BLASTX nr result
ID: Rehmannia24_contig00010142
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00010142
(503 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004238943.1| PREDICTED: 30S ribosomal protein 3-1, chloro... 124 1e-26
ref|XP_006362559.1| PREDICTED: 30S ribosomal protein 3, chloropl... 120 2e-25
gb|EXB97159.1| 30S ribosomal protein 3 [Morus notabilis] 113 2e-23
gb|EOY02101.1| Ribosomal protein PSRP-3/Ycf65 [Theobroma cacao] 113 2e-23
ref|XP_002529130.1| Plastid-specific 30S ribosomal protein 3, ch... 113 2e-23
ref|XP_002311451.2| hypothetical protein POPTR_0008s11750g [Popu... 112 5e-23
ref|XP_002315948.2| hypothetical protein POPTR_0010s13740g [Popu... 112 5e-23
emb|CAN68341.1| hypothetical protein VITISV_004015 [Vitis vinifera] 111 9e-23
sp|P82412.1|RRP3_SPIOL RecName: Full=30S ribosomal protein 3, ch... 110 2e-22
gb|AFK46934.1| unknown [Lotus japonicus] 107 1e-21
gb|AFK41643.1| unknown [Lotus japonicus] 107 1e-21
ref|XP_006826814.1| hypothetical protein AMTR_s00010p00055110 [A... 106 4e-21
gb|EMJ17195.1| hypothetical protein PRUPE_ppa011873mg [Prunus pe... 106 4e-21
ref|XP_004145640.1| PREDICTED: 30S ribosomal protein 3, chloropl... 105 5e-21
ref|XP_003620792.1| 30S ribosomal protein [Medicago truncatula] ... 105 5e-21
gb|ESW11139.1| hypothetical protein PHAVU_008G005100g [Phaseolus... 105 6e-21
ref|NP_001236243.1| uncharacterized protein LOC100306266 [Glycin... 105 6e-21
ref|XP_002530983.1| Plastid-specific 30S ribosomal protein 3, ch... 104 1e-20
ref|XP_006358052.1| PREDICTED: 30S ribosomal protein 3, chloropl... 104 1e-20
ref|XP_004304135.1| PREDICTED: 30S ribosomal protein 3, chloropl... 103 2e-20
>ref|XP_004238943.1| PREDICTED: 30S ribosomal protein 3-1, chloroplastic-like [Solanum
lycopersicum]
Length = 167
Score = 124 bits (312), Expect = 1e-26
Identities = 77/149 (51%), Positives = 89/149 (59%)
Frame = -1
Query: 449 MLSMSVQPSIKATLPCPFSIVSKNTCFQPSNFSVSVKPNASFRCSLSNNSDLKTKPVIRR 270
MLSMSVQ S+K L P S+ S+N P S + SF NN L T RR
Sbjct: 1 MLSMSVQSSLKGNLSIP-SLPSQN----PGYKSFKSCSSLSF-----NNKGLST----RR 46
Query: 269 IQKVRXXXXXXXXXXXXXXXTSDSELVEEPQKVEADVKSVVKPRLVLKFIWMEKNIGLGL 90
I K+ + +V+E +KV+ K + KPRLVLKFIWMEKNIGLGL
Sbjct: 47 IHKI---FASAVAEAESVEVETSESVVQEIEKVDMKKKVIEKPRLVLKFIWMEKNIGLGL 103
Query: 89 DQVIPGHGSVPLSPYFFWPRKDAWEELKT 3
DQV+P HGSVPLSPYFFWPRKDAWEELKT
Sbjct: 104 DQVLPDHGSVPLSPYFFWPRKDAWEELKT 132
>ref|XP_006362559.1| PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Solanum
tuberosum]
Length = 167
Score = 120 bits (300), Expect = 2e-25
Identities = 75/149 (50%), Positives = 88/149 (59%)
Frame = -1
Query: 449 MLSMSVQPSIKATLPCPFSIVSKNTCFQPSNFSVSVKPNASFRCSLSNNSDLKTKPVIRR 270
MLSMSVQ S+K L P S+ S+N ++ S K +S NN T RR
Sbjct: 1 MLSMSVQSSLKGNLSIP-SLPSQNPSYK------SFKSCSSLSL---NNKGSST----RR 46
Query: 269 IQKVRXXXXXXXXXXXXXXXTSDSELVEEPQKVEADVKSVVKPRLVLKFIWMEKNIGLGL 90
I K+ + +V E +KV+ K + KPRLVLKFIWMEKNIGLGL
Sbjct: 47 IHKI---FASAVTEAEPIAIETSEAVVLEIEKVDMKKKVIEKPRLVLKFIWMEKNIGLGL 103
Query: 89 DQVIPGHGSVPLSPYFFWPRKDAWEELKT 3
DQV+P HGSVPLSPYFFWPRKDAWEELKT
Sbjct: 104 DQVLPDHGSVPLSPYFFWPRKDAWEELKT 132
>gb|EXB97159.1| 30S ribosomal protein 3 [Morus notabilis]
Length = 181
Score = 113 bits (283), Expect = 2e-23
Identities = 49/66 (74%), Positives = 57/66 (86%)
Frame = -1
Query: 203 DSELVEEPQKVEADVKSVVKPRLVLKFIWMEKNIGLGLDQVIPGHGSVPLSPYFFWPRKD 24
D VE+ +K+ VK V KPRL+LKFIWMEKNIG+GLDQVIPGHG++PLSPY+FWPRKD
Sbjct: 80 DDSTVEDTEKLGVVVKPVAKPRLILKFIWMEKNIGIGLDQVIPGHGTIPLSPYYFWPRKD 139
Query: 23 AWEELK 6
AWEELK
Sbjct: 140 AWEELK 145
>gb|EOY02101.1| Ribosomal protein PSRP-3/Ycf65 [Theobroma cacao]
Length = 181
Score = 113 bits (283), Expect = 2e-23
Identities = 67/148 (45%), Positives = 84/148 (56%)
Frame = -1
Query: 449 MLSMSVQPSIKATLPCPFSIVSKNTCFQPSNFSVSVKPNASFRCSLSNNSDLKTKPVIRR 270
MLSM+ Q S+ +TL S+ + + N ++ K A R S + + T R
Sbjct: 1 MLSMATQSSVNSTLTW-HSLPYQKPALKSFNTAIFFKTKAGLRQSSTGLAKRITPT--SR 57
Query: 269 IQKVRXXXXXXXXXXXXXXXTSDSELVEEPQKVEADVKSVVKPRLVLKFIWMEKNIGLGL 90
I+++ T + P+ + VK V K RLVLKFIWMEKNIGLGL
Sbjct: 58 IERLTASAAPETLTAETSTETEIPSVTTSPETEKVVVKQVEKSRLVLKFIWMEKNIGLGL 117
Query: 89 DQVIPGHGSVPLSPYFFWPRKDAWEELK 6
DQVIPGHG+VPLSPYFFWPRKDAWEELK
Sbjct: 118 DQVIPGHGTVPLSPYFFWPRKDAWEELK 145
>ref|XP_002529130.1| Plastid-specific 30S ribosomal protein 3, chloroplast precursor,
putative [Ricinus communis] gi|223531409|gb|EEF33243.1|
Plastid-specific 30S ribosomal protein 3, chloroplast
precursor, putative [Ricinus communis]
Length = 180
Score = 113 bits (283), Expect = 2e-23
Identities = 51/59 (86%), Positives = 54/59 (91%)
Frame = -1
Query: 179 QKVEADVKSVVKPRLVLKFIWMEKNIGLGLDQVIPGHGSVPLSPYFFWPRKDAWEELKT 3
+KVE VK V KPRLVLKFIWMEKNIGL LDQVIPGHG++PLSPYFFWPRKDAWEELKT
Sbjct: 86 EKVEVAVKQVEKPRLVLKFIWMEKNIGLALDQVIPGHGTIPLSPYFFWPRKDAWEELKT 144
>ref|XP_002311451.2| hypothetical protein POPTR_0008s11750g [Populus trichocarpa]
gi|550332879|gb|EEE88818.2| hypothetical protein
POPTR_0008s11750g [Populus trichocarpa]
Length = 189
Score = 112 bits (280), Expect = 5e-23
Identities = 50/62 (80%), Positives = 55/62 (88%)
Frame = -1
Query: 191 VEEPQKVEADVKSVVKPRLVLKFIWMEKNIGLGLDQVIPGHGSVPLSPYFFWPRKDAWEE 12
++E +K E VK V KPRLVLKF+WMEKNIGL LDQVIPGHG+VPLSPYFFWPRKDAWEE
Sbjct: 90 IQETEKAELVVKRVEKPRLVLKFVWMEKNIGLALDQVIPGHGTVPLSPYFFWPRKDAWEE 149
Query: 11 LK 6
LK
Sbjct: 150 LK 151
>ref|XP_002315948.2| hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
gi|550329750|gb|EEF02119.2| hypothetical protein
POPTR_0010s13740g [Populus trichocarpa]
Length = 189
Score = 112 bits (280), Expect = 5e-23
Identities = 72/153 (47%), Positives = 79/153 (51%), Gaps = 14/153 (9%)
Frame = -1
Query: 422 IKATLPCPFSIVSKNT---CFQPS------NFSVSVKPNASFRCSLSNNSDLKTKPVIRR 270
+ C FS V N+ C PS FS + KPN S D K K V R
Sbjct: 2 LSVAFQCGFSNVFTNSSLPCQTPSCKTFKATFSTNPKPNLIHS---STFLDRKRKRVSRN 58
Query: 269 IQKVRXXXXXXXXXXXXXXXTSDSELVE-----EPQKVEADVKSVVKPRLVLKFIWMEKN 105
+ +E E E +K E VK V KPRLVLKFIWMEKN
Sbjct: 59 QRYTTFAAPEALTVETPIDTPPSTETEESIPTQETEKAEVLVKQVEKPRLVLKFIWMEKN 118
Query: 104 IGLGLDQVIPGHGSVPLSPYFFWPRKDAWEELK 6
IGL LDQVIPGHG+VPLSPYFFWPRKDAWEELK
Sbjct: 119 IGLALDQVIPGHGTVPLSPYFFWPRKDAWEELK 151
>emb|CAN68341.1| hypothetical protein VITISV_004015 [Vitis vinifera]
Length = 179
Score = 111 bits (278), Expect = 9e-23
Identities = 65/148 (43%), Positives = 88/148 (59%), Gaps = 2/148 (1%)
Frame = -1
Query: 440 MSVQPSIKATLPCPFSIVSKNTCFQPSN--FSVSVKPNASFRCSLSNNSDLKTKPVIRRI 267
M+ Q SI +T C S S+N F+ S F + + P F+ S + ++TKP ++ +
Sbjct: 1 MAAQSSINSTFICS-SFPSQNPSFKISKTPFPIPLNPKPLFQRSSTXTPGIRTKPSMK-L 58
Query: 266 QKVRXXXXXXXXXXXXXXXTSDSELVEEPQKVEADVKSVVKPRLVLKFIWMEKNIGLGLD 87
Q++ S EE +KVE VK + PRLVLKF+WMEKNIG+ LD
Sbjct: 59 QRLAVSAASEARTAEPSTANPISS--EENEKVEVIVKVMETPRLVLKFVWMEKNIGVALD 116
Query: 86 QVIPGHGSVPLSPYFFWPRKDAWEELKT 3
QVIPG+G+ PLSPY+FWP KDAWEELK+
Sbjct: 117 QVIPGYGTNPLSPYYFWPGKDAWEELKS 144
>sp|P82412.1|RRP3_SPIOL RecName: Full=30S ribosomal protein 3, chloroplastic; AltName:
Full=Plastid-specific 30S ribosomal protein 3;
Short=PSRP-3; Flags: Precursor
gi|7578871|gb|AAF64163.1|AF239218_1 plastid-specific
ribosomal protein 3 precursor [Spinacia oleracea]
Length = 179
Score = 110 bits (275), Expect = 2e-22
Identities = 64/154 (41%), Positives = 85/154 (55%), Gaps = 6/154 (3%)
Frame = -1
Query: 449 MLSMSVQPSIKATLPCPFSIVSKNTCFQPSNFSVSVKPNASFRCSLSNNSDLKTKPVIRR 270
MLSM+VQP+I A ++K + +Q S+ +F +N + P +
Sbjct: 1 MLSMAVQPNINA--------IAKPSIYQSPKLSLKPFKTPAF----ANPKPFFSSPSFSQ 48
Query: 269 IQKVRXXXXXXXXXXXXXXXTS------DSELVEEPQKVEADVKSVVKPRLVLKFIWMEK 108
++K D +L+ +K++ VK + KPRLVLKFIWMEK
Sbjct: 49 LKKKNNWSLFVAPETISDVAIMGNEVDIDDDLLVNKEKLKVLVKPMDKPRLVLKFIWMEK 108
Query: 107 NIGLGLDQVIPGHGSVPLSPYFFWPRKDAWEELK 6
NIGL LDQ IPGHG+VPLSPY+FWPRKDAWEELK
Sbjct: 109 NIGLALDQTIPGHGTVPLSPYYFWPRKDAWEELK 142
>gb|AFK46934.1| unknown [Lotus japonicus]
Length = 175
Score = 107 bits (268), Expect = 1e-21
Identities = 47/66 (71%), Positives = 54/66 (81%)
Frame = -1
Query: 203 DSELVEEPQKVEADVKSVVKPRLVLKFIWMEKNIGLGLDQVIPGHGSVPLSPYFFWPRKD 24
D+ L PQK+ VK KPRLVLKFIWMEKNIG+ LDQ +PGHG++PLSPY+FWPRKD
Sbjct: 74 DTSLSPPPQKLGVVVKPTDKPRLVLKFIWMEKNIGIALDQAVPGHGTIPLSPYYFWPRKD 133
Query: 23 AWEELK 6
AWEELK
Sbjct: 134 AWEELK 139
>gb|AFK41643.1| unknown [Lotus japonicus]
Length = 175
Score = 107 bits (268), Expect = 1e-21
Identities = 47/66 (71%), Positives = 54/66 (81%)
Frame = -1
Query: 203 DSELVEEPQKVEADVKSVVKPRLVLKFIWMEKNIGLGLDQVIPGHGSVPLSPYFFWPRKD 24
D+ L PQK+ VK KPRLVLKFIWMEKNIG+ LDQ +PGHG++PLSPY+FWPRKD
Sbjct: 74 DTSLSPPPQKLGVVVKPTDKPRLVLKFIWMEKNIGIALDQAVPGHGTIPLSPYYFWPRKD 133
Query: 23 AWEELK 6
AWEELK
Sbjct: 134 AWEELK 139
>ref|XP_006826814.1| hypothetical protein AMTR_s00010p00055110 [Amborella trichopoda]
gi|548831243|gb|ERM94051.1| hypothetical protein
AMTR_s00010p00055110 [Amborella trichopoda]
Length = 189
Score = 106 bits (264), Expect = 4e-21
Identities = 46/62 (74%), Positives = 54/62 (87%)
Frame = -1
Query: 188 EEPQKVEADVKSVVKPRLVLKFIWMEKNIGLGLDQVIPGHGSVPLSPYFFWPRKDAWEEL 9
EE + VK+ KPRLVLKFIW+EKNIGLGLDQVIPGHG++PLSPY+FWPRKDAWEEL
Sbjct: 94 EETATAKVVVKTPTKPRLVLKFIWLEKNIGLGLDQVIPGHGTIPLSPYYFWPRKDAWEEL 153
Query: 8 KT 3
++
Sbjct: 154 RS 155
>gb|EMJ17195.1| hypothetical protein PRUPE_ppa011873mg [Prunus persica]
Length = 192
Score = 106 bits (264), Expect = 4e-21
Identities = 46/60 (76%), Positives = 53/60 (88%)
Frame = -1
Query: 185 EPQKVEADVKSVVKPRLVLKFIWMEKNIGLGLDQVIPGHGSVPLSPYFFWPRKDAWEELK 6
E +K+ VK + KPRLVLKFIWMEKNIG+ LDQ+IPGHGS+PLSPY+FWPRKDAWEELK
Sbjct: 97 EKEKLGVVVKPIEKPRLVLKFIWMEKNIGIALDQMIPGHGSIPLSPYYFWPRKDAWEELK 156
>ref|XP_004145640.1| PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis
sativus] gi|449484535|ref|XP_004156909.1| PREDICTED: 30S
ribosomal protein 3, chloroplastic-like [Cucumis
sativus]
Length = 192
Score = 105 bits (263), Expect = 5e-21
Identities = 48/68 (70%), Positives = 57/68 (83%), Gaps = 2/68 (2%)
Frame = -1
Query: 203 DSELVEEP--QKVEADVKSVVKPRLVLKFIWMEKNIGLGLDQVIPGHGSVPLSPYFFWPR 30
DS+ V P +K+ VK + KPRLVLKFIWMEKNIG+ LDQ+IPGHG++PLSPY+FWPR
Sbjct: 89 DSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPR 148
Query: 29 KDAWEELK 6
KDAWEELK
Sbjct: 149 KDAWEELK 156
>ref|XP_003620792.1| 30S ribosomal protein [Medicago truncatula]
gi|217075300|gb|ACJ86010.1| unknown [Medicago
truncatula] gi|355495807|gb|AES77010.1| 30S ribosomal
protein [Medicago truncatula]
gi|388491518|gb|AFK33825.1| unknown [Medicago
truncatula]
Length = 161
Score = 105 bits (263), Expect = 5e-21
Identities = 46/60 (76%), Positives = 53/60 (88%)
Frame = -1
Query: 185 EPQKVEADVKSVVKPRLVLKFIWMEKNIGLGLDQVIPGHGSVPLSPYFFWPRKDAWEELK 6
+ QK+ VK KPRLVLKFIWMEKNIG+GLDQ+IPGHG++PLSPY+FWPRKDAWEELK
Sbjct: 65 QSQKLGVVVKPTDKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELK 124
>gb|ESW11139.1| hypothetical protein PHAVU_008G005100g [Phaseolus vulgaris]
Length = 164
Score = 105 bits (262), Expect = 6e-21
Identities = 44/60 (73%), Positives = 53/60 (88%)
Frame = -1
Query: 185 EPQKVEADVKSVVKPRLVLKFIWMEKNIGLGLDQVIPGHGSVPLSPYFFWPRKDAWEELK 6
+P+K+ VK+ KPR+VLKFIWMEKNIG+ LDQ IPGHG++PLSPY+FWPRKDAWEELK
Sbjct: 69 QPEKLGVVVKATEKPRIVLKFIWMEKNIGIALDQTIPGHGTIPLSPYYFWPRKDAWEELK 128
>ref|NP_001236243.1| uncharacterized protein LOC100306266 [Glycine max]
gi|255628049|gb|ACU14369.1| unknown [Glycine max]
Length = 158
Score = 105 bits (262), Expect = 6e-21
Identities = 44/60 (73%), Positives = 53/60 (88%)
Frame = -1
Query: 185 EPQKVEADVKSVVKPRLVLKFIWMEKNIGLGLDQVIPGHGSVPLSPYFFWPRKDAWEELK 6
+P+K+ VK KPRLVLKFIWMEKNIG+ LDQ++PGHG++PLSPY+FWPRKDAWEELK
Sbjct: 63 QPEKLGVVVKPTEKPRLVLKFIWMEKNIGIALDQMVPGHGTIPLSPYYFWPRKDAWEELK 122
>ref|XP_002530983.1| Plastid-specific 30S ribosomal protein 3, chloroplast precursor,
putative [Ricinus communis] gi|223529435|gb|EEF31395.1|
Plastid-specific 30S ribosomal protein 3, chloroplast
precursor, putative [Ricinus communis]
Length = 174
Score = 104 bits (260), Expect = 1e-20
Identities = 62/153 (40%), Positives = 92/153 (60%), Gaps = 8/153 (5%)
Frame = -1
Query: 440 MSVQPSIKATLPCPFSIVSKNTCFQPSNFS---VSVKPNASFRCSLSNNSDLKTKPVIRR 270
M++QP IK++L P ++ S+ +P S +S +P +S+ LS +S T I+
Sbjct: 1 MAIQPKIKSSLK-PVNLTSQTLFLKPLKISTPFISFQPKSSY---LSIHSPATTLKTIQD 56
Query: 269 IQKVRXXXXXXXXXXXXXXXTSDSELVEE-----PQKVEADVKSVVKPRLVLKFIWMEKN 105
+ K++ +DS L +E +K+ VK + KPR+VLK IWMEK
Sbjct: 57 LPKLKLSASA-----------ADSILSQEVSPTHKEKLGVVVKPMEKPRIVLKLIWMEKA 105
Query: 104 IGLGLDQVIPGHGSVPLSPYFFWPRKDAWEELK 6
IG+GLDQVIPG G++PLSPY+FWP++DAWE+LK
Sbjct: 106 IGVGLDQVIPGFGTIPLSPYYFWPKEDAWEQLK 138
>ref|XP_006358052.1| PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Solanum
tuberosum]
Length = 176
Score = 104 bits (259), Expect = 1e-20
Identities = 45/60 (75%), Positives = 53/60 (88%)
Frame = -1
Query: 185 EPQKVEADVKSVVKPRLVLKFIWMEKNIGLGLDQVIPGHGSVPLSPYFFWPRKDAWEELK 6
+ +K+ VK + KPRLVLKFIWMEKNIG+ LDQVIPGHG++PLSPY+FWPRKDAWEELK
Sbjct: 81 QKEKLGVVVKPLEKPRLVLKFIWMEKNIGISLDQVIPGHGTIPLSPYYFWPRKDAWEELK 140
>ref|XP_004304135.1| PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Fragaria
vesca subsp. vesca]
Length = 182
Score = 103 bits (258), Expect = 2e-20
Identities = 45/58 (77%), Positives = 52/58 (89%)
Frame = -1
Query: 179 QKVEADVKSVVKPRLVLKFIWMEKNIGLGLDQVIPGHGSVPLSPYFFWPRKDAWEELK 6
+K+ VK + KPRLVLKFIWMEKNIG+ LDQ+IPGHGS+PLSPY+FWPRKDAWEELK
Sbjct: 89 EKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGSIPLSPYYFWPRKDAWEELK 146