BLASTX nr result
ID: Rehmannia24_contig00009941
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00009941
(1286 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC13594.1| contains similarity to reverse transcriptase-like... 53 5e-11
ref|XP_006493121.1| PREDICTED: putative ribonuclease H protein A... 44 9e-11
ref|XP_006493122.1| PREDICTED: putative ribonuclease H protein A... 44 9e-11
ref|XP_006464882.1| PREDICTED: putative ribonuclease H protein A... 44 2e-10
ref|YP_002000555.1| orf258 [Oryza sativa Japonica Group] gi|2349... 49 3e-10
gb|ABA99231.1| hypothetical protein LOC_Os12g34030 [Oryza sativa... 49 1e-09
dbj|BAI67988.1| hypothetical protein [Oryza sativa Indica Group]... 49 1e-09
ref|XP_006494016.1| PREDICTED: uncharacterized protein LOC102608... 39 4e-09
ref|XP_004301837.1| PREDICTED: putative ribonuclease H protein A... 39 7e-09
ref|XP_006485451.1| PREDICTED: uncharacterized protein LOC102622... 38 2e-08
gb|EMJ08972.1| hypothetical protein PRUPE_ppa026368mg, partial [... 37 4e-08
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 43 5e-08
ref|XP_004298091.1| PREDICTED: uncharacterized protein LOC101303... 44 6e-08
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 42 7e-08
ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis ... 42 7e-08
ref|NP_001060259.1| Os07g0613900 [Oryza sativa Japonica Group] g... 46 2e-07
gb|EAZ40645.1| hypothetical protein OsJ_25114 [Oryza sativa Japo... 46 2e-07
gb|ABK28206.1| unknown [Arabidopsis thaliana] 46 2e-07
ref|NP_180979.1| polynucleotidyl transferase, ribonuclease H-lik... 46 2e-07
dbj|BAB08714.1| non-LTR retroelement reverse transcriptase-like ... 43 3e-07
>gb|AAC13594.1| contains similarity to reverse transcriptase-like proteins
[Arabidopsis thaliana]
Length = 301
Score = 52.8 bits (125), Expect(2) = 5e-11
Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 12/224 (5%)
Frame = +1
Query: 592 LDSFYNTNRIQ----LSVYLVWWLWKTRNTWIFQNTRWKEIDVVNRAL---HDWQEFDIA 750
LD++YN N + +L+W +WK N + N R V+ + + +DW
Sbjct: 75 LDAYYNNNHTTQQKVIHFWLIWKIWKAHNNLVLNNYRECPSMVIQQTVAEVYDWT----- 129
Query: 751 AGTKIGGAKKET-SAKENMEARTVDTRSVGHYLVV-LSAVKVGSNKSGWGGWIRAEKEGI 924
T I G + + A+ + +T + ++ A +N+ G GGWI + G
Sbjct: 130 --TIINGMQAMSLPARIQTKGKTSWMKHAAPFVKCNFDAGFQENNEQGMGGWILRDHYGE 187
Query: 925 TRAWATS-RDEVYHPVEATLVGIRQALCFAEKSKARTLTIQIENRSLVQSLNSRATFDSK 1101
+AW +S D V P++A + A+ + + + L+ ++N ++ S+
Sbjct: 188 AKAWGSSILDHVITPLDAETKALIVAMQQVWIRGYKLVQFEGGCEVLINAINGKS---SR 244
Query: 1102 CE--KIAEDICLLSSLFDSVVFANQDHKNLSFCNRLVSLALSSD 1227
CE + DI SS F SV F + + + LVSL S +
Sbjct: 245 CEIASLLHDIDYWSSKFSSVTFRFTNRLCNNIAHHLVSLQSSQN 288
Score = 42.7 bits (99), Expect(2) = 5e-11
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +3
Query: 384 SLPTAMALNQRGRKMDPICTLCGNEQETTEHVFF*CERAQLVWKLS 521
+LPT L RG + P C+ C E+E+ HV F C A +W+LS
Sbjct: 9 ALPTCSRLVTRGMNISPYCSRCLTEEESICHVLFTCPYAMRIWRLS 54
>ref|XP_006493121.1| PREDICTED: putative ribonuclease H protein At1g65750-like isoform
X1 [Citrus sinensis]
Length = 968
Score = 44.3 bits (103), Expect(3) = 9e-11
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +2
Query: 200 DRYVWHWDSKGRFTVNSAYKQLSQMQVWKSDRPEPSGGSKHTERQWNKCWKLNIKNK 370
D+ +WH+D KG ++V S Y+ QM+ P SK WN W L I K
Sbjct: 613 DQVLWHYDKKGNYSVKSGYQLALQMKF-----PNRPSSSKEDNNSWNSIWYLQIPEK 664
Score = 35.4 bits (80), Expect(3) = 9e-11
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 378 NHSLPTAMALNQRGRKMDPICTLCGNEQETTEHVFF*CERAQLVWKLS 521
N LPT+ L +R P C C + +ET H F C+ ++ +WKL+
Sbjct: 674 NDLLPTSENLWKRRILQTPWCQRCRSHRETIFHSLFDCKASRKIWKLT 721
Score = 34.3 bits (77), Expect(3) = 9e-11
Identities = 50/218 (22%), Positives = 90/218 (41%), Gaps = 14/218 (6%)
Frame = +1
Query: 619 IQLSVYLVWWLWKTRNTWIFQNTRWKEIDVVNRALHDWQEFDIAAGTKIGGAKKETSAKE 798
++L V + W +W +RN +IFQN + D+Q +A I + K +
Sbjct: 751 MELIVAVCWSIWHSRNLFIFQNKK-----------EDFQ-LSVAGAEAIVQSYKRIQMPQ 798
Query: 799 NMEARTVDTRSVGHY---------LVVLSAVKVGSNKSGWGGWIR-AEKEGITRAWATSR 948
D S H+ + V +A+K+ + + G G IR +E + IT A S+
Sbjct: 799 LQAFSDQDLVSHKHWKCPPAGWFKVNVDAAIKLENQRVGLGIVIRNSEGKFITAAIKPSK 858
Query: 949 --DEV-YHPVEATLVGIRQALCFAEKSKARTLTIQIENRSLVQSLNSRATFDSKCEKIAE 1119
D V Y EAT G+ AE + L ++ +++ + +++R + ++ I
Sbjct: 859 WIDRVDYAEAEATRFGLE----VAESAGCLPLIVETDSKEVTDLVSARKSTKAEIFWIVS 914
Query: 1120 DICLLSSLFDSVVFANQDHKNLSFCNRLVSLALS-SDC 1230
++ V + F + L LAL +DC
Sbjct: 915 EVQDTMKRLKHVKLQHSPRACNGFAHTLAKLALDYTDC 952
>ref|XP_006493122.1| PREDICTED: putative ribonuclease H protein At1g65750-like isoform
X2 [Citrus sinensis]
Length = 765
Score = 44.3 bits (103), Expect(3) = 9e-11
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +2
Query: 200 DRYVWHWDSKGRFTVNSAYKQLSQMQVWKSDRPEPSGGSKHTERQWNKCWKLNIKNK 370
D+ +WH+D KG ++V S Y+ QM+ P SK WN W L I K
Sbjct: 410 DQVLWHYDKKGNYSVKSGYQLALQMKF-----PNRPSSSKEDNNSWNSIWYLQIPEK 461
Score = 35.4 bits (80), Expect(3) = 9e-11
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 378 NHSLPTAMALNQRGRKMDPICTLCGNEQETTEHVFF*CERAQLVWKLS 521
N LPT+ L +R P C C + +ET H F C+ ++ +WKL+
Sbjct: 471 NDLLPTSENLWKRRILQTPWCQRCRSHRETIFHSLFDCKASRKIWKLT 518
Score = 34.3 bits (77), Expect(3) = 9e-11
Identities = 50/218 (22%), Positives = 90/218 (41%), Gaps = 14/218 (6%)
Frame = +1
Query: 619 IQLSVYLVWWLWKTRNTWIFQNTRWKEIDVVNRALHDWQEFDIAAGTKIGGAKKETSAKE 798
++L V + W +W +RN +IFQN + D+Q +A I + K +
Sbjct: 548 MELIVAVCWSIWHSRNLFIFQNKK-----------EDFQ-LSVAGAEAIVQSYKRIQMPQ 595
Query: 799 NMEARTVDTRSVGHY---------LVVLSAVKVGSNKSGWGGWIR-AEKEGITRAWATSR 948
D S H+ + V +A+K+ + + G G IR +E + IT A S+
Sbjct: 596 LQAFSDQDLVSHKHWKCPPAGWFKVNVDAAIKLENQRVGLGIVIRNSEGKFITAAIKPSK 655
Query: 949 --DEV-YHPVEATLVGIRQALCFAEKSKARTLTIQIENRSLVQSLNSRATFDSKCEKIAE 1119
D V Y EAT G+ AE + L ++ +++ + +++R + ++ I
Sbjct: 656 WIDRVDYAEAEATRFGLE----VAESAGCLPLIVETDSKEVTDLVSARKSTKAEIFWIVS 711
Query: 1120 DICLLSSLFDSVVFANQDHKNLSFCNRLVSLALS-SDC 1230
++ V + F + L LAL +DC
Sbjct: 712 EVQDTMKRLKHVKLQHSPRACNGFAHTLAKLALDYTDC 749
>ref|XP_006464882.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 769
Score = 44.3 bits (103), Expect(3) = 2e-10
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +2
Query: 200 DRYVWHWDSKGRFTVNSAYKQLSQMQVWKSDRPEPSGGSKHTERQWNKCWKLNIKNK 370
D+ +WH+D KG ++V S Y+ QM+ P SK WN W L I K
Sbjct: 410 DQVLWHYDKKGNYSVKSGYQLALQMKF-----PNRPSSSKEDNNSWNSIWYLQIPEK 461
Score = 35.4 bits (80), Expect(3) = 2e-10
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 378 NHSLPTAMALNQRGRKMDPICTLCGNEQETTEHVFF*CERAQLVWKLS 521
N LPT+ L +R P C C + +ET H F C+ ++ +WKL+
Sbjct: 471 NDLLPTSENLWKRRILQTPWCQRCRSHRETIFHSLFDCKASRKIWKLT 518
Score = 33.1 bits (74), Expect(3) = 2e-10
Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 14/218 (6%)
Frame = +1
Query: 619 IQLSVYLVWWLWKTRNTWIFQNTRWKEIDVVNRALHDWQEFDIAAGTKIGGAKKETSAKE 798
++L V + W +W +RN +IFQN + D+Q +A I + K +
Sbjct: 548 MELIVAVCWSIWHSRNLFIFQNKK-----------EDFQ-LSVAGAEAIVQSYKRIQMPQ 595
Query: 799 NMEARTVDTRSVGHY---------LVVLSAVKVGSNKSGWGGWIR-AEKEGITRAWATSR 948
D S H+ + V +A+K+ + + G G IR +E + IT A S+
Sbjct: 596 LQAFSNQDLVSHKHWKCPPAGWFKVNVDAAIKLENQRVGLGIVIRNSEGKFITAAIKPSK 655
Query: 949 --DEV-YHPVEATLVGIRQALCFAEKSKARTLTIQIENRSLVQSLNSRATFDSKCEKIAE 1119
D V Y EAT G+ AE + L ++ +++ + +++R + ++ I
Sbjct: 656 WLDRVDYAEAEATRFGLE----VAESAGCLPLIVETDSKEVTDLVSARKSTKAEIFWIVS 711
Query: 1120 DICLLSSLFDSVVFANQDHKNLSFCNRLVSLALS-SDC 1230
++ V + F + L L L +DC
Sbjct: 712 EVQDTMKRLKHVKIQHSPRTCNGFAHTLAKLVLDYTDC 749
>ref|YP_002000555.1| orf258 [Oryza sativa Japonica Group] gi|23495378|dbj|BAC19859.1|
orf258 [Oryza sativa Japonica Group]
Length = 258
Score = 48.9 bits (115), Expect(3) = 3e-10
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Frame = +2
Query: 113 RWMTHKSKKLFFRF----ILQKPQVKIEPEGTKDRYVWHWDSKGRFTVNSAYKQLSQMQV 280
+W K +++FF IL P+ + E + D + W WD G FTV SAY++L Q
Sbjct: 25 QWDVEKVQRIFFPLDAAAILNMPRPRTEQD---DFWAWAWDRTGIFTVRSAYRELIQ--- 78
Query: 281 WKSDRPEP-SGGSKHTERQWNKCWKLNIKNK 370
+ EP +G S E W W+L I K
Sbjct: 79 -RCGLSEPATGSSTGDEATWKALWRLRIMPK 108
Score = 40.0 bits (92), Expect(3) = 3e-10
Identities = 23/68 (33%), Positives = 28/68 (41%)
Frame = +3
Query: 387 LPTAMALNQRGRKMDPICTLCGNEQETTEHVFF*CERAQLVWKLSPVQWFDTLHPTFTMK 566
LP A L + K C LCGN+ ET H CE A+L W + FD P
Sbjct: 121 LPCAAELRRSHMKEISNCPLCGNDNETKFHALVECEHAKLFWSAAQ-DLFDLKMPRLNPA 179
Query: 567 KWWEGVCE 590
W V +
Sbjct: 180 TWSRDVLD 187
Score = 23.5 bits (49), Expect(3) = 3e-10
Identities = 7/40 (17%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Frame = +1
Query: 625 LSVYLVWWLWKTRNTWIFQNTRWK---EIDVVNRALHDWQ 735
++V ++W +W +RN++ + +++ +++V+ ++ W+
Sbjct: 198 IAVSVMWTIWGSRNSYNHGDVKYQPLSSVELVDELINLWR 237
>gb|ABA99231.1| hypothetical protein LOC_Os12g34030 [Oryza sativa Japonica Group]
Length = 346
Score = 48.9 bits (115), Expect(3) = 1e-09
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Frame = +2
Query: 113 RWMTHKSKKLFFRF----ILQKPQVKIEPEGTKDRYVWHWDSKGRFTVNSAYKQLSQMQV 280
+W K +++FF IL P+ + E + D + W WD G FTV SAY++L Q
Sbjct: 54 QWDVEKVQRIFFPLDAAAILNMPRPRTEQD---DFWAWAWDRTGIFTVRSAYRELIQ--- 107
Query: 281 WKSDRPEP-SGGSKHTERQWNKCWKLNIKNK 370
+ EP +G S E W W+L I K
Sbjct: 108 -RCGLSEPATGSSTGDEATWKALWRLRIMPK 137
Score = 40.0 bits (92), Expect(3) = 1e-09
Identities = 23/68 (33%), Positives = 28/68 (41%)
Frame = +3
Query: 387 LPTAMALNQRGRKMDPICTLCGNEQETTEHVFF*CERAQLVWKLSPVQWFDTLHPTFTMK 566
LP A L + K C LCGN+ ET H CE A+L W + FD P
Sbjct: 150 LPCAAELRRSHMKEISNCPLCGNDNETKFHALVECEHAKLFWSAAQ-DLFDLKMPRLNPA 208
Query: 567 KWWEGVCE 590
W V +
Sbjct: 209 TWSRDVLD 216
Score = 21.2 bits (43), Expect(3) = 1e-09
Identities = 5/26 (19%), Positives = 18/26 (69%)
Frame = +1
Query: 625 LSVYLVWWLWKTRNTWIFQNTRWKEI 702
++V ++W +W +RN++ + +++ +
Sbjct: 227 IAVSVMWTIWGSRNSYNHGDVKYQPL 252
>dbj|BAI67988.1| hypothetical protein [Oryza sativa Indica Group]
gi|374277648|gb|AEZ03754.1| hypothetical protein
(mitochondrion) [Oryza sativa Indica Group]
gi|374277660|gb|AEZ03765.1| hypothetical protein
(mitochondrion) [Oryza sativa Indica Group]
Length = 317
Score = 48.9 bits (115), Expect(3) = 1e-09
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Frame = +2
Query: 113 RWMTHKSKKLFFRF----ILQKPQVKIEPEGTKDRYVWHWDSKGRFTVNSAYKQLSQMQV 280
+W K +++FF IL P+ + E + D + W WD G FTV SAY++L Q
Sbjct: 25 QWDVEKVQRIFFPLDAAAILNMPRPRTEQD---DFWAWAWDRTGIFTVRSAYRELIQ--- 78
Query: 281 WKSDRPEP-SGGSKHTERQWNKCWKLNIKNK 370
+ EP +G S E W W+L I K
Sbjct: 79 -RCGLSEPATGSSTGDEATWKALWRLRIMPK 108
Score = 40.0 bits (92), Expect(3) = 1e-09
Identities = 23/68 (33%), Positives = 28/68 (41%)
Frame = +3
Query: 387 LPTAMALNQRGRKMDPICTLCGNEQETTEHVFF*CERAQLVWKLSPVQWFDTLHPTFTMK 566
LP A L + K C LCGN+ ET H CE A+L W + FD P
Sbjct: 121 LPCAAELRRSHMKEISNCPLCGNDNETKFHALVECEHAKLFWSAAQ-DLFDLKMPRLNPA 179
Query: 567 KWWEGVCE 590
W V +
Sbjct: 180 TWSRDVLD 187
Score = 21.2 bits (43), Expect(3) = 1e-09
Identities = 5/26 (19%), Positives = 18/26 (69%)
Frame = +1
Query: 625 LSVYLVWWLWKTRNTWIFQNTRWKEI 702
++V ++W +W +RN++ + +++ +
Sbjct: 198 IAVSVMWTIWGSRNSYNHGDVKYQPL 223
>ref|XP_006494016.1| PREDICTED: uncharacterized protein LOC102608298 [Citrus sinensis]
Length = 1570
Score = 39.3 bits (90), Expect(3) = 4e-09
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 197 KDRYVWHWDSKGRFTVNSAYKQLSQMQVWKSDRPEPSGGSKHTERQWNKCWKLNIKNK 370
KD +WH+D K +++V S Y+ ++ P S +E QWN W L + K
Sbjct: 912 KDEVIWHYDRKCQYSVKSGYQIALNLKF-----PAKPTSSATSENQWNAIWLLTLPEK 964
Score = 35.8 bits (81), Expect(3) = 4e-09
Identities = 39/183 (21%), Positives = 77/183 (42%), Gaps = 4/183 (2%)
Frame = +1
Query: 619 IQLSVYLVWWLWKTRNTWIFQNTRWKEIDVVNRA---LHDWQEFDIAAGTKIGGAKKETS 789
I+L V ++W +W +N+WIF+ + V++A L ++ + A T I +
Sbjct: 1051 IELLVTILWMIWNAQNSWIFKGVKDSPHVTVSKAEAVLEAFRRTQLPAATHI-----DIQ 1105
Query: 790 AKENMEARTVDTRSVGHYLVVLSAVKVGSNKSGWGGWIRAEKEGITRAWATSRDEVYHPV 969
+ ++A R GH+ V + A + G + ++ G A A + Y V
Sbjct: 1106 SSSKLKAWKPPQR--GHFKVNVDAATNSEKQIASLGAVIRDEAGNVIAAAVKVSKFYGDV 1163
Query: 970 -EATLVGIRQALCFAEKSKARTLTIQIENRSLVQSLNSRATFDSKCEKIAEDICLLSSLF 1146
A I L A + +L ++ + + +V+ +N+ S+ I ++ + F
Sbjct: 1164 FIAEAEAIEWGLRLAGNACTESLIVESDAQEVVKLVNNSQGCRSEIFWIISEVQRVLKSF 1223
Query: 1147 DSV 1155
SV
Sbjct: 1224 SSV 1226
Score = 33.1 bits (74), Expect(3) = 4e-09
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 387 LPTAMALNQRGRKMDPICTLCGNEQETTEHVFF*CERAQLVWKLS 521
LP+A L +R +P+C C + ET H C+ + +WK++
Sbjct: 977 LPSAENLWKRKVIQEPLCQFCNKKLETIFHALVGCKVVKKIWKIT 1021
>ref|XP_004301837.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 420
Score = 38.9 bits (89), Expect(3) = 7e-09
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +3
Query: 387 LPTAMALNQRGRKMDPICTLCGNEQETTEHVFF*CERAQLVWKLSPVQWFDTLHPTFTMK 566
LPT +AL+++ + +C C E ET H+F C A + +SP+ H M+
Sbjct: 174 LPTKVALSKKICMEEQLCPFCRTENETALHLFKECSGAACMLIISPLGLRARNHGANNME 233
Query: 567 KWWEGVCEI 593
+W G+ ++
Sbjct: 234 EWVVGMMDV 242
Score = 37.4 bits (85), Expect(3) = 7e-09
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +2
Query: 116 WMTHKSKKLFFRFILQK-PQVKIEPEGTKDRYVWHWDSKGRFTVNSAYKQLSQMQVWKS- 289
WM ++LF+ ++ ++ + DR +WH+D G ++V S Y + +S
Sbjct: 78 WMVDLLEELFYADEVEMIRKIPLSIRSPDDRLIWHFDKHGLYSVRSGYHLAGGVNADQSR 137
Query: 290 -DRPEPSGGSKHTERQWNKCWKLNIKNK 370
P+G +K W + WK+ + K
Sbjct: 138 GSSSSPAGSNK----TWKQVWKVRVLPK 161
Score = 31.2 bits (69), Expect(3) = 7e-09
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 610 TNRIQLSVYLVWWLWKTRNTWIFQNTRWKEIDVVNRALHDWQEF 741
T ++++ L+W LW RN ++Q T + I+ V ++ QE+
Sbjct: 245 TGQVEMFFMLLWALWVERNNMVWQGTSFDPINTVTWSMLLLQEY 288
>ref|XP_006485451.1| PREDICTED: uncharacterized protein LOC102622884 [Citrus sinensis]
Length = 1160
Score = 38.1 bits (87), Expect(3) = 2e-08
Identities = 16/67 (23%), Positives = 33/67 (49%)
Frame = +2
Query: 170 QVKIEPEGTKDRYVWHWDSKGRFTVNSAYKQLSQMQVWKSDRPEPSGGSKHTERQWNKCW 349
Q+ + +D +WH+ G++TV S Y++ +++ P S+ ++ +WN W
Sbjct: 759 QIPLPRRLREDELIWHFGKSGQYTVKSGYQRALKIRF-----PAMPSSSESSKNEWNIIW 813
Query: 350 KLNIKNK 370
L + K
Sbjct: 814 SLALPKK 820
Score = 34.7 bits (78), Expect(3) = 2e-08
Identities = 43/211 (20%), Positives = 84/211 (39%), Gaps = 3/211 (1%)
Frame = +1
Query: 619 IQLSVYLVWWLWKTRNTWIFQNTRWKEIDVVNRALHDWQEFDIAAGTKIGGAKKETSAKE 798
+ L ++W W RN W+F+ R VV +A E + A ++ + + K+
Sbjct: 907 VDLFAVMLWAKWNARNQWLFKGKRENPQSVVAKA-----EAVMEAYKRVQPSADVSHGKQ 961
Query: 799 NMEARTVDTRSVGHYLVVLSAVKVGSNK--SGWGGWIRAEKEGITRAWATSRDEVYHPVE 972
A+ ++ + + S K +G G IR E +T A A + + V
Sbjct: 962 QKVAQLGWNPPQEGFVKINTDAATNSEKNLAGLGAVIRDENGQVT-ATAIKVSKFHGSVA 1020
Query: 973 -ATLVGIRQALCFAEKSKARTLTIQIENRSLVQSLNSRATFDSKCEKIAEDICLLSSLFD 1149
A + L A+ + + + ++ +++ +V +N+R S+ + +I L FD
Sbjct: 1021 YAEAEAMEWGLQVAKDAHVKDVIMESDSQEVVSLVNNRQGSRSEIYWVVLEIQKLKESFD 1080
Query: 1150 SVVFANQDHKNLSFCNRLVSLALSSDCDLDW 1242
V + + LV +AL + W
Sbjct: 1081 HVSCVYTHRSCNAIAHSLVKIALEKCETVVW 1111
Score = 32.7 bits (73), Expect(3) = 2e-08
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 387 LPTAMALNQRGRKMDPICTLCGNEQETTEHVFF*CERAQLVWKLS 521
LP+A L +R +P C LC E H C+ A+ VW+LS
Sbjct: 833 LPSAENLWKRKIVQEPTCQLCKMGIENVFHALVDCKAAKKVWRLS 877
>gb|EMJ08972.1| hypothetical protein PRUPE_ppa026368mg, partial [Prunus persica]
Length = 1060
Score = 36.6 bits (83), Expect(3) = 4e-08
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +2
Query: 170 QVKIEPEGTKDRYVWHWDSKGRFTVNSAYKQLSQMQVWKSDRPEPSGGSKHTERQWNKCW 349
Q+ + D +WH++ G ++V S Y+ L+ ++ K EPS + W K W
Sbjct: 692 QIPLASLAGHDCLIWHYERNGMYSVKSGYR-LAGLEKDKMS-GEPSARVDLNSKFWKKIW 749
Query: 350 KLNIKNK 370
L I NK
Sbjct: 750 ALKIPNK 756
Score = 35.8 bits (81), Expect(3) = 4e-08
Identities = 42/215 (19%), Positives = 79/215 (36%)
Frame = +1
Query: 625 LSVYLVWWLWKTRNTWIFQNTRWKEIDVVNRALHDWQEFDIAAGTKIGGAKKETSAKENM 804
L YL W LW RN++IF+ I +++R QEF A +++S + +
Sbjct: 845 LFAYLCWGLWNRRNSFIFEGKSETAIQLLSRMTKLAQEFSDANNILHTIHGRQSSPQAPL 904
Query: 805 EARTVDTRSVGHYLVVLSAVKVGSNKSGWGGWIRAEKEGITRAWATSRDEVYHPVEATLV 984
+ AVK G + G G +R A Y + L+
Sbjct: 905 QGWRPP-----------PAVKSGDSVRGVGVVVRNANGEFMAACVRRIHASYGARQTELM 953
Query: 985 GIRQALCFAEKSKARTLTIQIENRSLVQSLNSRATFDSKCEKIAEDICLLSSLFDSVVFA 1164
+ L FA ++++ + + S+ S ++ + E++ L + F +VV
Sbjct: 954 ATIEGLRFAIDMGFTDAILEMDAQDCLNSIFSTEEYNGIDGPLLEEVNYLLNNFRAVVCH 1013
Query: 1165 NQDHKNLSFCNRLVSLALSSDCDLDWCNQFSNWLV 1269
+ L A + + W + +WL+
Sbjct: 1014 WTPRCGNKVAHTLAQFAFHCNEFVTWIEEAPSWLL 1048
Score = 32.3 bits (72), Expect(3) = 4e-08
Identities = 20/69 (28%), Positives = 26/69 (37%)
Frame = +3
Query: 387 LPTAMALNQRGRKMDPICTLCGNEQETTEHVFF*CERAQLVWKLSPVQWFDTLHPTFTMK 566
LP L R PIC C + E+ H + CE A+ VW+ S
Sbjct: 769 LPCGQILFNRKIAPTPICPKCHRKAESVLHAVWLCEAAKEVWRNSA-------------- 814
Query: 567 KWWEGVCEI 593
W VCE+
Sbjct: 815 --WGNVCEV 821
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 42.7 bits (99), Expect(3) = 5e-08
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +3
Query: 378 NHSLPTAMALNQRGRKMDPICTLCGNEQETTEHVFF*CERAQLVWKLS 521
+ +L T L RG ++DPIC C E E+ H F C A + W LS
Sbjct: 1220 SQALATTERLTTRGMRIDPICPRCHRENESINHALFTCPFATMAWWLS 1267
Score = 35.4 bits (80), Expect(3) = 5e-08
Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 5/184 (2%)
Frame = +1
Query: 625 LSVYLVWWLWKTRNTWIFQNTRWKEIDVVNRA---LHDWQEFDIAAGTKIGGAKKETSAK 795
L V+L+W +WK RN +F R V A HDW + K + A+
Sbjct: 1304 LPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDW--LNATQSHKKTPSPTRQIAE 1361
Query: 796 ENMEARTVDTRSVG-HYLVVLSAVKVGSNKSGWGGWIRAEKEGITRAWATSR-DEVYHPV 969
+E R V ++ K+ + GGWI G +W + + +P+
Sbjct: 1362 NKIEWRNPPATYVKCNFDAGFDVQKLEAT----GGWIIRNHYGTPISWGSMKLAHTSNPL 1417
Query: 970 EATLVGIRQALCFAEKSKARTLTIQIENRSLVQSLNSRATFDSKCEKIAEDICLLSSLFD 1149
EA + AL + ++ + ++L+ +N +F S EDI ++ F
Sbjct: 1418 EAETKALLAALQQTWIRGYTQVFMEGDCQTLINLING-ISFHSSLANHLEDISFWANKFA 1476
Query: 1150 SVVF 1161
S+ F
Sbjct: 1477 SIQF 1480
Score = 26.2 bits (56), Expect(3) = 5e-08
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 200 DRYVWHWDSKGRFTVNSAYKQLSQMQVWKSDRPEPSGGSKHTE-RQWN 340
D+ +W++++ G +TV S Y L+ P GS + R WN
Sbjct: 1157 DKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWN 1204
>ref|XP_004298091.1| PREDICTED: uncharacterized protein LOC101303799 [Fragaria vesca
subsp. vesca]
Length = 351
Score = 44.3 bits (103), Expect(2) = 6e-08
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +3
Query: 387 LPTAMALNQRGRKMDPICTLCGNEQETTEHVFF*CERAQLVWKLSPVQWFDTLHPTFTMK 566
LPT L ++G + C CG ++E H+F C +WK S + + HP +K
Sbjct: 117 LPTKWVLKKKGVDLGVECPFCGGDKEDGLHIFKNCGVVNQLWKCSSLTSTPSTHPAMEIK 176
Query: 567 KWWEGVCEIRQLL 605
W +C++ +L+
Sbjct: 177 AW---LCDMVELM 186
Score = 40.8 bits (94), Expect(2) = 6e-08
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +2
Query: 170 QVKIEPEGTKDRYVWHWDSKGRFTVNSAY---KQLSQMQVWKSDRPEPSGGSKHTERQWN 340
++ + G +DR++WH+D KG ++V S Y +++ M+ S G W
Sbjct: 39 KIPLSLRGGEDRWMWHFDRKGLYSVRSGYHVARKVEHMETIASSSSSQGGWG----FIWK 94
Query: 341 KCWKLNIKNK 370
K WK+N+ K
Sbjct: 95 KVWKVNVPPK 104
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 42.4 bits (98), Expect(3) = 7e-08
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +3
Query: 378 NHSLPTAMALNQRGRKMDPICTLCGNEQETTEHVFF*CERAQLVWKLS 521
+ +L T L RG ++DP C C E E+ H F C A + W+LS
Sbjct: 1446 SQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLS 1493
Score = 35.4 bits (80), Expect(3) = 7e-08
Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 5/184 (2%)
Frame = +1
Query: 625 LSVYLVWWLWKTRNTWIFQNTRWKEIDVVNRA---LHDWQEFDIAAGTKIGGAKKETSAK 795
L V+L+W +WK RN +F R V A HDW + K + A+
Sbjct: 1530 LPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDW--LNATQSHKKTPSPTRQIAE 1587
Query: 796 ENMEARTVDTRSVG-HYLVVLSAVKVGSNKSGWGGWIRAEKEGITRAWATSR-DEVYHPV 969
+E R V ++ K+ + GGWI G +W + + +P+
Sbjct: 1588 NKIEWRNPPATYVKCNFDAGFDVQKLEAT----GGWIIRNHYGTPISWGSMKLAHTSNPL 1643
Query: 970 EATLVGIRQALCFAEKSKARTLTIQIENRSLVQSLNSRATFDSKCEKIAEDICLLSSLFD 1149
EA + AL + ++ + ++L+ +N +F S EDI ++ F
Sbjct: 1644 EAETKALLAALQQTWIRGYTQVFMEGDCQTLINLING-ISFHSSLANHLEDISFWANKFA 1702
Query: 1150 SVVF 1161
S+ F
Sbjct: 1703 SIQF 1706
Score = 26.2 bits (56), Expect(3) = 7e-08
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 200 DRYVWHWDSKGRFTVNSAYKQLSQMQVWKSDRPEPSGGSKHTE-RQWN 340
D+ +W++++ G +TV S Y L+ P GS + R WN
Sbjct: 1383 DKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWN 1430
>ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|6682231|gb|AAF23283.1|AC016661_8 putative non-LTR
reverse transcriptase [Arabidopsis thaliana]
gi|332641254|gb|AEE74775.1| RNase H domain-containing
protein [Arabidopsis thaliana]
Length = 484
Score = 42.4 bits (98), Expect(3) = 7e-08
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +3
Query: 378 NHSLPTAMALNQRGRKMDPICTLCGNEQETTEHVFF*CERAQLVWKLS 521
+ +L T L RG ++DP C C E E+ H F C A + W+LS
Sbjct: 180 SQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLS 227
Score = 35.4 bits (80), Expect(3) = 7e-08
Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 5/184 (2%)
Frame = +1
Query: 625 LSVYLVWWLWKTRNTWIFQNTRWKEIDVVNRA---LHDWQEFDIAAGTKIGGAKKETSAK 795
L V+L+W +WK RN +F R V A HDW + K + A+
Sbjct: 264 LPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDW--LNATQSHKKTPSPTRQIAE 321
Query: 796 ENMEARTVDTRSVG-HYLVVLSAVKVGSNKSGWGGWIRAEKEGITRAWATSR-DEVYHPV 969
+E R V ++ K+ + GGWI G +W + + +P+
Sbjct: 322 NKIEWRNPPATYVKCNFDAGFDVQKLEAT----GGWIIRNHYGTPISWGSMKLAHTSNPL 377
Query: 970 EATLVGIRQALCFAEKSKARTLTIQIENRSLVQSLNSRATFDSKCEKIAEDICLLSSLFD 1149
EA + AL + ++ + ++L+ +N +F S EDI ++ F
Sbjct: 378 EAETKALLAALQQTWIRGYTQVFMEGDCQTLINLING-ISFHSSLANHLEDISFWANKFA 436
Query: 1150 SVVF 1161
S+ F
Sbjct: 437 SIQF 440
Score = 26.2 bits (56), Expect(3) = 7e-08
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 200 DRYVWHWDSKGRFTVNSAYKQLSQMQVWKSDRPEPSGGSKHTE-RQWN 340
D+ +W++++ G +TV S Y L+ P GS + R WN
Sbjct: 117 DKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWN 164
>ref|NP_001060259.1| Os07g0613900 [Oryza sativa Japonica Group]
gi|113611795|dbj|BAF22173.1| Os07g0613900 [Oryza sativa
Japonica Group]
Length = 1453
Score = 46.2 bits (108), Expect(2) = 2e-07
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 200 DRYVWHWDSKGRFTVNSAYK--QLSQMQVWKSDRPEPSGGSKHTERQWNKCWKLNIKNK 370
D WH+D KG F+V SAYK + ++Q K S GS E W K WK+ + K
Sbjct: 1130 DMLAWHYDEKGLFSVKSAYKVQRDGELQRRKRGSAGLSNGSTEREMYWKKVWKMQLPGK 1188
Score = 37.4 bits (85), Expect(2) = 2e-07
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 405 LNQRGRKMDPICTLCGNEQETTEHVFF*CERAQLVWK 515
L QRG +D C +C E H+FF C++ + VW+
Sbjct: 1207 LQQRGMDLDSRCIICNRMNEDAGHLFFKCKKVKKVWQ 1243
>gb|EAZ40645.1| hypothetical protein OsJ_25114 [Oryza sativa Japonica Group]
Length = 560
Score = 46.2 bits (108), Expect(2) = 2e-07
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 200 DRYVWHWDSKGRFTVNSAYK--QLSQMQVWKSDRPEPSGGSKHTERQWNKCWKLNIKNK 370
D WH+D KG F+V SAYK + ++Q K S GS E W K WK+ + K
Sbjct: 237 DMLAWHYDEKGLFSVKSAYKVQRDGELQRRKRGSAGLSNGSTEREMYWKKVWKMQLPGK 295
Score = 37.4 bits (85), Expect(2) = 2e-07
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 405 LNQRGRKMDPICTLCGNEQETTEHVFF*CERAQLVWK 515
L QRG +D C +C E H+FF C++ + VW+
Sbjct: 314 LQQRGMDLDSRCIICNRMNEDAGHLFFKCKKVKKVWQ 350
>gb|ABK28206.1| unknown [Arabidopsis thaliana]
Length = 293
Score = 45.8 bits (107), Expect(2) = 2e-07
Identities = 41/179 (22%), Positives = 83/179 (46%), Gaps = 3/179 (1%)
Frame = +1
Query: 634 YLVWWLWKTRNTWIFQNTRWKEIDVVNRALHDWQEFDIAAGTKIGGAKKETSAKENMEAR 813
+L+W LWK+RN +F+ + +V+ RA+ D++E+ + ++ G + N+
Sbjct: 79 WLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEW--STRRELEGKASGPQVERNL--- 133
Query: 814 TVDTRSVGHYLVVL---SAVKVGSNKSGWGGWIRAEKEGITRAWATSRDEVYHPVEATLV 984
+V ++ + V + ++ + + G G +R E G+ A + + +EA L
Sbjct: 134 SVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELE 193
Query: 985 GIRQALCFAEKSKARTLTIQIENRSLVQSLNSRATFDSKCEKIAEDICLLSSLFDSVVF 1161
+R A+ + + + + + ++LV LNS F + EDI L F+ V F
Sbjct: 194 ALRWAVLTMSRFNYKRIIFESDAQALVNLLNS-DDFWPTLQPALEDIQQLLHHFEEVKF 251
Score = 37.4 bits (85), Expect(2) = 2e-07
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Frame = +3
Query: 438 CTLCGNEQETTEHVFF*CERAQLVWKLSPV------QWFDTLH 548
C C + +ET H+ F C A+LVW +SP+ +W D+L+
Sbjct: 12 CVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLY 54
>ref|NP_180979.1| polynucleotidyl transferase, ribonuclease H-like superfamily protein
[Arabidopsis thaliana] gi|3337363|gb|AAC27408.1| putative
non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|91805481|gb|ABE65469.1| hypothetical protein
At2g34320 [Arabidopsis thaliana]
gi|330253864|gb|AEC08958.1| polynucleotidyl transferase,
ribonuclease H-like superfamily protein [Arabidopsis
thaliana]
Length = 292
Score = 45.8 bits (107), Expect(2) = 2e-07
Identities = 41/179 (22%), Positives = 83/179 (46%), Gaps = 3/179 (1%)
Frame = +1
Query: 634 YLVWWLWKTRNTWIFQNTRWKEIDVVNRALHDWQEFDIAAGTKIGGAKKETSAKENMEAR 813
+L+W LWK+RN +F+ + +V+ RA+ D++E+ + ++ G + N+
Sbjct: 79 WLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEW--STRRELEGKASGPQVERNL--- 133
Query: 814 TVDTRSVGHYLVVL---SAVKVGSNKSGWGGWIRAEKEGITRAWATSRDEVYHPVEATLV 984
+V ++ + V + ++ + + G G +R E G+ A + + +EA L
Sbjct: 134 SVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELE 193
Query: 985 GIRQALCFAEKSKARTLTIQIENRSLVQSLNSRATFDSKCEKIAEDICLLSSLFDSVVF 1161
+R A+ + + + + + ++LV LNS F + EDI L F+ V F
Sbjct: 194 ALRWAVLTMSRFNYKRIIFESDAQALVNLLNS-DDFWPTLQPALEDIQQLLHHFEEVKF 251
Score = 37.4 bits (85), Expect(2) = 2e-07
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Frame = +3
Query: 438 CTLCGNEQETTEHVFF*CERAQLVWKLSPV------QWFDTLH 548
C C + +ET H+ F C A+LVW +SP+ +W D+L+
Sbjct: 12 CVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLY 54
>dbj|BAB08714.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1197
Score = 43.1 bits (100), Expect(2) = 3e-07
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = +3
Query: 384 SLPTAMALNQRGRKMDPICTLCGNEQETTEHVFF*CERAQLVWKLSPVQWFD 539
+LP L R DP+C CG E ET+ H F C Q VW+L+P++ D
Sbjct: 893 ALPVGSQLAIRIPSFDPVCCRCG-ELETSSHALFNCMFVQRVWRLAPLEGID 943
Score = 39.7 bits (91), Expect(2) = 3e-07
Identities = 38/174 (21%), Positives = 74/174 (42%), Gaps = 1/174 (0%)
Frame = +1
Query: 634 YLVWWLWKTRNTWIFQNTRWKEIDVVNRALHDWQEFDIAAGTKIGGAKKETSAKENMEAR 813
++ W LW TRN +F N + E++ +N+A+ D +E+ A + ++ + + + A
Sbjct: 977 WICWTLWITRNQKVFSNILFSELETINKAIQDAKEWQFA---QEPNSRFQVRSSMGLRAE 1033
Query: 814 TVDTRSVGHYLVVLSAVKVGSNKSGWGGWIRAEKEGI-TRAWATSRDEVYHPVEATLVGI 990
S + +V S GW + GI + + + V P+ A + +
Sbjct: 1034 VFSLNSTVIHTDAAWSVLTCSAGLGW----TLKSPGIPLKKNSALSEHVPSPLVAEALVV 1089
Query: 991 RQALCFAEKSKARTLTIQIENRSLVQSLNSRATFDSKCEKIAEDICLLSSLFDS 1152
AL A + ++ + + L ++ S+ S+ I +DI SS F S
Sbjct: 1090 HSALWSAHNLGLHDVILKSDCQVLTMAIISQFPL-SEIHGILQDITSSSSSFSS 1142