BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00010189
         (2032 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlise...   937   0.0  
ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub...   916   0.0  
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...   902   0.0  
emb|CBI29879.3| unnamed protein product [Vitis vinifera]              779   0.0  
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...   779   0.0  
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...   715   0.0  
gb|EMJ04262.1| hypothetical protein PRUPE_ppa000153mg [Prunus pe...   701   0.0  
emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]   692   0.0  
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   689   0.0  
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub...   688   0.0  
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub...   685   0.0  
gb|ESW17626.1| hypothetical protein PHAVU_007G255400g [Phaseolus...   681   0.0  
gb|EOY09357.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma ca...   679   0.0  
gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Th...   679   0.0  
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub...   677   0.0  
ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Me...   676   0.0  
ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I sub...   675   0.0  
ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citr...   675   0.0  
gb|EOY09358.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma ca...   675   0.0  
gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Th...   675   0.0  

>gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlisea aurea]
          Length = 1626

 Score =  937 bits (2423), Expect = 0.0
 Identities = 474/644 (73%), Positives = 536/644 (83%)
 Frame = +2

Query: 2    LVESLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDSYKNGEED 181
            L+  +LP IWKPEPLWTGKQVI+ALLNHITRG APC V+NQ K+P  YFT D+    +ED
Sbjct: 665  LINPILPAIWKPEPLWTGKQVISALLNHITRGFAPCIVKNQTKLPSTYFT-DNPAMEDED 723

Query: 182  EDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSRLFTIFLQ 361
            EDQNAE+N LVWKNELVRGVIDKAQFGKFGLVHTVQELYGS SAG LL+A SRLFT+FLQ
Sbjct: 724  EDQNAENNFLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSESAGNLLTAFSRLFTMFLQ 783

Query: 362  IHGFTCGVDDLIILPHYDAQRKDKLEGEDVGEEVHCEFVKFKPGQIGPEELQLEIQKVIC 541
            IHGFTCGVDDL+ILP YD +RK+KLE EDVGEEVHC+F+ FKPGQIG EELQLEI+K IC
Sbjct: 784  IHGFTCGVDDLMILPDYDVKRKEKLEQEDVGEEVHCDFINFKPGQIGREELQLEIEKAIC 843

Query: 542  SDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMTTTGAKGSTV 721
             DRESATA LDMKMKNKLT KLT EGSQ+LKHLLT GLLKPFP+NCISVMTTTGAKGSTV
Sbjct: 844  RDRESATALLDMKMKNKLTMKLTTEGSQVLKHLLTDGLLKPFPQNCISVMTTTGAKGSTV 903

Query: 722  NFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTGLRPQEYYFH 901
            NFQQISAYLGQQELEGKRVPRMVSGKTLP FPPWDF SRAGGFITDRFL+GLRPQEYYFH
Sbjct: 904  NFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDFASRAGGFITDRFLSGLRPQEYYFH 963

Query: 902  CMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVH 1081
            CMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKV YDYTVRDADGSIIQF YGEDGVD H
Sbjct: 964  CMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVGYDYTVRDADGSIIQFCYGEDGVDAH 1023

Query: 1082 QTSFLKNFKALEDNRETICQKFQNQRQFNSYIEKLPEGLEEEARRFIQEVQDKSKEKQIG 1261
            +TSFLKNFKAL +N+ETI QKFQN+ QFN YI+KLPEGLEEEA  FIQ+ Q  S  KQ+ 
Sbjct: 1024 KTSFLKNFKALSNNQETIQQKFQNKHQFNFYIKKLPEGLEEEAMHFIQKAQTLSSVKQV- 1082

Query: 1262 SAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEPVGVIAAQSVG 1441
                                       + +KF+ +V+QK+LSSL  +GEPVGVIAAQS+G
Sbjct: 1083 --------------------------VDHHKFMRVVEQKFLSSLVPAGEPVGVIAAQSIG 1116

Query: 1442 EPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQWRSKHEVVSL 1621
            EPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS+VI+TP+LTCPF Q +SK   +S+
Sbjct: 1117 EPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEVIRTPMLTCPFLQRQSKPNALSV 1176

Query: 1622 VSRVKKVTVADLVESMDVQLSIHPRQVARTYKLIIKVKDTEFVPLADIHDTLKSVFLREL 1801
            +S +KK+T+ADL+ESMDV +S HP+ V R YKL +++KDTEFV L D + TLK+ FL+EL
Sbjct: 1177 ISNLKKITIADLIESMDVSISFHPK-VGRIYKLRMRLKDTEFVSLEDTYKTLKTSFLKEL 1235

Query: 1802 EDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDSGVRTQEA 1933
            EDA+ENHV+FL +V+ I +F S S  E  +E +ED +    QEA
Sbjct: 1236 EDALENHVVFLKKVAVINDFASHSRFEALSEGEEDKASDGAQEA 1279


>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            tuberosum]
          Length = 1675

 Score =  916 bits (2367), Expect = 0.0
 Identities = 456/650 (70%), Positives = 546/650 (84%), Gaps = 7/650 (1%)
 Frame = +2

Query: 2    LVESLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDS----YKN 169
            +V+++LP +WKP+PLWTGKQVITALLNH+T+G APCTV+N+GKIP  YF  +S    Y++
Sbjct: 703  VVQTVLPAVWKPKPLWTGKQVITALLNHLTKGCAPCTVKNKGKIPYPYFLSESRLVEYQS 762

Query: 170  GEEDEDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSRLFT 349
             EE ED+ AE+  L+WKNELVRGVIDKAQFGKFGLVHT+QELYGSN AGILLSALSRLFT
Sbjct: 763  REEQEDRTAENEFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSALSRLFT 822

Query: 350  IFLQIHGFTCGVDDLIILPHYDAQRKDKLEGEDVGEEVHCEFVKFKPGQIGPEELQLEIQ 529
            IFLQ+HGFTCGVDDL+ILPHYD +RK++LEG+DVGEE HC+FVKFK G+IGP ELQLEI+
Sbjct: 823  IFLQLHGFTCGVDDLVILPHYDIRRKEELEGDDVGEEAHCDFVKFKRGEIGPLELQLEIE 882

Query: 530  KVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMTTTGAK 709
            K + S++E+ATA+LDMKMKNKL NK    GSQ  K LL  GLLKPFP+NCI++MT TGAK
Sbjct: 883  KAMSSNKEAATAALDMKMKNKLANK----GSQFNKELLLKGLLKPFPRNCIALMTITGAK 938

Query: 710  GSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTGLRPQE 889
            GSTVNFQQIS+YLGQQELEGKRVPRMVSGKTLPCFPPWD  SRAGG+++DRFL+GLRPQE
Sbjct: 939  GSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPPWDCASRAGGYVSDRFLSGLRPQE 998

Query: 890  YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDG 1069
            YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDG
Sbjct: 999  YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDG 1058

Query: 1070 VDVHQTSFLKNFKALEDNRETICQKFQNQRQFNSYIEKLPEGLEEEARRFIQEVQDKSKE 1249
            VDVH+TSFLKNFKAL++N+ETICQK ++ R+ NSYIEKLP+GLEE+ + F  E + K  E
Sbjct: 1059 VDVHRTSFLKNFKALKNNQETICQKLRHGRKLNSYIEKLPDGLEEKVKHF-WEKRTKKLE 1117

Query: 1250 KQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEPVGVIAA 1429
            K++G  +++                 K  ++E+  F+ELV+QKY SSLA SGEPVGV+A 
Sbjct: 1118 KKLGKLVKK-------------EEMVKQLKEEEADFLELVRQKYFSSLADSGEPVGVLAG 1164

Query: 1430 QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQWRSKHE 1609
            QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS+ IKTPILTCPF  W+SK++
Sbjct: 1165 QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEAIKTPILTCPFLGWQSKND 1224

Query: 1610 VVSLVSRVKKVTVADLVESMDVQ---LSIHPRQVARTYKLIIKVKDTEFVPLADIHDTLK 1780
              SL+++VKK+TVAD++ESM+V+   LSI+  QV++ YKL +K+K  +FV   D   TLK
Sbjct: 1225 AQSLLAKVKKITVADMIESMEVKLLPLSIYNHQVSQLYKLTVKLKKHDFVSSEDCEYTLK 1284

Query: 1781 SVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDSGVRTQE 1930
             VFLRELEDAIE+H+  LS+++GI+NF +SS S  S+E +E+ S  R +E
Sbjct: 1285 FVFLRELEDAIESHLALLSKINGIQNFKTSSESVDSDETEENASSTRHEE 1334


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            lycopersicum]
          Length = 1677

 Score =  902 bits (2331), Expect = 0.0
 Identities = 451/650 (69%), Positives = 539/650 (82%), Gaps = 7/650 (1%)
 Frame = +2

Query: 2    LVESLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDS----YKN 169
            +V+++LP +WKP+PLWTGKQVITALLNH+T G  PCTV+N+GKIP  YF  +S    Y++
Sbjct: 703  VVQTVLPAVWKPKPLWTGKQVITALLNHLTNGCPPCTVKNKGKIPYAYFLSESRLVEYQS 762

Query: 170  GEEDEDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSRLFT 349
             EE ED+ AE+  L+WKNELVRGVIDKAQFGKFGLVHT+QELYGSN AGILLSALSRLFT
Sbjct: 763  REEQEDRTAENEFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSALSRLFT 822

Query: 350  IFLQIHGFTCGVDDLIILPHYDAQRKDKLEGEDVGEEVHCEFVKFKPGQIGPEELQLEIQ 529
            IFLQ+HGFTCG+DDL+ILPHYD +RK++LEG+DVGEE HC+FVKFK G+IGP ELQLEI+
Sbjct: 823  IFLQLHGFTCGIDDLVILPHYDIRRKEELEGDDVGEEAHCDFVKFKRGEIGPLELQLEIE 882

Query: 530  KVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMTTTGAK 709
            K I S++E ATA+LDMKMKNKL NK    GSQ  K LL  GLLKPFP+NCI++MT TGAK
Sbjct: 883  KAISSNKEVATAALDMKMKNKLANK----GSQFNKELLLKGLLKPFPRNCIALMTITGAK 938

Query: 710  GSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTGLRPQE 889
            GSTVNFQQIS+YLGQQELEGKRVPRMVSGKTLPCFP WD  SRAGG+++DRFL+GLRPQE
Sbjct: 939  GSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPAWDCASRAGGYVSDRFLSGLRPQE 998

Query: 890  YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDG 1069
            YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDG
Sbjct: 999  YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDG 1058

Query: 1070 VDVHQTSFLKNFKALEDNRETICQKFQNQRQFNSYIEKLPEGLEEEARRFIQEVQDKSKE 1249
            VDVH+TSFLKNFKAL++N+ETICQK ++  + NSYIEKLP+GL E+ + F  E + K  E
Sbjct: 1059 VDVHRTSFLKNFKALKNNQETICQKLRHGCKLNSYIEKLPDGLGEKVKHF-WESKTKKLE 1117

Query: 1250 KQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEPVGVIAA 1429
            K++G  +++                 K  ++E+  F+ELV QKY SSLA SGEPVGV+A 
Sbjct: 1118 KKLGMLVKK-------------EEMVKQLKEEEADFLELVGQKYFSSLADSGEPVGVLAG 1164

Query: 1430 QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQWRSKHE 1609
            QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS+ IKTPI+TCPF  W+SK++
Sbjct: 1165 QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEAIKTPIMTCPFLGWKSKND 1224

Query: 1610 VVSLVSRVKKVTVADLVESMDVQ---LSIHPRQVARTYKLIIKVKDTEFVPLADIHDTLK 1780
              SL+++VKK+TVAD++ESM+V+   LSI+  QV++ YKL +K+K  +FV   D   TLK
Sbjct: 1225 AQSLLAKVKKITVADMIESMEVKLLPLSIYNHQVSQLYKLTVKLKKHDFVSSEDCEYTLK 1284

Query: 1781 SVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDSGVRTQE 1930
             VFLRELEDAIE+H+  LS+++GI+NF +SS S  S+E +E+ S  R +E
Sbjct: 1285 FVFLRELEDAIESHLALLSKINGIQNFKTSSESVDSDETEENASSTRREE 1334


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score =  779 bits (2012), Expect = 0.0
 Identities = 402/661 (60%), Positives = 494/661 (74%), Gaps = 24/661 (3%)
 Frame = +2

Query: 5    VESLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTG--DSYKNGEE 178
            ++ LLP IWKPEPLW+GKQVITA+LNHITRGR P T E  GKIP+ YF    D  K+G+ 
Sbjct: 696  MQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKG 755

Query: 179  D------------EDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGIL 322
                         E ++ E+ LL+ KNELVRGVIDKAQF K+GLVH VQELYGSN+AGIL
Sbjct: 756  KDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGIL 815

Query: 323  LSALSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLE-GEDVGEEVHCEFVKFKPGQI 499
            LS LSRLFT+FLQ+HGFTCGVDDL+I P+YD  RK +L+  E++GE VHC+F+    G+I
Sbjct: 816  LSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHGKI 875

Query: 500  GPEELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNC 679
             P +LQ+E++K+I S+ E+A   LD  MKN+L N+LT   S++ K LL  GL+KPFPKNC
Sbjct: 876  DPVKLQVEVEKIILSNGEAAITRLDRMMKNEL-NELT---SKVNKDLLLKGLVKPFPKNC 931

Query: 680  ISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITD 859
            +S+MTTTGAKGSTVNF QIS++LGQQ+LEGKRVPRMVSGKTLPCFPPWD  +RAGGFI+D
Sbjct: 932  LSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISD 991

Query: 860  RFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGS 1039
            RFLTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LKVCYDYTVRD+DGS
Sbjct: 992  RFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGS 1051

Query: 1040 IIQFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQRQFNSYIEKLPEGLEEEARRF 1219
            I+QF YG+DGVDVHQTSF+  F+AL  N E +C+KF    +FN YI+KLP+ L ++ ++F
Sbjct: 1052 IVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQDGKFNGYIQKLPKELRKKTKKF 1111

Query: 1220 IQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQ 1399
            I+   ++ ++                              K+Q  F+ LVKQKY+SSLAQ
Sbjct: 1112 IEGFMEERQDFD--------------------------NMKKQKDFVNLVKQKYISSLAQ 1145

Query: 1400 SGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTC 1579
             GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGE+NVTLGIPRLQEILMTA++ IKTPI+TC
Sbjct: 1146 PGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTC 1205

Query: 1580 PFSQWRSKHEVVSLVSRVKKVTVADLVESMDVQL---SIHPRQVARTYKLIIKVKDTEFV 1750
            P    RSK +   L +++KKVTVAD+ ESM+V +   ++   Q    YKL +K+ +    
Sbjct: 1206 PLQMGRSKDDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYKLKMKLYEPALY 1265

Query: 1751 P------LADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDS 1912
            P      L D  +TL++VF+RELEDAI+NH++ LS++SGIKNF+  S S  S E DED S
Sbjct: 1266 PPHTGISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDEDAS 1325

Query: 1913 G 1915
            G
Sbjct: 1326 G 1326


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score =  779 bits (2012), Expect = 0.0
 Identities = 402/661 (60%), Positives = 494/661 (74%), Gaps = 24/661 (3%)
 Frame = +2

Query: 5    VESLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTG--DSYKNGEE 178
            ++ LLP IWKPEPLW+GKQVITA+LNHITRGR P T E  GKIP+ YF    D  K+G+ 
Sbjct: 767  MQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKG 826

Query: 179  D------------EDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGIL 322
                         E ++ E+ LL+ KNELVRGVIDKAQF K+GLVH VQELYGSN+AGIL
Sbjct: 827  KDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGIL 886

Query: 323  LSALSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLE-GEDVGEEVHCEFVKFKPGQI 499
            LS LSRLFT+FLQ+HGFTCGVDDL+I P+YD  RK +L+  E++GE VHC+F+    G+I
Sbjct: 887  LSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHGKI 946

Query: 500  GPEELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNC 679
             P +LQ+E++K+I S+ E+A   LD  MKN+L N+LT   S++ K LL  GL+KPFPKNC
Sbjct: 947  DPVKLQVEVEKIILSNGEAAITRLDRMMKNEL-NELT---SKVNKDLLLKGLVKPFPKNC 1002

Query: 680  ISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITD 859
            +S+MTTTGAKGSTVNF QIS++LGQQ+LEGKRVPRMVSGKTLPCFPPWD  +RAGGFI+D
Sbjct: 1003 LSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISD 1062

Query: 860  RFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGS 1039
            RFLTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LKVCYDYTVRD+DGS
Sbjct: 1063 RFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGS 1122

Query: 1040 IIQFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQRQFNSYIEKLPEGLEEEARRF 1219
            I+QF YG+DGVDVHQTSF+  F+AL  N E +C+KF    +FN YI+KLP+ L ++ ++F
Sbjct: 1123 IVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQDGKFNGYIQKLPKELRKKTKKF 1182

Query: 1220 IQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQ 1399
            I+   ++ ++                              K+Q  F+ LVKQKY+SSLAQ
Sbjct: 1183 IEGFMEERQDFD--------------------------NMKKQKDFVNLVKQKYISSLAQ 1216

Query: 1400 SGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTC 1579
             GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGE+NVTLGIPRLQEILMTA++ IKTPI+TC
Sbjct: 1217 PGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTC 1276

Query: 1580 PFSQWRSKHEVVSLVSRVKKVTVADLVESMDVQL---SIHPRQVARTYKLIIKVKDTEFV 1750
            P    RSK +   L +++KKVTVAD+ ESM+V +   ++   Q    YKL +K+ +    
Sbjct: 1277 PLQMGRSKDDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYKLKMKLYEPALY 1336

Query: 1751 P------LADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDS 1912
            P      L D  +TL++VF+RELEDAI+NH++ LS++SGIKNF+  S S  S E DED S
Sbjct: 1337 PPHTGISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDEDAS 1396

Query: 1913 G 1915
            G
Sbjct: 1397 G 1397


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score =  715 bits (1845), Expect = 0.0
 Identities = 391/660 (59%), Positives = 475/660 (71%), Gaps = 23/660 (3%)
 Frame = +2

Query: 5    VESLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDSYKNG---E 175
            +++L P IWKP+PLWTGKQVITA+LNHIT    P TVE   KIP N+F   + ++    E
Sbjct: 697  IQTLPPAIWKPKPLWTGKQVITAILNHITSDHPPFTVEKDAKIPSNFFKSRANEDKPCQE 756

Query: 176  EDEDQNA-------EHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSAL 334
            E  D++A       E  +LV+KNELVRGVIDK QFG++GLVHTV EL GS++AGILLS L
Sbjct: 757  EKSDKDAPAEKEPDEEKMLVYKNELVRGVIDKGQFGEYGLVHTVHELLGSHTAGILLSVL 816

Query: 335  SRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKFKPGQI--GP 505
            SRLFT +LQ+HGFTCGVDDL+IL + D +RK +LE  E  GE VH  F+  K  +I   P
Sbjct: 817  SRLFTAYLQMHGFTCGVDDLLILTNKDEERKKQLEWCEKSGEAVHRNFIGIKDEKIKIDP 876

Query: 506  EELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCIS 685
              +QL I+K I SD +SA A LD +M N+L    T+  S ++ +LL+ GLLKP  KNCIS
Sbjct: 877  VAMQLNIEKTIRSDGDSALAYLDRQMSNELN---TKTSSGVISNLLSDGLLKPSGKNCIS 933

Query: 686  VMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRF 865
            +MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLPCF PWD+ +R+GG+ITDRF
Sbjct: 934  LMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARSGGYITDRF 993

Query: 866  LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSII 1045
            LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD+TVRDADGS++
Sbjct: 994  LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIGYDHTVRDADGSVV 1053

Query: 1046 QFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQ-RQFNSYIEKLPEGLEEEARRFI 1222
            QFYYGEDGVDVHQTSF+  FK L  N++ I ++   Q   FNSYI +LPE L+E+A RF+
Sbjct: 1054 QFYYGEDGVDVHQTSFIAKFKELALNQDMIYKRSGGQLGAFNSYISELPEALKEKADRFL 1113

Query: 1223 QEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQS 1402
             +                      GR   +L  +E            L+KQK+L SLAQ 
Sbjct: 1114 DDF------------------SIMGRIASNLVKRE--------DLYNLMKQKFLLSLAQP 1147

Query: 1403 GEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCP 1582
            GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS  IKTPI+TCP
Sbjct: 1148 GEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIKTPIMTCP 1207

Query: 1583 FSQWRSKHEVVSLVSRVKKVTVADLVESMDVQL---SIHPRQVARTYKLIIKVKDTEFVP 1753
              + R+  +   L  +++KVTVAD+VESM+V +   +I    V R YKL +K+      P
Sbjct: 1208 LQEGRTNEDADHLADKLRKVTVADIVESMEVSVVPFAIQDGGVCRIYKLKMKLYRPAHYP 1267

Query: 1754 ------LADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDSG 1915
                  + D  +TL+ VFLRELEDAI+NH+  LSR+SGIK+F+  S S  S EADED +G
Sbjct: 1268 QYANISVEDWEETLEVVFLRELEDAIQNHMFLLSRISGIKDFLPESRSRASGEADEDVAG 1327


>gb|EMJ04262.1| hypothetical protein PRUPE_ppa000153mg [Prunus persica]
          Length = 1612

 Score =  701 bits (1810), Expect = 0.0
 Identities = 377/677 (55%), Positives = 470/677 (69%), Gaps = 36/677 (5%)
 Frame = +2

Query: 5    VESLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDSY------- 163
            ++ LLP IWKPEPLWTGKQVITALLNHITRG  P TVE   KIP+ +F   +        
Sbjct: 607  MQPLLPAIWKPEPLWTGKQVITALLNHITRGSPPVTVERDAKIPRGFFNCKNVEGEDKSG 666

Query: 164  -----------------KNGEEDEDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQE 292
                             K+  +++++  E++LL+++N LVRGVIDKAQFG +GLVHTVQE
Sbjct: 667  NDGQQKKRKPSKEQATDKDSSKEKEEPDENHLLIYRNNLVRGVIDKAQFGDYGLVHTVQE 726

Query: 293  LYGSNSAGILLSALSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHC 469
             YGS++AG LLS LS LFT++LQ+HGFTCG+DDL++L   DA+ KD+LE  EDVGE V+ 
Sbjct: 727  FYGSDTAGKLLSVLSHLFTVYLQMHGFTCGIDDLLLLESKDAKMKDQLESCEDVGENVYR 786

Query: 470  EFVKFKP-GQIGPEELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLT 646
            +F++ K   +  P ELQL I+  I S+ ESA ASLD +M ++L NK +   S + K LL 
Sbjct: 787  DFIEVKDVKRKDPVELQLNIENFIRSNGESALASLDRRMISQLNNKTSN--SDVFKQLLL 844

Query: 647  AGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWD 826
             GL KP  KNCI +MTT+GAKGS  N QQI++YLGQQELEGKRVP+M+SGKTLPCFPPWD
Sbjct: 845  RGLSKPSVKNCIYLMTTSGAKGSVANLQQITSYLGQQELEGKRVPQMISGKTLPCFPPWD 904

Query: 827  FTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVC 1006
            ++SRAGGFI DRFLTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRC+IKNLE LKV 
Sbjct: 905  WSSRAGGFIIDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCIIKNLECLKVS 964

Query: 1007 YDYTVRDADGSIIQFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQR-QFNSYIEK 1183
            YD TVRDADGSIIQF YGEDG+DVH TSF++ F++L  N+E   +K + Q  + N YI+ 
Sbjct: 965  YDNTVRDADGSIIQFRYGEDGIDVHMTSFIQKFESLIANKEMFHKKGRRQMDKLNPYIKD 1024

Query: 1184 LPEGLEEEARRFIQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIE 1363
            LP  L+E+A +F+  +  K K+                                Q  F++
Sbjct: 1025 LPLALKEKAEKFVHNLALKEKDHNF-----------------------------QEDFLK 1055

Query: 1364 LVKQKYLSSLAQSGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT 1543
            L++ KYL SLAQ GEPVGV+A QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT
Sbjct: 1056 LMEHKYLCSLAQPGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT 1115

Query: 1544 ASDVIKTPILTCPFSQWRSKHEVVSLVSRVKKVTVADLVESMD---VQLSIHPRQVARTY 1714
            A++ IKTP++TCP  + RSK E   L  ++KK+TVAD++ESM    V   I   Q  R Y
Sbjct: 1116 AANDIKTPVMTCPLQKGRSKEEAQELADKLKKITVADIIESMKVTFVPFFIQDGQTCRIY 1175

Query: 1715 KLIIKVKDTEFV------PLADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSI 1876
            KL + +   E +         D  + L+ VF+RELEDAI+NH++ LS++SGIKNF   S 
Sbjct: 1176 KLEMTLHVPEHLRTIIEYSSEDWEEILEIVFVRELEDAIQNHILLLSKISGIKNFTPDSQ 1235

Query: 1877 SEVSNEADEDDSGVRTQ 1927
             + SNE DE+    R+Q
Sbjct: 1236 PKASNETDENLPEKRSQ 1252


>emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]
          Length = 1350

 Score =  692 bits (1785), Expect = 0.0
 Identities = 352/548 (64%), Positives = 423/548 (77%), Gaps = 15/548 (2%)
 Frame = +2

Query: 5    VESLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTG--DSYKNGEE 178
            ++ LLP IWKPEPLW+GKQVITA+LNHITRGR P T E  GKIP+ YF    D  K+G+ 
Sbjct: 833  MQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKG 892

Query: 179  D------------EDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGIL 322
                         E ++ E+ LL+ KNELVRGVIDKAQF K+GLVH VQELYGSN+AGIL
Sbjct: 893  KDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGIL 952

Query: 323  LSALSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLE-GEDVGEEVHCEFVKFKPGQI 499
            LS LSRLFT+FLQ+HGFTCGVDDL+I P+YD  RK +L+  E++GE VHC+F+    G+I
Sbjct: 953  LSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHGKI 1012

Query: 500  GPEELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNC 679
             P +LQ+E++K+I S+ E+A   LD  MKN+L N+LT   S++ K LL  GL+KPFPKNC
Sbjct: 1013 DPVKLQVEVEKIILSNGEAAITRLDRMMKNEL-NELT---SKVNKDLLLKGLVKPFPKNC 1068

Query: 680  ISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITD 859
            +S+MTTTGAKGSTVNF QIS++LGQQ+LEGKRVPRMVSGKTLPCFPPWD  +RAGGFI+D
Sbjct: 1069 LSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISD 1128

Query: 860  RFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGS 1039
            RFLTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LKVCYDYTVRD+DGS
Sbjct: 1129 RFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGS 1188

Query: 1040 IIQFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQRQFNSYIEKLPEGLEEEARRF 1219
            I+QF YG+DGVDVHQTSF+  F+AL  N+E +C+KF    +FN YI+KLP+ L ++ ++F
Sbjct: 1189 IVQFNYGDDGVDVHQTSFITEFEALAVNQEVVCEKFGQDGKFNGYIQKLPKELRKKTKKF 1248

Query: 1220 IQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQ 1399
            I+   ++ ++                              K+Q  F+ LVKQKY+SSLAQ
Sbjct: 1249 IEGFMEERQDFD--------------------------NMKKQKDFVNLVKQKYISSLAQ 1282

Query: 1400 SGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTC 1579
             GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGE+NVTLGIPRLQEILMTA++ IKTPI+TC
Sbjct: 1283 PGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTC 1342

Query: 1580 PFSQWRSK 1603
            P    RSK
Sbjct: 1343 PLQMGRSK 1350


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Cucumis sativus]
          Length = 1652

 Score =  689 bits (1779), Expect = 0.0
 Identities = 370/653 (56%), Positives = 466/653 (71%), Gaps = 20/653 (3%)
 Frame = +2

Query: 14   LLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFT---GDSYKNGEEDE 184
            +LP +WKPEPLWTGKQV+TALL+HIT+G  P  VE   KIP+ +     G+S K      
Sbjct: 685  VLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRGFLILDEGNSKKKEHTKV 744

Query: 185  DQNA-----EHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSRLFT 349
            D+       + +LL++KNELVRGVIDKAQFG +GLVHTVQELYGSN+AG+LLS +SRLFT
Sbjct: 745  DKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFT 804

Query: 350  IFLQIHGFTCGVDDLIILPHYDAQRKDKLE-GEDVGEEVHCEFVKFKPGQ-IGPEELQLE 523
            +FLQ HGFTCGVDDL+++   D +R+ +L+  E +GE+VH  F+K K G+ + P  LQL 
Sbjct: 805  VFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLN 864

Query: 524  IQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMTTTG 703
            I+K I  + E+A  SLD KM ++L  +     S++LK LL+ GLLKP  KNCIS+MTT+G
Sbjct: 865  IEKTISYNGEAALTSLDRKMTSQLNERTGN--SKVLKDLLSEGLLKPSVKNCISLMTTSG 922

Query: 704  AKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTGLRP 883
            AKG T NFQQIS++LGQQ+LEGKRVPRMVSGKTLPCFPPWD+ SRAGGFI DRFLTGLRP
Sbjct: 923  AKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRP 982

Query: 884  QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGE 1063
            QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLK+CYD+TVRDADGS+IQF YGE
Sbjct: 983  QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGE 1042

Query: 1064 DGVDVHQTSFLKNFKALEDNRETICQKFQNQ-RQFNSYIEKLPEGLEEEARRFIQEVQDK 1240
            DGVDVH+T+F+  F+AL  N++ + +   +Q  ++N +I +LP  L E+       +   
Sbjct: 1043 DGVDVHKTAFITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIYNSL--- 1099

Query: 1241 SKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEPVGV 1420
            SK+K  G  +++                          FI L++ KYLSSLAQ GEPVGV
Sbjct: 1100 SKDKVPGLVLKE-------------------------DFIRLLENKYLSSLAQPGEPVGV 1134

Query: 1421 IAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQWRS 1600
            +AAQS+GEPSTQMTLNTFH AGRGEMNVTLGIPRLQEILMTAS  IKTPI+TCP  +  S
Sbjct: 1135 LAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQDIKTPIMTCPLKEGYS 1194

Query: 1601 KHEVVSLVSRVKKVTVADLVESMDVQL---SIHPRQVARTYKLIIKVKDTE------FVP 1753
                  L +++KK+TVAD++ESM+V +   S   R++   YKL I     E       + 
Sbjct: 1195 MDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHIS 1254

Query: 1754 LADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDS 1912
              D+ +TL++VFL ELE  IE  ++ LS+++GIK F+  S S+ S+E DE  S
Sbjct: 1255 PEDLENTLETVFLEELEGLIEREMVLLSKINGIKXFVPDSQSKGSSEGDEVSS 1307


>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
            sativus]
          Length = 1650

 Score =  688 bits (1775), Expect = 0.0
 Identities = 367/656 (55%), Positives = 464/656 (70%), Gaps = 23/656 (3%)
 Frame = +2

Query: 14   LLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDSYKNGEEDEDQN 193
            +LP +WKPEPLWTGKQV+TALL+HIT+G  P  VE   KIP+ +F      N    + ++
Sbjct: 679  VLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRGFFKCRDMGNNSSKKKEH 738

Query: 194  A-----------EHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSR 340
                        + +LL++KNELVRGVIDKAQFG +GLVHTVQELYGSN+AG+LLS +SR
Sbjct: 739  TKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSR 798

Query: 341  LFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLE-GEDVGEEVHCEFVKFKPGQ-IGPEEL 514
            LFT+FLQ HGFTCGVDDL+++   D +R+ +L+  E +GE+VH  F+K K G+ + P  L
Sbjct: 799  LFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTL 858

Query: 515  QLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMT 694
            QL I+K I  + E+A  SLD KM ++L  +     S++LK LL+ GLLKP  KNCIS+MT
Sbjct: 859  QLNIEKTISYNGEAALTSLDRKMTSQLNERTGN--SKVLKDLLSEGLLKPSVKNCISLMT 916

Query: 695  TTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTG 874
            T+GAKG T NFQQIS++LGQQ+LEGKRVPRMVSGKTLPCFPPWD+ SRAGGFI DRFLTG
Sbjct: 917  TSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTG 976

Query: 875  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFY 1054
            LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLK+CYD+TVRDADGS+IQF 
Sbjct: 977  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQ 1036

Query: 1055 YGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQ-RQFNSYIEKLPEGLEEEARRFIQEV 1231
            YGEDGVDVH+T+F+  F+AL  N++ + +   +Q  ++N +I +LP  L E+       +
Sbjct: 1037 YGEDGVDVHKTAFITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIYNSL 1096

Query: 1232 QDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEP 1411
               SK+K  G  +++                          FI L++ KYLSSLAQ GEP
Sbjct: 1097 ---SKDKVPGLVLKE-------------------------DFIRLLENKYLSSLAQPGEP 1128

Query: 1412 VGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQ 1591
            VGV+AAQS+GEPSTQMTLNTFH  GRGEMNVTLGI RLQEILMTAS  IKTPI+TCP  +
Sbjct: 1129 VGVLAAQSIGEPSTQMTLNTFHHVGRGEMNVTLGILRLQEILMTASQDIKTPIMTCPLKE 1188

Query: 1592 WRSKHEVVSLVSRVKKVTVADLVESMDVQL---SIHPRQVARTYKLIIKVKDTE------ 1744
              S      L +++KK+TVAD++ESM+V +   S   R++   YKL I     E      
Sbjct: 1189 GYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHG 1248

Query: 1745 FVPLADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDS 1912
             +   D+ +TL++VFL ELE  IE  ++ LS+++GIKNF+  S S+ S+E DE  S
Sbjct: 1249 HISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVPDSQSKGSSEGDEVSS 1304


>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
            max]
          Length = 1651

 Score =  685 bits (1768), Expect = 0.0
 Identities = 373/649 (57%), Positives = 457/649 (70%), Gaps = 18/649 (2%)
 Frame = +2

Query: 20   PTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDSYKNGEEDEDQNA- 196
            P IWKPEPLWTGKQVI+ALL +ITRG  P T E   KIP N+F     K     ED +  
Sbjct: 691  PAIWKPEPLWTGKQVISALLYYITRGSPPFTAEKNAKIPSNFFKTQIRKGKRYTEDTSKK 750

Query: 197  -----EHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSRLFTIFLQ 361
                 E  LL++KN+LVRGV+DKAQFG +G++HTVQELYGSN AG LLSALSRLFT FLQ
Sbjct: 751  KDKPDEDKLLIYKNDLVRGVVDKAQFGDYGMIHTVQELYGSNVAGNLLSALSRLFTTFLQ 810

Query: 362  IHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKFKPGQ-IGPEELQLEIQKV 535
            +HGFTCGVDDL++    D +R ++L+  E +G+ VH EF+  K    I P  LQL I+K 
Sbjct: 811  MHGFTCGVDDLMLTEGKDVERMNQLKSCEIIGDSVHREFIGVKNSDNIDPVTLQLNIEKK 870

Query: 536  ICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMTTTGAKGS 715
            I S+ E+A  +LD KM + L +   R  S ILK LL+ G+LKP  KNCIS+MTT+GAKGS
Sbjct: 871  IRSNGEAAL-TLDRKMTSNLNS---RTSSGILKKLLSEGILKPSGKNCISLMTTSGAKGS 926

Query: 716  TVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTGLRPQEYY 895
             VNFQQIS++LGQQELEGKRVPRMVSGKTLPCFPPWD + RAGGFI DRFLT L PQEYY
Sbjct: 927  MVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPPWDCSPRAGGFIIDRFLTALHPQEYY 986

Query: 896  FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVD 1075
            FHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD+TVRDADGSIIQF+YGEDGVD
Sbjct: 987  FHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVD 1046

Query: 1076 VHQTSFLKNFKALEDNRETICQKFQNQRQFNS-YIEKLPEGLEEEARRFIQEVQDKSKEK 1252
            VHQTSF+  F AL  N+E +   +  Q   +S YI KLPE LE +A +F       SK++
Sbjct: 1047 VHQTSFITEFGALSTNKELVFSNYCRQLDRSSPYINKLPEALEGKAEKF-------SKQR 1099

Query: 1253 QIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEPVGVIAAQ 1432
             +GS                          EQ  F+ L++ KY+S LAQ GEPVGV+A+Q
Sbjct: 1100 NLGS-------------------------MEQADFLRLMEHKYVSCLAQPGEPVGVLASQ 1134

Query: 1433 SVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQWRSKHEV 1612
            SVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEILM A+  IKTP +TCP    +S  + 
Sbjct: 1135 SVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILMAAARDIKTPFMTCPLRHDKSMKDA 1194

Query: 1613 VSLVSRVKKVTVADLVESMDVQ---LSIHPRQVARTYKLIIKVKDTEFVP------LADI 1765
            + L  ++KK+TVAD+++SM V    +++   QV   YKL++K+  ++  P      L D 
Sbjct: 1195 ICLADKLKKITVADIIKSMKVSVVPVTVLGGQVCSIYKLVMKLYKSKQYPEYTDITLDDW 1254

Query: 1766 HDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDS 1912
             +TL+  F+RELEDAI+NH+  LS++SGIK F +   S  SN +++  S
Sbjct: 1255 EETLRVNFVRELEDAIQNHMTLLSKISGIKKFKTDPQSNYSNSSEDAHS 1303


>gb|ESW17626.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
          Length = 1637

 Score =  681 bits (1758), Expect = 0.0
 Identities = 372/658 (56%), Positives = 458/658 (69%), Gaps = 22/658 (3%)
 Frame = +2

Query: 20   PTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYF----------TGDSYKN 169
            P IWKPEPLWTGKQVI+ALL +ITR   P TVE   KIP N+F          T D  +N
Sbjct: 679  PAIWKPEPLWTGKQVISALLYYITRDSPPFTVEKNAKIPSNFFKTQVRDGKRHTRDKSRN 738

Query: 170  GEEDEDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSRLFT 349
              E +D   E  LL++KN+LVRGV+DKAQFG +G++HTVQELYGS  AG LLSALSRLFT
Sbjct: 739  KVEPDD---EDKLLIYKNDLVRGVVDKAQFGDYGIIHTVQELYGSKVAGNLLSALSRLFT 795

Query: 350  IFLQIHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKFKPGQI-GPEELQLE 523
             FLQ+HGFTCGVDDL+I    D +R D+L   E++G+ VH EF+      I  P  LQL 
Sbjct: 796  TFLQMHGFTCGVDDLMITEEKDVERMDQLRSCEEIGDIVHREFIGVMNSDIIDPITLQLN 855

Query: 524  IQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMTTTG 703
            I+K I S+ E+A   LD KM + L +   R  S ILK LL+ G+LKP  KNCIS+MTT+G
Sbjct: 856  IEKKIRSNGEAALTYLDRKMTSNLNS---RTSSGILKDLLSDGILKPSGKNCISLMTTSG 912

Query: 704  AKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTGLRP 883
            AKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLPCF PWD + RAGGFI DRFLTGL P
Sbjct: 913  AKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFAPWDCSPRAGGFIIDRFLTGLHP 972

Query: 884  QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGE 1063
            QEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD+TVRDADGSIIQF+YGE
Sbjct: 973  QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGE 1032

Query: 1064 DGVDVHQTSFLKNFKALEDNRETICQKFQNQRQFNS-YIEKLPEGLEEEARRFIQEVQDK 1240
            DGVDVH TSF+  F+AL  N+E +      Q   +S YI KLP+ L+E+A  F    +D 
Sbjct: 1033 DGVDVHHTSFINKFEALSTNKELVYGNCCRQLDRSSPYINKLPDALKEKAENFF---RDS 1089

Query: 1241 SKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEPVGV 1420
             K++ +GS                          ++ +F++L++ KY+S LAQ GE VGV
Sbjct: 1090 LKQRNLGSL-------------------------KRAEFLKLMEHKYVSCLAQPGESVGV 1124

Query: 1421 IAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQWRS 1600
            +A+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEI+M A+  IKTP +TCP    +S
Sbjct: 1125 LASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEIVMAAARDIKTPFMTCPLRSNKS 1184

Query: 1601 KHEVVSLVSRVKKVTVADLVESMDVQ---LSIHPRQVARTYKLIIKVKDTEFVP------ 1753
              E + L  ++KK+TVAD+++SM V    +S+   QV   YKL++K+   +  P      
Sbjct: 1185 MEEAICLADKLKKITVADIIKSMKVSVVPVSVLGGQVCSIYKLVMKLYKPKQYPKYSDIT 1244

Query: 1754 LADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDSGVRTQ 1927
            L D  DTL+  F+RELEDAIENH+  LS++SGIK F +   S  ++  D   +G  ++
Sbjct: 1245 LEDWEDTLRISFVRELEDAIENHMALLSKISGIKKFKTDPQSHSNSSEDAHGNGSESE 1302


>gb|EOY09357.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
          Length = 1400

 Score =  679 bits (1751), Expect = 0.0
 Identities = 368/671 (54%), Positives = 469/671 (69%), Gaps = 32/671 (4%)
 Frame = +2

Query: 14   LLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDSYKNGEEDEDQN 193
            ++P I KP+PLWTGKQVI+++L+HITRGR P TV    KIP+++F     KN +   ++N
Sbjct: 415  IIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREEN 474

Query: 194  A--------------------EHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSA 313
                                 E  +L+++N+LVRGVIDKAQF  +GLVHTVQELYGSN+A
Sbjct: 475  QPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTA 534

Query: 314  GILLSALSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKFKP 490
            GILLS  SRLFT+FLQ+HGFTCGVDDL+I+   D +RK +LE  E    E H E    K 
Sbjct: 535  GILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVKV 594

Query: 491  G-QIGPEELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPF 667
              +  P ELQLEI++ I  D E+A  +LD KM + L N+ + +G  +L  LL+ GL+K  
Sbjct: 595  NSETAPTELQLEIERTIRRDGETALTALDRKMISVL-NENSSKG--VLTELLSEGLVKSM 651

Query: 668  PKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGG 847
             +NCIS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLPCF PWD+ +RAGG
Sbjct: 652  GENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGG 711

Query: 848  FITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRD 1027
            FI+DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD+TVRD
Sbjct: 712  FISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRD 771

Query: 1028 ADGSIIQFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQRQFNSYIEK-LPEGLEE 1204
            ADGSI+QF YGEDG+DVHQTSF+  F+AL  N++ + +K  +Q       +K LP+GL  
Sbjct: 772  ADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRS 831

Query: 1205 EARRFIQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYL 1384
            +A +FI+E   K + ++I                            +   F+ L+K K+L
Sbjct: 832  KAEQFIREEIKKYQHQKI----------------------------KPKDFLNLLKLKFL 863

Query: 1385 SSLAQSGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKT 1564
            SSLAQ GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS  I+T
Sbjct: 864  SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRT 923

Query: 1565 PILTCPFSQWRSKHEVVSLVSRVKKVTVADLVESMDVQL---SIHPRQVARTYKLII--- 1726
            P++TCP  + ++K + + L +++KK+TVAD++ESM+V +   ++    +   YKL +   
Sbjct: 924  PVMTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIYKLKMMLG 983

Query: 1727 ---KVKDTEFVPLADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEA 1897
               K  +   + + D    LK VFLRELEDAI+NH++ LS++SGIK FM  S    SNE 
Sbjct: 984  KPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQRNASNEM 1043

Query: 1898 DEDDSGVRTQE 1930
            DED S  R++E
Sbjct: 1044 DEDVSEGRSRE 1054


>gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score =  679 bits (1751), Expect = 0.0
 Identities = 368/671 (54%), Positives = 469/671 (69%), Gaps = 32/671 (4%)
 Frame = +2

Query: 14   LLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDSYKNGEEDEDQN 193
            ++P I KP+PLWTGKQVI+++L+HITRGR P TV    KIP+++F     KN +   ++N
Sbjct: 707  IIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREEN 766

Query: 194  A--------------------EHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSA 313
                                 E  +L+++N+LVRGVIDKAQF  +GLVHTVQELYGSN+A
Sbjct: 767  QPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTA 826

Query: 314  GILLSALSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKFKP 490
            GILLS  SRLFT+FLQ+HGFTCGVDDL+I+   D +RK +LE  E    E H E    K 
Sbjct: 827  GILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVKV 886

Query: 491  G-QIGPEELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPF 667
              +  P ELQLEI++ I  D E+A  +LD KM + L N+ + +G  +L  LL+ GL+K  
Sbjct: 887  NSETAPTELQLEIERTIRRDGETALTALDRKMISVL-NENSSKG--VLTELLSEGLVKSM 943

Query: 668  PKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGG 847
             +NCIS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLPCF PWD+ +RAGG
Sbjct: 944  GENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGG 1003

Query: 848  FITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRD 1027
            FI+DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD+TVRD
Sbjct: 1004 FISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRD 1063

Query: 1028 ADGSIIQFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQRQFNSYIEK-LPEGLEE 1204
            ADGSI+QF YGEDG+DVHQTSF+  F+AL  N++ + +K  +Q       +K LP+GL  
Sbjct: 1064 ADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRS 1123

Query: 1205 EARRFIQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYL 1384
            +A +FI+E   K + ++I                            +   F+ L+K K+L
Sbjct: 1124 KAEQFIREEIKKYQHQKI----------------------------KPKDFLNLLKLKFL 1155

Query: 1385 SSLAQSGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKT 1564
            SSLAQ GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS  I+T
Sbjct: 1156 SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRT 1215

Query: 1565 PILTCPFSQWRSKHEVVSLVSRVKKVTVADLVESMDVQL---SIHPRQVARTYKLII--- 1726
            P++TCP  + ++K + + L +++KK+TVAD++ESM+V +   ++    +   YKL +   
Sbjct: 1216 PVMTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIYKLKMMLG 1275

Query: 1727 ---KVKDTEFVPLADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEA 1897
               K  +   + + D    LK VFLRELEDAI+NH++ LS++SGIK FM  S    SNE 
Sbjct: 1276 KPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQRNASNEM 1335

Query: 1898 DEDDSGVRTQE 1930
            DED S  R++E
Sbjct: 1336 DEDVSEGRSRE 1346


>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
            sinensis]
          Length = 1715

 Score =  677 bits (1746), Expect = 0.0
 Identities = 376/689 (54%), Positives = 469/689 (68%), Gaps = 55/689 (7%)
 Frame = +2

Query: 14   LLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFT--------GDSYKN 169
            LLP IWKPEPLWTGKQVITA+LNHITRGR P  VE  GK+P+++F          D  KN
Sbjct: 708  LLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKN 767

Query: 170  ------------------------GEEDEDQNAEHN-----------LLVWKNELVRGVI 244
                                    G+  E++ AE N           LL++KN+LVRGVI
Sbjct: 768  DKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVI 827

Query: 245  DKAQFGKFGLVHTVQELYGSNSAGILLSALSRLFTIFLQIHGFTCGVDDLIILPHYDAQR 424
            DKAQF  +GLVHTVQELYGSN+AG LLSALSRLFT+FLQ+HGFTCGVDDL+IL   + +R
Sbjct: 828  DKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 887

Query: 425  KDKLEG-EDVGEEVHCEFVKFKPG-QIGPEELQLEIQKVICSDRESATASLDMKMKNKLT 598
            K+ L G E++G+ VH E ++ + G +I P +L+ EI+K +    ++A A  DMKM ++L 
Sbjct: 888  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQL- 946

Query: 599  NKLTREGSQILKHLLTAGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRV 778
            NK T   S ++  LL+ GLLKP  KN IS+MTT+GAKGS VNFQQIS++LGQQELEGKRV
Sbjct: 947  NKHT--SSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRV 1004

Query: 779  PRMVSGKTLPCFPPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSG 958
            PRMVSGKTLP F PWD+  RAGGFI DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSG
Sbjct: 1005 PRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSG 1064

Query: 959  YLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHQTSFLKNFKALEDNRETIC 1138
            YLQRCLIKNLE LK+ YDY+VRDADGSI+QF YGEDGVDVHQTSF+  F AL  N+E I 
Sbjct: 1065 YLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAANQEMIY 1124

Query: 1139 QKFQNQRQF-NSYIEKLPEGLEEEARRFIQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHL 1315
            +K   Q    N+YI +LP+ L++ A +F                            +K L
Sbjct: 1125 KKCSGQLDASNAYIMELPDALKDNAEKFA---------------------------DKFL 1157

Query: 1316 SNKEKATEKEQNKFIELVKQKYLSSLAQSGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGE 1495
            SN     E  +  F++LVK K++ SLAQ GEPVG++A+QSVGEPSTQMTLNTFHLAGRGE
Sbjct: 1158 SN-----EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGE 1212

Query: 1496 MNVTLGIPRLQEILMTASDVIKTPILTCPFSQWRSKHEVVSLVSRVKKVTVADLVESMDV 1675
            MNVTLGIPRLQEIL  AS  IKTP++TCP    +++ +   L  ++KK+TVAD+V+ + V
Sbjct: 1213 MNVTLGIPRLQEILTIASKDIKTPVITCPLLVGKTEDDAKRLADKLKKITVADIVKKISV 1272

Query: 1676 QL---SIHPRQVARTYKLIIKVKDTEFVP------LADIHDTLKSVFLRELEDAIENHVI 1828
            ++   + H  Q    Y L +++   +  P      L D  + L+ VF+RELED I+NH++
Sbjct: 1273 KVRAFTSHDGQACSVYVLTMELYKPKNYPTYTDITLEDWEEILEVVFVRELEDTIQNHLL 1332

Query: 1829 FLSRVSGIKNFMSSSISEVSNEADEDDSG 1915
             LS+++GIKN  S    + SNE D+D SG
Sbjct: 1333 LLSKINGIKNVASGLTQKASNETDQDGSG 1361


>ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1628

 Score =  676 bits (1743), Expect = 0.0
 Identities = 365/648 (56%), Positives = 463/648 (71%), Gaps = 17/648 (2%)
 Frame = +2

Query: 20   PTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYF---TGDSYKNGEED--E 184
            P I+KPEPLWTGKQVI+ALL +IT+GR P TVE   KIP ++F   TG+  K+ ++   +
Sbjct: 674  PAIFKPEPLWTGKQVISALLCYITKGRPPFTVEKNAKIPSSFFKTQTGEIKKHTKDTSRK 733

Query: 185  DQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSRLFTIFLQI 364
                E  LL+++N+LVRGV+DKAQFG +G+VHTVQE YGSN+AGILLSALSRLFT FLQ+
Sbjct: 734  KDELEDKLLIYRNDLVRGVVDKAQFGDYGMVHTVQEFYGSNTAGILLSALSRLFTNFLQM 793

Query: 365  HGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKFKPGQ-IGPEELQLEIQKVI 538
            HGFTCGVDDL+I    D++R ++LE  E++G+ VH EF+     + I P  +QL ++K I
Sbjct: 794  HGFTCGVDDLLIKVGKDSERLNQLESCEEIGDIVHREFIGVMESENIDPITMQLNVEKKI 853

Query: 539  CSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMTTTGAKGST 718
             S+ E+A   LD KM   ++N  +R  S +LK LL+ G LKP  KN IS+MTT+GAKGS 
Sbjct: 854  RSNGEAAITYLDRKM---ISNLNSRTSSGVLKELLSKGSLKPSGKNWISLMTTSGAKGSM 910

Query: 719  VNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTGLRPQEYYF 898
            VNFQQIS++LGQQELEGKRVPRMVSGKTLPCFP WD + RAGGFI DRFLT LRPQEYYF
Sbjct: 911  VNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPSWDCSPRAGGFIIDRFLTALRPQEYYF 970

Query: 899  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDV 1078
            HCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKVCYD+TVRD+DGSIIQF+YGEDGVDV
Sbjct: 971  HCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVCYDHTVRDSDGSIIQFHYGEDGVDV 1030

Query: 1079 HQTSFLKNFKALEDNRETICQKFQNQRQFNS-YIEKLPEGLEEEARRFIQEVQDKSKEKQ 1255
            HQTSF+  F+AL  N+E I      Q   +S YI KLP+ L+ +A  FI++   K +   
Sbjct: 1031 HQTSFINKFEALSINKELIYSNCCRQLDRSSPYINKLPDALKGKAENFIRDFSSKQR--- 1087

Query: 1256 IGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEPVGVIAAQS 1435
                                     ++  ++  F+++++ KY+SSLAQ GEPVGV+A+QS
Sbjct: 1088 ------------------------NSSSMKEADFLQVMEHKYVSSLAQPGEPVGVLASQS 1123

Query: 1436 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQWRSKHEVV 1615
            VGEP+TQMTLNTFHLAGRGEMNVTLGIPRL EI++ AS  IKTP +TCP    +S  + +
Sbjct: 1124 VGEPATQMTLNTFHLAGRGEMNVTLGIPRLHEIVVAASKNIKTPFMTCPLRPNKSMEDAI 1183

Query: 1616 SLVSRVKKVTVADLVESMDVQ---LSIHPRQVARTYKLIIKVKDTEFVP------LADIH 1768
             L  ++KK+TVAD++ESM V    +++   ++   YKL +K+   +  P      L D  
Sbjct: 1184 RLADKMKKITVADIIESMKVSVVPVAVKEGRICSIYKLTMKLHKPKHYPKYTDVTLEDWE 1243

Query: 1769 DTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDS 1912
            +TL+  F+RELEDAIENH+  L+R+SGIK+F   S S  SN  D D S
Sbjct: 1244 ETLRVGFVRELEDAIENHISLLARISGIKDFQGKSNS--SNGLDNDHS 1289


>ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1660

 Score =  675 bits (1742), Expect = 0.0
 Identities = 367/660 (55%), Positives = 465/660 (70%), Gaps = 23/660 (3%)
 Frame = +2

Query: 20   PTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYF----------TGD-SYK 166
            P I+KPEPLWTGKQVI+ALL +IT+G  P TVE   KIP ++F          T D S K
Sbjct: 686  PAIFKPEPLWTGKQVISALLYYITKGSPPFTVEKNAKIPSSFFKTRMREGKKRTKDTSIK 745

Query: 167  NGEEDEDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSRLF 346
              E DED+     LL++KN+LVRGV+DKAQFG +G+VHTVQE YGSN+AG LLSALSRLF
Sbjct: 746  KDEPDEDK-----LLIYKNDLVRGVVDKAQFGDYGIVHTVQEFYGSNTAGFLLSALSRLF 800

Query: 347  TIFLQIHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKFKPGQ-IGPEELQL 520
            T FLQ+HGFTCGVDDL++    D++R ++LE  E++G+ VH EF+    G  I P  +QL
Sbjct: 801  TNFLQMHGFTCGVDDLLLTEGKDSERTNQLESCEEIGDIVHREFIGVMEGDNIDPITMQL 860

Query: 521  EIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMTTT 700
             ++K I S+ E+A   LD KM   ++N  +R  S +LK LL+ G+LKP  KN IS+MTT+
Sbjct: 861  NVEKKIRSNGEAAITYLDRKM---ISNLNSRTSSGVLKELLSEGILKPSGKNWISLMTTS 917

Query: 701  GAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTGLR 880
            GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLPCF  WD + RAGGFI DRFLT LR
Sbjct: 918  GAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFTSWDCSPRAGGFIIDRFLTALR 977

Query: 881  PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYG 1060
            PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD+TVRDADGSIIQF+YG
Sbjct: 978  PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYG 1037

Query: 1061 EDGVDVHQTSFLKNFKALEDNRETICQKFQNQRQFNS-YIEKLPEGLEEEARRFIQEVQD 1237
            EDGVDVHQTSF+  F+AL  N+E +      +   +S YI KLP+ L+ +A +FI++   
Sbjct: 1038 EDGVDVHQTSFINKFEALSTNKELVYSNCCRELDESSPYINKLPDALKGKAEKFIRD--S 1095

Query: 1238 KSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEPVG 1417
             SK++  GS                              F++L++ KY+SSLAQ GEPVG
Sbjct: 1096 SSKQRNSGS-------------------------MTHTNFLQLMEHKYVSSLAQPGEPVG 1130

Query: 1418 VIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQWR 1597
            V+A+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEIL  AS  IKTP +TCP    +
Sbjct: 1131 VLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILTAASAHIKTPFMTCPLRPNK 1190

Query: 1598 SKHEVVSLVSRVKKVTVADLVESMDVQ---LSIHPRQVARTYKLIIKVKDTEFVP----- 1753
            S  + + L  ++KK+TVAD++ESM V    +++   ++   YKL++K+   +  P     
Sbjct: 1191 SMEDAIRLADKMKKITVADIIESMKVSVVPVTVQDGRICSIYKLMMKLHKPKHYPKYTDV 1250

Query: 1754 -LADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDSGVRTQE 1930
             L D  +TL+  F+R LEDAIEN++  L+++SGI NF + +    SN A++D S  +T +
Sbjct: 1251 TLKDWEETLRVSFVRGLEDAIENNIALLAKISGITNFKTDAQPNSSNGAEDDPSNGKTND 1310


>ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citrus clementina]
            gi|557523327|gb|ESR34694.1| hypothetical protein
            CICLE_v10004132mg [Citrus clementina]
          Length = 1715

 Score =  675 bits (1741), Expect = 0.0
 Identities = 375/689 (54%), Positives = 470/689 (68%), Gaps = 55/689 (7%)
 Frame = +2

Query: 14   LLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYF--------------- 148
            LLP IWKPEPLWTGKQVITA+LNHITRGR P  VE  GK+P+++F               
Sbjct: 708  LLPAIWKPEPLWTGKQVITAVLNHITRGRPPFIVERGGKLPQDFFKTRFNADKQSGRKKN 767

Query: 149  -------TGDSYKN----------GEEDEDQNAEHN-----------LLVWKNELVRGVI 244
                   T   +K+          G+  E++ AE N           LL++KN+LVRGVI
Sbjct: 768  DKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVI 827

Query: 245  DKAQFGKFGLVHTVQELYGSNSAGILLSALSRLFTIFLQIHGFTCGVDDLIILPHYDAQR 424
            DKAQF  +GLVHTVQELYGSN+AG LLSALSRLFT+FLQ+HGFTCGVDDL+IL   + +R
Sbjct: 828  DKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 887

Query: 425  KDKLEG-EDVGEEVHCEFVKFKPG-QIGPEELQLEIQKVICSDRESATASLDMKMKNKLT 598
            K+ L G E++G+ VH E ++ + G +I P +L+ EI+K +    ++A A  DMKM ++L 
Sbjct: 888  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQL- 946

Query: 599  NKLTREGSQILKHLLTAGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRV 778
            NK T   S ++  LL+ GLLKP  KN IS+MTT+GAKGS VNFQQIS++LGQQELEGKRV
Sbjct: 947  NKHT--SSSVINDLLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRV 1004

Query: 779  PRMVSGKTLPCFPPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSG 958
            PRMVSGKTLP F PWD+  RAGGFI DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSG
Sbjct: 1005 PRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSG 1064

Query: 959  YLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHQTSFLKNFKALEDNRETIC 1138
            YLQRCLIKNLE LK+ YDY+VRDADGSI+QF YGEDGVDVHQTSF+  F AL  N+E I 
Sbjct: 1065 YLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAANQEMIY 1124

Query: 1139 QKFQNQRQF-NSYIEKLPEGLEEEARRFIQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHL 1315
            +K   Q    N+YI +LP+ L++ A +F                            +K L
Sbjct: 1125 KKCSGQLDASNAYIMELPDALKDNAEKFA---------------------------DKFL 1157

Query: 1316 SNKEKATEKEQNKFIELVKQKYLSSLAQSGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGE 1495
            SN     E  +  F++LVK K++ SLAQ GEPVG++AAQSVGEPSTQMTLNTFHLAGRGE
Sbjct: 1158 SN-----EMAKQDFLKLVKHKFVLSLAQPGEPVGLLAAQSVGEPSTQMTLNTFHLAGRGE 1212

Query: 1496 MNVTLGIPRLQEILMTASDVIKTPILTCPFSQWRSKHEVVSLVSRVKKVTVADLVESMDV 1675
            MNVTLGIPRLQEIL  AS  IKTP++TCP    +++ +   L  ++KK+TVAD+V+ + V
Sbjct: 1213 MNVTLGIPRLQEILTIASKDIKTPVITCPLLVGKTEDDAKRLADKLKKITVADIVKKISV 1272

Query: 1676 QL---SIHPRQVARTYKLIIKVKDTEFVP------LADIHDTLKSVFLRELEDAIENHVI 1828
            ++   + H  Q    Y L +++   +  P      L D  + L+ VF+RELED I+NH++
Sbjct: 1273 KVRAFTSHDGQACTVYVLTMELYKPKNYPTYTDITLEDWEEILEVVFVRELEDTIQNHLL 1332

Query: 1829 FLSRVSGIKNFMSSSISEVSNEADEDDSG 1915
             LS+++GIKN  S    + SNE D++ SG
Sbjct: 1333 LLSKINGIKNVASGLTQKASNETDQEGSG 1361


>gb|EOY09358.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
          Length = 1397

 Score =  675 bits (1741), Expect = 0.0
 Identities = 367/670 (54%), Positives = 467/670 (69%), Gaps = 31/670 (4%)
 Frame = +2

Query: 14   LLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDSYKNGEEDEDQN 193
            ++P I KP+PLWTGKQVI+++L+HITRGR P TV    KIP+++F     KN +   ++N
Sbjct: 415  IIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREEN 474

Query: 194  A--------------------EHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSA 313
                                 E  +L+++N+LVRGVIDKAQF  +GLVHTVQELYGSN+A
Sbjct: 475  QPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTA 534

Query: 314  GILLSALSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKFKP 490
            GILLS  SRLFT+FLQ+HGFTCGVDDL+I+   D +RK +LE  E    E H E    K 
Sbjct: 535  GILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVKV 594

Query: 491  GQIGPEELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFP 670
                  ELQLEI++ I  D E+A  +LD KM + L N+ + +G  +L  LL+ GL+K   
Sbjct: 595  NS--ETELQLEIERTIRRDGETALTALDRKMISVL-NENSSKG--VLTELLSEGLVKSMG 649

Query: 671  KNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGF 850
            +NCIS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLPCF PWD+ +RAGGF
Sbjct: 650  ENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGF 709

Query: 851  ITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDA 1030
            I+DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD+TVRDA
Sbjct: 710  ISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDA 769

Query: 1031 DGSIIQFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQRQFNSYIEK-LPEGLEEE 1207
            DGSI+QF YGEDG+DVHQTSF+  F+AL  N++ + +K  +Q       +K LP+GL  +
Sbjct: 770  DGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSK 829

Query: 1208 ARRFIQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLS 1387
            A +FI+E   K + ++I                            +   F+ L+K K+LS
Sbjct: 830  AEQFIREEIKKYQHQKI----------------------------KPKDFLNLLKLKFLS 861

Query: 1388 SLAQSGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTP 1567
            SLAQ GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS  I+TP
Sbjct: 862  SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTP 921

Query: 1568 ILTCPFSQWRSKHEVVSLVSRVKKVTVADLVESMDVQL---SIHPRQVARTYKLII---- 1726
            ++TCP  + ++K + + L +++KK+TVAD++ESM+V +   ++    +   YKL +    
Sbjct: 922  VMTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIYKLKMMLGK 981

Query: 1727 --KVKDTEFVPLADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEAD 1900
              K  +   + + D    LK VFLRELEDAI+NH++ LS++SGIK FM  S    SNE D
Sbjct: 982  PDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMD 1041

Query: 1901 EDDSGVRTQE 1930
            ED S  R++E
Sbjct: 1042 EDVSEGRSRE 1051


>gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score =  675 bits (1741), Expect = 0.0
 Identities = 367/670 (54%), Positives = 467/670 (69%), Gaps = 31/670 (4%)
 Frame = +2

Query: 14   LLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDSYKNGEEDEDQN 193
            ++P I KP+PLWTGKQVI+++L+HITRGR P TV    KIP+++F     KN +   ++N
Sbjct: 707  IIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREEN 766

Query: 194  A--------------------EHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSA 313
                                 E  +L+++N+LVRGVIDKAQF  +GLVHTVQELYGSN+A
Sbjct: 767  QPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTA 826

Query: 314  GILLSALSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKFKP 490
            GILLS  SRLFT+FLQ+HGFTCGVDDL+I+   D +RK +LE  E    E H E    K 
Sbjct: 827  GILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVKV 886

Query: 491  GQIGPEELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFP 670
                  ELQLEI++ I  D E+A  +LD KM + L N+ + +G  +L  LL+ GL+K   
Sbjct: 887  NS--ETELQLEIERTIRRDGETALTALDRKMISVL-NENSSKG--VLTELLSEGLVKSMG 941

Query: 671  KNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGF 850
            +NCIS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLPCF PWD+ +RAGGF
Sbjct: 942  ENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGF 1001

Query: 851  ITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDA 1030
            I+DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD+TVRDA
Sbjct: 1002 ISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDA 1061

Query: 1031 DGSIIQFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQRQFNSYIEK-LPEGLEEE 1207
            DGSI+QF YGEDG+DVHQTSF+  F+AL  N++ + +K  +Q       +K LP+GL  +
Sbjct: 1062 DGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSK 1121

Query: 1208 ARRFIQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLS 1387
            A +FI+E   K + ++I                            +   F+ L+K K+LS
Sbjct: 1122 AEQFIREEIKKYQHQKI----------------------------KPKDFLNLLKLKFLS 1153

Query: 1388 SLAQSGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTP 1567
            SLAQ GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS  I+TP
Sbjct: 1154 SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTP 1213

Query: 1568 ILTCPFSQWRSKHEVVSLVSRVKKVTVADLVESMDVQL---SIHPRQVARTYKLII---- 1726
            ++TCP  + ++K + + L +++KK+TVAD++ESM+V +   ++    +   YKL +    
Sbjct: 1214 VMTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIYKLKMMLGK 1273

Query: 1727 --KVKDTEFVPLADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEAD 1900
              K  +   + + D    LK VFLRELEDAI+NH++ LS++SGIK FM  S    SNE D
Sbjct: 1274 PDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMD 1333

Query: 1901 EDDSGVRTQE 1930
            ED S  R++E
Sbjct: 1334 EDVSEGRSRE 1343