BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00009624
         (3966 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1783   0.0  
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    1781   0.0  
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1778   0.0  
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]    1778   0.0  
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]  1778   0.0  
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...  1770   0.0  
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...  1757   0.0  
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1742   0.0  
ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco...  1727   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...  1727   0.0  
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...  1716   0.0  
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...  1712   0.0  
gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]      1696   0.0  
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1657   0.0  
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1657   0.0  
gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus pe...  1657   0.0  
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu...  1654   0.0  
gb|EPS62146.1| hypothetical protein M569_12646, partial [Genlise...  1648   0.0  
ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1625   0.0  
ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1625   0.0  

>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1783 bits (4618), Expect = 0.0
 Identities = 868/1172 (74%), Positives = 987/1172 (84%)
 Frame = +3

Query: 3    EMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEIDTESIQRKDDYEKVEPHAFVHFAVKH 182
            +ML +Y E  +G VWRCRLK SSTPPDSYP Y+ID E +QR ++YEKV PHAFVHFA   
Sbjct: 27   KMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDIDAEKVQRMNNYEKVVPHAFVHFASSE 86

Query: 183  SATSALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREE 362
            SA  AL AAG  ELIL  KPL VSLGPENP+ LN++RRTT+P+K SDV VE+GV+ S+++
Sbjct: 87   SAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRRRTTMPFKFSDVSVEMGVLVSKDD 146

Query: 363  FVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEI 542
            FVVGWRGPRTGVDF VDPFNG CK+ FTKDTAFSF+GE + A+IKCNF+IEF+ REI EI
Sbjct: 147  FVVGWRGPRTGVDFFVDPFNGTCKILFTKDTAFSFRGEARHAIIKCNFKIEFMVREINEI 206

Query: 543  KHYRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRC 722
            K  +DF SL++LLQLASSPL++YRTADDDI+ESV FDLLDDDD WIRTTD T SGAIGRC
Sbjct: 207  KKCKDFTSLVILLQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIRTTDITGSGAIGRC 266

Query: 723  NTYRISVRPRYGPYLTKALEYLRKRRVPVIYESPRHRLLVQDEPDFGVPMLDPFFCIQYK 902
            NTYRIS+RPR GP   KA+ Y    RVP++    R  L V+DEPDFGV M DPFFC Q  
Sbjct: 267  NTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRKMLRVKDEPDFGVSMSDPFFCFQ-N 325

Query: 903  EGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFK 1082
            EGISFKV+FLVNAV+HKGI+NQHQM+ +FF LLRSR EEVN+ ALKHM SYK PV DA +
Sbjct: 326  EGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSRQEEVNSAALKHMFSYKWPVNDAIQ 385

Query: 1083 ALELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIAD 1262
             L  +QKWLL NPKLL+R  E++DIVEVRRL+ITP KAYCLPP VELSNRVLRNY+++AD
Sbjct: 386  KLVGIQKWLLKNPKLLDRTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVAD 445

Query: 1263 RFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRK 1442
            RFLRVTFMDE M  LN+NVLTYY   + R ITSNSNPQRT +F+RVK IL+ GF+LCGRK
Sbjct: 446  RFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRK 505

Query: 1443 YSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATV 1622
            YSFLAFS+NQLRDRSAWFFAED    V  I +WMG+F+NRN+AKCAARMGQCFSSTYATV
Sbjct: 506  YSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATV 565

Query: 1623 EVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGV 1802
            EVPS +VNS+LPDIERNGYVFSDGIGM+S  LA+EVAEKL +S +PP AYQIRYAG KGV
Sbjct: 566  EVPSREVNSELPDIERNGYVFSDGIGMISADLAIEVAEKLHLSVNPPSAYQIRYAGCKGV 625

Query: 1803 IARWPNIKDGTHLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIF 1982
            +A WP   DG  L LR SM+KF+SNHTILEICSWTRFQPGFLNRQIVTLLS+L+V+DGIF
Sbjct: 626  VACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIF 685

Query: 1983 WRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIR 2162
            W MQ+ M+S LD+ML D+D+AFDV+T SC + G+TAAIMLSAGFKPQ+EPHLRGML+SIR
Sbjct: 686  WEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIR 745

Query: 2163 AAQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENE 2342
            A+QLGDLR KARIFVPSGRWLMGCLDELG LE GQCFIQVS PSLE  FVKHG +FS+ +
Sbjct: 746  ASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSDIK 805

Query: 2343 KKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDL 2522
            + LQVVKGLV IAKNPCLHPGDVRILEAVD P L HL+DCLVFPQKGDRPH+NEASGSDL
Sbjct: 806  QNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDL 865

Query: 2523 DGELYFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTIC 2702
            DG+LYFVTWDENLIPPSK+SWIPM+Y   E ++L R V H DII+FF+KNMV ESLG IC
Sbjct: 866  DGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEIC 925

Query: 2703 NAHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQ 2882
            NAHVVHADLSE+GALDEKC+KLAELAA+AVDFPKTGK+VTMP +LKPK+YPDFMGKEE Q
Sbjct: 926  NAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQ 985

Query: 2883 TYHSNKILGKLYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCS 3062
            +Y S KILGKLYR++KD  D   E S+      ++I YD  LEI GS +FI DAWN KCS
Sbjct: 986  SYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDSTLEILGSTAFIDDAWNSKCS 1045

Query: 3063 YDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFES 3242
            YDGQL GLLGQYKVNREEE+VTGHIWSMPKYS+KKQGELKERLKHAY+TLRKEFR VFE 
Sbjct: 1046 YDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLRKEFRNVFER 1105

Query: 3243 MDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAAD 3422
            MDP+FD L DDEKN MYE+KASAWYQVTYH  W+ +S ELQ+ D    TVMLSFAWIAAD
Sbjct: 1106 MDPDFDLLPDDEKNDMYERKASAWYQVTYHPHWVARSLELQLPDAVSNTVMLSFAWIAAD 1165

Query: 3423 YLARIKIRRRRTENDISTKPIDSLGRYLADKI 3518
            YLARIKIR RR +   STKPI+SLGRYL D I
Sbjct: 1166 YLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1781 bits (4612), Expect = 0.0
 Identities = 866/1172 (73%), Positives = 988/1172 (84%)
 Frame = +3

Query: 3    EMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEIDTESIQRKDDYEKVEPHAFVHFAVKH 182
            +ML +Y E  +G VWRCRLK SSTPPDSYP Y+ID E +QR ++YEKV PHAFVHFA   
Sbjct: 27   KMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDIDAEKVQRMNNYEKVVPHAFVHFASSE 86

Query: 183  SATSALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREE 362
            SA  AL AAG  ELIL  KPL VSLGPENP+ LN++RRTT+P+K SDV VE+GV+ S+++
Sbjct: 87   SAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRRRTTMPFKFSDVSVEMGVLVSKDD 146

Query: 363  FVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEI 542
            FVVGWRGPRTGVDFLVDPFNG CK+ FTKDTAFSF+GE + A+IKCNF+IEFL REI EI
Sbjct: 147  FVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFSFRGEARHAIIKCNFKIEFLVREINEI 206

Query: 543  KHYRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRC 722
            K  +DF SL++L QLASSPL++YRTADDDI+ESV FDLLDDDD WIRTTD T SGAIGRC
Sbjct: 207  KKCKDFTSLVILFQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIRTTDITGSGAIGRC 266

Query: 723  NTYRISVRPRYGPYLTKALEYLRKRRVPVIYESPRHRLLVQDEPDFGVPMLDPFFCIQYK 902
            NTYRIS+RPR GP   KA+ Y   RRVP++    R  L V+DEPDFGV M DPFFC Q  
Sbjct: 267  NTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCNRKMLRVKDEPDFGVSMSDPFFCFQ-N 325

Query: 903  EGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFK 1082
            EGISF+VLFLVNAV+HKGI+NQHQM+ +FF LLRS  EEVN+ ALKHM SYK PV DA +
Sbjct: 326  EGISFRVLFLVNAVLHKGIVNQHQMANEFFYLLRSHQEEVNSAALKHMFSYKWPVNDAIQ 385

Query: 1083 ALELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIAD 1262
             L  +QKWLL NPKLL+R  E++DIVEVRRL+ITP KAYCLPP VELSNRVLRNY+++AD
Sbjct: 386  KLAGIQKWLLKNPKLLDRTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVAD 445

Query: 1263 RFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRK 1442
            RFLRVTFMDE M  LN+NVLTYY   + R ITSNSNPQRT +F+RVK IL+ GF+LCGRK
Sbjct: 446  RFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRK 505

Query: 1443 YSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATV 1622
            YSFLAFS+NQLRDRSAWFFAED    V  I +WMG+F+NRN+AKCAARMGQCFSSTYATV
Sbjct: 506  YSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATV 565

Query: 1623 EVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGV 1802
            EVPS++VNS+LPDIERNGYVFSDGIGM+S  LA+EVAEKL +S +PP AYQIRYAG KGV
Sbjct: 566  EVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEVAEKLHLSVNPPSAYQIRYAGCKGV 625

Query: 1803 IARWPNIKDGTHLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIF 1982
            +A WP   DG  L LR SM+KF+SNHTILEICSWTRFQPGFLNRQIVTLLS+L+V+DGIF
Sbjct: 626  VACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIF 685

Query: 1983 WRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIR 2162
            W MQ+ M+S LD+ML D+D+AFDV+T SC + G+TAA+MLSAGFKPQ+EPHLRGML+SIR
Sbjct: 686  WEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAALMLSAGFKPQSEPHLRGMLSSIR 745

Query: 2163 AAQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENE 2342
            A+QLGDLR KARIFVPSGRWLMGCLDELG LE GQCFIQVS PSLE  FVKHG +FS+ +
Sbjct: 746  ASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSDIK 805

Query: 2343 KKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDL 2522
            K LQVVKGLV IAKNPCLHPGDVRILEAVD P L HL+DCLVFPQKGDRPH+NEASGSDL
Sbjct: 806  KNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDL 865

Query: 2523 DGELYFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTIC 2702
            DG+LYFVTWDENLIPPSK+SWIPM+Y   E ++L R V H DII+FF+KNMV ESLG IC
Sbjct: 866  DGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEIC 925

Query: 2703 NAHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQ 2882
            NAHVVHADLSE+GALDEKC+KLAELAA+AVDFPKTGK+VTMP +LKPK+YPDFMGKEE Q
Sbjct: 926  NAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQ 985

Query: 2883 TYHSNKILGKLYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCS 3062
            +Y S KILGKLYR++KD  D   E S+      ++I YD  LEI GS +FI DAWN KCS
Sbjct: 986  SYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDTTLEILGSTTFIDDAWNSKCS 1045

Query: 3063 YDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFES 3242
            YDGQL GLLGQYKVNREEE+VTG+IWSMPKY++KKQGELKERLKHAY+TLRKEFR VFE 
Sbjct: 1046 YDGQLNGLLGQYKVNREEEVVTGYIWSMPKYNAKKQGELKERLKHAYNTLRKEFRNVFER 1105

Query: 3243 MDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAAD 3422
            M+P+FD L DDEKN MYE+KASAWYQVTYH  W+ +S ELQ+ D    TVMLSFAWIAAD
Sbjct: 1106 MEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWVARSLELQLADAVSNTVMLSFAWIAAD 1165

Query: 3423 YLARIKIRRRRTENDISTKPIDSLGRYLADKI 3518
            YLARIKIR RR +   STKPI+SLGRYL D I
Sbjct: 1166 YLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1778 bits (4606), Expect = 0.0
 Identities = 868/1172 (74%), Positives = 985/1172 (84%)
 Frame = +3

Query: 3    EMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEIDTESIQRKDDYEKVEPHAFVHFAVKH 182
            +ML +Y E  +G VWRCRLK S+TPPDSYP Y+ID E + R  DYEKV PHAFVHFA   
Sbjct: 27   KMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDIDAERVHRMKDYEKVVPHAFVHFASSE 86

Query: 183  SATSALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREE 362
            SA  AL AAG  ELIL  KPL VSLGPENP+ LN++RRTT+P+K SDV VE+GV+ S+++
Sbjct: 87   SAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRRRTTMPFKFSDVSVEMGVLVSKDD 146

Query: 363  FVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEI 542
            FVVGWRGPRTGVDFLVDPFNG CK+ FTKDTAFSF+GE + A+IKCNF+IEFL REI EI
Sbjct: 147  FVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFSFRGEARHAIIKCNFKIEFLVREINEI 206

Query: 543  KHYRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRC 722
            K  +DF SL++L QLASSPL++YRTADDDI+ESV FDLLDDDD WIRTTD T SGAIGRC
Sbjct: 207  KKCKDFTSLVILFQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIRTTDITGSGAIGRC 266

Query: 723  NTYRISVRPRYGPYLTKALEYLRKRRVPVIYESPRHRLLVQDEPDFGVPMLDPFFCIQYK 902
            NTYRIS+RPR GP   KA+ Y   RRVP++    R  L V+DEPDFGV M DPFFC Q  
Sbjct: 267  NTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCNRKMLRVKDEPDFGVSMSDPFFCFQ-N 325

Query: 903  EGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFK 1082
            EGISFKV+FLVNAV+HKGI+NQHQM+ +FF LLRSR EEVN  ALKHM SYK PV DA +
Sbjct: 326  EGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSRQEEVNLAALKHMFSYKWPVNDAIQ 385

Query: 1083 ALELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIAD 1262
             L  +QKWLL NPKLLER  E++DIVEVRRL+ITP KAYCLPP VELSNRVLRNY+++AD
Sbjct: 386  KLVGIQKWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVAD 445

Query: 1263 RFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRK 1442
            RFLRVTFMDE M  LN+NVLTYY   + R ITSNSNPQRT +F+RVK IL+ GF+LCGRK
Sbjct: 446  RFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRK 505

Query: 1443 YSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATV 1622
            YSFLAFS+NQLRDRSAWFFAED    V  I +WMG+F+NRN+AKCAARMGQCFSSTYATV
Sbjct: 506  YSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATV 565

Query: 1623 EVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGV 1802
            EVPS++VNS+LPDIERNGYVFSDGIGM+S  LA+EVAEKL ++ +PP AYQIRYAGYKGV
Sbjct: 566  EVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEVAEKLHLNVNPPSAYQIRYAGYKGV 625

Query: 1803 IARWPNIKDGTHLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIF 1982
            +A WP   DG  L LR SM+KF+SNHTILEICSWTRFQPGFLNRQIVTLLS+L+V+DGIF
Sbjct: 626  VACWPTKNDGILLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIF 685

Query: 1983 WRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIR 2162
            W MQ+ M+S LD+ML D+D+AFDV+T SC + G+TAA+MLSAGFKPQ+EPHLRGML+SIR
Sbjct: 686  WEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAALMLSAGFKPQSEPHLRGMLSSIR 745

Query: 2163 AAQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENE 2342
            A+QLGDLR KARIFVPSGRWLMGCLDELG LE GQCFIQVS PSLE  FVKHG +FS+ +
Sbjct: 746  ASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSDIK 805

Query: 2343 KKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDL 2522
            K LQVVKGLV IAKNPCLHPGDVRILEAVD P L HL+DCLVFPQKGDRPH+NEASGSDL
Sbjct: 806  KNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDL 865

Query: 2523 DGELYFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTIC 2702
            DG+LYFVTWDENLIPPSK+SWIPM+Y   E ++L R V H DII+FF+KNMV ESLG IC
Sbjct: 866  DGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEIC 925

Query: 2703 NAHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQ 2882
            NAHVVHADLSE+GALDEKC+KLAELAA+AVDFPKTGK+VTMP +LKPK+YPDFMGKEE Q
Sbjct: 926  NAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQ 985

Query: 2883 TYHSNKILGKLYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCS 3062
            +Y S KILGKLYR++KD  D   E S+      ++I YD  L I GS  FI DAWN KCS
Sbjct: 986  SYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDTTLVIPGSTVFIDDAWNSKCS 1045

Query: 3063 YDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFES 3242
            YDGQL GLLGQYKVNREEE+VTGHIWSMPKYS+KKQGELKERLKHAY+TLRKEFR VFE 
Sbjct: 1046 YDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLRKEFRNVFER 1105

Query: 3243 MDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAAD 3422
            MDP+FD L DDEKN MYE+KASAWYQVTY+  W+ +S ELQ+ D    TVMLSFAWIAAD
Sbjct: 1106 MDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWVARSLELQLPDAISSTVMLSFAWIAAD 1165

Query: 3423 YLARIKIRRRRTENDISTKPIDSLGRYLADKI 3518
            YLARIKIR R  +   STKPI+SLGRYL DKI
Sbjct: 1166 YLARIKIRHRGLQYSDSTKPINSLGRYLVDKI 1197


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score = 1778 bits (4606), Expect = 0.0
 Identities = 865/1172 (73%), Positives = 985/1172 (84%)
 Frame = +3

Query: 3    EMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEIDTESIQRKDDYEKVEPHAFVHFAVKH 182
            +ML +Y E  +G VWRCRLK SSTPPDSYP +++D E +QR  DYEKV PHAFVHFA   
Sbjct: 27   KMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDVDAERVQRMKDYEKVVPHAFVHFASSE 86

Query: 183  SATSALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREE 362
            SA  AL AAG  ELIL  KPL VSLGPENP+ LN++RRTT+P+K SDV +E+GV+ S+++
Sbjct: 87   SAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRRRTTMPFKFSDVSIEMGVLVSKDD 146

Query: 363  FVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEI 542
            FVVGWRGPRTGVDFLVDPFNG CK+ FTKDTAFSF+GE + A+IKCNF+IEFL REI EI
Sbjct: 147  FVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFSFRGEARHAIIKCNFKIEFLVREINEI 206

Query: 543  KHYRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRC 722
            K  +DF SL++LLQLASSPL++YRTADDDI+ESV FDLLDDDD WIRTTD T SGAIGRC
Sbjct: 207  KKCKDFTSLVILLQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIRTTDITGSGAIGRC 266

Query: 723  NTYRISVRPRYGPYLTKALEYLRKRRVPVIYESPRHRLLVQDEPDFGVPMLDPFFCIQYK 902
            NTYRIS+RPR GP   KA+ Y    RVP++    R  L V+DEPDFGV M DPFFC Q  
Sbjct: 267  NTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRKMLRVRDEPDFGVSMSDPFFCFQ-N 325

Query: 903  EGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFK 1082
            EGISFKV+FLVNAV+HKGI+NQHQM+ +FF LLRS  EEVN  ALKHM SYK PV DA +
Sbjct: 326  EGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSHQEEVNLAALKHMFSYKWPVNDAIQ 385

Query: 1083 ALELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIAD 1262
             L  ++KWLL NPKLLER  E++DIVEVRRL+ITP KAYCLPP VELSNRVLRNY+++AD
Sbjct: 386  KLVGIRKWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVAD 445

Query: 1263 RFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRK 1442
            RFLRVTFMDE M  LN+NVLTYY   + R ITSNSNPQRT +F+RVK IL+ GF+LCGRK
Sbjct: 446  RFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRK 505

Query: 1443 YSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATV 1622
            YSFLAFS+NQLRDRSAWFFAED    V  I +WMG+F+NRN+AKCAARMGQCFSSTYATV
Sbjct: 506  YSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATV 565

Query: 1623 EVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGV 1802
            EVPS++VNS+LPDIERNGYVFSDGIGM+S  LAVEVAEKL +S +PP AYQIRYAG KGV
Sbjct: 566  EVPSSEVNSELPDIERNGYVFSDGIGMISADLAVEVAEKLHLSVNPPSAYQIRYAGCKGV 625

Query: 1803 IARWPNIKDGTHLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIF 1982
            +A WP   DG  L LR SM+KF+SNHTILEICSWTRFQPGFLNRQIVTLLS+L+V+DGIF
Sbjct: 626  VACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIF 685

Query: 1983 WRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIR 2162
            W MQ+ M+S LD+ML D+D+AFDV+T SC + G+TAAIMLSAGFKPQ+EPHLRGML+SIR
Sbjct: 686  WEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIR 745

Query: 2163 AAQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENE 2342
            A+QLGDLR KARIFVPSGRWLMGCLDELG LE GQCFIQVS PSLE  F+KHG +FS+ +
Sbjct: 746  ASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFIKHGPKFSDIK 805

Query: 2343 KKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDL 2522
            K LQVVKGLV IAKNPCLHPGDVRILEAVD P LHHL+DCLVFPQKGDRPH+NEASGSDL
Sbjct: 806  KNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGSDL 865

Query: 2523 DGELYFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTIC 2702
            DG+LYFVTWDENLIPPSK+SWIPM+Y   E +++ R V H DII+FF+KNMV ESLG IC
Sbjct: 866  DGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQMGRQVNHMDIIDFFSKNMVQESLGEIC 925

Query: 2703 NAHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQ 2882
            NAHVVHADLSE+GALDEKC+KLAELAA+AVDFPKTGK+VTMP +LKPK+YPDFMGKEE Q
Sbjct: 926  NAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQ 985

Query: 2883 TYHSNKILGKLYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCS 3062
            +Y S KILGKLYR++KD  D   E S+       +I YD  LEI GS +FI DAWN KCS
Sbjct: 986  SYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPNDIPYDSSLEIPGSTAFIDDAWNSKCS 1045

Query: 3063 YDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFES 3242
            YDGQL GLLGQYKVNREEE+VTGHIWSMPKYS+KKQGELKERLKHAY+TLRKEFR VFE 
Sbjct: 1046 YDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLRKEFRNVFER 1105

Query: 3243 MDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAAD 3422
            M+P+FD L DDEKN MYE+KASAWYQVTY+  W+ +S ELQ+ D    TVMLSFAWIAAD
Sbjct: 1106 MEPDFDLLPDDEKNDMYERKASAWYQVTYNPHWVARSLELQLPDAVSSTVMLSFAWIAAD 1165

Query: 3423 YLARIKIRRRRTENDISTKPIDSLGRYLADKI 3518
            YLARIKIR R  +   STKPI+SLGRYL D I
Sbjct: 1166 YLARIKIRHRGLQYSDSTKPINSLGRYLVDNI 1197


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score = 1778 bits (4605), Expect = 0.0
 Identities = 867/1172 (73%), Positives = 984/1172 (83%)
 Frame = +3

Query: 3    EMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEIDTESIQRKDDYEKVEPHAFVHFAVKH 182
            +ML +Y E  +G VWRCRLK SSTPPDSYP Y+ID E +QR ++YEKV PHAFVHFA   
Sbjct: 27   KMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDIDAERVQRMNNYEKVVPHAFVHFASSE 86

Query: 183  SATSALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREE 362
            SA  AL AAG  EL+L  KPL VSLGPENP+ LN++RRTT+P+K SDV VE+GV+ S+ +
Sbjct: 87   SAKHALAAAGGNELVLGKKPLIVSLGPENPYRLNQRRRTTMPFKFSDVSVEMGVLVSKHD 146

Query: 363  FVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEI 542
            FVVGWRGPRTGVDFLVDPFNG CK+ FTKDT FSF+GE + A+IKCNF+IEFL REI EI
Sbjct: 147  FVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVFSFRGEARHAIIKCNFKIEFLVREINEI 206

Query: 543  KHYRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRC 722
            K  +DF SL++LLQLASSPL++YRTADDDI+ESV FDLLDDDD WIRTTD T SGAIGRC
Sbjct: 207  KKCKDFMSLVILLQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIRTTDITGSGAIGRC 266

Query: 723  NTYRISVRPRYGPYLTKALEYLRKRRVPVIYESPRHRLLVQDEPDFGVPMLDPFFCIQYK 902
            NTYRIS+RPR GP   KA+ Y    RVP++    R  L V+DEPDFGV M DPFFC Q  
Sbjct: 267  NTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRKMLRVRDEPDFGVSMSDPFFCFQ-N 325

Query: 903  EGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFK 1082
            EGISFKVLFL NAV+HKGI+NQHQM  +FF LLRS  EEVN  ALKHM SYK PV DA +
Sbjct: 326  EGISFKVLFLANAVLHKGIVNQHQMINEFFYLLRSHQEEVNLAALKHMFSYKWPVNDAIQ 385

Query: 1083 ALELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIAD 1262
             L  +QKWLL NPKLLER  E++DIVEVRRL+ITP KAYCLPP VELSNRVLRNY+++AD
Sbjct: 386  KLAGIQKWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVAD 445

Query: 1263 RFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRK 1442
            RFLRVTFMDE M  LN+NVLTYY   + R ITSNSNPQRT +F+RVK IL+ GF+LCGRK
Sbjct: 446  RFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRK 505

Query: 1443 YSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATV 1622
            YSFLAFS+NQLRDRSAWFFAED    V  I +WMG+F+NRN+AKCAARMGQCFSSTYATV
Sbjct: 506  YSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATV 565

Query: 1623 EVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGV 1802
            EVPS++VNS+LPDIERNGYVFSDGIGM+S  LA+EVAEKL +S +PP AYQIRYAG KGV
Sbjct: 566  EVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEVAEKLHLSVNPPAAYQIRYAGCKGV 625

Query: 1803 IARWPNIKDGTHLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIF 1982
            +A WP   DG  L LR SM+KF+SNHTILEICSWTRFQPGFLNRQIVTLLS+L+V+DGIF
Sbjct: 626  VACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIF 685

Query: 1983 WRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIR 2162
            W MQ+ M++ LD+ML D+D+AFDV+T SC + G+TAA+MLSAGFKPQ+EPHLRGML+SIR
Sbjct: 686  WEMQKEMIAGLDKMLVDSDVAFDVITASCAEAGNTAALMLSAGFKPQSEPHLRGMLSSIR 745

Query: 2163 AAQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENE 2342
            A+QLGDLR KARIFVPSGRWLMGCLDELG LE GQCFIQVS PSLE  FVKHGS+FS+ +
Sbjct: 746  ASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGSKFSDIK 805

Query: 2343 KKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDL 2522
            K LQVVKGLV IAKNPCLHPGDVRILEAVD P L HL+DCLVFPQKGDRPH+NEASGSDL
Sbjct: 806  KNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDL 865

Query: 2523 DGELYFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTIC 2702
            DG+LYFVTWDEN+IPPSK+SWIPM+Y   E ++L R V H DII+FF+KNMV ESLG IC
Sbjct: 866  DGDLYFVTWDENIIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEIC 925

Query: 2703 NAHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQ 2882
            NAHVVHADLSE+GALDEKC+KLAELAA+AVDFPKTGK+VTMP +LKPK+YPDFMGKEE Q
Sbjct: 926  NAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQ 985

Query: 2883 TYHSNKILGKLYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCS 3062
            +Y S KILGKLYR++KD  D   E S+      ++I YD  LEI GS +FI DAWN KCS
Sbjct: 986  SYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDTTLEILGSTTFIDDAWNSKCS 1045

Query: 3063 YDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFES 3242
            YDGQL GLLGQYKVNREEE+VTGHIWSMPKYS+KKQGELKERLKHAY+TLRKEFR VFE 
Sbjct: 1046 YDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLRKEFRNVFER 1105

Query: 3243 MDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAAD 3422
            M+P+FD L DDEKN MYE+KASAWYQVTYH  W+ +S ELQ+ D    TVMLSFAWIAAD
Sbjct: 1106 MEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWVARSLELQIPDAVSSTVMLSFAWIAAD 1165

Query: 3423 YLARIKIRRRRTENDISTKPIDSLGRYLADKI 3518
            YLARIKIR R      STKPI+SLGRYLADKI
Sbjct: 1166 YLARIKIRHRGLPYSDSTKPINSLGRYLADKI 1197


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score = 1770 bits (4585), Expect = 0.0
 Identities = 861/1172 (73%), Positives = 980/1172 (83%)
 Frame = +3

Query: 3    EMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEIDTESIQRKDDYEKVEPHAFVHFAVKH 182
            +ML +Y E  +G VWRCRLK S+TPPDSYP Y++D   + R  DYEKV PHAFVHFA   
Sbjct: 27   KMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDVDAARVHRMKDYEKVVPHAFVHFASSE 86

Query: 183  SATSALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREE 362
            SA  AL AAG   LIL  KPL VSLGPENP+ LN++RRTT+P+K SDV VE+GV+ S+++
Sbjct: 87   SAKYALAAAGGNGLILGKKPLIVSLGPENPYRLNQRRRTTMPFKFSDVSVEMGVLVSKDD 146

Query: 363  FVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEI 542
            FVVGWRGPRTGVDF VDPFNG CK+ FTKDTAFSF+GE K A+IKCNF+IEF+ REI EI
Sbjct: 147  FVVGWRGPRTGVDFFVDPFNGACKILFTKDTAFSFRGEAKHAIIKCNFKIEFMVREINEI 206

Query: 543  KHYRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRC 722
            K ++DF SL++LLQLASSPL++YRTADDDI+ESV FDLLDDDD WIRTTD T SGAIGRC
Sbjct: 207  KKFKDFTSLVILLQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIRTTDITGSGAIGRC 266

Query: 723  NTYRISVRPRYGPYLTKALEYLRKRRVPVIYESPRHRLLVQDEPDFGVPMLDPFFCIQYK 902
            NTYRIS+RPR GP   KA+ Y    RVP++    R  L V+DEPDFGV M DPFFC Q  
Sbjct: 267  NTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRKMLRVRDEPDFGVSMSDPFFCFQ-N 325

Query: 903  EGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFK 1082
            EGISFKV+FLVNAV+HKGI+NQHQM+ +FF LLRS  EEVN  ALKHM SYK PV DA +
Sbjct: 326  EGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSHQEEVNLAALKHMFSYKWPVNDAIQ 385

Query: 1083 ALELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIAD 1262
             L  +QKWLL NPKLLER  E++DIVEVRRL+ITP KAYCLPP VELSNRVLRNY+++AD
Sbjct: 386  KLVGIQKWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVAD 445

Query: 1263 RFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRK 1442
            RFLRVTFMDE M  LN+NVLTYY   + R ITSNSNPQRT +F+RVK IL+ GF+LCGRK
Sbjct: 446  RFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRK 505

Query: 1443 YSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATV 1622
            YSFLAFS+NQLRDRSAWFFAED    V  I +WMG+F+NRN+AKCAARMGQCFSSTYATV
Sbjct: 506  YSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATV 565

Query: 1623 EVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGV 1802
            EVPS++VNS+LPDIERNGYVFSDGIGM+S  LA+EVAEKL +S +PP AYQIRYAG KGV
Sbjct: 566  EVPSSEVNSELPDIERNGYVFSDGIGMISADLALEVAEKLHLSVNPPSAYQIRYAGCKGV 625

Query: 1803 IARWPNIKDGTHLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIF 1982
            +A WP   DG  L LR SM+KF+SNHTILEICSWTRFQPGFLNRQIVTLLS+L+V+DGIF
Sbjct: 626  VACWPTKNDGILLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIF 685

Query: 1983 WRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIR 2162
            W MQ+ M+S L++ML D+D+AFDV+T SC + G+TAAIMLSAGFKPQ+EPHLRGML+SIR
Sbjct: 686  WEMQKEMISGLNKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIR 745

Query: 2163 AAQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENE 2342
            A+QLGDLR KARIFVPSGRWLMGCLDELG LE GQCFIQVS PSLE  F+KHG +FS+ +
Sbjct: 746  ASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFIKHGPKFSDIK 805

Query: 2343 KKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDL 2522
            K LQVVKGLV IAKNPCLHPGDVRILEAVD P LHHL+DCLVFPQKGDRPH+NEASGSDL
Sbjct: 806  KNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGSDL 865

Query: 2523 DGELYFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTIC 2702
            DG+LYFVTWDENLIPPSK+SWIPM+Y   E ++L R V H DII+FF+KNMV ESLG IC
Sbjct: 866  DGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEIC 925

Query: 2703 NAHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQ 2882
            NAHVVHADLSE+GALDEKC+KLAELAA+AVDFPKTGK+VTMP +LKPK+YPDFMGKEE Q
Sbjct: 926  NAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQ 985

Query: 2883 TYHSNKILGKLYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCS 3062
            +Y S KILGKLYR++KD  D   E S+       +I YD  LEI GS  F+ DAWNCKCS
Sbjct: 986  SYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPNDIPYDSSLEIPGSTVFMGDAWNCKCS 1045

Query: 3063 YDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFES 3242
            YDGQL GLLGQYKVNREEE+VTGHIWSMPKYS+KKQGELKERLKHAY+ LRKEFR VFE 
Sbjct: 1046 YDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNMLRKEFRNVFER 1105

Query: 3243 MDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAAD 3422
            MDP+FD L DDEKN MYE+KASAWYQVTY+  W+ +S ELQ+ D    TVMLSFAWIAAD
Sbjct: 1106 MDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWVARSLELQLPDAVSSTVMLSFAWIAAD 1165

Query: 3423 YLARIKIRRRRTENDISTKPIDSLGRYLADKI 3518
            YLARI IR R  +   STKPI+SLGRYL D I
Sbjct: 1166 YLARINIRHRGLQYSDSTKPINSLGRYLVDNI 1197


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1757 bits (4550), Expect = 0.0
 Identities = 855/1169 (73%), Positives = 994/1169 (85%), Gaps = 2/1169 (0%)
 Frame = +3

Query: 18   YFENSIGMVWRCRLKTSSTPPDSYPNYEI-DTESIQRKDDYEKVEPHAFVHFAVKHSATS 194
            Y E++IG V RCRLKTSSTPP+SYP++EI DT  I+R +DY+KVEPHAFVHF    +AT 
Sbjct: 32   YLEDTIGSVDRCRLKTSSTPPESYPDFEIIDTAKIERTEDYKKVEPHAFVHFVSPEAATW 91

Query: 195  ALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEFVVG 374
            ALDAAG+ EL L GKPLKVSLGPE P HLN++RRTT P+K  DV +E+G++ SR+E+  G
Sbjct: 92   ALDAAGKSELFLHGKPLKVSLGPETPFHLNQRRRTTFPFKFPDVRLEIGILVSRDEYFAG 151

Query: 375  WRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIKHYR 554
            WRGP +GVDFLVDPF+G CK  FTKDTAFSFKG  K AVIKCNF++EFL REI E++  R
Sbjct: 152  WRGPSSGVDFLVDPFDGTCKFLFTKDTAFSFKGMPKHAVIKCNFKVEFLVREINEVRQRR 211

Query: 555  DFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCNTYR 734
            D  SLI+LLQL+SSP +YYRTADDDI+E+VPFDLLDDDDPWIRTTDFT SGAIGRCN+YR
Sbjct: 212  DMSSLILLLQLSSSPFVYYRTADDDIEETVPFDLLDDDDPWIRTTDFTVSGAIGRCNSYR 271

Query: 735  ISVRPRYGPYLTKALEYLRKRRVPVIYESPRHRLLVQDEPDFGVPMLDPFFCIQYKEGIS 914
            IS+ PRYG  L KA++YLR RRV V+ +SP+ +L V+DEPDFG+PM DPFFCIQ+KEGI 
Sbjct: 272  ISIPPRYGAKLKKAMDYLRARRVNVLEDSPKWQLRVRDEPDFGLPMSDPFFCIQHKEGID 331

Query: 915  FKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALEL 1094
            F+V+FLVNAVMHKGIINQHQ+S+KFFDLLRS+ +++N  ALKH+CSY+HPV+DA++ L+L
Sbjct: 332  FRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQQKDINIAALKHICSYRHPVFDAYQRLKL 391

Query: 1095 VQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLR 1274
            V KWLL NPKLL+ P+E++DIVEVRRL+ITP+KAYCLPPEVELSNRVLRNY+ ++DRFLR
Sbjct: 392  VHKWLLKNPKLLKSPKELDDIVEVRRLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFLR 451

Query: 1275 VTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFL 1454
            VTFMDE M T+N NVL YYV P+ + ITSNS PQ+T +FKRVK IL +GFYLCGRKYSFL
Sbjct: 452  VTFMDEGMQTINANVLNYYVAPIVKVITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFL 511

Query: 1455 AFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPS 1634
            AFSSNQLRDRSAWFFAEDK T V  IK+WMGKFTNRN+AKCAARMGQCFSSTYATVEVPS
Sbjct: 512  AFSSNQLRDRSAWFFAEDKKTSVRAIKSWMGKFTNRNVAKCAARMGQCFSSTYATVEVPS 571

Query: 1635 TQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARW 1814
             +V  +LPDI+RNGY FSDGIG +   LA+EVAEKL++    P AYQIRYAG KGV+A W
Sbjct: 572  WEV-KELPDIKRNGYDFSDGIGKIVPDLAMEVAEKLKLE-GTPSAYQIRYAGCKGVVACW 629

Query: 1815 PNIKDGTHLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQ 1994
            P+  DG  L  R SM KF S+HTILEICSWTRFQPGFLNRQIVTLLSAL V D IFW+MQ
Sbjct: 630  PSDNDGIRLSWRPSMNKFLSDHTILEICSWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQ 689

Query: 1995 ETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQL 2174
            E+M+S+L++ML DTD+AFDV+  SC +QG+TAAIMLSAGFKPQTEPHL+GMLT IRAAQ 
Sbjct: 690  ESMISKLNQMLTDTDVAFDVLIASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQF 749

Query: 2175 GDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQ 2354
              LREKARIFVPSGRWLMGCLDELGVLE GQCFIQVS PSLE  F+KHGSRFS  +K L+
Sbjct: 750  WGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSSPSLENCFLKHGSRFSA-QKNLK 808

Query: 2355 VVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGEL 2534
            V+KG+VAIAKNPCLHPGDVRILEAVDAP L HL DCLVFPQKGDRPH+NEASGSDLDG+L
Sbjct: 809  VIKGIVAIAKNPCLHPGDVRILEAVDAPGLEHLVDCLVFPQKGDRPHSNEASGSDLDGDL 868

Query: 2535 YFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNAHV 2714
            YFVTW+E LIPPSK+SW PM Y + EA+ L R+V   DII+FFTKNMVNE+LG ICNAHV
Sbjct: 869  YFVTWEETLIPPSKQSWPPMQYDSAEAKALAREVTSLDIIDFFTKNMVNENLGAICNAHV 928

Query: 2715 VHADLSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQTYHS 2894
            VHAD SEYGALDE C+ LAE AA AVDFPKTGK+VT+PP LKPK+YPDFMGKEE QTY S
Sbjct: 929  VHADRSEYGALDEACLDLAERAATAVDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRS 988

Query: 2895 NKILGKLYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCSYDGQ 3074
            NKILGK+YR+IKDA +    ESSEQ F  + + +D+DL I GS  FI DAW  KCSYDGQ
Sbjct: 989  NKILGKMYRQIKDAYNEDVSESSEQIFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQ 1048

Query: 3075 LIGLLGQYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFESMDPE 3254
            L GLLGQYKV REEE+VTGH+WSMPKY S+KQGEL ERLKHAYS+L+KEFR++FE M+ +
Sbjct: 1049 LNGLLGQYKVKREEEVVTGHVWSMPKYKSRKQGELTERLKHAYSSLKKEFRQIFEKMNSD 1108

Query: 3255 FDQLSDDEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDA-GKTVMLSFAWIAADYLA 3431
            FDQL+DDEKN +YE+KASAWYQVTYH +W+KKS ELQ  D+  G+ VMLSFAWI ADYLA
Sbjct: 1109 FDQLTDDEKNRLYEQKASAWYQVTYHPTWVKKSLELQNPDEVFGERVMLSFAWITADYLA 1168

Query: 3432 RIKIRRRRTENDISTKPIDSLGRYLADKI 3518
            RIKIRR+ T N  S+KPI+SL R+L D+I
Sbjct: 1169 RIKIRRKGTGNVDSSKPINSLARFLVDRI 1197


>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
            tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
            tuberosum]
          Length = 1198

 Score = 1742 bits (4511), Expect = 0.0
 Identities = 846/1172 (72%), Positives = 978/1172 (83%)
 Frame = +3

Query: 3    EMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEIDTESIQRKDDYEKVEPHAFVHFAVKH 182
            +ML +  E+ +G VWRCRLKTSSTPPDSYP Y+ID E+++R ++Y KVEPHAFVHFA   
Sbjct: 27   KMLSECLEDQVGQVWRCRLKTSSTPPDSYPTYDIDVENVRRMNNYIKVEPHAFVHFASSE 86

Query: 183  SATSALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREE 362
            SA +AL AA R EL L  KPLKVSLGPENP ++N++RRT +P+K SDV VE+GV+ S ++
Sbjct: 87   SAQNALAAARRDELFLEEKPLKVSLGPENPFNMNKRRRTIMPFKFSDVGVEIGVLVSNDD 146

Query: 363  FVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEI 542
            FVVGWRGP +GV+FLVDPFNG CK+ FT+DTAF FKGE K AVIKCNF+IEFL REI EI
Sbjct: 147  FVVGWRGPHSGVNFLVDPFNGTCKILFTRDTAFCFKGEGKHAVIKCNFKIEFLLREINEI 206

Query: 543  KHYRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRC 722
               +DF SL++LLQL SSPL++YRTADDDI+ESV FDLLDDDD WIRTTD T SGAIGR 
Sbjct: 207  NECKDFASLVLLLQLTSSPLVFYRTADDDIEESVAFDLLDDDDQWIRTTDITCSGAIGRF 266

Query: 723  NTYRISVRPRYGPYLTKALEYLRKRRVPVIYESPRHRLLVQDEPDFGVPMLDPFFCIQYK 902
            NTYRIS+RPR GP L KA+ Y R+ RVPV+ +  R  L V+DEPDFGV + +PFFC Q  
Sbjct: 267  NTYRISIRPRNGPSLKKAMNYFRESRVPVVEQGNRQMLRVRDEPDFGVSLSEPFFCFQNH 326

Query: 903  EGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFK 1082
            EGISFKVLFLVNAV+ KGI+NQHQM+ +FF LLR   E VN  ALKH+ SYK PV DA +
Sbjct: 327  EGISFKVLFLVNAVLQKGIVNQHQMTAEFFSLLRKHQEGVNLAALKHIFSYKRPVNDAIQ 386

Query: 1083 ALELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIAD 1262
             L  VQKWL  NP LLER  +++D+VEVRRL+ITP KAYCLPP VELSNRVLR Y++++D
Sbjct: 387  KLASVQKWLFKNPNLLERTGQLDDVVEVRRLVITPTKAYCLPPTVELSNRVLRKYKHVSD 446

Query: 1263 RFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRK 1442
            RFLRVTFMDE M  LN+NVLTYY   + R ITS+SNPQRT +F+RVK IL+ GFYLCGR+
Sbjct: 447  RFLRVTFMDEGMRNLNRNVLTYYAATIVREITSSSNPQRTGIFQRVKSILSKGFYLCGRR 506

Query: 1443 YSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATV 1622
            YSFLAFS+NQLRDRSAWFFAE     V NI NWMGKF NRN+AKCAARMGQCFSSTYATV
Sbjct: 507  YSFLAFSANQLRDRSAWFFAEAPEIRVPNIINWMGKFGNRNVAKCAARMGQCFSSTYATV 566

Query: 1623 EVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGV 1802
            EV  ++VNS+LPDIERNGYVFSDGIGMMS  L++EVA KLQ+S +PPCAYQIRYAG KGV
Sbjct: 567  EVLPSEVNSELPDIERNGYVFSDGIGMMSADLSIEVAAKLQLSVNPPCAYQIRYAGCKGV 626

Query: 1803 IARWPNIKDGTHLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIF 1982
            +A WP  KDG  L LR SM+KF+SNHTILEICSWTR QPGFLNRQI+TLLS+LEV+D +F
Sbjct: 627  VACWPAEKDGIRLSLRPSMKKFDSNHTILEICSWTRLQPGFLNRQIITLLSSLEVKDEMF 686

Query: 1983 WRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIR 2162
            W MQ+ M+S+LD++L D+D+AFDV+T SC + G+TAAIMLSAGFKPQ+EPHLRGML SIR
Sbjct: 687  WEMQKEMLSKLDKILVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLASIR 746

Query: 2163 AAQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENE 2342
            AAQLGDLR K R+FVPSGRWLMGCLDEL  LE GQCFIQVS PSLE  FVKHG +FSE +
Sbjct: 747  AAQLGDLRNKTRMFVPSGRWLMGCLDELRKLEQGQCFIQVSSPSLETCFVKHGPKFSEIK 806

Query: 2343 KKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDL 2522
            K LQV+KGLV IAKNPCLHPGDVRILEAVD P LHHL+DCLVFPQKGDRPH+NEASGSDL
Sbjct: 807  KNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGSDL 866

Query: 2523 DGELYFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTIC 2702
            DG+LYFVTWDENLIPPSK+SW+PMDYA  EA++L R V+H+DII+FF+KNMV ESLG IC
Sbjct: 867  DGDLYFVTWDENLIPPSKKSWMPMDYAPAEAKQLGRQVQHTDIIDFFSKNMVQESLGEIC 926

Query: 2703 NAHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQ 2882
            NAHVVHADLSE+GALDEKC+KLAELAA+AVDFPKTGK+VTMP +LKPK+YPDFMGKE  Q
Sbjct: 927  NAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEPFQ 986

Query: 2883 TYHSNKILGKLYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCS 3062
            TY S KILGKLYR++ D  D    ESS   F  ++I YD ++EI G + FI DAWN KCS
Sbjct: 987  TYESKKILGKLYRQVIDVYDAEGGESSGLEFVPKDIPYDTNIEILGYEDFIDDAWNHKCS 1046

Query: 3063 YDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFES 3242
            YDGQL GLLGQYKVN EEE+VTGHIWSMPKYS+KKQGELKERLKHAY+TLRKEFR VFE 
Sbjct: 1047 YDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLRKEFRNVFEQ 1106

Query: 3243 MDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAAD 3422
            M+P+FD L  DEKN MYE+KASAWY+VTYH  W+ +S ELQ+ D     VMLSFAWIAAD
Sbjct: 1107 MEPDFDMLPVDEKNDMYERKASAWYRVTYHPHWVTRSLELQLPDAVSNGVMLSFAWIAAD 1166

Query: 3423 YLARIKIRRRRTENDISTKPIDSLGRYLADKI 3518
            Y+ARIKIR+R  +N  STKPI+ LGRYL +KI
Sbjct: 1167 YIARIKIRQRGMQNSDSTKPINFLGRYLVNKI 1198


>ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
            gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase
            6 [Solanum lycopersicum]
          Length = 1197

 Score = 1727 bits (4474), Expect = 0.0
 Identities = 843/1172 (71%), Positives = 972/1172 (82%)
 Frame = +3

Query: 3    EMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEIDTESIQRKDDYEKVEPHAFVHFAVKH 182
            +ML +Y E  +G VWRCRLKTSSTPPDSYP Y+ID E ++R ++Y KVEPHAFVHFA   
Sbjct: 27   KMLSEYLEEQVGQVWRCRLKTSSTPPDSYPTYDIDVEKVRRMNNYIKVEPHAFVHFASSE 86

Query: 183  SATSALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREE 362
            SA +AL AA R EL L  KPLKVSLGPEN  ++NE+RRT +PYK SDV VE+GV+ S ++
Sbjct: 87   SAQNALAAARRDELFLEEKPLKVSLGPENTFNMNERRRTFMPYKFSDVGVEIGVLVSNDD 146

Query: 363  FVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEI 542
            FVVGWRGP +GV+FLVDPFNG+CK+ FT+DTAF FKGE K AVIKCNF+IEFL REI EI
Sbjct: 147  FVVGWRGPHSGVNFLVDPFNGKCKILFTRDTAFCFKGEGKHAVIKCNFKIEFLLREINEI 206

Query: 543  KHYRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRC 722
               +DF SL++LLQLASSPL++YRTADDDI+ESV FDLLDDDD WIRTTD T SGAIGR 
Sbjct: 207  NECKDFSSLVLLLQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIRTTDITFSGAIGRF 266

Query: 723  NTYRISVRPRYGPYLTKALEYLRKRRVPVIYESPRHRLLVQDEPDFGVPMLDPFFCIQYK 902
            NTYR+S+RPR GP   KA+ Y R+ RVPV+ E     L V++EPDFG  + +PFFC Q  
Sbjct: 267  NTYRVSIRPRNGPSFKKAMNYFRESRVPVV-EQGEQMLRVRNEPDFGESVSEPFFCFQNH 325

Query: 903  EGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFK 1082
            EGISFKVLFLVNAV+HKGI+NQHQM+ +FF LLR   E VN  ALKH+ SYK PV DA +
Sbjct: 326  EGISFKVLFLVNAVLHKGIVNQHQMTAEFFSLLRKHQEGVNLAALKHIFSYKRPVNDAIR 385

Query: 1083 ALELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIAD 1262
             L  VQKWL NNP LLER  +++D+VEVRRL+ITP KAYCLPP VELSNRVLR Y++I+D
Sbjct: 386  KLASVQKWLFNNPNLLERTGQLDDVVEVRRLVITPTKAYCLPPTVELSNRVLRKYKHISD 445

Query: 1263 RFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRK 1442
            RFLRVTFMDE M  LN+N LTYY   + R ITS+SNPQRT +F+RVK I+N GFYLCGR+
Sbjct: 446  RFLRVTFMDEGMRNLNRNALTYYAANIVREITSSSNPQRTGIFQRVKIIVNKGFYLCGRR 505

Query: 1443 YSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATV 1622
            YSFLAFS+NQLRDRSAWFFAE     V +I NWMGKF NRN+AKCAARMGQCFSSTYATV
Sbjct: 506  YSFLAFSANQLRDRSAWFFAETPEIRVTSIINWMGKFGNRNVAKCAARMGQCFSSTYATV 565

Query: 1623 EVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGV 1802
            EV  ++VNS+LPDIERNGYVFSDGIGMM+  L++EVA KLQ+S +PPCAYQIRYAG KGV
Sbjct: 566  EVLPSEVNSELPDIERNGYVFSDGIGMMTADLSIEVAAKLQLSVNPPCAYQIRYAGCKGV 625

Query: 1803 IARWPNIKDGTHLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIF 1982
            +A WP  KDG  L LR SM+KF+SNHTILEICSWTR QPGFLNRQI+TLLS+LEV+D +F
Sbjct: 626  VACWPAEKDGIRLSLRPSMKKFDSNHTILEICSWTRLQPGFLNRQIITLLSSLEVKDEMF 685

Query: 1983 WRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIR 2162
            W MQ+ M+S+LD++L D+D+AFDV+T SC + G+TAAIMLSAGFKPQ+EPHLRGML SIR
Sbjct: 686  WEMQKEMLSKLDKILVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLASIR 745

Query: 2163 AAQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENE 2342
            AAQLGDLR K R+FV SGRWLMGCLDELG LE GQCFIQVS PSLE  FVKHG  FSE +
Sbjct: 746  AAQLGDLRNKTRMFVTSGRWLMGCLDELGELEQGQCFIQVSSPSLETCFVKHGPEFSEIK 805

Query: 2343 KKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDL 2522
            K LQVVKGLV IAKNPCLHPGDVRILEAVD P LHHL+DCLVFPQKGDRPH+NEASGSDL
Sbjct: 806  KNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGSDL 865

Query: 2523 DGELYFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTIC 2702
            DG+LYFVTWDENLIPPSK+SW+PM YA  EA++L R V+H+DII+FF KNMV ESLG IC
Sbjct: 866  DGDLYFVTWDENLIPPSKKSWMPMAYAPAEAKQLGRQVQHTDIIDFFLKNMVQESLGEIC 925

Query: 2703 NAHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQ 2882
            NAHVVHADLSE+GA+DEKC+KLAELAA+AVDFPKTGK+VTMP +LKPK+YPDFMGKE  Q
Sbjct: 926  NAHVVHADLSEFGAMDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEPFQ 985

Query: 2883 TYHSNKILGKLYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCS 3062
            +Y S KILGKLYR++ D  D    ESS   +  ++I YD +LEI G + FI DAWN KCS
Sbjct: 986  SYESKKILGKLYRQVIDVYDAEGGESSGLEYVPKDIPYDTNLEIPGYEDFIDDAWNHKCS 1045

Query: 3063 YDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFES 3242
            YDGQL GLLGQYKVN EEE+VTGHIWSMPKYS+KKQGELKERLKHAY+ LRKEFR VFE 
Sbjct: 1046 YDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSAKKQGELKERLKHAYNMLRKEFRNVFEQ 1105

Query: 3243 MDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAAD 3422
            M+P+FD L  DEKN MYE+KA AWY+VTYH  W+ +S ELQ+ D     VMLSFAWIAAD
Sbjct: 1106 MEPDFDLLPIDEKNDMYERKAFAWYRVTYHPHWVTRSLELQLPDAVSNGVMLSFAWIAAD 1165

Query: 3423 YLARIKIRRRRTENDISTKPIDSLGRYLADKI 3518
            Y+ARIKIR+R  +N  STKPIDSLGRYL +KI
Sbjct: 1166 YIARIKIRQRGMQNFDSTKPIDSLGRYLVNKI 1197


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score = 1727 bits (4473), Expect = 0.0
 Identities = 837/1177 (71%), Positives = 975/1177 (82%), Gaps = 7/1177 (0%)
 Frame = +3

Query: 9    LMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI-DTESIQRKDDYEKVEPHAFVHFAVKHS 185
            L+ Y +N IG VWRCRLKTS TPP+SYPN+EI DT  IQR D Y +VEPHAFVHFA   S
Sbjct: 29   LVAYLDNEIGQVWRCRLKTSWTPPESYPNFEITDTAVIQRVDAYRRVEPHAFVHFASPDS 88

Query: 186  ATSALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEF 365
            AT A +AAG  EL   G+P+KVSLGPENP HLN++RRTTIP+KLSDV VE+G + SR+EF
Sbjct: 89   ATWAKNAAGHCELFFNGRPVKVSLGPENPFHLNQRRRTTIPFKLSDVHVEIGTLVSRDEF 148

Query: 366  VVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIK 545
            +VGWRGP +GVDFLVDPF+G+CK  FT+DTAFSFKG  + AVI+C+F++EFL R+I EIK
Sbjct: 149  LVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAFSFKGTTEHAVIRCDFKLEFLVRDINEIK 208

Query: 546  HYRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCN 725
             Y D   L++LLQLAS+P ++YRTADDDI+  VPFDLLDDDDPWIRTTDFTPSGAIGRCN
Sbjct: 209  QYTDTSCLVILLQLASAPSVWYRTADDDIEVLVPFDLLDDDDPWIRTTDFTPSGAIGRCN 268

Query: 726  TYRISVRPRYGPYLTKALEYLRKRRVPVIYESPRHRLLVQDEPDFGVPMLDPFFCIQYKE 905
            +YR+S+ PR+G  L +AL +LR+RRV    +  R  L V  EP++ +PM DPFFCI ++E
Sbjct: 269  SYRVSIPPRHGAKLKRALNFLRERRVQE--DCLRRPLHVTAEPEYEMPMSDPFFCIHHEE 326

Query: 906  GISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKA 1085
            G+ F ++FLVNAVMHKGI NQHQ+S+ FFDLLR++P +VN  AL+H+CSYKHPV+DA K 
Sbjct: 327  GVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRNQPLDVNIAALRHICSYKHPVFDAHKR 386

Query: 1086 LELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADR 1265
            L+ VQ+WLL NPKL    ++++DIVE+RRL ITP +AYCLPPEVELSNRVLR Y++IAD+
Sbjct: 387  LKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITPTRAYCLPPEVELSNRVLRRYKDIADQ 446

Query: 1266 FLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKY 1445
            FLRVTFMDE + T+N N LTYY  P+ R ITSNS  Q+T +FKRVK IL +GFYLCGRKY
Sbjct: 447  FLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNSFSQKTRIFKRVKSILTDGFYLCGRKY 506

Query: 1446 SFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVE 1625
            SFLAFSSNQLRDRSAWFFAED  T V+ I+NWMGKFTNRNIAKCAARMGQCFSSTYATVE
Sbjct: 507  SFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMGKFTNRNIAKCAARMGQCFSSTYATVE 566

Query: 1626 VPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVI 1805
            VPS +    LPDIERN Y+FSDGIGM++  LA EVAEKL++  +PPCAYQIRYAG KGV+
Sbjct: 567  VPSAEAILDLPDIERNNYIFSDGIGMITPDLAKEVAEKLKLEVNPPCAYQIRYAGCKGVV 626

Query: 1806 ARWPNIKDGTHLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFW 1985
            A WP   DG  L LR SM KF SNHT LEICSWTRFQPGFLNRQI+TLLS L+V D IFW
Sbjct: 627  ACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWTRFQPGFLNRQIITLLSTLDVPDEIFW 686

Query: 1986 RMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRA 2165
            +MQ  MVS+L++M  D D+AFDVVT SC +QG+TAAIMLSAGF P+TEPHL GMLT IRA
Sbjct: 687  KMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNTAAIMLSAGFNPKTEPHLCGMLTCIRA 746

Query: 2166 AQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEK 2345
            AQL  LREK RIFVPSGRWLMGCLDELGVLEHGQCFIQVS PSLE  F KHGSRFSE++K
Sbjct: 747  AQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQCFIQVSNPSLESCFWKHGSRFSESKK 806

Query: 2346 KLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLD 2525
            KLQVVKG V +AKNPCLHPGD+RILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLD
Sbjct: 807  KLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLD 866

Query: 2526 GELYFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICN 2705
            G+LYFVTWDENLIPPSKRSW+PM Y A EA++L R V H DII+FF KNMVNE+LG ICN
Sbjct: 867  GDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLNRPVNHQDIIDFFAKNMVNENLGAICN 926

Query: 2706 AHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQT 2885
            AHVVHADLSEYGALDE CIKLAELAA AVDFPKTGK+VTMPP LKPKLYPDFMGKE+ Q+
Sbjct: 927  AHVVHADLSEYGALDENCIKLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEDYQS 986

Query: 2886 YHSNKILGKLYRKIK------DANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAW 3047
            Y+SNKILG+LYR++K      D +D     SSE      +I YD+DLE++GS  +I DAW
Sbjct: 987  YNSNKILGRLYRQVKDDYNDDDDDDDDAATSSELNLVRGDIPYDKDLEVSGSSDYILDAW 1046

Query: 3048 NCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFR 3227
            + KCSYDGQL GLL QYKV REEE+VTGHIWSMPK +S+KQGELKERLK +Y +L+KEFR
Sbjct: 1047 DQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSMPKCNSRKQGELKERLKQSYHSLKKEFR 1106

Query: 3228 KVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFA 3407
            +VFE MD +F+QL++DEKN++YE+KASAWYQV YH  W+ KS ELQ  D AG   MLSFA
Sbjct: 1107 QVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAYHPKWVNKSMELQEPDAAGCASMLSFA 1166

Query: 3408 WIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 3518
            WIAADYLARIKIR R  +   ++KP++SL +YLAD+I
Sbjct: 1167 WIAADYLARIKIRCRGFDGVDTSKPVNSLVKYLADRI 1203


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score = 1716 bits (4445), Expect = 0.0
 Identities = 818/1172 (69%), Positives = 977/1172 (83%), Gaps = 2/1172 (0%)
 Frame = +3

Query: 9    LMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI-DTESIQRKDDYEKVEPHAFVHFAVKHS 185
            L++Y + +IG+VWRCRLKTS TPP+SYPN+EI D   I+R +DY +V PHAFVHFA+  S
Sbjct: 29   LLEYLDRAIGLVWRCRLKTSWTPPESYPNFEITDITKIERTEDYRRVVPHAFVHFALPQS 88

Query: 186  ATSALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEF 365
            AT A++A+GR EL L  K LKVSLGP+NP  LN++RRTT P+KLSDV  E+G + SR+EF
Sbjct: 89   ATLAMNASGRCELFLNNKALKVSLGPKNPFTLNQRRRTTTPFKLSDVGFEIGNLVSRDEF 148

Query: 366  VVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIK 545
             VGWRGP +GVDFLVDPF+G CK  F+++TAFS K   + AVIKC+F++EFL R+I EI 
Sbjct: 149  FVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAFSLKSTSEHAVIKCDFKVEFLVRDINEII 208

Query: 546  HYRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCN 725
             Y +   L++LLQLAS+P ++YRTADDDI+  VPFDLLDDDDPWIRTTDFT SGAIGRC+
Sbjct: 209  QYTETSCLVLLLQLASAPWVWYRTADDDIEAWVPFDLLDDDDPWIRTTDFTASGAIGRCH 268

Query: 726  TYRISVRPRYGPYLTKALEYLRKRRVPVIYE-SPRHRLLVQDEPDFGVPMLDPFFCIQYK 902
            +YR+S+ PR+G  L KA++YL++RRV V+ E + R R+ + DEPDFG+PM DPFFCI +K
Sbjct: 269  SYRVSIPPRHGSKLRKAVKYLKERRVQVLQEENHRRRIRILDEPDFGMPMSDPFFCIHHK 328

Query: 903  EGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFK 1082
            EGI+F+VLFLVNAVMHKGI NQHQ+S  FFDLLR++  EVN  ALKH+C+Y+ PV++A++
Sbjct: 329  EGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQHTEVNVSALKHICTYRRPVFNAYR 388

Query: 1083 ALELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIAD 1262
             L+ VQ+WLL NP L + P+++ D+VE+RRL+ITP KAYCLPPEVELSNRVLR Y+++AD
Sbjct: 389  RLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVAD 448

Query: 1263 RFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRK 1442
            RFLRVTFMDE +  +N NVL YYV P+ R ITSNS PQ+T +FKRV+ IL  GFYLCGR+
Sbjct: 449  RFLRVTFMDEGLQRMNSNVLNYYVAPIVRDITSNSFPQKTRIFKRVRSILTEGFYLCGRR 508

Query: 1443 YSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATV 1622
            YSFLAFS+NQLRD+SAWFF+E++N  V ++K+WMGKFTNRNIAKCAARMGQCFSSTYAT+
Sbjct: 509  YSFLAFSANQLRDQSAWFFSEERNISVLDVKSWMGKFTNRNIAKCAARMGQCFSSTYATI 568

Query: 1623 EVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGV 1802
            EVP  +VNS LPDIERNGYVFSDGIG+++  LA EVAEKL++  DPPCAYQIRYAG KGV
Sbjct: 569  EVPPEEVNSDLPDIERNGYVFSDGIGIITPDLAREVAEKLKLDIDPPCAYQIRYAGCKGV 628

Query: 1803 IARWPNIKDGTHLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIF 1982
            +A WP   DG  L LR SM KF+SNHT LEICSWTRFQPGFLNRQI+TLLS L V D +F
Sbjct: 629  VACWPGKGDGVRLSLRPSMNKFQSNHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDAVF 688

Query: 1983 WRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIR 2162
            W+MQETMVS+L++M  ++D+AFDV+T SC DQG+ AAIMLSAGFKP  EPHLRGMLT +R
Sbjct: 689  WKMQETMVSKLNQMFVNSDVAFDVLTASCADQGNVAAIMLSAGFKPDREPHLRGMLTCVR 748

Query: 2163 AAQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENE 2342
            AAQL DLREK RIFVPSGRWLMGCLDELG+LE GQCFIQVS  SLE+ F+KHG++FSE E
Sbjct: 749  AAQLWDLREKTRIFVPSGRWLMGCLDELGMLEQGQCFIQVSNSSLEKCFMKHGAKFSEAE 808

Query: 2343 KKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDL 2522
            K LQV+KG V IAKNPCLHPGDVR+LEAVD P LHHL+DCLVFPQKG+RPHTNEASGSDL
Sbjct: 809  KNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVPGLHHLYDCLVFPQKGERPHTNEASGSDL 868

Query: 2523 DGELYFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTIC 2702
            DG+LYFVTWDENLIPPSKRSWIPM Y A EA+ L R V H DIIEFF KNMVN++LG IC
Sbjct: 869  DGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKLLARPVNHQDIIEFFAKNMVNDNLGAIC 928

Query: 2703 NAHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQ 2882
            NAHVVHADLSEYGA D+ C+ LAELAA AVDFPKTGK+V+MPP LKPK+YPDFMGKEE Q
Sbjct: 929  NAHVVHADLSEYGATDKNCLTLAELAATAVDFPKTGKVVSMPPYLKPKMYPDFMGKEEYQ 988

Query: 2883 TYHSNKILGKLYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCS 3062
            +Y S KILG+LYR+IKDA D     SSE      +I YD DLE+ G+  +I+DAW+ KCS
Sbjct: 989  SYKSEKILGRLYRQIKDAYDEDVAASSELNLVPGDIPYDSDLEVVGASDYISDAWDQKCS 1048

Query: 3063 YDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFES 3242
            YDGQL GLL QYKV REEE+VTGHIWSMPKYSS+KQGELK+RLKH+Y++L+KEFR++FE 
Sbjct: 1049 YDGQLNGLLSQYKVKREEEVVTGHIWSMPKYSSRKQGELKDRLKHSYNSLKKEFRQIFEK 1108

Query: 3243 MDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAAD 3422
            MD EF+QL D EKN +YE+KASAWYQV YH  W+KKS ELQ  D AG +VMLSFAWIAAD
Sbjct: 1109 MDLEFEQLEDGEKNKLYEQKASAWYQVVYHPHWVKKSLELQDPDGAGTSVMLSFAWIAAD 1168

Query: 3423 YLARIKIRRRRTENDISTKPIDSLGRYLADKI 3518
            YLARIKIR R T N  S KP++SL +YLAD++
Sbjct: 1169 YLARIKIRHRETGNVDSAKPVNSLAKYLADRM 1200


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score = 1712 bits (4433), Expect = 0.0
 Identities = 826/1172 (70%), Positives = 970/1172 (82%), Gaps = 2/1172 (0%)
 Frame = +3

Query: 9    LMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI-DTESIQRKDDYEKVEPHAFVHFAVKHS 185
            L++Y E  IG+VWRCRLKTS TPP+SYPN+EI D   I R +DY +VEPHAFVHFA+  S
Sbjct: 29   LLEYLEREIGLVWRCRLKTSWTPPESYPNFEITDITKITRTEDYRRVEPHAFVHFALPQS 88

Query: 186  ATSALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEF 365
            AT A+DAA R EL L  K LK SLGPENP  LN++RR T P+KLS V VE+G + SR+EF
Sbjct: 89   ATCAIDAADRCELFLNNKGLKASLGPENPFTLNQRRRKTTPFKLSGVGVEIGTLVSRDEF 148

Query: 366  VVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIK 545
             VGWRGP TGVDFLVDPF+G C+  F+++TAFSFK   + AVIKC+F++EFL R+I EIK
Sbjct: 149  FVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSFKSTAEHAVIKCDFKVEFLVRDINEIK 208

Query: 546  HYRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCN 725
             Y +   L++LLQLAS+P ++YRTADDDI+ SVPFDLLDDDDPWIRTTDFT SGAIGRC+
Sbjct: 209  QYTETSCLVLLLQLASAPRVWYRTADDDIEVSVPFDLLDDDDPWIRTTDFTASGAIGRCH 268

Query: 726  TYRISVRPRYGPYLTKALEYLRKRRVPVIYESPRHRLLVQDEPDFGVPMLDPFFCIQYKE 905
            +YR+S+ PR+GP L KA+++L++RRV   Y   R  + ++DEPDFG+PM DPFFCI +KE
Sbjct: 269  SYRVSIPPRHGPKLRKAVDFLKERRVQEEYL--RRPIRIRDEPDFGMPMTDPFFCIHHKE 326

Query: 906  GISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKA 1085
            GI+F VLFLVNAVMHKGI NQHQ+S  FFDLLR++P EVN  ALKH+  Y+ PV+DA+K 
Sbjct: 327  GIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQPTEVNVAALKHIYPYRRPVFDAYKK 386

Query: 1086 LELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADR 1265
            L++ Q+WLL NPK  +  ++++DI E+RRL+ITP KAYCLPPEVELSNRVLR Y+++ADR
Sbjct: 387  LKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADR 446

Query: 1266 FLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKY 1445
            FLRVTFMDE + T+N N L Y+  P+ R ITS S PQ+T +FKRV+ IL  GFYLCGR+Y
Sbjct: 447  FLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYSFPQKTRIFKRVRSILTEGFYLCGRRY 506

Query: 1446 SFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVE 1625
            SFLAFSSNQLRDRSAWFFAED+N  V  IK+WMGKFTN+NIAKCAARMGQCFSSTYAT+E
Sbjct: 507  SFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMGKFTNKNIAKCAARMGQCFSSTYATIE 566

Query: 1626 VPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVI 1805
            VP  +VNS LPDI+RNGY FSDGIGM++  LA EVAEKL+   DPPCAYQIRYAG KGV+
Sbjct: 567  VPPEEVNSDLPDIKRNGYDFSDGIGMITPDLAREVAEKLKFDFDPPCAYQIRYAGCKGVV 626

Query: 1806 ARWPNIKDGTHLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFW 1985
            A WP   DG  L LR+SM KF+SNHTILEICSWTRFQPGFLNRQI+TLLSAL V D +FW
Sbjct: 627  ACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWTRFQPGFLNRQIITLLSALNVPDAVFW 686

Query: 1986 RMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRA 2165
            +MQE MVS+L++ML D+D+AFDV+T SC +QG+ AAIMLSAGFKPQ EPHLRGMLT +RA
Sbjct: 687  KMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNVAAIMLSAGFKPQKEPHLRGMLTCVRA 746

Query: 2166 AQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEK 2345
            AQL  LREKARIFVPSGRWLMGCLDELGVLE GQCFIQVS   LE  FVKHGS+FSE +K
Sbjct: 747  AQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSNSYLENCFVKHGSKFSETKK 806

Query: 2346 KLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLD 2525
             LQVVKG V IAKNPCLHPGD+RILEAVDAP LHHL+DCLVFPQKG+RPH NEASGSDLD
Sbjct: 807  NLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQKGERPHANEASGSDLD 866

Query: 2526 GELYFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICN 2705
            G+LYFVTWDENLIPPSKRSWIPM Y A EA++L R V H DI+EFF KNM NE+LG ICN
Sbjct: 867  GDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLTRPVNHQDIVEFFAKNMANENLGAICN 926

Query: 2706 AHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQT 2885
            AHVV ADLSEYGALDEKC+ LAELAA AVDFPKTGKIV+MP +LKPK+YPDFMGKEE Q+
Sbjct: 927  AHVVRADLSEYGALDEKCLTLAELAATAVDFPKTGKIVSMPSDLKPKIYPDFMGKEEHQS 986

Query: 2886 YHSNKILGKLYRKIKDA-NDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCS 3062
            Y S KILG+LYR+IKDA +D     SSE  F   +I YD DLE+ G+  FI+DAW+ KCS
Sbjct: 987  YKSKKILGRLYRQIKDAYDDDDVAASSELNFVRGDIPYDLDLEVLGATDFISDAWDRKCS 1046

Query: 3063 YDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFES 3242
            YDGQL GLL QYKV REEE+VTGH+WSMPK SS+KQG+LKERLKH+Y+ L++EFR+VFE 
Sbjct: 1047 YDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSRKQGDLKERLKHSYNCLKREFRQVFEK 1106

Query: 3243 MDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAAD 3422
            MD +F QL DDEKN++YE+KASAWYQVTYH  W++KS ELQ  D AG +VMLSFAWIAAD
Sbjct: 1107 MDLDFGQLDDDEKNMLYERKASAWYQVTYHPHWIQKSLELQDSDGAGISVMLSFAWIAAD 1166

Query: 3423 YLARIKIRRRRTENDISTKPIDSLGRYLADKI 3518
            YLARIKIR  R  N  S KP++SL +YLAD++
Sbjct: 1167 YLARIKIRHSRIGNVDSAKPVNSLAKYLADRM 1198


>gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
          Length = 1197

 Score = 1696 bits (4393), Expect = 0.0
 Identities = 822/1171 (70%), Positives = 963/1171 (82%), Gaps = 1/1171 (0%)
 Frame = +3

Query: 9    LMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI-DTESIQRKDDYEKVEPHAFVHFAVKHS 185
            LM+YF+N +G+VWRCRLKTS TPP+SYPN+EI D+  IQR DDY+KVEPHAFVHFA   +
Sbjct: 29   LMEYFDNEVGVVWRCRLKTSWTPPESYPNFEILDSTVIQRTDDYKKVEPHAFVHFASPLT 88

Query: 186  ATSALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEF 365
            AT A+DAAGR EL+   + LKVSLGPENP++LN +RR T P+KLSDV +++G M SR+EF
Sbjct: 89   ATWAVDAAGRTELVFNNQLLKVSLGPENPYYLNRRRRNTTPFKLSDVCLDIGGMVSRDEF 148

Query: 366  VVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIK 545
             VGWRGP  GVDFLVDPF+G CK  F++DTAFSFKG  + AVIKC+F++EFL R+I EIK
Sbjct: 149  FVGWRGPPFGVDFLVDPFDGTCKFCFSRDTAFSFKGTTEYAVIKCDFKVEFLVRDINEIK 208

Query: 546  HYRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCN 725
             Y +   L+V LQLASSP ++YRTADD+I+ESVPFDLLDDDD WIRTTDFTPSGAIGRCN
Sbjct: 209  QYTEPSGLVVFLQLASSPRVWYRTADDEIEESVPFDLLDDDDQWIRTTDFTPSGAIGRCN 268

Query: 726  TYRISVRPRYGPYLTKALEYLRKRRVPVIYESPRHRLLVQDEPDFGVPMLDPFFCIQYKE 905
            TYR+ +RPR+G  L KAL+YLR++RVP+ Y   R  L + DEPDFG  M DPF+CI YKE
Sbjct: 269  TYRVVIRPRHGAKLKKALDYLREQRVPMDYV--RWPLRISDEPDFGRSMSDPFYCIDYKE 326

Query: 906  GISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKA 1085
            GI F+++FLVNAVMHKGI NQHQ+SE FF+LLR +P EVN  ALKH+ SY+ PV+DA+K 
Sbjct: 327  GIPFEIMFLVNAVMHKGIFNQHQLSEDFFNLLRDQPREVNVAALKHIYSYRRPVFDAYKR 386

Query: 1086 LELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADR 1265
            L+ V  WLL NP L + P++++DIVE+RRL+ITP KA+CL PEVELSNRVLR Y+ +ADR
Sbjct: 387  LKTVHDWLLRNPILFKSPKQLDDIVEIRRLVITPTKAHCLLPEVELSNRVLRKYKEVADR 446

Query: 1266 FLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKY 1445
            FLRVTFMDE M T+N NVLTYY   + R +TS    Q+T +FKRV+ IL +GFYLCGRKY
Sbjct: 447  FLRVTFMDEGMQTINANVLTYYAASIVRDVTSTFFSQKTGVFKRVRSILTDGFYLCGRKY 506

Query: 1446 SFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVE 1625
            SFLAFS+NQLRD SAWFFAED  T V  I  WMGKFTNRNIAKCAARMGQCFSSTYATVE
Sbjct: 507  SFLAFSANQLRDSSAWFFAEDGKTSVLQILRWMGKFTNRNIAKCAARMGQCFSSTYATVE 566

Query: 1626 VPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVI 1805
            VPST+VN  LPDIERNGYVFSDGIG ++  LA EVA+KL++  +PPCAYQIRYAG KGV+
Sbjct: 567  VPSTEVNPFLPDIERNGYVFSDGIGKITPDLAKEVAQKLKLDLNPPCAYQIRYAGCKGVV 626

Query: 1806 ARWPNIKDGTHLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFW 1985
            A WP   DG  L LR SM KF S+HT LEICSWTRFQPGFLNRQI+TLLS   V D +FW
Sbjct: 627  ACWPEEGDGVRLSLRCSMNKFFSDHTTLEICSWTRFQPGFLNRQIITLLSTQYVPDEVFW 686

Query: 1986 RMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRA 2165
             MQ TMVS+L+++L DTD+AF+V+T SC++QG+ AAIMLSAGFKPQTEPHLRG+LT +RA
Sbjct: 687  EMQNTMVSKLNKILVDTDVAFEVLTSSCSEQGNAAAIMLSAGFKPQTEPHLRGILTCVRA 746

Query: 2166 AQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEK 2345
            +QL  LREKARIFVPSGRWLMG LDELGVLE GQCFIQVS PS+E  F+KHGSRF+E +K
Sbjct: 747  SQLCGLREKARIFVPSGRWLMGVLDELGVLEQGQCFIQVSNPSVENCFLKHGSRFAETKK 806

Query: 2346 KLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLD 2525
              +V++GLV IAKNPCLHPGD+RILEAVDAP LHHL+DCLVFPQKG+RPHTNEASGSDLD
Sbjct: 807  NFEVIQGLVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQKGERPHTNEASGSDLD 866

Query: 2526 GELYFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICN 2705
            G+LYFVTW++ LIPP K+SW PM Y  GE +E+ R+V H DII+FF KNMVNE LGTICN
Sbjct: 867  GDLYFVTWEDLLIPPGKKSWPPMQYDPGETKEIQREVNHKDIIDFFAKNMVNEHLGTICN 926

Query: 2706 AHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQT 2885
            AHVVHADLSEYGALDEKCI LAELAA AVDFPKTGKIV+MP  LKPKLYPDFMGKEE Q+
Sbjct: 927  AHVVHADLSEYGALDEKCIHLAELAATAVDFPKTGKIVSMPANLKPKLYPDFMGKEEYQS 986

Query: 2886 YHSNKILGKLYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCSY 3065
            Y S KILG+LYR IKD  D    ESSE      +I YD DLE+TGS  +I DAW  KCSY
Sbjct: 987  YKSRKILGRLYRHIKDVYDEDLSESSEINLDSPDINYDTDLEVTGSADYIDDAWVKKCSY 1046

Query: 3066 DGQLIGLLGQYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFESM 3245
            D QLIGLLGQYKV REEE+VTGHIWSMPKY+S+K G+LKE+L H+Y  LRKEFR++FESM
Sbjct: 1047 DRQLIGLLGQYKVKREEEVVTGHIWSMPKYTSRKLGDLKEKLGHSYGALRKEFRQIFESM 1106

Query: 3246 DPEFDQLSDDEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAADY 3425
            D E +QL++DE+N +YE+KASAWYQVTYH  W++K  ELQ  D A   VMLSFAWIAADY
Sbjct: 1107 DSEIEQLNEDERNELYERKASAWYQVTYHPKWVEKKLELQKSDGADPVVMLSFAWIAADY 1166

Query: 3426 LARIKIRRRRTENDISTKPIDSLGRYLADKI 3518
            LARIKIR + T N   +KP++SL +YLADKI
Sbjct: 1167 LARIKIRSQGTGNVDFSKPVNSLVKYLADKI 1197


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
            sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
            sinensis]
          Length = 1197

 Score = 1657 bits (4291), Expect = 0.0
 Identities = 809/1172 (69%), Positives = 958/1172 (81%), Gaps = 2/1172 (0%)
 Frame = +3

Query: 9    LMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI-DTESIQRKDDYEKVEPHAFVHFAVKHS 185
            L+ Y EN +G VWRCRLKTS TP +SYP++ + +T  +++ DDYEKVEPHAFVHFA+   
Sbjct: 29   LVKYLENEVGGVWRCRLKTSCTPSESYPDFSVTNTAEVRKTDDYEKVEPHAFVHFAMPTY 88

Query: 186  ATSALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEF 365
             T A+DAAGR EL L G+ LKVSLGPENP  LN++ RT+ P+KL DV VE+G + SR+EF
Sbjct: 89   VTRAVDAAGRTELFLNGQALKVSLGPENPFRLNQRGRTSTPFKLPDVCVEIGTLVSRDEF 148

Query: 366  VVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIK 545
             V WRGP +G DFLVDPF+G CK  FT+D AF+ K   + AVIKC F++EFL REI  +K
Sbjct: 149  FVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCEFKVEFLVREINLVK 208

Query: 546  HYRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCN 725
             Y +F  + +LLQLASSP ++YRTADDDI   VPFD+LDDDDPWIRTTDFTPSGAIGRCN
Sbjct: 209  QYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSGAIGRCN 268

Query: 726  TYRISVRPRYGPYLTKALEYLRKRRVPVIYESPRHRLLVQDEPDFGVPMLDPFFCIQYKE 905
            +YRIS+  R+   L+K + YL +RRV V  +S    + +++EPDF VPM DPFFCI Y+E
Sbjct: 269  SYRISISSRHRGKLSKVITYLGERRVQV--DSLSRPITIREEPDFEVPMSDPFFCIHYEE 326

Query: 906  GISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKA 1085
            GISF+++FLVNAVMHKGIINQHQ+S+ FFDLLR +  EVN  ALKH+ SYK PV+DA K 
Sbjct: 327  GISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKR 386

Query: 1086 LELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADR 1265
            L+LVQ+WLL +P+L + P++++DIVEVRRL+ITP KAYCLPPEVELSNRVLR Y+++ADR
Sbjct: 387  LKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADR 446

Query: 1266 FLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKY 1445
            FLRVTFMDE + T+N NVL+Y++ P+ R IT NS  Q+T +FKRV+ IL+ GFYLCGRK+
Sbjct: 447  FLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKF 506

Query: 1446 SFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVE 1625
            SFLAFSS+QLRD SAWFF+ED  T V +IK WMG+FT++NIAKCAARMGQCFSSTYATVE
Sbjct: 507  SFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVE 566

Query: 1626 VPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPP-CAYQIRYAGYKGV 1802
            VP T+V+ +LPDI+RNGYVFSDGIG ++  LA+EVA+KL++  +PP CAYQIRYAG KGV
Sbjct: 567  VPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGV 626

Query: 1803 IARWPNIKDGTHLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIF 1982
            +A WP   DG  + LR SM KF+S+HT LEICSWTRFQPGFLNRQI+TLLS L V D +F
Sbjct: 627  VACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMF 686

Query: 1983 WRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIR 2162
            W MQ++M+S+L++ML D+D+AF+V+T +C +QG+TAAIMLSAGF PQTEPHLRGMLT IR
Sbjct: 687  WSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIR 746

Query: 2163 AAQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENE 2342
            AAQL  LREKARIFVP+GRWLMGCLDELGVLE GQCFIQVS P L   F KHGSRF+E  
Sbjct: 747  AAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAET- 805

Query: 2343 KKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDL 2522
            KKLQV+KG V IAKNPCLHPGD+RILEAVD PELHHL+DCLVFPQKGDRPHTNEASGSDL
Sbjct: 806  KKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDL 865

Query: 2523 DGELYFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTIC 2702
            DG+LYFVTWDENLIPPSK+SW PM+Y A EA+ L R V   DIIEFF K+MVNE+LGTIC
Sbjct: 866  DGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTIC 925

Query: 2703 NAHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQ 2882
            NAHVVHAD SEYGALDE CI LAELAA AVDFPKTGKIVTMP  LKPKLYPDFMGKE  Q
Sbjct: 926  NAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQ 985

Query: 2883 TYHSNKILGKLYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCS 3062
            +Y SNKILG+LYR+ KDA D     SSE      +I YD DLE+  S  FIADAWN KCS
Sbjct: 986  SYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCS 1045

Query: 3063 YDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFES 3242
            YDGQL GLL QYKVNREEELVTGHIWSMPKY+S+KQGELKERLKH+YS LRKEFR+VFE 
Sbjct: 1046 YDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEK 1105

Query: 3243 MDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAAD 3422
            MD + + LS+DEKN ++E+KASAWYQVTYH  W+KKS +LQ  D A   V+LSFAWIA D
Sbjct: 1106 MDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIAND 1165

Query: 3423 YLARIKIRRRRTENDISTKPIDSLGRYLADKI 3518
            YLARIKIR R   N  ++KP++ L RY+AD+I
Sbjct: 1166 YLARIKIRCREMANIDTSKPVNYLARYVADRI 1197


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
            vesca]
          Length = 1197

 Score = 1657 bits (4290), Expect = 0.0
 Identities = 800/1171 (68%), Positives = 939/1171 (80%), Gaps = 1/1171 (0%)
 Frame = +3

Query: 9    LMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI-DTESIQRKDDYEKVEPHAFVHFAVKHS 185
            L+ Y E+ IG+V+RCRLKTS TPP+S PN+EI D   I+  DDY KVEPHAFVHFA   S
Sbjct: 29   LVSYLEDEIGLVFRCRLKTSWTPPESVPNFEISDAADIETTDDYRKVEPHAFVHFASPES 88

Query: 186  ATSALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEF 365
             T+ +DA GR +L    + LK SLGPEN  ++N++RRT IP+KL+DV +E+G +   +EF
Sbjct: 89   VTAVMDAVGRCQLFFNNQALKASLGPENLFNMNKRRRTKIPFKLADVRLEIGSLVRLDEF 148

Query: 366  VVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIK 545
             V W+GP  GVDF+VDPF+G CK  F +DTAFSFKG  K AVI C+F+ EF  REI E K
Sbjct: 149  FVAWKGPDHGVDFVVDPFDGTCKFCFRRDTAFSFKGLNKHAVITCDFKAEFQVREIGEFK 208

Query: 546  HYRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCN 725
            HY +    ++LL+L SSP + YRTADDDI +SV FDLLDDDDPWIRTTDFTP+GAIGRCN
Sbjct: 209  HYTEPLYHVLLLRLVSSPWVSYRTADDDIDQSVLFDLLDDDDPWIRTTDFTPTGAIGRCN 268

Query: 726  TYRISVRPRYGPYLTKALEYLRKRRVPVIYESPRHRLLVQDEPDFGVPMLDPFFCIQYKE 905
             YR+ + PR+G  L KA+ YL++RRV  ++     R  +QDEP FG PM D  F I Y++
Sbjct: 269  YYRVLIPPRHGAKLKKAMIYLKERRVQELFIKKPPR--IQDEPGFGNPMSDALFSIHYQK 326

Query: 906  GISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKA 1085
             ISF +LFLVNAVMHKGI+NQHQ+SE FFDLLR++PEE+N  ALKH+CSYKHPV+DA K 
Sbjct: 327  NISFDILFLVNAVMHKGILNQHQLSESFFDLLRNQPEEINVAALKHLCSYKHPVFDASKR 386

Query: 1086 LELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADR 1265
            L+LVQ+WLL NPKL++ P+ ++DI EVRRL+ITP KAYCLPPEVELSNRVLR Y+ +ADR
Sbjct: 387  LKLVQEWLLRNPKLIKNPKRLDDIAEVRRLVITPTKAYCLPPEVELSNRVLRKYKEVADR 446

Query: 1266 FLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKY 1445
            FLRVTFMDE M T+N NV+  YV P+ + IT N+ PQ+T ++ R++ IL NGF+LCGRKY
Sbjct: 447  FLRVTFMDEGMQTMNSNVMNSYVAPIVKEITENTFPQKTKVYVRIRAILMNGFHLCGRKY 506

Query: 1446 SFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVE 1625
            SFLAFSSNQLRDRSAWFFAEDK   +  IKNWMG+FTNRN+AKCAARMGQCFSSTYATVE
Sbjct: 507  SFLAFSSNQLRDRSAWFFAEDKTISIQGIKNWMGRFTNRNVAKCAARMGQCFSSTYATVE 566

Query: 1626 VPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVI 1805
            VPSTQVN +LPDIERNGYVFSDGIG ++  LA+EVAEKL++  DPP AYQIRY G KGV+
Sbjct: 567  VPSTQVNHELPDIERNGYVFSDGIGRITPDLAMEVAEKLKLDRDPPSAYQIRYGGCKGVV 626

Query: 1806 ARWPNIKDGTHLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFW 1985
            A WP+  DG  L LR SM KF S+HT LEICSWTR QPGFLNRQI+TLLSAL V D IFW
Sbjct: 627  ACWPSTGDGFRLSLRRSMNKFASDHTTLEICSWTRLQPGFLNRQIITLLSALNVPDEIFW 686

Query: 1986 RMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRA 2165
             MQETMVS+L +ML DTD+AFDV+T SC +QG++AAIMLSAGFKPQTEPHLRGMLT I+A
Sbjct: 687  TMQETMVSKLKQMLVDTDVAFDVLTASCAEQGNSAAIMLSAGFKPQTEPHLRGMLTCIQA 746

Query: 2166 AQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEK 2345
            AQL  LREK RIFVPSGRWLMGCLDELGVLE GQCF+QVS PSLE  F KHGSRF + +K
Sbjct: 747  AQLWGLREKTRIFVPSGRWLMGCLDELGVLEQGQCFVQVSTPSLENCFAKHGSRFDQTDK 806

Query: 2346 KLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLD 2525
             LQV+KG V +AKNPCLHPGD+RILEAVDAP LHHLHDCLVFPQKG RPHT+EASGSDLD
Sbjct: 807  NLQVIKGFVVVAKNPCLHPGDIRILEAVDAPGLHHLHDCLVFPQKGHRPHTDEASGSDLD 866

Query: 2526 GELYFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICN 2705
            G+LYFVTWDENLIPP K+SW PM+Y   EA+   R V   D+IEFF +NMVNE+LG ICN
Sbjct: 867  GDLYFVTWDENLIPPRKKSWQPMEYEPAEAKLSGRSVTSQDLIEFFVRNMVNENLGAICN 926

Query: 2706 AHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQT 2885
            AHVVH+D SEYGA DE C+KLAELAA+AVDFPKTGKIVTMPP LKPKLYPDFMGK++ Q+
Sbjct: 927  AHVVHSDRSEYGAFDENCLKLAELAAVAVDFPKTGKIVTMPPHLKPKLYPDFMGKQDYQS 986

Query: 2886 YHSNKILGKLYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCSY 3065
            Y SNKILG+LYRKI DA D     SSEQ     ++ YD DLE+  +  FIADAW  KCSY
Sbjct: 987  YKSNKILGRLYRKICDAYDEDVANSSEQNHVPSDVKYDMDLEVPKAADFIADAWERKCSY 1046

Query: 3066 DGQLIGLLGQYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFESM 3245
            D QL GL+ QYK+ REEE+VTGH+WSMPKY+S+KQGEL+ERLKH+YS L+KEFR+ FE M
Sbjct: 1047 DSQLRGLMTQYKIMREEEIVTGHVWSMPKYTSRKQGELQERLKHSYSALKKEFRQFFEKM 1106

Query: 3246 DPEFDQLSDDEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAADY 3425
            D  F+ L DD+KN  YE+KASAWYQVTYH  W+KKS +L   D  G  VMLSFAWIAADY
Sbjct: 1107 DTGFESLIDDQKNSFYEQKASAWYQVTYHPDWVKKSLDLHGPDGPGDVVMLSFAWIAADY 1166

Query: 3426 LARIKIRRRRTENDISTKPIDSLGRYLADKI 3518
            LARIKI+RR   N    KPI+ L +YLAD+I
Sbjct: 1167 LARIKIKRREVSNIDPKKPINILTKYLADRI 1197


>gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score = 1657 bits (4290), Expect = 0.0
 Identities = 802/1173 (68%), Positives = 953/1173 (81%), Gaps = 3/1173 (0%)
 Frame = +3

Query: 9    LMDYFENSIGMVWRCRLKTSSTPPDSYPNYEIDTESIQRKDDYEKVEPHAFVHFAVKHSA 188
            L+ Y E+ IG+V+RCRLKTS TPP+S+PN+EI+T  ++R DDY +VEPHAFVHF    S 
Sbjct: 29   LVTYLEDEIGLVYRCRLKTSWTPPESFPNFEINTADVKRTDDYSRVEPHAFVHFVSPDSV 88

Query: 189  TSALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEFV 368
            T A+DAAGR EL    +PLKVSLGPENP+ LN +RRT  P+KLSDV VE+G +  ++EF 
Sbjct: 89   TFAMDAAGRCELFFNNEPLKVSLGPENPYFLNRRRRTKTPFKLSDVHVEIGSLVRQDEFF 148

Query: 369  VGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIKH 548
              WRGP  GVDF+VDPF+G CK  FT DTAFSFKG  K AVIKC+F++EFL REI EIK 
Sbjct: 149  ASWRGPPYGVDFIVDPFDGTCKFCFTMDTAFSFKGTKKHAVIKCDFKVEFLVREIAEIKQ 208

Query: 549  YRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCNT 728
            Y D   L++LL+L SSP + YRTADDDI +SVPFDLLDDDDPWIRTTDFTPSGAIGRCN+
Sbjct: 209  YTDTSYLVILLRLTSSPWVSYRTADDDIDQSVPFDLLDDDDPWIRTTDFTPSGAIGRCNS 268

Query: 729  YRISVRPRYGPYLTKALEYLRKRRVP--VIYESPRHRLLVQDEPDFGVPMLDPFFCIQYK 902
            YR+ + PR+G  L KA+ YLR+RRV    I   P+    +QDEPDFG+   +PFF IQY+
Sbjct: 269  YRVLIPPRHGAKLKKAMNYLRERRVKEVCIKWPPK----IQDEPDFGMSNTEPFFSIQYE 324

Query: 903  EGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFK 1082
            EGISF+++FLVNAVMHKG +NQHQ+S+ FF LLRS+P+E+N  ALKH+CSY+ PV+DA +
Sbjct: 325  EGISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLRSQPKEINVAALKHLCSYRSPVFDACE 384

Query: 1083 ALELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIAD 1262
             L++VQ WLL NPKL++ P+ ++DI EVRRL+ITP KAYCLPPEVELSNRVLR Y+ +AD
Sbjct: 385  RLKVVQDWLLKNPKLVKDPKRLDDIAEVRRLVITPTKAYCLPPEVELSNRVLRKYKEVAD 444

Query: 1263 RFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRK 1442
            RFLRVTFMDE M  +N NVL YYV P+ + ITSNS  Q+T +FKR + ILN+GFYLCGRK
Sbjct: 445  RFLRVTFMDEGMQKINSNVLNYYVAPIVKEITSNSFLQKTNVFKRFRTILNDGFYLCGRK 504

Query: 1443 YSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATV 1622
            Y+FLAFSSNQLRDRSAWFFAE  N  V  I +WMGKF N+N+AKCAARMGQCFSSTYATV
Sbjct: 505  YTFLAFSSNQLRDRSAWFFAECVNISVGKITSWMGKFNNKNVAKCAARMGQCFSSTYATV 564

Query: 1623 EVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGV 1802
            EV S++VN  +PDI+RNGYVFSDGIGM++  LA+EVAEKL++  +PPCAYQIR+AG KGV
Sbjct: 565  EVTSSEVND-IPDIKRNGYVFSDGIGMITPDLALEVAEKLKLDRNPPCAYQIRFAGCKGV 623

Query: 1803 IARWPNIKDGTHLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIF 1982
            +A WP+  DG  L LRTSM KFES HT LEICSWTR+QPGFLNRQI+TLLS L VED IF
Sbjct: 624  VACWPSKGDGFRLSLRTSMNKFESKHTTLEICSWTRYQPGFLNRQIITLLSTLNVEDEIF 683

Query: 1983 WRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIR 2162
            WRMQE MV +L++ML DTD+AFDV+T SC +QG+ AAIMLSAGFKPQTEPHLRGMLT I+
Sbjct: 684  WRMQEKMVLKLNQMLVDTDVAFDVLTASCAEQGNAAAIMLSAGFKPQTEPHLRGMLTCIQ 743

Query: 2163 AAQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENE 2342
            AAQL  LREKARIFV SGRWLMG LDELGVLE GQCF+QVS P LE  F KHGS F++ E
Sbjct: 744  AAQLWGLREKARIFVHSGRWLMGVLDELGVLEQGQCFVQVSTPLLESCFAKHGSSFAQIE 803

Query: 2343 KKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDL 2522
            + LQV+KG V IAKNPCLHPGD+RILEAVDAP LHHL+DCLVFPQKGDRPHT+EASGSDL
Sbjct: 804  RNLQVIKGHVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQKGDRPHTDEASGSDL 863

Query: 2523 DGELYFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTIC 2702
            DG+LYFVTWDENLIPPSK+SW+PM Y   EA+   R V   DII+FF KNM NE+LG IC
Sbjct: 864  DGDLYFVTWDENLIPPSKKSWMPMQYDPAEAKLQGRPVTQQDIIDFFVKNMTNENLGPIC 923

Query: 2703 NAHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQ 2882
            NAHVVHAD S+YGALD  C+KLAELAA+AVDFPKTGKIV++P  LKP+LYPDF+GKE+ Q
Sbjct: 924  NAHVVHADRSDYGALDVNCLKLAELAALAVDFPKTGKIVSLPQHLKPRLYPDFLGKEDNQ 983

Query: 2883 TYHSNKILGKLYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCS 3062
            +Y S KILG+LYRK++DA D     SSE  +   +I YD DLE+ G+  F+ DAW  KCS
Sbjct: 984  SYKSTKILGRLYRKVRDAYDEDAATSSELHYFPSDIPYDMDLEVPGAADFVFDAWEKKCS 1043

Query: 3063 YDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFES 3242
            YDGQL GL+GQYKV REEE+VTGH+WS+PK +SKKQGELKERL H+Y+ L+KEFR++FE+
Sbjct: 1044 YDGQLKGLMGQYKVKREEEIVTGHVWSIPKSNSKKQGELKERLSHSYNALKKEFRQMFEN 1103

Query: 3243 MDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGK-TVMLSFAWIAA 3419
            +D   + L+DDEKN++ EKKASAWYQVTYH  W+K+S  LQ  D  G   VMLSFAWIAA
Sbjct: 1104 LDSNLEALTDDEKNLLCEKKASAWYQVTYHPKWVKQSPPLQEPDGPGDVVVMLSFAWIAA 1163

Query: 3420 DYLARIKIRRRRTENDISTKPIDSLGRYLADKI 3518
            DYLARIKI+    E+  STKPI+SL RYLAD+I
Sbjct: 1164 DYLARIKIKCHGVEHIDSTKPINSLKRYLADRI 1196


>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
            gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
            6 [Gossypium hirsutum]
          Length = 1196

 Score = 1654 bits (4282), Expect = 0.0
 Identities = 813/1171 (69%), Positives = 953/1171 (81%), Gaps = 1/1171 (0%)
 Frame = +3

Query: 9    LMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI-DTESIQRKDDYEKVEPHAFVHFAVKHS 185
            LM Y EN +G+VWRCRLKTS TPP+SYPN+EI DT  IQRKD+Y+KVEPHAFVHFA   +
Sbjct: 29   LMKYLENEVGLVWRCRLKTSWTPPESYPNFEITDTTVIQRKDNYKKVEPHAFVHFASPQA 88

Query: 186  ATSALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEF 365
             T A+DAAGR EL    + LKVSLGPENP++LN +RR T P+KL DV +E+G + S +EF
Sbjct: 89   VTWAVDAAGRTELAFNNQLLKVSLGPENPYYLNRRRRDTTPFKLPDVSLEIGTLASCDEF 148

Query: 366  VVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIK 545
            +VGWRGP +GV+FLVDPF+  CK  F++DTAFSFKG  + AVIKC+F++EFL REI E+K
Sbjct: 149  IVGWRGPPSGVEFLVDPFDCTCKFCFSRDTAFSFKGTNEHAVIKCDFKVEFLVREINEVK 208

Query: 546  HYRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCN 725
             Y +    +VLLQLASSP ++YRTADDD +++VPF LLDDDD WIRTTDFT SGAIGRCN
Sbjct: 209  QYSEPTGFVVLLQLASSPWVWYRTADDDFEKTVPFGLLDDDDQWIRTTDFTASGAIGRCN 268

Query: 726  TYRISVRPRYGPYLTKALEYLRKRRVPVIYESPRHRLLVQDEPDFGVPMLDPFFCIQYKE 905
            TYR+ VRPR+G  L KA++YLR+RRVPV  E  R +L ++DEPDFG  M D F+ I YKE
Sbjct: 269  TYRVLVRPRHGLKLKKAMDYLRERRVPV--EDLRSQLRIRDEPDFGRSMSDHFYYI-YKE 325

Query: 906  GISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKA 1085
            GI F+++FLVNAV+HKGI NQHQ+S  FF LLR++  EVN  ALKH+ SY+HPVYDA++ 
Sbjct: 326  GIPFEIMFLVNAVLHKGIFNQHQLSMDFFRLLRNQSMEVNVAALKHIYSYRHPVYDAYER 385

Query: 1086 LELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADR 1265
            L+ V  WLL NPKL + P +++DIVE+RRL+ITP KAYCL PEVELSNRVLR Y+++ADR
Sbjct: 386  LKDVHDWLLKNPKLFKSPPQLDDIVEIRRLVITPTKAYCLLPEVELSNRVLRKYKDVADR 445

Query: 1266 FLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKY 1445
            FLRVTFMDE M  +N NVLTYY   + R +TS S  Q+T +FKRVK IL +GFYLCGRKY
Sbjct: 446  FLRVTFMDEGMQIMNANVLTYYNAAIVRDVTSTSFSQKTGVFKRVKSILTDGFYLCGRKY 505

Query: 1446 SFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVE 1625
            SFLAFS+NQLRDR+AWFFAED    V  I  WMGKFTNRNIAKCAARMGQCFSSTYATVE
Sbjct: 506  SFLAFSANQLRDRAAWFFAEDGKINVLQIIGWMGKFTNRNIAKCAARMGQCFSSTYATVE 565

Query: 1626 VPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVI 1805
            VPS QVN  LPDI+RNGY FSDGIG ++  LA+EVA+KL++  +PPCAYQIRYAG KGV+
Sbjct: 566  VPSGQVNMHLPDIKRNGYDFSDGIGKITPDLAMEVAQKLKLDLNPPCAYQIRYAGCKGVV 625

Query: 1806 ARWPNIKDGTHLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFW 1985
            A WP   D   L LR+SM KF S+HT LEICSWTRFQPGFLNRQI+TLLS L V D +FW
Sbjct: 626  ACWPEEGDRIRLSLRSSMIKFFSHHTTLEICSWTRFQPGFLNRQIITLLSTLGVPDEVFW 685

Query: 1986 RMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRA 2165
             MQ +MVS+LD++L DTD AF+VV  SC +QG T AIMLSAGFKPQTEPHLRGMLT +RA
Sbjct: 686  GMQNSMVSKLDKVLVDTDAAFEVVISSCGEQGHTPAIMLSAGFKPQTEPHLRGMLTCVRA 745

Query: 2166 AQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEK 2345
            +QL  LREK+RIF+ SGRWLMG LDELGVLE GQCFIQVS PSL+  F+KHGSRF+E +K
Sbjct: 746  SQLWGLREKSRIFIHSGRWLMGVLDELGVLEQGQCFIQVSNPSLQNCFLKHGSRFAETKK 805

Query: 2346 KLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLD 2525
              +V+KGLV IAKNPCLHPGD+RILEAVDAP LHHL+DCLVFPQKG+RPHTNEASGSDLD
Sbjct: 806  NFEVIKGLVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQKGERPHTNEASGSDLD 865

Query: 2526 GELYFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICN 2705
            G+LYFVTW+E LIPPSK+S  PM Y     REL R V H DIIEFF+KNMVNE LG+ICN
Sbjct: 866  GDLYFVTWEEALIPPSKKSSQPMQYDLDAPRELNRSVTHKDIIEFFSKNMVNEHLGSICN 925

Query: 2706 AHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQT 2885
            AHVVH+DLSE+GA DEKCI LAELAAIAVDFPKTGKIV+MP +LKPKLYPDFMGKEE Q+
Sbjct: 926  AHVVHSDLSEHGASDEKCIHLAELAAIAVDFPKTGKIVSMPAQLKPKLYPDFMGKEEFQS 985

Query: 2886 YHSNKILGKLYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCSY 3065
            Y SNKILG+LYR IKDA D+   ESSE  F   +I YD DLEITGS  +I DAW  KCSY
Sbjct: 986  YKSNKILGRLYRYIKDAYDKDVSESSELNFGASDINYDADLEITGSADYITDAWAKKCSY 1045

Query: 3066 DGQLIGLLGQYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFESM 3245
            DGQLIGLL QYKV REEE+VTG IWSMPKY+SKK G+LKE+L H+Y +LRKEFR++FE+M
Sbjct: 1046 DGQLIGLLKQYKVKREEEVVTGQIWSMPKYASKKLGDLKEKLGHSYGSLRKEFRQLFENM 1105

Query: 3246 DPEFDQLSDDEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAADY 3425
            D EF+QL++DEKN +YE+KASAWYQVTYH  W++K  E Q  D     VMLSFAWIAADY
Sbjct: 1106 DSEFEQLNEDEKNKLYERKASAWYQVTYHPEWVQKKLEFQKPDGDEGVVMLSFAWIAADY 1165

Query: 3426 LARIKIRRRRTENDISTKPIDSLGRYLADKI 3518
            LARIK+R + TEN    KP++SL RYLAD+I
Sbjct: 1166 LARIKVRHQGTENLDFAKPVNSLVRYLADRI 1196


>gb|EPS62146.1| hypothetical protein M569_12646, partial [Genlisea aurea]
          Length = 1195

 Score = 1648 bits (4268), Expect = 0.0
 Identities = 811/1180 (68%), Positives = 945/1180 (80%), Gaps = 8/1180 (0%)
 Frame = +3

Query: 3    EMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEIDTESIQRKDDYEKVEPHAFVHFAVKH 182
            +ML+D+F+ +IG VWRCRLKTSS PPDSYPNY+ID   +Q  +DYE+ + HA+VHFA+  
Sbjct: 21   KMLVDFFQKNIGFVWRCRLKTSSLPPDSYPNYDIDISRVQGNNDYERAKRHAYVHFAIPK 80

Query: 183  SATSALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREE 362
             A  A DAA  G L +  K L+V LGP+NPH +NE+RRT   YKL DV VEVG M+S+ E
Sbjct: 81   CAKLAADAAASGRLTMGQKQLRVGLGPQNPHRMNERRRTISSYKLFDVSVEVGSMKSQNE 140

Query: 363  FVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEI 542
            F VGWRGP +GVDF+VDP+NG CK+QF +DTAFS   E +  V+KCNF+IEF PREIIEI
Sbjct: 141  FYVGWRGPSSGVDFIVDPYNGTCKIQFERDTAFSITDEDRLVVMKCNFKIEFTPREIIEI 200

Query: 543  KHYRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRC 722
            K YRDF SLI++LQL SSPLIYYRTADDDI+++VPFDLL+DDDPWIRTTDFT +GAIGRC
Sbjct: 201  KRYRDFYSLIIMLQLFSSPLIYYRTADDDIEDAVPFDLLEDDDPWIRTTDFTSTGAIGRC 260

Query: 723  NTYRISVRPRYGPYLTKALEYLRKRRVPVIYESPRHRLLVQDEPDFGVPMLDPFFCIQYK 902
            NTYRISVRP  GP L KAL+YLR RRV V  E     + V DEP FG  M DPFFCIQ  
Sbjct: 261  NTYRISVRPLSGPQLLKALDYLRLRRVKVFDEFKGKHIRVMDEPGFGTLMSDPFFCIQNV 320

Query: 903  EGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFK 1082
            +G+SFK+ FLVNAV+H GIIN HQM+E+FFDLLR++PEE+   AL H+   K PVYDA K
Sbjct: 321  KGLSFKITFLVNAVLHSGIINYHQMTEEFFDLLRTQPEELIVPALTHLSFSKRPVYDAVK 380

Query: 1083 ALELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIAD 1262
            AL+ VQKWLL NPKLLERP    D VEVRRLIITP +AYC+PPEVELSNRVLRNYR+++D
Sbjct: 381  ALKAVQKWLLGNPKLLERPMRNEDTVEVRRLIITPTRAYCIPPEVELSNRVLRNYRDLSD 440

Query: 1263 RFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRK 1442
            RFLRVTFMDEAM  LNKN+L +Y   + R   SN  PQ+T MFKR+KDIL +GFYLCG K
Sbjct: 441  RFLRVTFMDEAMQILNKNLLVFYPDRILREDNSNLIPQKTMMFKRIKDILMDGFYLCGMK 500

Query: 1443 YSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATV 1622
            YSFLA+S+ QLRDRSAWFFAED    V NIK WMGKFT+RN+AKCAARMGQCFSSTYATV
Sbjct: 501  YSFLAYSAGQLRDRSAWFFAEDSKIKVKNIKKWMGKFTDRNVAKCAARMGQCFSSTYATV 560

Query: 1623 EVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGV 1802
            EVP   VN KL +++RNGYVFSDGIG +S  LA EVA+KLQ+S DPP AYQIRY GYKGV
Sbjct: 561  EVPHGDVNFKLLEVKRNGYVFSDGIGTISPELASEVAKKLQLSADPPSAYQIRYGGYKGV 620

Query: 1803 IARWPNIKDG-THLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGI 1979
            IA WP +KDG + L LR SM+KFES H +LEICSWT+F PGFLNRQI+TLL+AL V D I
Sbjct: 621  IACWP-VKDGESRLSLRRSMKKFESEHAVLEICSWTKFLPGFLNRQIITLLTALGVPDDI 679

Query: 1980 FWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSI 2159
            FW MQETM+ +L+RM+ D  +AFDV+T SC + GSTAA+MLSAGF+PQTEPHLRGML+SI
Sbjct: 680  FWNMQETMIQKLNRMIGDAKIAFDVLTNSCAESGSTAAVMLSAGFRPQTEPHLRGMLSSI 739

Query: 2160 RAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSEN 2339
            RAAQ GDLREK RIFV SGRWLMGCLDE GVLE GQCFIQ S  SL   FVKHGS FSE 
Sbjct: 740  RAAQFGDLREKTRIFVSSGRWLMGCLDEAGVLEQGQCFIQASSFSLLNCFVKHGSSFSEI 799

Query: 2340 EKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSD 2519
             K L+V++GLV +AKNPCLHPGD+RILEAVDAPEL HLHDCLVFP+KG+RPHT+EASGSD
Sbjct: 800  SKSLKVIEGLVVVAKNPCLHPGDIRILEAVDAPELRHLHDCLVFPKKGERPHTDEASGSD 859

Query: 2520 LDGELYFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTI 2699
            LDG++YFVTWDENLIPPSK+SW PM+Y +   REL R V H DI+EFF++NMVN++LGTI
Sbjct: 860  LDGDVYFVTWDENLIPPSKQSWPPMEYQSVPVRELSRQVTHLDIVEFFSRNMVNDNLGTI 919

Query: 2700 CNAHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEEL 2879
            CNAHVVH+DLS+ GALDEKC+KLAELAA+AVDFPK G+ V MPPEL+P LYPDFMGKEE 
Sbjct: 920  CNAHVVHSDLSQLGALDEKCLKLAELAALAVDFPKNGRAVNMPPELRPALYPDFMGKEEF 979

Query: 2880 QTYHSNKILGKLYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKC 3059
            QTY S+KILGKLYRKI D      E   E    +  +  D DLE+ GS SF+ DAW CKC
Sbjct: 980  QTYKSSKILGKLYRKIVDLYSS--ETECESAVDVPPLDPDPDLEVEGSSSFLRDAWCCKC 1037

Query: 3060 SYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFE 3239
            SYD QL+GLLGQY+V +EEE+V+GHI+SMPKYSSKKQGE+K+RL++AY  LRKEFR VFE
Sbjct: 1038 SYDEQLLGLLGQYRVEKEEEVVSGHIYSMPKYSSKKQGEVKDRLRNAYHALRKEFRGVFE 1097

Query: 3240 SMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWLKKSK----ELQMVDDAG---KTVML 3398
            ++   FD    DEKN +YE+KASAWY+VTYHE W++K K     L  V D G      ML
Sbjct: 1098 NLGDVFD--DGDEKNAVYERKASAWYRVTYHEEWVEKWKGWRLALAGVGDEGTAPAAAML 1155

Query: 3399 SFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 3518
            SF WIAADYLARIKIRRRRT  +IS + +DSL RYL DKI
Sbjct: 1156 SFPWIAADYLARIKIRRRRTRGEISGEDVDSLARYLTDKI 1195


>ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
            max] gi|571449461|ref|XP_006578148.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
            max]
          Length = 1204

 Score = 1625 bits (4209), Expect = 0.0
 Identities = 795/1180 (67%), Positives = 953/1180 (80%), Gaps = 10/1180 (0%)
 Frame = +3

Query: 9    LMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI-DTESIQRKDDYEKVEPHAFVHFAVKHS 185
            L++Y E+ IG+V+RCRLKTS TPP+SYP ++I DT  I+R +DY+KVEPHAFVHFA   S
Sbjct: 29   LLNYLEDKIGLVYRCRLKTSWTPPESYPEFKIIDTAKIRRTEDYKKVEPHAFVHFASPES 88

Query: 186  ATSALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEF 365
             T+AL+A+G  +L L+ +PLKVS GP+NP+ LN++RRTT P+K+SDV VE+G + S  EF
Sbjct: 89   VTAALNASGCCDLFLKNQPLKVSCGPKNPYFLNQRRRTTTPFKMSDVLVEIGTLVSPGEF 148

Query: 366  VVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIK 545
             V WRGP  GV FLVDPF+G C+  F++DTAFSFKG  K AVIKC+F++ FL R+I EI+
Sbjct: 149  FVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAFSFKGIDKKAVIKCDFQVGFLVRDINEIR 208

Query: 546  HYRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCN 725
             Y D   L+VLL LASSP ++YRTADDDI+ESVPFDLLDDDDPWIRTTDFTPSGAIGRCN
Sbjct: 209  RYNDTSYLVVLLHLASSPWVWYRTADDDIEESVPFDLLDDDDPWIRTTDFTPSGAIGRCN 268

Query: 726  TYRISVRPRYGPYLTKALEYLRKRRVPVIYESPRHRLLVQDEPDFGVPMLDPFFCIQYKE 905
             YRIS+ PR+G  L KA+ YL+ +RV +     +  L  Q+EPDFG+PM D FF + +++
Sbjct: 269  FYRISIPPRHGAKLMKAMLYLKGQRVQIQELPLKQTLRTQNEPDFGMPMSDAFFYVHFQK 328

Query: 906  GISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKA 1085
             I+F ++FLVNA++HKGI NQH++S++FF+LLR++P+E+N  ALKH+CSYK PV+DA K 
Sbjct: 329  DIAFDIMFLVNAIVHKGIFNQHRLSDRFFELLRNQPKELNVAALKHLCSYKRPVFDATKR 388

Query: 1086 LELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADR 1265
            L++VQ+WLL NPKL +  ++++DIVEVRRL++TP+KAYC+PPEVELSNRVLR +R ++D 
Sbjct: 389  LKIVQEWLLRNPKLYQISKQLDDIVEVRRLVVTPSKAYCIPPEVELSNRVLRKFREVSDC 448

Query: 1266 FLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKY 1445
            FLRVTFMDE M T+N N L YYV P+ + ITSNS  Q+T ++KRVK IL  GFY CGRKY
Sbjct: 449  FLRVTFMDEGMQTINVNALNYYVAPIVKEITSNSFSQKTKIYKRVKTILEEGFYFCGRKY 508

Query: 1446 SFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVE 1625
            SFLAFSSNQLRDRSAWFFAEDK     +I+NWMGKF  RN+AKCAARMGQCFSSTYATVE
Sbjct: 509  SFLAFSSNQLRDRSAWFFAEDK-IRCDDIRNWMGKFNQRNVAKCAARMGQCFSSTYATVE 567

Query: 1626 VPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVI 1805
            V + +VNS LPD+ERN Y+FSDGIG+++  LA EVAEKL++  + P AYQIRYAG+KGV+
Sbjct: 568  VAANEVNSMLPDVERNNYIFSDGIGVITHDLAREVAEKLKLD-NVPSAYQIRYAGFKGVV 626

Query: 1806 ARWPNIKDGTHLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFW 1985
            A WP   DG  L LR SM KF+S H ILEIC+WTRFQPGFLNRQI+TLLSAL V D IFW
Sbjct: 627  ASWPAKGDGVRLSLRPSMNKFQSTHNILEICAWTRFQPGFLNRQIITLLSALGVPDEIFW 686

Query: 1986 RMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRA 2165
            +MQE M+ +L++ML D D+AFDV+T SC + G+ AAIMLS GF P TEPHLRGMLTS RA
Sbjct: 687  QMQEAMLLKLNQMLVDADIAFDVLTKSCAEHGNAAAIMLSCGFSPLTEPHLRGMLTSTRA 746

Query: 2166 AQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEK 2345
            AQL  LREK+RIFV SGRWLMG LDELGVLE GQCF+QVS PSLE  F KHGSRFSE  K
Sbjct: 747  AQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSET-K 805

Query: 2346 KLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLD 2525
             L VVKG V IAKNPCLHPGDVR+LEAVDAP+LHHL+DCLVFPQKGDRPHTNEASGSDLD
Sbjct: 806  NLHVVKGFVVIAKNPCLHPGDVRVLEAVDAPDLHHLNDCLVFPQKGDRPHTNEASGSDLD 865

Query: 2526 GELYFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICN 2705
            G+LYFVTWDENLIPPSKRSWIPM+YA  E++ L R V   DIIEFF +NMVNE LG ICN
Sbjct: 866  GDLYFVTWDENLIPPSKRSWIPMEYAPQESKLLTRQVMTRDIIEFFVRNMVNEHLGAICN 925

Query: 2706 AHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQT 2885
            AHVVHAD S+YGALDEKCI LAELAA AVDFPKTGK+VTMPP LKPKLYPDFMGKE  Q+
Sbjct: 926  AHVVHADSSDYGALDEKCIHLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKERHQS 985

Query: 2886 YHSNKILGKLYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCSY 3065
            Y SNKILG+LYR IKDA D    E+    F   +I YD+DLE+ GS  FIADAW  KCSY
Sbjct: 986  YRSNKILGRLYRHIKDAYDEDI-EAPYLNFVTGDIPYDKDLEVPGSADFIADAWEQKCSY 1044

Query: 3066 DGQLIGLLGQYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFESM 3245
            DGQL GL+GQYKV REEE+VTG IWSMPKY+S+KQGELKERLKH+YS L+KEFR  FE +
Sbjct: 1045 DGQLSGLIGQYKVKREEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRYTFEKL 1104

Query: 3246 DPEFDQLSDDEKNIMYEKKASAWYQVTYHESWLKKSKEL-------QMVDDAGKTVMLSF 3404
            + +  +LS++EKN++YE+KASAWYQVTYH  W+KKS +L       Q  D  G TVMLSF
Sbjct: 1105 NSDVGELSEEEKNLLYEQKASAWYQVTYHPEWVKKSLDLQDKSSENQEADSLGSTVMLSF 1164

Query: 3405 AWIAADYLARIKIRRR--RTENDISTKPIDSLGRYLADKI 3518
             WIA DYLAR KIR+R  R+ N  STKP+D L +YL++++
Sbjct: 1165 PWIAVDYLARTKIRQRHQRSGNFDSTKPVDYLAKYLSERL 1204


>ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
          Length = 1197

 Score = 1625 bits (4207), Expect = 0.0
 Identities = 786/1172 (67%), Positives = 947/1172 (80%), Gaps = 2/1172 (0%)
 Frame = +3

Query: 9    LMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI-DTESIQRKDDYEKVEPHAFVHFAVKHS 185
            LM Y E+ IG+V RCRLKTS TPP+SYP++E+ +  ++ + DDY+KV PHAFVHF    S
Sbjct: 28   LMSYLESEIGLVDRCRLKTSWTPPESYPDFEVSNVANVIKSDDYKKVVPHAFVHFVSPDS 87

Query: 186  ATSALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEF 365
            A  AL AAGRGELI   K LK SLGPE+P H+N++RRT +P+KLSDV V++G +   + F
Sbjct: 88   AAEALHAAGRGELIFNDKLLKASLGPESPFHINQRRRTKVPFKLSDVQVDIGNLTCHDGF 147

Query: 366  VVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIK 545
             V WRGP +G+DFLVDPF+G CK  FTKDTAFSFK   K   +KC++++EF+ R+I +I 
Sbjct: 148  SVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFSFKDNNKHTFLKCDYKMEFIVRDINQIT 207

Query: 546  HYRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCN 725
             Y D    ++LLQL SSP I+YRTADDDI + VP+DLLDDDDPWIRTTDFT SGAIGRCN
Sbjct: 208  RYTDTSCYVILLQLTSSPCIWYRTADDDIAKLVPYDLLDDDDPWIRTTDFTISGAIGRCN 267

Query: 726  TYRISVRPRYGPYLTKALEYLRKRRVPVIYESPRHRLLVQDEPDFGVPMLDPFFCIQYKE 905
            T+R+SV PRYG  L  A+ YL+++RV  +  +   ++L  +EPD+GV M D FFCI YK+
Sbjct: 268  TFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNRPPKIL--NEPDYGVQMTDHFFCILYKK 325

Query: 906  GISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKA 1085
             ISF++LFLVNAVMHKGIINQHQMS++FFDLLR++P EVN  AL H+ +++ PV DA K 
Sbjct: 326  DISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQPNEVNLAALSHIHAFRRPVLDACKK 385

Query: 1086 LELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADR 1265
            L+LVQ+WLL NP LL+R +E+ DIVE+RRL+ITP+KAYC PPEVELSNRVLR Y+++ADR
Sbjct: 386  LKLVQEWLLKNPTLLKRSKELVDIVEIRRLVITPSKAYCFPPEVELSNRVLRRYKDVADR 445

Query: 1266 FLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKY 1445
            FLRVTFMDE M  +N +V TYYV P+ + ITS+S PQ+T +F R+K IL +GF+LCGRKY
Sbjct: 446  FLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSFPQKTKIFARMKHILKHGFHLCGRKY 505

Query: 1446 SFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVE 1625
            SFLA+SSNQLRD+SAWFFAE K+  V  I  WMGKFTN+N+AKCAAR+GQCFSSTYAT+E
Sbjct: 506  SFLAYSSNQLRDQSAWFFAECKSISVDAILGWMGKFTNKNVAKCAARIGQCFSSTYATIE 565

Query: 1626 VPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVI 1805
            VP   VN  L D+ERNGYVFSDGIG ++  LA EVA+KL++   PPCAYQIRYAGYKGV+
Sbjct: 566  VPRNMVNHDLSDVERNGYVFSDGIGTITPDLAQEVADKLKMDGSPPCAYQIRYAGYKGVV 625

Query: 1806 ARWPNIKDGTHLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFW 1985
            A WP+ KDG  L LR SM KFESNH ILEICSWTRFQPGFLNRQI+TLLS L V D IFW
Sbjct: 626  ATWPSKKDGIRLALRPSMNKFESNHRILEICSWTRFQPGFLNRQIITLLSTLSVPDEIFW 685

Query: 1986 RMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRA 2165
             MQETM+S+LDRM+ DTD+AF+V+T SC +QG+ AAIMLSAGF+P+TEPHLRGML  IRA
Sbjct: 686  SMQETMISKLDRMITDTDVAFEVLTASCAEQGNAAAIMLSAGFEPRTEPHLRGMLMCIRA 745

Query: 2166 AQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEK 2345
            AQL  LREKARIFV  GRW MGC DE GVL+ GQCFIQVS P LE+ F KHGS F+E + 
Sbjct: 746  AQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQCFIQVSTPLLEKCFSKHGSLFAETKN 805

Query: 2346 KLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLD 2525
             L VV+G V IAKNPCLHPGDVRILEAVDAPELHHL+DCLVFP+ G+RPHTNEASGSDLD
Sbjct: 806  NLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHHLYDCLVFPRNGERPHTNEASGSDLD 865

Query: 2526 GELYFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICN 2705
            G+LYF TWD NLIPPSK+SW PM+YA  E + L R +   DI+EFF KNM+NESLGTICN
Sbjct: 866  GDLYFTTWDGNLIPPSKKSWPPMEYAPAEVKTLQRKITRWDIMEFFAKNMINESLGTICN 925

Query: 2706 AHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQT 2885
            AHVVHAD S++GALDE CI+L+ELAA AVDFPKTGK+VTMPP LKPKLYPDFMGKE  Q+
Sbjct: 926  AHVVHADRSKHGALDENCIQLSELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEATQS 985

Query: 2886 YHSNKILGKLYRKIKDA-NDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCS 3062
            Y S KILGK+YR+I+DA +D     S E  F   ++ YD DLE+ G++ FIA+AW+ KCS
Sbjct: 986  YKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGDVHYDVDLEVAGAEDFIAEAWDQKCS 1045

Query: 3063 YDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFES 3242
            YDGQL GLLGQYKVNREEE+VTGHIWSMPKY S+KQGELKE+LKH+YSTL+K+FR+VFE+
Sbjct: 1046 YDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRKQGELKEKLKHSYSTLKKDFRQVFEN 1105

Query: 3243 MDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAAD 3422
            + PEF+QL+ DE+N +YEKKASAWYQV YH +WLKKS EL+  D      MLSF WIAAD
Sbjct: 1106 LGPEFEQLTCDERNALYEKKASAWYQVAYHPTWLKKSLELREPDAPEAVPMLSFPWIAAD 1165

Query: 3423 YLARIKIRRRRTENDISTKPIDSLGRYLADKI 3518
            YLARIKI+ RRT++   TKPI+SL  YL+D++
Sbjct: 1166 YLARIKIKCRRTKSFDPTKPINSLASYLSDRM 1197