BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00008571
         (640 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004296004.1| PREDICTED: putative ribonuclease H protein A...    57   4e-08
ref|XP_004309110.1| PREDICTED: putative ribonuclease H protein A...    45   6e-07

>ref|XP_004296004.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 751

 Score = 56.6 bits (135), Expect(2) = 4e-08
 Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 1/139 (0%)
 Frame = +1

Query: 226 FWIDNWLGYCIAARIGIPHEYI*LFGQHISEYFYEKSWHFTFLFVEAYLDLVRDIVRFPI 405
           FW D WL   I  ++ +      L    ++++ +++ W     F   + D  + I+  P+
Sbjct: 375 FWSDKWLHSSIIQQLNMG-SLSHLLNSRVADFIWDQQWALPSHFSNLFPDCAKQILEIPL 433

Query: 406 AHSSK-DTRVWMHSDDGNITSKAAYSHIHPTSPMVHCGS*IWSPHIPERCLIVV*RAIYN 582
            ++ + D  +W HS  G  +    Y  + P    +   S +W   IP R  ++  R  + 
Sbjct: 434 PNTPESDILIWEHSSSGIFSFSDGYELVRPYFEKLDWASSVWHSFIPPRYSVLAWRIFHL 493

Query: 583 RLAVLDLLHPRGFIGPSVC 639
           +L   D L  RG    SVC
Sbjct: 494 KLPTDDQLQRRGIPFVSVC 512



 Score = 26.9 bits (58), Expect(2) = 4e-08
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 132 FLPSSIWARVRPCIEDCLEESRWILGNNSEV 224
           +  SS+W  ++  +    E SRWI+G+ + +
Sbjct: 343 YFTSSVWHGLKRVLPLLFEHSRWIIGDGNSI 373


>ref|XP_004309110.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 872

 Score = 45.4 bits (106), Expect(2) = 6e-07
 Identities = 40/149 (26%), Positives = 58/149 (38%), Gaps = 11/149 (7%)
 Frame = +1

Query: 226 FWIDNWLGYCIAARIGIPHEYI*LFGQH---------ISEYFYEKSWHFTFLFVEAYLDL 378
           FW DN+LG             I  FG H         +S+Y    SW    L       +
Sbjct: 431 FWRDNFLG----------RPLIEFFGNHGALNDNSSLVSDYIDNGSWVLPPLLQLNLSAV 480

Query: 379 VRDIVRFPIA--HSSKDTRVWMHSDDGNITSKAAYSHIHPTSPMVHCGS*IWSPHIPERC 552
              I + PI+   S +D  +W  S  G +T+K A+  +   SP+V  G  +WS  I  R 
Sbjct: 481 CNLICQVPISINPSMEDKLIWQASSTGELTAKQAFLFLQQASPVVPWGKPLWSKFILPRM 540

Query: 553 LIVV*RAIYNRLAVLDLLHPRGFIGPSVC 639
            +   + +   +    LL  RG    S C
Sbjct: 541 SLHAWKVMRGTVISYHLLQRRGVALVSRC 569



 Score = 34.3 bits (77), Expect(2) = 6e-07
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 96  CYLTSDNSIRRSFLPSSIWARVRPCIEDCLEESRWILGNNSEV 224
           C++ +  S RRS+ PSSIW  VR         +RW++G   ++
Sbjct: 387 CFIRNRFSKRRSYAPSSIWPGVRKFWGLVQNNTRWLVGTGDKI 429