 387/499 (77%)
Frame = +3
Query: 1128 PEAPLWKEAINNEIDSIMQNHTWELVDLPPGCKPLGCKWILKRKYKADGSIDKYKARLVA 1307
P+A W +AI E++SI +N+TW LVDLP G KP+GCKWI K+KY DGSI+KYKARLVA
Sbjct: 779 PDAKHWDKAIKTELESIKKNNTWTLVDLPKGAKPIGCKWIFKKKYHPDGSIEKYKARLVA 838
Query: 1308 KGFRQKEGYDFFDTYSPVTRITSIRVLIAIAALHNLEIHQMDVKTAFLNGELEEEIYMEQ 1487
KGF QK D+FDT++PVTRI+SIRVL+A+A++H L IHQMDVKT FLNGELEEEIYM Q
Sbjct: 839 KGFTQKHNIDYFDTFAPVTRISSIRVLLALASIHKLVIHQMDVKTTFLNGELEEEIYMTQ 898
Query: 1488 PEGYIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDSTMKSNGFKINECDKCVYIKGTTND 1667
PEG + GQ+ KVCKL+KSLYGLKQAPKQWHEK D+ + GF N+ DKCVY + +
Sbjct: 899 PEGCVVLGQKEKVCKLLKSLYGLKQAPKQWHEKLDNVLLCEGFSTNDADKCVYSRSENGE 958
Query: 1668 YVIVCLYVDDMLIMGSSHDLIMKTKNMLKKNFDMKDMGLSDVILGIKISRTSDGIVLSQS 1847
YVI+CLYVDDMLI G+ +D++ KTK L F+MKDMG + VILG+KI R D I+LSQ
Sbjct: 959 YVIICLYVDDMLIFGTCNDIVFKTKLFLGSKFEMKDMGEASVILGVKIIRKGDSILLSQE 1018
Query: 1848 HYVESILRMFNAFDSAPAKTPVDLSLHLAKNRGEPVSQLEYARVIGSLMYLTNCTRPDIA 2027
Y E +L+ F +D TP D + L KNRGE +SQ +YA++IGSL++L + +RPDIA
Sbjct: 1019 KYTEKLLKKFGYYDFKSVSTPYDANSKLKKNRGESISQTQYAQIIGSLLHLMSFSRPDIA 1078
Query: 2028 YSVSKLSRFTSNPSTDHWKAVTRVLRYLKYTMNYGILYTRYPAVLEGYCDANWISDTKDS 2207
Y+V +LSR T PS DHW+A+ R+++YL+ TM+Y I Y+ +PAVLEGY DANWISD+ ++
Sbjct: 1079 YAVGRLSRCTQCPSQDHWEALARLMKYLRGTMDYAIEYSGFPAVLEGYSDANWISDSDET 1138
Query: 2208 KSTSGFVFTIGGGAVSWKSSKQTCIARSTMESEFIALDKAGEEAE*LRNFLEDIPCWNKP 2387
KSTSG+VFT+GGGAV+W+S++QT IARSTMESEF+AL+ AG EAE L+NFL +IP KP
Sbjct: 1139 KSTSGYVFTLGGGAVTWRSARQTIIARSTMESEFVALEMAGSEAEWLKNFLANIPLGMKP 1198
Query: 2388 VPAVMIHCDSQSTIGRAQSSMYNGKSRHIRRRHNTIRQLISNGVISVDYVKSKENLADPL 2567
P+V +HCD QS I A++ YNGK+RHI+ RHN ++QL+ +G IS+DYVKS+ +LADPL
Sbjct: 1199 TPSVSMHCDCQSAIAIAKNKSYNGKNRHIQLRHNLVKQLLKSGTISIDYVKSERDLADPL 1258
Query: 2568 TKGINRDQLYKLLRGMGLK 2624
TK + R + + RGMGLK
Sbjct: 1259 TKPLGRKMILETSRGMGLK 1277
Score = 394 bits (1011), Expect = e-106
Identities = 208/371 (56%), Positives = 258/371 (69%)
Frame = +1
Query: 1 DVLHVPDIRKNLVSGPLLSKAGFRLVFESDKFVMTKNGQFLCKGYLDKGLFKMSVMSVFR 180
DVLHVP IR NLVS LLSK G ++ FESDK V+TKN F+ KGY D+GLF +++
Sbjct: 382 DVLHVPSIRVNLVSVALLSKVGVKVSFESDKIVITKNNVFVGKGYCDQGLFVLNI----- 436
Query: 181 QEAKNKNVTSVYLLDCSNLWHDRLGHVNFNTIKRLVNLELIPTFKTDSQDKCEICVEAKL 360
E N++ +S Y++D ++WH RLGHVN + + +L L LI +S KC+
Sbjct: 437 SEIMNESTSSAYIVDSYDIWHARLGHVNSSYVIKLQRLGLINMHDKESS-KCD------- 488
Query: 361 AKAPFHSVTRSTKPLELIHTDVCDLKLVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAL 540
K L LIHTD+ DLK +RGGK YF+TFIDD +RY VYL+K KDEA
Sbjct: 489 ------------KILGLIHTDLADLKQTMSRGGKNYFVTFIDDFSRYTKVYLIKHKDEAF 536
Query: 541 VAFKTYKNEVENQLNLKIKMIRSDRGGEYVAPFEEFCSGAGIIHQTTAPYSPQSNGVAER 720
F TYK EVENQLN KIK IRSDRGGEYV F ++C GIIH+ T PYSP+SNGVAER
Sbjct: 537 DMFLTYKAEVENQLNKKIKRIRSDRGGEYVL-FNDYCVKEGIIHEVTPPYSPESNGVAER 595
Query: 721 KNRTLKEMMNAMLISSGLPQNLWGEAILSANYILNKIPHKGKNETPYELWKGRKPSYKYL 900
KNRTLKEMMNAMLISS P NLWGE++L+A ++ N+IPH+ +TPYELWKG +P+ KYL
Sbjct: 596 KNRTLKEMMNAMLISSNAPDNLWGESLLTACFLQNRIPHRKTGKTPYELWKGYQPNLKYL 655
Query: 901 KVWGCLAKVEVPKPKQVRIGPKTIDCAFIGYANNSSAYRFLVHKSAIPDINEGMIIESRN 1080
+VWG LAKV +P PK+ +IG KT DC F+GYA +S+AYRFLV S I I I+E++N
Sbjct: 656 RVWGSLAKVMLPDPKKRKIGSKTSDCMFLGYAEHSAAYRFLVLNSDI--IERNTIVETKN 713
Query: 1081 AVFFENIFPNK 1113
A FFE+IFP K
Sbjct: 714 AEFFEHIFPLK 724
>emb|CAN66710.1| hypothetical protein VITISV_006397 [Vitis vinifera]
Length = 1105
Score = 631 bits (1628), Expect = e-178
Identities = 303/499 (60%), Positives = 374/499 (74%), Gaps = 1/499 (0%)
Frame = +3
Query: 1131 EAPLWKEAINNEIDSIMQNHTWELVDLPPGCKPLGCKWILKRKYKADGSIDKYKARLVAK 1310
+ WKEAIN+E+DSIM N TWELVDLPPG KP+GCKW+ +RKY DG I +KARLVAK
Sbjct: 605 DVAFWKEAINDEMDSIMSNQTWELVDLPPGSKPIGCKWVFRRKYHTDGMIQTFKARLVAK 664
Query: 1311 GFRQKEGYDFFDTYSPVTRITSIRVLIAIAALHNLEIHQMDVKTAFLNGELEEEIYMEQP 1490
GF+Q+EG D+FDTY+PV R TSIR+L A+A++HNL +HQMDVKTAFLNG+L EE+YMEQP
Sbjct: 665 GFKQREGIDYFDTYAPVARTTSIRILFALASIHNLFVHQMDVKTAFLNGDLNEEVYMEQP 724
Query: 1491 EGYIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDSTMKSNGFKINECDKCVYIKGTTNDY 1670
EG++ PG E KVCKLVKSLYGLKQAPKQWHEKFD + S+GF+ N DKC+Y K T +DY
Sbjct: 725 EGFVLPGNENKVCKLVKSLYGLKQAPKQWHEKFDHAILSBGFRHNNADKCLYSK-TCBDY 783
Query: 1671 -VIVCLYVDDMLIMGSSHDLIMKTKNMLKKNFDMKDMGLSDVILGIKISRTSDGIVLSQS 1847
+IVCLYVDDMLI+ I++TK L F MKD+G D ILGIK+ R S G L+Q+
Sbjct: 784 MIIVCLYVDDMLILSDDMRGIIETKRFLSSTFKMKDLGEVDTILGIKVKRNSGGYALNQT 843
Query: 1848 HYVESILRMFNAFDSAPAKTPVDLSLHLAKNRGEPVSQLEYARVIGSLMYLTNCTRPDIA 2027
HY+E ++ F+ A TP D S+ L KN G V+QLEYA IGSLMY CTR DI+
Sbjct: 844 HYIEKVVSKFSHLKIKDANTPFDSSIKLEKNDGRSVAQLEYASAIGSLMYAAQCTRADIS 903
Query: 2028 YSVSKLSRFTSNPSTDHWKAVTRVLRYLKYTMNYGILYTRYPAVLEGYCDANWISDTKDS 2207
++VSKLSRFTSNPS +HWKA+ RVL YL+ T + Y+++PA++EGY DA+WIS D+
Sbjct: 904 FAVSKLSRFTSNPSVEHWKAIGRVLSYLRNTKELSLQYSKFPAIIEGYSDASWISSVGDN 963
Query: 2208 KSTSGFVFTIGGGAVSWKSSKQTCIARSTMESEFIALDKAGEEAE*LRNFLEDIPCWNKP 2387
ST+G+VFT+GGGAVSW S KQTCI+ STME+EFIAL +EAE LR+ + DIP
Sbjct: 964 LSTTGWVFTLGGGAVSWGSKKQTCISHSTMEAEFIALAATRKEAEWLRDLMMDIPFTANN 1023
Query: 2388 VPAVMIHCDSQSTIGRAQSSMYNGKSRHIRRRHNTIRQLISNGVISVDYVKSKENLADPL 2567
V V IHCDSQ+T+ RA S +YNGKSRHI RH +RQLI NG+IS+ +V+S NLADP
Sbjct: 1024 VSTVSIHCDSQATLARAYSGVYNGKSRHISIRHEYVRQLIQNGIISISFVRSSGNLADPF 1083
Query: 2568 TKGINRDQLYKLLRGMGLK 2624
TK + RD + RGMGLK
Sbjct: 1084 TKPLTRDLVRITSRGMGLK 1102
Score = 376 bits (966), Expect = e-101
Identities = 192/370 (51%), Positives = 250/370 (67%), Gaps = 3/370 (0%)
Frame = +1
Query: 1 DVLHVPDIRKNLVSGPLLSKAGFRLVFESDKFVMTKNGQFLCKGYLDKGLFKMSVMSVFR 180
+VL+VPD+ KNLVSG LL K G + VFES K +++K+G F+ KGY G+ K+
Sbjct: 159 NVLYVPDMNKNLVSGDLLGKPGIKAVFESGKLILSKSGNFVGKGYSCDGMIKLCTNDNII 218
Query: 181 QEAKNKNVTSVYLLDCSNL--WHDRLGHVNFNTIKRLVNLELIPTFKTDSQDKCEICVEA 354
+ A TS Y+ D ++L WH+RL HV +TIKR+V LI T +KCEICV++
Sbjct: 219 KMAS----TSAYMCDSNSLFLWHNRLAHVGLSTIKRIVKCGLIAC-DTKKFEKCEICVKS 273
Query: 355 KLAKAPFHSVTRSTKPLELIHTDVCDLKLVQTRGGKKYFITFIDDCTRYCYVYLLKSKDE 534
K+ K FHSV RS+ L+L H+D+C+L + TRGG YF+TFID+ +R+ YV+LLK+K E
Sbjct: 274 KMIKKXFHSVERSSNLLDLXHSDLCELNXMLTRGGNXYFJTFIDBXSRFTYVFLLKNKSE 333
Query: 535 ALVAFKTYKNEVENQLNLKIKMIRSDRGGEYVAP-FEEFCSGAGIIHQTTAPYSPQSNGV 711
AFK YK EVENQL IK++RSDRGGEY + F FC GIIH+ TAPY+PQ NG+
Sbjct: 334 TFNAFKVYKTEVENQLGKNIKVLRSDRGGEYFSSEFNSFCEEYGIIHECTAPYTPQHNGI 393
Query: 712 AERKNRTLKEMMNAMLISSGLPQNLWGEAILSANYILNKIPHKGKNETPYELWKGRKPSY 891
AERKNRT EM+NAML+ + L NLWGEA+ +A +ILN+IP K +PYELWKGRKP+
Sbjct: 394 AERKNRTFLEMVNAMLLHAKLNFNLWGEALFTACHILNRIPMKKNEISPYELWKGRKPNI 453
Query: 892 KYLKVWGCLAKVEVPKPKQVRIGPKTIDCAFIGYANNSSAYRFLVHKSAIPDINEGMIIE 1071
Y KVWGCLA + P + ++ P+ I CAF+GYA+NS AYR L D+ IIE
Sbjct: 454 GYFKVWGCLAYCKKTDPNKTKLXPRAIKCAFVGYASNSKAYRLL-------DLEXNXIIE 506
Query: 1072 SRNAVFFENI 1101
SR FFEN+
Sbjct: 507 SREVEFFENL 516
>emb|CAE01299.2| OSJNBa0020P07.16 [Oryza sativa Japonica Group]
Length = 1314
Score = 629 bits (1622), Expect = e-177
Identities = 304/521 (58%), Positives = 401/521 (76%), Gaps = 4/521 (0%)
Frame = +3
Query: 1125 NPEAPLWKEAINNEIDSIMQNHTWELVDLPPGCKPLGCKWILKRKYKADGSIDKYKARLV 1304
+P+A WKEA+ +E+DSI+ N TWE+ + P GCKP+GCKW+ K+K + DG+I+KYKARLV
Sbjct: 772 SPDADYWKEAVRSEMDSIIANGTWEVTEQPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV 831
Query: 1305 AKGFRQKEGYDFFDTYSPVTRITSIRVLIAIAALHNLEIHQMDVKTAFLNGELEEEIYME 1484
AKG+ QKEG DFFDTYSPV R+T+IRVL+++AA H L +HQMDVKTAFLNGEL+EEIYM+
Sbjct: 832 AKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMD 891
Query: 1485 QPEGYIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDSTMKSNGFKINECDKCVYIKGTTN 1664
QP+G++ GQE KVCKL+KSLYGLKQAPKQWHEKFD T+ S GF +NE DKCVY +
Sbjct: 892 QPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFGVNEADKCVYYRHGGG 951
Query: 1665 DYVIVCLYVDDMLIMGSSHDLIMKTKNMLKKNFDMKDMGLSDVILGIKISRTSDGIVLSQ 1844
+ VI+CLYVDD+LI G++ ++I + K+ L +NFDMKD+G++DVIL IK+ R +GI L Q
Sbjct: 952 EGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQ 1011
Query: 1845 SHYVESILRMFNAFDSAPAKTPVDLSLHLAKNRGEPVSQLEYARVIGSLMYLTNCTRPDI 2024
SHYVE IL F DS P+ TP D SL L KN+ +QLEY+++IGSLMYL + TRPDI
Sbjct: 1012 SHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDI 1071
Query: 2025 AYSVSKLSRFTSNPSTDHWKAVTRVLRYLKYTMNYGILYTRYPAVLEGYCDANWISDTKD 2204
+++VSKLSRFTSNP DHW+A+ RV+RYLK T+ G+ YT YPAVLEGY D+NWISD +
Sbjct: 1072 SFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDE 1131
Query: 2205 SKSTSGFVFTIGGGAVSWKSSKQTCIARSTMESEFIALDKAGEEAE*LRNFLEDIPCWNK 2384
K+TSG+VFT+GGGAVSW+S KQT + RSTME+E ALD A EAE LR+ L D+P K
Sbjct: 1132 IKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEK 1191
Query: 2385 PVPAVMIHCDSQSTIGRAQSSMYNGK-SRHIRRRHNTIRQLISNGVISVDYVKSKENLAD 2561
PVPA++++CD+Q+ I + SS N K SRH++RR ++R+L ++GVI++DY+++ NLAD
Sbjct: 1192 PVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLAD 1251
Query: 2562 PLTKGINRDQLYKLLRGMGL---KSTT*RMFIAVTQPCELE 2675
P TKG++R+ + + MGL K + + T CEL+
Sbjct: 1252 PFTKGLSRNVIDNASKEMGLRPIKDVILQSILERTHLCELD 1292
Score = 410 bits (1053), Expect = e-111
Identities = 201/374 (53%), Positives = 278/374 (74%), Gaps = 2/374 (0%)
Frame = +1
Query: 1 DVLHVPDIRKNLVSGPLLSKAGFRLVFESDKFVMTKNGQFLCKGYLDKGLFKMSVMSVFR 180
+V HVP I +NLVSG L++ GF+LVFES+K V++K+G F+ KGY GLF+ S +S F
Sbjct: 330 NVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFS-LSDFC 388
Query: 181 QEAKNKNVTSVYLLDCSNLWHDRLGHVNFNTIKRLVNLELIPTFKTDSQDKCEICVEAKL 360
++ N SV D +N+WH RL H+NF + RL ++ LIP F KC CV++K
Sbjct: 389 NKSVNHICGSVD--DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQ 446
Query: 361 AKAPFHSVT-RSTKPLELIHTDVCDLKLVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEA 537
+ P + R+ PLEL+H+D+C++ V T+GGK+YF+TFIDD TR+CYVYLLK KDEA
Sbjct: 447 PRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKKKDEA 506
Query: 538 LVAFKTYKNEVENQLNLKIKMIRSDRGGEYVA-PFEEFCSGAGIIHQTTAPYSPQSNGVA 714
L FK YK EVENQL+ KIK +RSDRGGE+ + F+ FC GIIH+ T PYSP+SNG+A
Sbjct: 507 LDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIA 566
Query: 715 ERKNRTLKEMMNAMLISSGLPQNLWGEAILSANYILNKIPHKGKNETPYELWKGRKPSYK 894
ERKN TL +++NAML ++GLP+ WGE +L++N++LN++P++ K++TPYE+W GRKPS
Sbjct: 567 ERKNCTLTDLVNAMLDTAGLPKAWWGEVLLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLS 626
Query: 895 YLKVWGCLAKVEVPKPKQVRIGPKTIDCAFIGYANNSSAYRFLVHKSAIPDINEGMIIES 1074
YL+ WGCLAKV VP K+ ++GPKT+DC F+GYA++S AYRFL+ KS + D++ G+I+ES
Sbjct: 627 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVLDMHVGIIMES 686
Query: 1075 RNAVFFENIFPNKE 1116
R+A FFE+ FP K+
Sbjct: 687 RDATFFESFFPMKD 700
>gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1095
Score = 628 bits (1620), Expect = e-177
Identities = 299/501 (59%), Positives = 394/501 (78%), Gaps = 1/501 (0%)
Frame = +3
Query: 1125 NPEAPLWKEAINNEIDSIMQNHTWELVDLPPGCKPLGCKWILKRKYKADGSIDKYKARLV 1304
+P+A WKEA+ +E+DSI+ N TWE+ + P GCKP+GCKW+ K+K + DG+I+KYKARLV
Sbjct: 593 SPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV 652
Query: 1305 AKGFRQKEGYDFFDTYSPVTRITSIRVLIAIAALHNLEIHQMDVKTAFLNGELEEEIYME 1484
AKG+ QKEG DFFDTYSPV R+T+IRVL+++AA H L +HQMDVKTAFLNGEL+EEIYM+
Sbjct: 653 AKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMD 712
Query: 1485 QPEGYIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDSTMKSNGFKINECDKCVYIKGTTN 1664
QP+G++ GQE KVCKL+KSLYGLKQAPKQWHEKFD T+ S GF +NE DKCVY +
Sbjct: 713 QPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGG 772
Query: 1665 DYVIVCLYVDDMLIMGSSHDLIMKTKNMLKKNFDMKDMGLSDVILGIKISRTSDGIVLSQ 1844
+ VI+CLYVDD+LI G++ ++I + K+ L +NFDMKD+G++DVIL IK+ R +GI L Q
Sbjct: 773 EGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQ 832
Query: 1845 SHYVESILRMFNAFDSAPAKTPVDLSLHLAKNRGEPVSQLEYARVIGSLMYLTNCTRPDI 2024
SHYVE IL F DS P+ TP D SL L KN+ +QLEY+++IGSLMYL + TRPDI
Sbjct: 833 SHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDI 892
Query: 2025 AYSVSKLSRFTSNPSTDHWKAVTRVLRYLKYTMNYGILYTRYPAVLEGYCDANWISDTKD 2204
+++VSKLSRFTSNP DHW+A+ RV+RYLK T+ G+ YT YPAVLEGY D+NWISD +
Sbjct: 893 SFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDE 952
Query: 2205 SKSTSGFVFTIGGGAVSWKSSKQTCIARSTMESEFIALDKAGEEAE*LRNFLEDIPCWNK 2384
K+TSG+VFT+GGGAVSW+S KQT + RSTME+E ALD A EAE LR+ L D+P K
Sbjct: 953 IKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEK 1012
Query: 2385 PVPAVMIHCDSQSTIGRAQSSMYNGK-SRHIRRRHNTIRQLISNGVISVDYVKSKENLAD 2561
PVPA++++CD+Q+ I + SS N K SRH++RR ++R+L ++GVI++DY+++ NLAD
Sbjct: 1013 PVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLAD 1072
Query: 2562 PLTKGINRDQLYKLLRGMGLK 2624
P TKG++R+ + + MGL+
Sbjct: 1073 PFTKGLSRNVINNASKEMGLR 1093
Score = 412 bits (1058), Expect = e-112
Identities = 201/374 (53%), Positives = 278/374 (74%), Gaps = 2/374 (0%)
Frame = +1
Query: 1 DVLHVPDIRKNLVSGPLLSKAGFRLVFESDKFVMTKNGQFLCKGYLDKGLFKMSVMSVFR 180
+V HVP I +NLVSG L++ GF+LVFES+K V++K+G F+ KGY GLF+ S +S F
Sbjct: 151 NVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFS-LSDFC 209
Query: 181 QEAKNKNVTSVYLLDCSNLWHDRLGHVNFNTIKRLVNLELIPTFKTDSQDKCEICVEAKL 360
++ N SV D +N+WH RL H+NF + RL ++ LIP F KC CV++K
Sbjct: 210 NKSVNHICGSVD--DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQ 267
Query: 361 AKAPFHSVT-RSTKPLELIHTDVCDLKLVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEA 537
+ P + R+ PLEL+H+D+C++ V T+GGK+YF+T IDD TR+CYVYLLK+KDE
Sbjct: 268 PRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDET 327
Query: 538 LVAFKTYKNEVENQLNLKIKMIRSDRGGEYVA-PFEEFCSGAGIIHQTTAPYSPQSNGVA 714
L FK YK EVENQL+ KIK +RSDRGGE+ + F+ FC GIIH+ PYSP+SNG+A
Sbjct: 328 LDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERKPPYSPESNGIA 387
Query: 715 ERKNRTLKEMMNAMLISSGLPQNLWGEAILSANYILNKIPHKGKNETPYELWKGRKPSYK 894
ERKNRTL +++NAML ++GLP+ WGEA+L++N++LN++P++ K++TPYE+W GRKPS
Sbjct: 388 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLS 447
Query: 895 YLKVWGCLAKVEVPKPKQVRIGPKTIDCAFIGYANNSSAYRFLVHKSAIPDINEGMIIES 1074
YL+ WGCLAKV VP K+ ++GPKT+DC F+GYA++S AYRFL+ KS +PD++ G I+ES
Sbjct: 448 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMES 507
Query: 1075 RNAVFFENIFPNKE 1116
R+A FFE+ FP K+
Sbjct: 508 RDATFFESFFPMKD 521
>gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
Length = 1302
Score = 628 bits (1620), Expect = e-177
Identities = 299/501 (59%), Positives = 394/501 (78%), Gaps = 1/501 (0%)
Frame = +3
Query: 1125 NPEAPLWKEAINNEIDSIMQNHTWELVDLPPGCKPLGCKWILKRKYKADGSIDKYKARLV 1304
+P+A WKEA+ +E+DSI+ N TWE+ + P GCKP+GCKW+ K+K + DG+I+KYKARLV
Sbjct: 800 SPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV 859
Query: 1305 AKGFRQKEGYDFFDTYSPVTRITSIRVLIAIAALHNLEIHQMDVKTAFLNGELEEEIYME 1484
AKG+ QKEG DFFDTYSPV R+T+IRVL+++AA H L +HQMDVKTAFLNGEL+EEIYM+
Sbjct: 860 AKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMD 919
Query: 1485 QPEGYIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDSTMKSNGFKINECDKCVYIKGTTN 1664
QP+G++ GQE KVCKL+KSLYGLKQAPKQWHEKFD T+ S GF +NE DKCVY +
Sbjct: 920 QPDGFVLEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGG 979
Query: 1665 DYVIVCLYVDDMLIMGSSHDLIMKTKNMLKKNFDMKDMGLSDVILGIKISRTSDGIVLSQ 1844
+ VI+CLYVDD+LI G++ ++I + K+ L +NFDMKD+G++DVIL IK+ R +GI L Q
Sbjct: 980 EGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQ 1039
Query: 1845 SHYVESILRMFNAFDSAPAKTPVDLSLHLAKNRGEPVSQLEYARVIGSLMYLTNCTRPDI 2024
SHYVE IL F DS P+ TP D SL L KN+ +QLEY+++IGSLMYL + TRPDI
Sbjct: 1040 SHYVEKILNRFGYIDSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDI 1099
Query: 2025 AYSVSKLSRFTSNPSTDHWKAVTRVLRYLKYTMNYGILYTRYPAVLEGYCDANWISDTKD 2204
+++VSKLSRFTSNP DHW+A+ RV+RYLK T+ G+ YT YPAVLEGY D+NWISD +
Sbjct: 1100 SFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDE 1159
Query: 2205 SKSTSGFVFTIGGGAVSWKSSKQTCIARSTMESEFIALDKAGEEAE*LRNFLEDIPCWNK 2384
K+TSG+VFT+GGGAVSW+S KQT + RSTME+E ALD A EAE LR+ L D+P K
Sbjct: 1160 IKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEK 1219
Query: 2385 PVPAVMIHCDSQSTIGRAQSSMYNGK-SRHIRRRHNTIRQLISNGVISVDYVKSKENLAD 2561
PVPA++++CD+Q+ I + SS N K SRH++RR ++R+L ++GVI++DY+++ NLAD
Sbjct: 1220 PVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLAD 1279
Query: 2562 PLTKGINRDQLYKLLRGMGLK 2624
P TKG++R+ + + MGL+
Sbjct: 1280 PFTKGLSRNVIDNASKEMGLR 1300
Score = 416 bits (1068), Expect = e-113
Identities = 203/374 (54%), Positives = 280/374 (74%), Gaps = 2/374 (0%)
Frame = +1
Query: 1 DVLHVPDIRKNLVSGPLLSKAGFRLVFESDKFVMTKNGQFLCKGYLDKGLFKMSVMSVFR 180
+V HVP I +NLVSG L++ GF+LVFES+K V++K+G F+ KGY GLF+ S +S F
Sbjct: 358 NVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFS-LSDFC 416
Query: 181 QEAKNKNVTSVYLLDCSNLWHDRLGHVNFNTIKRLVNLELIPTFKTDSQDKCEICVEAKL 360
++ N SV D +N+WH RL H+NF + RL ++ LIP F KC CV++K
Sbjct: 417 NKSVNHICGSVD--DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQ 474
Query: 361 AKAPFHSVT-RSTKPLELIHTDVCDLKLVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEA 537
+ P + R+ PLEL+H+D+C++ V T+GGK+YF+T IDD TR+CYVYLLK+KDEA
Sbjct: 475 PRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEA 534
Query: 538 LVAFKTYKNEVENQLNLKIKMIRSDRGGEYVA-PFEEFCSGAGIIHQTTAPYSPQSNGVA 714
L FK YK EVENQL+ KIK +RSDRGGE+ + F+ FC GIIH+ T PYSP+SNG+A
Sbjct: 535 LDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIA 594
Query: 715 ERKNRTLKEMMNAMLISSGLPQNLWGEAILSANYILNKIPHKGKNETPYELWKGRKPSYK 894
ERKNRTL +++NAML ++GLP+ WGEA+L++N++LN++P++ K++TPYE+W GRKPS
Sbjct: 595 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLS 654
Query: 895 YLKVWGCLAKVEVPKPKQVRIGPKTIDCAFIGYANNSSAYRFLVHKSAIPDINEGMIIES 1074
YL+ WGCLAKV VP K+ ++GPKT+DC F+GYA++S AYRFL+ KS +PD++ G I+ES
Sbjct: 655 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMES 714
Query: 1075 RNAVFFENIFPNKE 1116
R+A FFE+ FP K+
Sbjct: 715 RDATFFESFFPMKD 728
>emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group]
Length = 1319
Score = 628 bits (1619), Expect = e-177
Identities = 299/501 (59%), Positives = 394/501 (78%), Gaps = 1/501 (0%)
Frame = +3
Query: 1125 NPEAPLWKEAINNEIDSIMQNHTWELVDLPPGCKPLGCKWILKRKYKADGSIDKYKARLV 1304
+P+A WKEA+ +E+DSI+ N TWE+ + P GCKP+GCKW+ K+K + DG+I+KYKARLV
Sbjct: 800 SPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV 859
Query: 1305 AKGFRQKEGYDFFDTYSPVTRITSIRVLIAIAALHNLEIHQMDVKTAFLNGELEEEIYME 1484
AKG+ QKEG DFFDTYSPV R+T+IRVL+++AA H L +HQMDVKTAFLNGEL+EEIYM+
Sbjct: 860 AKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMD 919
Query: 1485 QPEGYIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDSTMKSNGFKINECDKCVYIKGTTN 1664
QP+G++ GQE KVCKL+KSLYGLKQAPKQWHEKFD T+ S GF +NE DKCVY +
Sbjct: 920 QPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGG 979
Query: 1665 DYVIVCLYVDDMLIMGSSHDLIMKTKNMLKKNFDMKDMGLSDVILGIKISRTSDGIVLSQ 1844
+ VI+CLYVDD+LI G++ ++I + K+ L +NFDMKD+G++DVIL IK+ R +GI L Q
Sbjct: 980 EGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQ 1039
Query: 1845 SHYVESILRMFNAFDSAPAKTPVDLSLHLAKNRGEPVSQLEYARVIGSLMYLTNCTRPDI 2024
SHYVE IL F DS P+ TP D SL L KN+ +QLEY+++IGSLMYL + TRPDI
Sbjct: 1040 SHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDI 1099
Query: 2025 AYSVSKLSRFTSNPSTDHWKAVTRVLRYLKYTMNYGILYTRYPAVLEGYCDANWISDTKD 2204
+++VSKLSRFTSNP DHW+A+ RV+RYLK T+ G+ YT YPAVLEGY D+NWISD +
Sbjct: 1100 SFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDE 1159
Query: 2205 SKSTSGFVFTIGGGAVSWKSSKQTCIARSTMESEFIALDKAGEEAE*LRNFLEDIPCWNK 2384
K+TSG+VFT+GGGAVSW+S KQT + RSTME+E ALD A EAE LR+ L D+P K
Sbjct: 1160 IKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEK 1219
Query: 2385 PVPAVMIHCDSQSTIGRAQSSMYNGK-SRHIRRRHNTIRQLISNGVISVDYVKSKENLAD 2561
PVPA++++CD+Q+ I + SS N K SRH++RR ++R+L ++GVI++DY+++ NLAD
Sbjct: 1220 PVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLAD 1279
Query: 2562 PLTKGINRDQLYKLLRGMGLK 2624
P TKG++R+ + + MGL+
Sbjct: 1280 PFTKGLSRNVIDNASKEMGLR 1300
Score = 412 bits (1058), Expect = e-112
Identities = 202/374 (54%), Positives = 279/374 (74%), Gaps = 2/374 (0%)
Frame = +1
Query: 1 DVLHVPDIRKNLVSGPLLSKAGFRLVFESDKFVMTKNGQFLCKGYLDKGLFKMSVMSVFR 180
+V HVP I +NLVSG L++ GF+LVFES+K V++K+G F+ KGY GLF+ S +S F
Sbjct: 358 NVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFS-LSDFC 416
Query: 181 QEAKNKNVTSVYLLDCSNLWHDRLGHVNFNTIKRLVNLELIPTFKTDSQDKCEICVEAKL 360
++ N SV D +N+WH RL H+NF + RL ++ LI F KC CV++K
Sbjct: 417 NKSVNHICGSVD--DEANVWHSRLCHINFGLMSRLSSMCLISKFYIVKGSKCHSCVQSKQ 474
Query: 361 AKAPFHSVT-RSTKPLELIHTDVCDLKLVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEA 537
+ P + R+ PLEL+H+D+C++ V T+GGK+YF+T IDD TR+CYVYLLK+KDEA
Sbjct: 475 PRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEA 534
Query: 538 LVAFKTYKNEVENQLNLKIKMIRSDRGGEYVA-PFEEFCSGAGIIHQTTAPYSPQSNGVA 714
L FK YK EVENQL+ KIK +RSDRGGE+ + F+ FC GIIH+ T PYSP+SNG+A
Sbjct: 535 LDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIA 594
Query: 715 ERKNRTLKEMMNAMLISSGLPQNLWGEAILSANYILNKIPHKGKNETPYELWKGRKPSYK 894
ERKNRTL +++NAML ++GLP+ WGEA+L++N++LN++P++ K++TPYE+W GRKPS
Sbjct: 595 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLS 654
Query: 895 YLKVWGCLAKVEVPKPKQVRIGPKTIDCAFIGYANNSSAYRFLVHKSAIPDINEGMIIES 1074
YL+ WGCLAKV VP K+ ++GPKT+DC F+GYA++S AYRFL+ KS +PD++ G I+ES
Sbjct: 655 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMES 714
Query: 1075 RNAVFFENIFPNKE 1116
R+A FFE+ FP K+
Sbjct: 715 RDATFFESFFPMKD 728
>gb|ABF96702.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1518
Score = 628 bits (1619), Expect = e-177
Identities = 299/501 (59%), Positives = 394/501 (78%), Gaps = 1/501 (0%)
Frame = +3
Query: 1125 NPEAPLWKEAINNEIDSIMQNHTWELVDLPPGCKPLGCKWILKRKYKADGSIDKYKARLV 1304
+P+A WKEA+ +E+DSI+ N TWE+ + P GCKP+GCKW+ K+K + DG+I+KYKARLV
Sbjct: 1016 SPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV 1075
Query: 1305 AKGFRQKEGYDFFDTYSPVTRITSIRVLIAIAALHNLEIHQMDVKTAFLNGELEEEIYME 1484
AKG+ QKEG DFFDTYSPV R+T+IRVL+++AA H L +HQMDVKTAFLNGEL+EEIYM+
Sbjct: 1076 AKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMD 1135
Query: 1485 QPEGYIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDSTMKSNGFKINECDKCVYIKGTTN 1664
QP+G++ GQE KVCKL+KSLYGLKQAPKQWHEKFD T+ S GF +NE DKCVY +
Sbjct: 1136 QPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGG 1195
Query: 1665 DYVIVCLYVDDMLIMGSSHDLIMKTKNMLKKNFDMKDMGLSDVILGIKISRTSDGIVLSQ 1844
+ VI+CLYVDD+LI G++ ++I + K+ L +NFDMKD+G++DVIL IK+ R +GI L Q
Sbjct: 1196 EGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQ 1255
Query: 1845 SHYVESILRMFNAFDSAPAKTPVDLSLHLAKNRGEPVSQLEYARVIGSLMYLTNCTRPDI 2024
SHYVE IL F DS P+ TP D SL L KN+ +QLEY+++IGSLMYL + TRPDI
Sbjct: 1256 SHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDI 1315
Query: 2025 AYSVSKLSRFTSNPSTDHWKAVTRVLRYLKYTMNYGILYTRYPAVLEGYCDANWISDTKD 2204
+++VSKLSRFTSNP DHW+A+ RV+RYLK T+ G+ YT YPAVLEGY D+NWISD +
Sbjct: 1316 SFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDE 1375
Query: 2205 SKSTSGFVFTIGGGAVSWKSSKQTCIARSTMESEFIALDKAGEEAE*LRNFLEDIPCWNK 2384
K+TSG+VFT+GGGAVSW+S KQT + RSTME+E ALD A EAE LR+ L D+P K
Sbjct: 1376 IKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEK 1435
Query: 2385 PVPAVMIHCDSQSTIGRAQSSMYNGK-SRHIRRRHNTIRQLISNGVISVDYVKSKENLAD 2561
PVPA++++CD+Q+ I + SS N K SRH++RR ++R+L ++GVI++DY+++ NLAD
Sbjct: 1436 PVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLAD 1495
Query: 2562 PLTKGINRDQLYKLLRGMGLK 2624
P TKG++R+ + + MGL+
Sbjct: 1496 PFTKGLSRNVIDNASKEMGLR 1516
Score = 413 bits (1062), Expect = e-112
Identities = 202/374 (54%), Positives = 279/374 (74%), Gaps = 2/374 (0%)
Frame = +1
Query: 1 DVLHVPDIRKNLVSGPLLSKAGFRLVFESDKFVMTKNGQFLCKGYLDKGLFKMSVMSVFR 180
+V HVP I +NLVSG L++ GF+LVFES+K V++K+G F+ KGY GLF+ S +S F
Sbjct: 574 NVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFS-LSDFC 632
Query: 181 QEAKNKNVTSVYLLDCSNLWHDRLGHVNFNTIKRLVNLELIPTFKTDSQDKCEICVEAKL 360
++ N SV D +N+WH RL H+NF + RL ++ LIP F KC CV++K
Sbjct: 633 NKSVNHICGSVD--DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQ 690
Query: 361 AKAPFHSVT-RSTKPLELIHTDVCDLKLVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEA 537
+ P + R+ PLEL+H+D+C++ V T+GGK+YF+T IDD TR+CYVYLLK+KDEA
Sbjct: 691 PRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEA 750
Query: 538 LVAFKTYKNEVENQLNLKIKMIRSDRGGEYVA-PFEEFCSGAGIIHQTTAPYSPQSNGVA 714
L FK YK EVENQL+ KIK +RSDRGGE+ + F+ FC GIIH+ T PYSP+SNG+A
Sbjct: 751 LDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIA 810
Query: 715 ERKNRTLKEMMNAMLISSGLPQNLWGEAILSANYILNKIPHKGKNETPYELWKGRKPSYK 894
ERKNRTL +++NAML ++GLP+ WGEA+L++N++LN++P++ K++TPYE+W GRKP
Sbjct: 811 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPLLS 870
Query: 895 YLKVWGCLAKVEVPKPKQVRIGPKTIDCAFIGYANNSSAYRFLVHKSAIPDINEGMIIES 1074
YL+ WGCLAKV VP K+ ++GPKT+DC F+GYA++S AYRFL+ KS +PD++ G I+ES
Sbjct: 871 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMES 930
Query: 1075 RNAVFFENIFPNKE 1116
R+A FFE+ FP K+
Sbjct: 931 RDATFFESFFPMKD 944
>gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]
Length = 1391
Score = 628 bits (1619), Expect = e-177
Identities = 299/501 (59%), Positives = 394/501 (78%), Gaps = 1/501 (0%)
Frame = +3
Query: 1125 NPEAPLWKEAINNEIDSIMQNHTWELVDLPPGCKPLGCKWILKRKYKADGSIDKYKARLV 1304
+P+A WKEA+ +E+DSI+ N TWE+ + P GCKP+GCKW+ K+K + DG+I+KYKARLV
Sbjct: 889 SPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV 948
Query: 1305 AKGFRQKEGYDFFDTYSPVTRITSIRVLIAIAALHNLEIHQMDVKTAFLNGELEEEIYME 1484
AKG+ QKEG DFFDTYSPV R+T+IRVL+++AA H L +HQMDVKTAFLNGEL+EEIYM+
Sbjct: 949 AKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMD 1008
Query: 1485 QPEGYIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDSTMKSNGFKINECDKCVYIKGTTN 1664
QP+G++ GQE KVCKL+KSLYGLKQAPKQWHEKFD T+ S GF +NE DKCVY +
Sbjct: 1009 QPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGG 1068
Query: 1665 DYVIVCLYVDDMLIMGSSHDLIMKTKNMLKKNFDMKDMGLSDVILGIKISRTSDGIVLSQ 1844
+ VI+CLYVDD+LI G++ ++I + K+ L +NFDMKD+G++DVIL IK+ R +GI L Q
Sbjct: 1069 EGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQ 1128
Query: 1845 SHYVESILRMFNAFDSAPAKTPVDLSLHLAKNRGEPVSQLEYARVIGSLMYLTNCTRPDI 2024
SHYVE IL F DS P+ TP D SL L KN+ +QLEY+++IGSLMYL + TRPDI
Sbjct: 1129 SHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDI 1188
Query: 2025 AYSVSKLSRFTSNPSTDHWKAVTRVLRYLKYTMNYGILYTRYPAVLEGYCDANWISDTKD 2204
+++VSKLSRFTSNP DHW+A+ RV+RYLK T+ G+ YT YPAVLEGY D+NWISD +
Sbjct: 1189 SFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDE 1248
Query: 2205 SKSTSGFVFTIGGGAVSWKSSKQTCIARSTMESEFIALDKAGEEAE*LRNFLEDIPCWNK 2384
K+TSG+VFT+GGGAVSW+S KQT + RSTME+E ALD A EAE LR+ L D+P K
Sbjct: 1249 IKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEK 1308
Query: 2385 PVPAVMIHCDSQSTIGRAQSSMYNGK-SRHIRRRHNTIRQLISNGVISVDYVKSKENLAD 2561
PVPA++++CD+Q+ I + SS N K SRH++RR ++R+L ++GVI++DY+++ NLAD
Sbjct: 1309 PVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLAD 1368
Query: 2562 PLTKGINRDQLYKLLRGMGLK 2624
P TKG++R+ + + MGL+
Sbjct: 1369 PFTKGLSRNVIDNASKEMGLR 1389
Score = 416 bits (1069), Expect = e-113
Identities = 204/374 (54%), Positives = 280/374 (74%), Gaps = 2/374 (0%)
Frame = +1
Query: 1 DVLHVPDIRKNLVSGPLLSKAGFRLVFESDKFVMTKNGQFLCKGYLDKGLFKMSVMSVFR 180
+V HVP I +NLVSG L++ GF+LVFES+K V++K+G F+ KGY GLF+ S +S F
Sbjct: 447 NVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFS-LSDFC 505
Query: 181 QEAKNKNVTSVYLLDCSNLWHDRLGHVNFNTIKRLVNLELIPTFKTDSQDKCEICVEAKL 360
++ N SV D +N+WH RL H+NF + RL ++ LIP F KC CV++K
Sbjct: 506 NKSVNHICGSVD--DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQ 563
Query: 361 AKAPFHSVT-RSTKPLELIHTDVCDLKLVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEA 537
+ P + R+ PLEL+H+D+C++ V T+GGK+YF+T IDD TR+CYVYLLK+KDEA
Sbjct: 564 PRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEA 623
Query: 538 LVAFKTYKNEVENQLNLKIKMIRSDRGGEYVA-PFEEFCSGAGIIHQTTAPYSPQSNGVA 714
L FK YK EVENQL+ KIK +RSDRGGE+ + F+ FC GIIH+ T PYSP+SNG+A
Sbjct: 624 LDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIA 683
Query: 715 ERKNRTLKEMMNAMLISSGLPQNLWGEAILSANYILNKIPHKGKNETPYELWKGRKPSYK 894
ERKNRTL +++NAML ++GLP+ WGEA+L++N++LN+IP++ K++TPYE+W GRKPS
Sbjct: 684 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRIPNRNKDKTPYEIWIGRKPSLS 743
Query: 895 YLKVWGCLAKVEVPKPKQVRIGPKTIDCAFIGYANNSSAYRFLVHKSAIPDINEGMIIES 1074
YL+ WGCLAKV VP K+ ++GPKT+DC F+GYA++S AYRFL+ KS +PD++ G I+ES
Sbjct: 744 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMES 803
Query: 1075 RNAVFFENIFPNKE 1116
R+A FFE+ FP K+
Sbjct: 804 RDATFFESFFPMKD 817
>gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
Length = 1302
Score = 628 bits (1619), Expect = e-177
Identities = 299/501 (59%), Positives = 394/501 (78%), Gaps = 1/501 (0%)
Frame = +3
Query: 1125 NPEAPLWKEAINNEIDSIMQNHTWELVDLPPGCKPLGCKWILKRKYKADGSIDKYKARLV 1304
+P+A WKEA+ +E+DSI+ N TWE+ + P GCKP+GCKW+ K+K + DG+I+KYKARLV
Sbjct: 800 SPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV 859
Query: 1305 AKGFRQKEGYDFFDTYSPVTRITSIRVLIAIAALHNLEIHQMDVKTAFLNGELEEEIYME 1484
AKG+ QKEG DFFDTYSPV R+T+IRVL+++AA H L +HQMDVKTAFLNGEL+EEIYM+
Sbjct: 860 AKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMD 919
Query: 1485 QPEGYIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDSTMKSNGFKINECDKCVYIKGTTN 1664
QP+G++ GQE KVCKL+KSLYGLKQAPKQWHEKFD T+ S GF +NE DKCVY +
Sbjct: 920 QPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGG 979
Query: 1665 DYVIVCLYVDDMLIMGSSHDLIMKTKNMLKKNFDMKDMGLSDVILGIKISRTSDGIVLSQ 1844
+ VI+CLYVDD+LI G++ ++I + K+ L +NFDMKD+G++DVIL IK+ R +GI L Q
Sbjct: 980 EGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQ 1039
Query: 1845 SHYVESILRMFNAFDSAPAKTPVDLSLHLAKNRGEPVSQLEYARVIGSLMYLTNCTRPDI 2024
SHYVE IL F DS P+ TP D SL L KN+ +QLEY+++IGSLMYL + TRPDI
Sbjct: 1040 SHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDI 1099
Query: 2025 AYSVSKLSRFTSNPSTDHWKAVTRVLRYLKYTMNYGILYTRYPAVLEGYCDANWISDTKD 2204
+++VSKLSRFTSNP DHW+A+ RV+RYLK T+ G+ YT YPAVLEGY D+NWISD +
Sbjct: 1100 SFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDE 1159
Query: 2205 SKSTSGFVFTIGGGAVSWKSSKQTCIARSTMESEFIALDKAGEEAE*LRNFLEDIPCWNK 2384
K+TSG+VFT+GGGAVSW+S KQT + RSTME+E ALD A EAE LR+ L D+P K
Sbjct: 1160 IKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEK 1219
Query: 2385 PVPAVMIHCDSQSTIGRAQSSMYNGK-SRHIRRRHNTIRQLISNGVISVDYVKSKENLAD 2561
PVPA++++CD+Q+ I + SS N K SRH++RR ++R+L ++GVI++DY+++ NLAD
Sbjct: 1220 PVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLAD 1279
Query: 2562 PLTKGINRDQLYKLLRGMGLK 2624
P TKG++R+ + + MGL+
Sbjct: 1280 PFTKGLSRNVIDNASKEMGLR 1300
Score = 413 bits (1062), Expect = e-112
Identities = 202/374 (54%), Positives = 279/374 (74%), Gaps = 2/374 (0%)
Frame = +1
Query: 1 DVLHVPDIRKNLVSGPLLSKAGFRLVFESDKFVMTKNGQFLCKGYLDKGLFKMSVMSVFR 180
+V HVP I +NLVSG L++ GF+LVFES+K V++K+G F+ KGY GLF+ S +S F
Sbjct: 358 NVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFS-LSDFC 416
Query: 181 QEAKNKNVTSVYLLDCSNLWHDRLGHVNFNTIKRLVNLELIPTFKTDSQDKCEICVEAKL 360
++ N SV D +N+WH RL H+NF + RL ++ LIP F KC CV++K
Sbjct: 417 NKSVNHICGSVD--DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQ 474
Query: 361 AKAPFHSVT-RSTKPLELIHTDVCDLKLVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEA 537
+ P + R+ PLEL+H+D+C++ V T+GGK+YF+T IDD TR+CYVYLLK+KDEA
Sbjct: 475 PRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEA 534
Query: 538 LVAFKTYKNEVENQLNLKIKMIRSDRGGEYVA-PFEEFCSGAGIIHQTTAPYSPQSNGVA 714
L FK YK EVENQL+ KIK +RSDRGGE+ + F+ FC GIIH+ T PYSP+SNG+A
Sbjct: 535 LDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIA 594
Query: 715 ERKNRTLKEMMNAMLISSGLPQNLWGEAILSANYILNKIPHKGKNETPYELWKGRKPSYK 894
ERKNRTL +++NAML ++GLP+ WGEA+L++N++LN++P++ K++TPYE+W GRKP
Sbjct: 595 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPLLS 654
Query: 895 YLKVWGCLAKVEVPKPKQVRIGPKTIDCAFIGYANNSSAYRFLVHKSAIPDINEGMIIES 1074
YL+ WGCLAKV VP K+ ++GPKT+DC F+GYA++S AYRFL+ KS +PD++ G I+ES
Sbjct: 655 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMES 714
Query: 1075 RNAVFFENIFPNKE 1116
R+A FFE+ FP K+
Sbjct: 715 RDATFFESFFPMKD 728
>gb|ABA91402.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 2027
Score = 627 bits (1618), Expect = e-177
Identities = 299/501 (59%), Positives = 394/501 (78%), Gaps = 1/501 (0%)
Frame = +3
Query: 1125 NPEAPLWKEAINNEIDSIMQNHTWELVDLPPGCKPLGCKWILKRKYKADGSIDKYKARLV 1304
+P+A WKEA+ +E+DSI+ N TWE+ + P GCKP+GCKW+ K+K + DG+I+KYKARLV
Sbjct: 995 SPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV 1054
Query: 1305 AKGFRQKEGYDFFDTYSPVTRITSIRVLIAIAALHNLEIHQMDVKTAFLNGELEEEIYME 1484
AKG+ QKEG DFFDTYSPV R+T+IRVL+++AA H L +HQMDVKTAFLNGEL+EEIYM+
Sbjct: 1055 AKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMD 1114
Query: 1485 QPEGYIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDSTMKSNGFKINECDKCVYIKGTTN 1664
QP+G++ GQE KVCKL+KSLYGLKQAPKQWHEKFD T+ S GF +NE DKCVY +
Sbjct: 1115 QPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFGVNEADKCVYYRHGGG 1174
Query: 1665 DYVIVCLYVDDMLIMGSSHDLIMKTKNMLKKNFDMKDMGLSDVILGIKISRTSDGIVLSQ 1844
+ VI+CLYVDD+LI G++ ++I + K+ L +NFDMKD+G++DVIL IK+ R +GI L Q
Sbjct: 1175 EGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQ 1234
Query: 1845 SHYVESILRMFNAFDSAPAKTPVDLSLHLAKNRGEPVSQLEYARVIGSLMYLTNCTRPDI 2024
SHYVE IL F DS P+ TP D SL L KN+ +QLEY+++IGSLMYL + TRPDI
Sbjct: 1235 SHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDI 1294
Query: 2025 AYSVSKLSRFTSNPSTDHWKAVTRVLRYLKYTMNYGILYTRYPAVLEGYCDANWISDTKD 2204
+++VSKLSRFTSNP DHW+A+ RV+RYLK T+ G+ YT YPAVLEGY D+NWISD +
Sbjct: 1295 SFAVSKLSRFTSNPGDDHWRALERVMRYLKDTVELGLHYTGYPAVLEGYSDSNWISDVDE 1354
Query: 2205 SKSTSGFVFTIGGGAVSWKSSKQTCIARSTMESEFIALDKAGEEAE*LRNFLEDIPCWNK 2384
K+TSG+VFT+GGGAVSW+S KQT + RSTME+E ALD A EAE LR+ L D+P K
Sbjct: 1355 IKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEK 1414
Query: 2385 PVPAVMIHCDSQSTIGRAQSSMYNGK-SRHIRRRHNTIRQLISNGVISVDYVKSKENLAD 2561
PVPA++++CD+Q+ I + SS N K SRH++RR ++R+L ++GVI++DY+++ NLAD
Sbjct: 1415 PVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLAD 1474
Query: 2562 PLTKGINRDQLYKLLRGMGLK 2624
P TKG++R+ + + MGL+
Sbjct: 1475 PFTKGLSRNVIDNASKEMGLR 1495
Score = 408 bits (1049), Expect = e-111
Identities = 201/374 (53%), Positives = 277/374 (74%), Gaps = 2/374 (0%)
Frame = +1
Query: 1 DVLHVPDIRKNLVSGPLLSKAGFRLVFESDKFVMTKNGQFLCKGYLDKGLFKMSVMSVFR 180
+V HVP I +NLVSG L++ GF+LVFES+K V++K+G + KGY GLF+ S +S F
Sbjct: 553 NVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYSIGKGYECGGLFRFS-LSDFC 611
Query: 181 QEAKNKNVTSVYLLDCSNLWHDRLGHVNFNTIKRLVNLELIPTFKTDSQDKCEICVEAKL 360
++ N SV D +N+WH RL H+NF + RL ++ LIP F KC CV++K
Sbjct: 612 NKSVNHICGSVD--DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQ 669
Query: 361 AKAPFHSVT-RSTKPLELIHTDVCDLKLVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEA 537
+ P + R+ PLEL+H+D+C++ V T GK+YF+T IDD TR+CYVYLLK+KDEA
Sbjct: 670 PRKPHKAAEERNLAPLELLHSDLCEMNGVLTNCGKRYFMTLIDDATRFCYVYLLKTKDEA 729
Query: 538 LVAFKTYKNEVENQLNLKIKMIRSDRGGEYVA-PFEEFCSGAGIIHQTTAPYSPQSNGVA 714
L FK YK EVENQL+ KIK +RSDRGGE+ + F+ FC GIIH+ T PYSP+SNG+A
Sbjct: 730 LDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIA 789
Query: 715 ERKNRTLKEMMNAMLISSGLPQNLWGEAILSANYILNKIPHKGKNETPYELWKGRKPSYK 894
ERKNRTL +++NAML ++GLP+ WGEA+L++N++LN++P++ K++TPYE+W GRKPS
Sbjct: 790 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLS 849
Query: 895 YLKVWGCLAKVEVPKPKQVRIGPKTIDCAFIGYANNSSAYRFLVHKSAIPDINEGMIIES 1074
YL+ WGCLAKV VP K+ ++GPKT+DC F+GYA++S AYRFL+ KS +PD++ G I+ES
Sbjct: 850 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMES 909
Query: 1075 RNAVFFENIFPNKE 1116
R+A FFE+ FP K+
Sbjct: 910 RDATFFESFFPMKD 923
>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
Length = 1302
Score = 627 bits (1617), Expect = e-176
Identities = 298/501 (59%), Positives = 394/501 (78%), Gaps = 1/501 (0%)
Frame = +3
Query: 1125 NPEAPLWKEAINNEIDSIMQNHTWELVDLPPGCKPLGCKWILKRKYKADGSIDKYKARLV 1304
+P+A WKEA+ +E+DSI+ N TWE+ + P GCKP+GCKW+ K+K + DG+I+KYKARLV
Sbjct: 800 SPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV 859
Query: 1305 AKGFRQKEGYDFFDTYSPVTRITSIRVLIAIAALHNLEIHQMDVKTAFLNGELEEEIYME 1484
AKG+ QKEG DFFDTYSPV R+T+IRVL+++AA H L +HQMDVKTAFLNGEL+EEIYM+
Sbjct: 860 AKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMD 919
Query: 1485 QPEGYIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDSTMKSNGFKINECDKCVYIKGTTN 1664
QP+G++ GQE KVCKL+KSLYGLKQAPKQWHEKFD T+ S GF +NE DKCVY +
Sbjct: 920 QPDGFVLEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGG 979
Query: 1665 DYVIVCLYVDDMLIMGSSHDLIMKTKNMLKKNFDMKDMGLSDVILGIKISRTSDGIVLSQ 1844
+ VI+CLYVDD+LI G++ ++I + K+ L +NFDMKD+G++DVIL IK+ R +GI L Q
Sbjct: 980 EGVILCLYVDDILIFGTNIEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQ 1039
Query: 1845 SHYVESILRMFNAFDSAPAKTPVDLSLHLAKNRGEPVSQLEYARVIGSLMYLTNCTRPDI 2024
SHYVE IL F DS P+ TP D SL L KN+ +QLEY+++IGSLMYL + TRPDI
Sbjct: 1040 SHYVEKILNRFGYIDSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDI 1099
Query: 2025 AYSVSKLSRFTSNPSTDHWKAVTRVLRYLKYTMNYGILYTRYPAVLEGYCDANWISDTKD 2204
+++VSKLSRFTSNP DHW+A+ RV+RYLK T+ G+ YT YPAVLEGY D+NWISD +
Sbjct: 1100 SFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDE 1159
Query: 2205 SKSTSGFVFTIGGGAVSWKSSKQTCIARSTMESEFIALDKAGEEAE*LRNFLEDIPCWNK 2384
K+TSG+VFT+GGGAVSW+S KQT + RSTME+E ALD A EAE LR+ L D+P K
Sbjct: 1160 IKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEK 1219
Query: 2385 PVPAVMIHCDSQSTIGRAQSSMYNGK-SRHIRRRHNTIRQLISNGVISVDYVKSKENLAD 2561
PVPA++++CD+Q+ I + +S N K SRH++RR ++R+L ++GVI++DY+++ NLAD
Sbjct: 1220 PVPAILMNCDNQTVIVKVNNSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLAD 1279
Query: 2562 PLTKGINRDQLYKLLRGMGLK 2624
P TKG++R+ + + MGL+
Sbjct: 1280 PFTKGLSRNVIDNASKEMGLR 1300
Score = 416 bits (1068), Expect = e-113
Identities = 203/374 (54%), Positives = 280/374 (74%), Gaps = 2/374 (0%)
Frame = +1
Query: 1 DVLHVPDIRKNLVSGPLLSKAGFRLVFESDKFVMTKNGQFLCKGYLDKGLFKMSVMSVFR 180
+V HVP I +NLVSG L++ GF+LVFES+K V++K+G F+ KGY GLF+ S +S F
Sbjct: 358 NVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFS-LSDFC 416
Query: 181 QEAKNKNVTSVYLLDCSNLWHDRLGHVNFNTIKRLVNLELIPTFKTDSQDKCEICVEAKL 360
++ N SV D +N+WH RL H+NF + RL ++ LIP F KC CV++K
Sbjct: 417 NKSVNHICGSVD--DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQ 474
Query: 361 AKAPFHSVT-RSTKPLELIHTDVCDLKLVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEA 537
+ P + R+ PLEL+H+D+C++ V T+GGK+YF+T IDD TR+CYVYLLK+KDEA
Sbjct: 475 PRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEA 534
Query: 538 LVAFKTYKNEVENQLNLKIKMIRSDRGGEYVA-PFEEFCSGAGIIHQTTAPYSPQSNGVA 714
L FK YK EVENQL+ KIK +RSDRGGE+ + F+ FC GIIH+ T PYSP+SNG+A
Sbjct: 535 LDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIA 594
Query: 715 ERKNRTLKEMMNAMLISSGLPQNLWGEAILSANYILNKIPHKGKNETPYELWKGRKPSYK 894
ERKNRTL +++NAML ++GLP+ WGEA+L++N++LN++P++ K++TPYE+W GRKPS
Sbjct: 595 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLS 654
Query: 895 YLKVWGCLAKVEVPKPKQVRIGPKTIDCAFIGYANNSSAYRFLVHKSAIPDINEGMIIES 1074
YL+ WGCLAKV VP K+ ++GPKT+DC F+GYA++S AYRFL+ KS +PD++ G I+ES
Sbjct: 655 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMES 714
Query: 1075 RNAVFFENIFPNKE 1116
R+A FFE+ FP K+
Sbjct: 715 RDATFFESFFPMKD 728
>gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1302
Score = 627 bits (1616), Expect = e-176
Identities = 299/501 (59%), Positives = 394/501 (78%), Gaps = 1/501 (0%)
Frame = +3
Query: 1125 NPEAPLWKEAINNEIDSIMQNHTWELVDLPPGCKPLGCKWILKRKYKADGSIDKYKARLV 1304
+P+A WKEA+ +E+DSI+ N TWE+ + P GCKP+GCKW+ K+K + DG+I+KYKARLV
Sbjct: 800 SPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV 859
Query: 1305 AKGFRQKEGYDFFDTYSPVTRITSIRVLIAIAALHNLEIHQMDVKTAFLNGELEEEIYME 1484
AKG+ QKEG DFFDTYSPV R+T+IRVL+++AA H L +HQMDVKTAFLNGEL+EEIYM+
Sbjct: 860 AKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMD 919
Query: 1485 QPEGYIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDSTMKSNGFKINECDKCVYIKGTTN 1664
QP+G++ GQE KVCKL+KSLYGLKQAPKQWHEKFD T+ S GF +NE DKCVY +
Sbjct: 920 QPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGG 979
Query: 1665 DYVIVCLYVDDMLIMGSSHDLIMKTKNMLKKNFDMKDMGLSDVILGIKISRTSDGIVLSQ 1844
+ VI+CLYVDD+LI G++ ++I + K+ L +NFDMKD+G++DVIL IK+ R +GI L Q
Sbjct: 980 EGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQ 1039
Query: 1845 SHYVESILRMFNAFDSAPAKTPVDLSLHLAKNRGEPVSQLEYARVIGSLMYLTNCTRPDI 2024
SHYVE IL F DS P+ TP D SL L KN+ +QLEY+++IGSLMYL + TRPDI
Sbjct: 1040 SHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDI 1099
Query: 2025 AYSVSKLSRFTSNPSTDHWKAVTRVLRYLKYTMNYGILYTRYPAVLEGYCDANWISDTKD 2204
+++VSKLSRFTSNP DHW+A+ RV+RYLK T+ G+ YTRYPAVLEGY D+NWISD +
Sbjct: 1100 SFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTRYPAVLEGYSDSNWISDVDE 1159
Query: 2205 SKSTSGFVFTIGGGAVSWKSSKQTCIARSTMESEFIALDKAGEEAE*LRNFLEDIPCWNK 2384
K+TSG+VFT+GGGAVSW+S KQT + RSTME+E ALD A EAE LR+ L D+P K
Sbjct: 1160 IKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEK 1219
Query: 2385 PVPAVMIHCDSQSTIGRAQSSMYNGK-SRHIRRRHNTIRQLISNGVISVDYVKSKENLAD 2561
VPA++++CD+Q+ I + SS N K SRH++RR ++R+L ++GVI++DY+++ NLAD
Sbjct: 1220 LVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLAD 1279
Query: 2562 PLTKGINRDQLYKLLRGMGLK 2624
P TKG++R+ + + MGL+
Sbjct: 1280 PFTKGLSRNVIDNASKEMGLR 1300
Score = 416 bits (1070), Expect = e-113
Identities = 203/374 (54%), Positives = 281/374 (75%), Gaps = 2/374 (0%)
Frame = +1
Query: 1 DVLHVPDIRKNLVSGPLLSKAGFRLVFESDKFVMTKNGQFLCKGYLDKGLFKMSVMSVFR 180
+V HVP I +NLVSG L++ GF+LVFES+K V++K+G F+ KGY GLF+ S +S F
Sbjct: 358 NVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFS-LSDFC 416
Query: 181 QEAKNKNVTSVYLLDCSNLWHDRLGHVNFNTIKRLVNLELIPTFKTDSQDKCEICVEAKL 360
++ N SV D +N+WH RL H+NF + RL ++ LIP F KC CV++K
Sbjct: 417 NKSVNHICGSVD--DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQ 474
Query: 361 AKAPFHSVT-RSTKPLELIHTDVCDLKLVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEA 537
+ P + R+ PLEL+H+D+C++ V T+GGK+YF+TFIDD TR+CYVYLLK+KDEA
Sbjct: 475 PRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEA 534
Query: 538 LVAFKTYKNEVENQLNLKIKMIRSDRGGEYVA-PFEEFCSGAGIIHQTTAPYSPQSNGVA 714
L FK YK EVENQL+ KIK +RSDRGGE+ + F+ FC GIIH+ T PYSP+SNG+A
Sbjct: 535 LDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIA 594
Query: 715 ERKNRTLKEMMNAMLISSGLPQNLWGEAILSANYILNKIPHKGKNETPYELWKGRKPSYK 894
+RKNRTL +++NAML ++GLP+ WGEA+L++N++LN++P++ K++TPYE+W GRKPS
Sbjct: 595 KRKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLS 654
Query: 895 YLKVWGCLAKVEVPKPKQVRIGPKTIDCAFIGYANNSSAYRFLVHKSAIPDINEGMIIES 1074
YL+ WGCLAKV VP K+ ++GPKT+DC F+GYA++S AYRFL+ KS +PD++ G I+ES
Sbjct: 655 YLRTWGCLAKVNVPITKKHKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMES 714
Query: 1075 RNAVFFENIFPNKE 1116
R+A FFE+ FP K+
Sbjct: 715 RDATFFESFFPMKD 728
>emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]
Length = 1319
Score = 626 bits (1615), Expect = e-176
Identities = 298/501 (59%), Positives = 393/501 (78%), Gaps = 1/501 (0%)
Frame = +3
Query: 1125 NPEAPLWKEAINNEIDSIMQNHTWELVDLPPGCKPLGCKWILKRKYKADGSIDKYKARLV 1304
+P+A WKEA+ +E+DSI+ N TWE+ + P GCKP+GCKW+ K+K + DG+I+KYKARLV
Sbjct: 800 SPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV 859
Query: 1305 AKGFRQKEGYDFFDTYSPVTRITSIRVLIAIAALHNLEIHQMDVKTAFLNGELEEEIYME 1484
AKG+ QKEG DFFDTYSPV R+T+IRVL+++AA H L +HQMDVKTAFLNGEL+EEIYM+
Sbjct: 860 AKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMD 919
Query: 1485 QPEGYIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDSTMKSNGFKINECDKCVYIKGTTN 1664
QP+G++ GQE KVCKL+KSLYGLKQAPKQWHEKFD T+ S GF +NE DKCVY +
Sbjct: 920 QPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGG 979
Query: 1665 DYVIVCLYVDDMLIMGSSHDLIMKTKNMLKKNFDMKDMGLSDVILGIKISRTSDGIVLSQ 1844
+ VI+CLYVDD+LI G++ ++I + K+ L +NFDMKD+G++DVIL IK+ R +GI L Q
Sbjct: 980 EGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQ 1039
Query: 1845 SHYVESILRMFNAFDSAPAKTPVDLSLHLAKNRGEPVSQLEYARVIGSLMYLTNCTRPDI 2024
SHYVE IL F DS P+ TP D SL L KN+ +QLEY+++IGSLMYL + TRPDI
Sbjct: 1040 SHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDI 1099
Query: 2025 AYSVSKLSRFTSNPSTDHWKAVTRVLRYLKYTMNYGILYTRYPAVLEGYCDANWISDTKD 2204
+++VSKLSRFTSNP DHW+ + RV+RYLK T+ G+ YT YPAVLEGY D+NWISD +
Sbjct: 1100 SFAVSKLSRFTSNPGDDHWRVLERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDE 1159
Query: 2205 SKSTSGFVFTIGGGAVSWKSSKQTCIARSTMESEFIALDKAGEEAE*LRNFLEDIPCWNK 2384
K+TSG+VFT+GGGAVSW+S KQT + RSTME+E ALD A EAE LR+ L D+P K
Sbjct: 1160 IKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEK 1219
Query: 2385 PVPAVMIHCDSQSTIGRAQSSMYNGK-SRHIRRRHNTIRQLISNGVISVDYVKSKENLAD 2561
PVPA++++CD+Q+ I + SS N K SRH++RR ++R+L ++GVI++DY+++ NLAD
Sbjct: 1220 PVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLAD 1279
Query: 2562 PLTKGINRDQLYKLLRGMGLK 2624
P TKG++R+ + + MGL+
Sbjct: 1280 PFTKGLSRNVIDNASKEMGLR 1300
Score = 414 bits (1065), Expect = e-112
Identities = 202/374 (54%), Positives = 279/374 (74%), Gaps = 2/374 (0%)
Frame = +1
Query: 1 DVLHVPDIRKNLVSGPLLSKAGFRLVFESDKFVMTKNGQFLCKGYLDKGLFKMSVMSVFR 180
+V HVP I +NLVSG L++ GF+LVFES+K V++K+G F+ KGY GLF+ S +S F
Sbjct: 358 NVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFS-LSDFC 416
Query: 181 QEAKNKNVTSVYLLDCSNLWHDRLGHVNFNTIKRLVNLELIPTFKTDSQDKCEICVEAKL 360
++ N SV D +N+WH RL H+NF + RL ++ LIP F KC CV++K
Sbjct: 417 NKSVNHICGSVD--DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQ 474
Query: 361 AKAPFHSVT-RSTKPLELIHTDVCDLKLVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEA 537
+ P + R+ PLEL+H+D+C++ V T+GGK+YF+T IDD TR+CYVYLLK+KDEA
Sbjct: 475 PRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEA 534
Query: 538 LVAFKTYKNEVENQLNLKIKMIRSDRGGEYVA-PFEEFCSGAGIIHQTTAPYSPQSNGVA 714
L FK YK EVENQL+ +I +RSDRGGE+ + F+ FC GIIH+ T PYSP+SNG+A
Sbjct: 535 LDYFKIYKAEVENQLDRRINRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIA 594
Query: 715 ERKNRTLKEMMNAMLISSGLPQNLWGEAILSANYILNKIPHKGKNETPYELWKGRKPSYK 894
ERKNRTL +++NAML ++GLP+ WGEA+L++NY+LN++P++ K++TPYE+W GRKPS
Sbjct: 595 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNYVLNRVPNRNKDKTPYEIWIGRKPSLS 654
Query: 895 YLKVWGCLAKVEVPKPKQVRIGPKTIDCAFIGYANNSSAYRFLVHKSAIPDINEGMIIES 1074
YL+ WGCLAKV VP K+ ++GPKT+DC F+GYA++S AYRFL+ KS +PD++ G I+ES
Sbjct: 655 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMES 714
Query: 1075 RNAVFFENIFPNKE 1116
R+A FFE+ FP K+
Sbjct: 715 RDATFFESFFPMKD 728
>gb|AAT58846.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1229
Score = 626 bits (1614), Expect = e-176
Identities = 298/501 (59%), Positives = 393/501 (78%), Gaps = 1/501 (0%)
Frame = +3
Query: 1125 NPEAPLWKEAINNEIDSIMQNHTWELVDLPPGCKPLGCKWILKRKYKADGSIDKYKARLV 1304
+P+A WKEA+ +E+DSI+ N TWE+ + P GCKP+GCKW+ K+K + DG+I+KYKARLV
Sbjct: 727 SPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV 786
Query: 1305 AKGFRQKEGYDFFDTYSPVTRITSIRVLIAIAALHNLEIHQMDVKTAFLNGELEEEIYME 1484
AKG+ QKEG DFFDTYSPV R+T+I VL+++AA H L +HQMDVKTAFLNGEL+EEIYM+
Sbjct: 787 AKGYTQKEGEDFFDTYSPVARLTTIHVLLSLAASHGLVVHQMDVKTAFLNGELDEEIYMD 846
Query: 1485 QPEGYIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDSTMKSNGFKINECDKCVYIKGTTN 1664
QP+G++ GQE KVCKL+KSLYGLKQAPKQWHEKFD T+ S GF +NE DKCVY +
Sbjct: 847 QPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGG 906
Query: 1665 DYVIVCLYVDDMLIMGSSHDLIMKTKNMLKKNFDMKDMGLSDVILGIKISRTSDGIVLSQ 1844
+ VI+CLYVDD+LI G++ ++I + K+ L +NFDMKD+G++DVIL IK+ R +GI L Q
Sbjct: 907 EGVILCLYVDDILIFGTNLEVINEVKSFLPQNFDMKDLGVADVILNIKLIRGENGITLLQ 966
Query: 1845 SHYVESILRMFNAFDSAPAKTPVDLSLHLAKNRGEPVSQLEYARVIGSLMYLTNCTRPDI 2024
SHYVE IL F DS P+ TP D SL L KN+ +QLEY+++IGSLMYL + TRPDI
Sbjct: 967 SHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDI 1026
Query: 2025 AYSVSKLSRFTSNPSTDHWKAVTRVLRYLKYTMNYGILYTRYPAVLEGYCDANWISDTKD 2204
+++VSKLSRFTSNP DHW+A+ RV+RYLK T+ G+ YT YPAVLEGY D+NWISD +
Sbjct: 1027 SFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDE 1086
Query: 2205 SKSTSGFVFTIGGGAVSWKSSKQTCIARSTMESEFIALDKAGEEAE*LRNFLEDIPCWNK 2384
K+TSG+VFT+GGGAVSW+S KQT + RSTME+E ALD A EAE LR+ L D+P K
Sbjct: 1087 IKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEK 1146
Query: 2385 PVPAVMIHCDSQSTIGRAQSSMYNGK-SRHIRRRHNTIRQLISNGVISVDYVKSKENLAD 2561
PVPA++++CD+Q+ I + SS N K SRH++RR ++R+L ++GVI++DY+++ NLAD
Sbjct: 1147 PVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLAD 1206
Query: 2562 PLTKGINRDQLYKLLRGMGLK 2624
P TKG++R+ + + MGL+
Sbjct: 1207 PFTKGLSRNVIDNASKEMGLR 1227
Score = 267 bits (682), Expect = 3e-68
Identities = 140/262 (53%), Positives = 188/262 (71%), Gaps = 2/262 (0%)
Frame = +1
Query: 1 DVLHVPDIRKNLVSGPLLSKAGFRLVFESDKFVMTKNGQFLCKGYLDKGLFKMSVMSVFR 180
+V HVP I +NLVSG L++ GF+LVFES+K V++K+G F+ KGY GLF+ S +S F
Sbjct: 358 NVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFS-LSDFC 416
Query: 181 QEAKNKNVTSVYLLDCSNLWHDRLGHVNFNTIKRLVNLELIPTFKTDSQDKCEICVEAKL 360
++ N SV D +N+WH RL H+NF + RL ++ LIP F KC CV++K
Sbjct: 417 YKSVNHICGSVD--DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQ 474
Query: 361 AKAPFHSVT-RSTKPLELIHTDVCDLKLVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEA 537
+ P + R+ PLEL+H+D+C++ V T+GGK+YFIT IDD TR+CYVYLLK+KDEA
Sbjct: 475 PRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFITLIDDATRFCYVYLLKTKDEA 534
Query: 538 LVAFKTYKNEVENQLNLKIKMIRSDRGGEYVA-PFEEFCSGAGIIHQTTAPYSPQSNGVA 714
L FK YK EVENQL+ KIK +RSDRGGE+ + F+ FC GIIH+ T PYSP+SNG+A
Sbjct: 535 LDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCKEHGIIHERTPPYSPESNGIA 594
Query: 715 ERKNRTLKEMMNAMLISSGLPQ 780
ERKNRTL +++NAML ++GLP+
Sbjct: 595 ERKNRTLTDLVNAMLDTAGLPK 616