BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00009715
         (416 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   189   3e-46
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     187   1e-45
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal...   180   2e-43
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                             177   1e-42
emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana]        174   1e-41
pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis t...   173   2e-41
gb|AFB73912.1| polyprotein [Citrus sinensis]                          172   4e-41
pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrot...   172   5e-41
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  171   1e-40
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        171   1e-40
emb|CAA31653.1| polyprotein [Arabidopsis thaliana]                    170   2e-40
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...   170   2e-40
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              169   3e-40
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              169   3e-40
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              169   3e-40
gb|AFB73911.1| polyprotein [Citrus sinensis]                          169   5e-40
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   169   5e-40
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]         168   8e-40
emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group]           167   1e-39
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi...   166   2e-39

>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  189 bits (480), Expect = 3e-46
 Identities = 91/140 (65%), Positives = 112/140 (80%), Gaps = 3/140 (2%)
 Frame = +2

Query: 2    MHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKN---ENDSVRYKARFVAKGFTQKEG 172
            M +EM SL  N TW LVP PE    VDCKWLFK+K+    ++  +YK+R VAKGF+QKEG
Sbjct: 933  MDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISXDEPPKYKSRLVAKGFSQKEG 992

Query: 173  IDYTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFVDNK 352
            IDY E+F+PVVK  ++R++LA+ + FN EL QLDVKTAFLHG+L E+IYM+QPEGFVD++
Sbjct: 993  IDYNEVFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQPEGFVDSE 1052

Query: 353  KSDFVCLLKKSLYGLKQSPR 412
            KSD VC LKKSLYGLKQSPR
Sbjct: 1053 KSDHVCFLKKSLYGLKQSPR 1072


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  187 bits (476), Expect = 1e-45
 Identities = 88/140 (62%), Positives = 113/140 (80%), Gaps = 3/140 (2%)
 Frame = +2

Query: 2    MHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVK---NENDSVRYKARFVAKGFTQKEG 172
            M EEM SLH N+ W LVPKP+   LV CKW+F+ K   +E+D++ YKAR VAKG++QKEG
Sbjct: 801  MTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHEDDAITYKARLVAKGYSQKEG 860

Query: 173  IDYTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFVDNK 352
            +DY EIF+PVVK T++R++L++ AQ++ E++Q+DVKTAFLHGDL E IYM QPEGFV+  
Sbjct: 861  VDYDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETG 920

Query: 353  KSDFVCLLKKSLYGLKQSPR 412
            K + VC LKKSLYGLKQSPR
Sbjct: 921  KENLVCRLKKSLYGLKQSPR 940


>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
          Length = 855

 Score =  180 bits (456), Expect = 2e-43
 Identities = 85/139 (61%), Positives = 110/139 (79%), Gaps = 3/139 (2%)
 Frame = +2

Query: 5   HEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNEN---DSVRYKARFVAKGFTQKEGI 175
           HEEM+SL  N TW LV KP N  ++ C+WLFK+K+     + VR+KAR VAKG+TQ+EG+
Sbjct: 537 HEEMDSLIKNGTWDLVDKPTNRKIIGCRWLFKLKSGIPGVEPVRFKARLVAKGYTQREGV 596

Query: 176 DYTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFVDNKK 355
           DY EIFAPVVK T++R+++++    + EL+Q+DVKTAFLHGDL E++YM QPEGF+ +K 
Sbjct: 597 DYQEIFAPVVKHTSIRVLMSVVVDQDMELEQMDVKTAFLHGDLEEELYMEQPEGFITDKT 656

Query: 356 SDFVCLLKKSLYGLKQSPR 412
            D VCLLKKSLYGLKQSPR
Sbjct: 657 KDKVCLLKKSLYGLKQSPR 675


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  177 bits (450), Expect = 1e-42
 Identities = 85/140 (60%), Positives = 104/140 (74%), Gaps = 2/140 (1%)
 Frame = +2

Query: 2    MHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNENDSV--RYKARFVAKGFTQKEGI 175
            M EE+ +LH NNTW LVP P+    +  KW+FK+K   D    RY+AR V KG+ QKEGI
Sbjct: 800  MQEEIEALHKNNTWDLVPLPQGRKPIGNKWVFKIKRNGDDQVERYRARLVVKGYAQKEGI 859

Query: 176  DYTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFVDNKK 355
            D+ EIF+PVV+ TTVR++LA+ A FN  L+QLDVKTAFLHGDL E+IYM QPEGF D + 
Sbjct: 860  DFNEIFSPVVRLTTVRVVLAMCATFNLHLEQLDVKTAFLHGDLEEEIYMLQPEGFEDKEN 919

Query: 356  SDFVCLLKKSLYGLKQSPRC 415
             + VC L KSLYGLKQ+PRC
Sbjct: 920  QNLVCRLNKSLYGLKQAPRC 939


>emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana]
          Length = 494

 Score =  174 bits (440), Expect = 1e-41
 Identities = 81/139 (58%), Positives = 109/139 (78%), Gaps = 3/139 (2%)
 Frame = +2

Query: 5   HEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNEN---DSVRYKARFVAKGFTQKEGI 175
           HEEM+SL  N TW+LV KP++  ++ C+WLFK+K+     + VRYKAR VAKG+TQ+EG+
Sbjct: 91  HEEMDSLIKNGTWVLVDKPKDRKIIGCRWLFKMKSGIPGVEPVRYKARLVAKGYTQREGV 150

Query: 176 DYTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFVDNKK 355
           DY EIFAPV K T++RI++++    + EL+Q+DVKTAFLHG+L E++YM QP+GF+    
Sbjct: 151 DYQEIFAPVAKHTSIRILMSVVVDQDLELEQMDVKTAFLHGELEEELYMEQPDGFISEDG 210

Query: 356 SDFVCLLKKSLYGLKQSPR 412
            + VCLLKKSLYGLKQSPR
Sbjct: 211 ENKVCLLKKSLYGLKQSPR 229


>pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana
           retrotransposon Ta1 (fragment) gi|16356|emb|CAA37917.1|
           reverse transcriptase [Arabidopsis thaliana]
          Length = 587

 Score =  173 bits (439), Expect = 2e-41
 Identities = 82/139 (58%), Positives = 108/139 (77%), Gaps = 3/139 (2%)
 Frame = +2

Query: 5   HEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNEN---DSVRYKARFVAKGFTQKEGI 175
           HEEM+SL  N TW+LV KP++  ++ C+WLFK+K+     + VRYKAR VAKG+TQ+EG+
Sbjct: 90  HEEMDSLIKNGTWVLVDKPQDRKIIGCRWLFKMKSGIPGVEPVRYKARLVAKGYTQREGV 149

Query: 176 DYTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFVDNKK 355
           DY EIFAPVVK T +RI++++    + EL+Q+DVKTAFLHG+L E++YM QPEGF+    
Sbjct: 150 DYQEIFAPVVKHTFIRILMSVVVDQDLELEQMDVKTAFLHGELEEELYMEQPEGFISEDG 209

Query: 356 SDFVCLLKKSLYGLKQSPR 412
            + VCLLKK LYGLKQSPR
Sbjct: 210 KNKVCLLKKLLYGLKQSPR 228


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  172 bits (436), Expect = 4e-41
 Identities = 84/140 (60%), Positives = 105/140 (75%), Gaps = 2/140 (1%)
 Frame = +2

Query: 2    MHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNE-NDSV-RYKARFVAKGFTQKEGI 175
            M EE+ +LH N TW LVP P     +  KW++K+K + ND V RY+AR V KG+ QKEGI
Sbjct: 811  MQEEIEALHKNKTWELVPLPHGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGI 870

Query: 176  DYTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFVDNKK 355
            D+ EIF+PVV+ TTVRI+LA+ A F+  L+QLDVKTAFLHG+L E+IYM QPEGF +  K
Sbjct: 871  DFNEIFSPVVRLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIYMLQPEGFAETGK 930

Query: 356  SDFVCLLKKSLYGLKQSPRC 415
             + VC L KSLYGLKQ+PRC
Sbjct: 931  ENLVCRLNKSLYGLKQAPRC 950


>pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2
            (strain Landsberg) (fragment) gi|16384|emb|CAA37924.1|
            unnamed protein product [Arabidopsis thaliana]
          Length = 1084

 Score =  172 bits (435), Expect = 5e-41
 Identities = 80/139 (57%), Positives = 107/139 (76%), Gaps = 3/139 (2%)
 Frame = +2

Query: 5    HEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNEN---DSVRYKARFVAKGFTQKEGI 175
            HEE NSL  N TW+LV KP++  ++ C+WLFK+K+     + VRYKAR VAKG+TQ+EG+
Sbjct: 766  HEEKNSLIKNGTWVLVDKPKDRKIIGCRWLFKMKSGIPGVEPVRYKARLVAKGYTQREGV 825

Query: 176  DYTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFVDNKK 355
            DY EIFAPV K T++RI++++    + EL+Q+DVKT FLHG+L E++YM QP+GF+    
Sbjct: 826  DYQEIFAPVAKHTSIRILMSVVVDQDLELEQMDVKTTFLHGELEEELYMEQPDGFISEDG 885

Query: 356  SDFVCLLKKSLYGLKQSPR 412
             + VCLLKKSLYGLKQSPR
Sbjct: 886  ENKVCLLKKSLYGLKQSPR 904


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  171 bits (432), Expect = 1e-40
 Identities = 83/140 (59%), Positives = 106/140 (75%), Gaps = 2/140 (1%)
 Frame = +2

Query: 2    MHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNE-NDSV-RYKARFVAKGFTQKEGI 175
            M EE+ +LH NNTW LV  P+    +  KW+FK+K + ND V RY+AR V KG+ QKEGI
Sbjct: 807  MQEEIEALHRNNTWELVELPKGRKAIGNKWVFKIKRDGNDQVERYRARLVVKGYAQKEGI 866

Query: 176  DYTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFVDNKK 355
            D+ EIF+PVV+ TT+RI+LA+ A F   L+QLDVKTAFLHG+L E+IYM QPEGF + ++
Sbjct: 867  DFNEIFSPVVRLTTIRIVLAMCAAFELHLEQLDVKTAFLHGELEEEIYMLQPEGFEEKER 926

Query: 356  SDFVCLLKKSLYGLKQSPRC 415
             + VC L KSLYGLKQ+PRC
Sbjct: 927  ENLVCRLTKSLYGLKQAPRC 946


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  171 bits (432), Expect = 1e-40
 Identities = 83/141 (58%), Positives = 107/141 (75%), Gaps = 4/141 (2%)
 Frame = +2

Query: 2    MHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNEN----DSVRYKARFVAKGFTQKE 169
            M +EM SL  N TW L+P P N  L++CKW+FK +NE     +  +YKAR VA+GFTQ+E
Sbjct: 833  MQDEMESLQRNQTWTLIPNPGNKRLINCKWIFK-RNEGIPDVEPPKYKARLVARGFTQRE 891

Query: 170  GIDYTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFVDN 349
            G+D+ EIF+PVVK +++RI+LA+ A  + EL+Q+DVKTAFLHG+L E+I M QPEGF   
Sbjct: 892  GVDFNEIFSPVVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNLEEQILMAQPEGFECK 951

Query: 350  KKSDFVCLLKKSLYGLKQSPR 412
             K D+VCLL KSLYGLKQSPR
Sbjct: 952  DKEDYVCLLHKSLYGLKQSPR 972


>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
          Length = 1291

 Score =  170 bits (430), Expect = 2e-40
 Identities = 80/139 (57%), Positives = 108/139 (77%), Gaps = 3/139 (2%)
 Frame = +2

Query: 5    HEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNEN---DSVRYKARFVAKGFTQKEGI 175
            HEEM+SL  N TW+LV KP+N  ++ C+WLFK+K+ +   + VRYKA+ VAKG+T +EG+
Sbjct: 866  HEEMDSLIKNGTWVLVDKPQNRKIIGCRWLFKLKSGSPGVEPVRYKAQLVAKGYTHREGV 925

Query: 176  DYTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFVDNKK 355
            DY EIFA VVK T++RI++++    + EL+Q+DVKTAFLHG+L E++YM QPEG +    
Sbjct: 926  DYQEIFALVVKHTSIRILMSVVVDQDLELEQMDVKTAFLHGELEEELYMEQPEGCISEDG 985

Query: 356  SDFVCLLKKSLYGLKQSPR 412
             + VCLLKKSLYGLKQSPR
Sbjct: 986  ENKVCLLKKSLYGLKQSPR 1004


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  170 bits (430), Expect = 2e-40
 Identities = 81/139 (58%), Positives = 106/139 (76%), Gaps = 3/139 (2%)
 Frame = +2

Query: 5    HEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNENDSV---RYKARFVAKGFTQKEGI 175
            H+EM+SL  N TW LV KP++  ++ C+WLFK+K+    V   R+KAR VAKG+TQ+EG+
Sbjct: 859  HDEMDSLMKNGTWDLVDKPKDRKIIGCRWLFKLKSGIPGVEPTRFKARLVAKGYTQREGV 918

Query: 176  DYTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFVDNKK 355
            DY EIFAPVVK  ++RI+++L    + EL+Q+DVKT FLHGDL E++YM QPEGFV +  
Sbjct: 919  DYQEIFAPVVKHVSIRILMSLVVDKDLELEQMDVKTTFLHGDLEEELYMEQPEGFVSDSS 978

Query: 356  SDFVCLLKKSLYGLKQSPR 412
             + VC LKKSLYGLKQSPR
Sbjct: 979  ENKVCRLKKSLYGLKQSPR 997


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  169 bits (429), Expect = 3e-40
 Identities = 82/140 (58%), Positives = 105/140 (75%), Gaps = 2/140 (1%)
 Frame = +2

Query: 2    MHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNE-NDSV-RYKARFVAKGFTQKEGI 175
            MHEEM +LH N TW LV  P+    +  KW++K+K + ND V RY+AR V KG+ QKEGI
Sbjct: 807  MHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGI 866

Query: 176  DYTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFVDNKK 355
            D+ EIF+PVV+ TT+R++LA+ A  +  L+QLDVKTAFLHG+L E+IYM QPEGF +  K
Sbjct: 867  DFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGK 926

Query: 356  SDFVCLLKKSLYGLKQSPRC 415
             + VC L KSLYGLKQ+PRC
Sbjct: 927  ENLVCRLTKSLYGLKQAPRC 946


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  169 bits (429), Expect = 3e-40
 Identities = 82/140 (58%), Positives = 105/140 (75%), Gaps = 2/140 (1%)
 Frame = +2

Query: 2    MHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNE-NDSV-RYKARFVAKGFTQKEGI 175
            MHEEM +LH N TW LV  P+    +  KW++K+K + ND V RY+AR V KG+ QKEGI
Sbjct: 807  MHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGI 866

Query: 176  DYTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFVDNKK 355
            D+ EIF+PVV+ TT+R++LA+ A  +  L+QLDVKTAFLHG+L E+IYM QPEGF +  K
Sbjct: 867  DFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGK 926

Query: 356  SDFVCLLKKSLYGLKQSPRC 415
             + VC L KSLYGLKQ+PRC
Sbjct: 927  ENLVCRLTKSLYGLKQAPRC 946


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  169 bits (429), Expect = 3e-40
 Identities = 82/140 (58%), Positives = 105/140 (75%), Gaps = 2/140 (1%)
 Frame = +2

Query: 2    MHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNE-NDSV-RYKARFVAKGFTQKEGI 175
            MHEEM +LH N TW LV  P+    +  KW++K+K + ND V RY+AR V KG+ QKEGI
Sbjct: 807  MHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGI 866

Query: 176  DYTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFVDNKK 355
            D+ EIF+PVV+ TT+R++LA+ A  +  L+QLDVKTAFLHG+L E+IYM QPEGF +  K
Sbjct: 867  DFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGK 926

Query: 356  SDFVCLLKKSLYGLKQSPRC 415
             + VC L KSLYGLKQ+PRC
Sbjct: 927  ENLVCRLTKSLYGLKQAPRC 946


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  169 bits (427), Expect = 5e-40
 Identities = 83/139 (59%), Positives = 104/139 (74%), Gaps = 2/139 (1%)
 Frame = +2

Query: 2    MHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNE-NDSV-RYKARFVAKGFTQKEGI 175
            M EE+ +LH N TW LVP P     +  KW++K+K + ND V RY+AR V KG+ QKEGI
Sbjct: 811  MQEEIEALHKNKTWELVPLPRGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGI 870

Query: 176  DYTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFVDNKK 355
            D+ EIF+PVV+ TTVRI+LA+ A F+  L+QLDVKTAFLHG+L E+IYM QPEGF +  K
Sbjct: 871  DFNEIFSPVVRLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIYMLQPEGFAETGK 930

Query: 356  SDFVCLLKKSLYGLKQSPR 412
             + VC L KSLYGLKQ+PR
Sbjct: 931  ENLVCRLNKSLYGLKQAPR 949


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  169 bits (427), Expect = 5e-40
 Identities = 82/140 (58%), Positives = 105/140 (75%), Gaps = 3/140 (2%)
 Frame = +2

Query: 2    MHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVK---NENDSVRYKARFVAKGFTQKEG 172
            M +EM SLH N TW LV +P    ++ CKW+FK K   +  + V+YKAR VA+GF Q+EG
Sbjct: 810  MGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREG 869

Query: 173  IDYTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFVDNK 352
            +DY EIF+PVV+ T++R++LA+ A  N EL+QLDVKTAFLHG+L E+IYM QP+GF    
Sbjct: 870  VDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPG 929

Query: 353  KSDFVCLLKKSLYGLKQSPR 412
            K + VC LKKSLYGLKQSPR
Sbjct: 930  KENHVCKLKKSLYGLKQSPR 949


>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
          Length = 1415

 Score =  168 bits (425), Expect = 8e-40
 Identities = 81/139 (58%), Positives = 110/139 (79%), Gaps = 2/139 (1%)
 Frame = +2

Query: 2    MHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNENDSV--RYKARFVAKGFTQKEGI 175
            M EEMNSL+VN+T+ LV  P+N   +  +W+++VK+E  +   R+KAR V KGF+QK+GI
Sbjct: 828  MQEEMNSLYVNDTFELVKAPKNRKALKNRWVYRVKHEEGTSVPRFKARLVVKGFSQKKGI 887

Query: 176  DYTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFVDNKK 355
            D+ EIF+PVVKF+++R++L L A+ + E++Q+DVKTAFLHGDL E+IYM QPEGF    K
Sbjct: 888  DFDEIFSPVVKFSSIRVVLGLAARLDIEIEQMDVKTAFLHGDLDEEIYMEQPEGFKVKGK 947

Query: 356  SDFVCLLKKSLYGLKQSPR 412
             D+VC LKKSLYGLKQ+PR
Sbjct: 948  EDYVCRLKKSLYGLKQAPR 966


>emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group]
          Length = 1087

 Score =  167 bits (424), Expect = 1e-39
 Identities = 78/139 (56%), Positives = 102/139 (73%), Gaps = 2/139 (1%)
 Frame = +2

Query: 2    MHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNENDSV--RYKARFVAKGFTQKEGI 175
            M EE N+L  NNTW LVP P    ++DCKW+FK+K ++D    RYKAR VAKGF Q+ GI
Sbjct: 654  MDEEYNALIKNNTWHLVPAPIGKYIIDCKWVFKIKRKSDGTIDRYKARLVAKGFKQRYGI 713

Query: 176  DYTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFVDNKK 355
            DY + F+PVVK +T+R++L+L     W ++QLDVK AFLHG L E++YM+QP G+VD   
Sbjct: 714  DYEDTFSPVVKISTIRLVLSLAVSKGWSIRQLDVKNAFLHGILEEEVYMKQPPGYVDKSS 773

Query: 356  SDFVCLLKKSLYGLKQSPR 412
            S +VC L K+LYGLKQ+PR
Sbjct: 774  SYYVCKLDKALYGLKQAPR 792


>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score =  166 bits (421), Expect = 2e-39
 Identities = 82/138 (59%), Positives = 104/138 (75%), Gaps = 3/138 (2%)
 Frame = +2

Query: 8    EEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNENDSV---RYKARFVAKGFTQKEGID 178
            EEM+S+  N+TW ++ KPE   ++ CKW+FK K     V   RYKAR VAKGF+Q+EGID
Sbjct: 844  EEMDSMKKNDTWDVIDKPEGKRVIGCKWIFKRKAGIPGVEPPRYKARLVAKGFSQREGID 903

Query: 179  YTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFVDNKKS 358
            Y EIF+PVVK  ++R +L++  QF+ EL+QLDVKTAFLHG+L E I M QPEG+ D   +
Sbjct: 904  YQEIFSPVVKHVSIRYLLSIVVQFDMELEQLDVKTAFLHGNLDEYILMSQPEGYEDEDST 963

Query: 359  DFVCLLKKSLYGLKQSPR 412
            + VCLLKKSLYGLKQSPR
Sbjct: 964  EKVCLLKKSLYGLKQSPR 981