BLASTX nr result
ID: Rehmannia24_contig00006022
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00006022
(1019 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_006907834.1| polyprotein [Horseradish latent virus] gi|57... 135 3e-29
gb|ABX80501.1| RdRp [Cauliflower mosaic virus] 133 1e-28
gb|ABX80500.1| RdRp [Cauliflower mosaic virus] 133 1e-28
sp|Q02964.1|POL_CAMVE RecName: Full=Enzymatic polyprotein; Inclu... 132 2e-28
gb|ABX80502.1| RdRp [Cauliflower mosaic virus] 132 2e-28
emb|CAA55974.1| unnamed protein product [Cauliflower mosaic virus] 132 2e-28
gb|AGT42112.1| reverse transcriptase [Cauliflower mosaic virus] 132 2e-28
gb|AGT42189.1| reverse transcriptase [Cauliflower mosaic virus] 132 3e-28
gb|AGT42182.1| reverse transcriptase [Cauliflower mosaic virus] 132 3e-28
gb|AGT42147.1| reverse transcriptase [Cauliflower mosaic virus] ... 132 3e-28
gb|AGT42105.1| reverse transcriptase [Cauliflower mosaic virus] 132 3e-28
gb|AGT42098.1| reverse transcriptase [Cauliflower mosaic virus] ... 132 3e-28
gb|AGT42077.1| reverse transcriptase [Cauliflower mosaic virus] 132 3e-28
gb|AGT42070.1| reverse transcriptase [Cauliflower mosaic virus] ... 132 3e-28
gb|AGT42063.1| reverse transcriptase [Cauliflower mosaic virus] ... 132 3e-28
gb|ABY66595.1| reverse transcriptase [Cauliflower mosaic virus] 132 3e-28
sp|P03555.1|POL_CAMVC RecName: Full=Enzymatic polyprotein; Inclu... 132 3e-28
ref|NP_056728.1| reverse transcriptase [Cauliflower mosaic virus... 132 3e-28
gb|AFI61742.1| reverse transcriptase [Cauliflower mosaic virus] 132 3e-28
gb|AGT42175.1| reverse transcriptase [Cauliflower mosaic virus] 131 4e-28
>ref|YP_006907834.1| polyprotein [Horseradish latent virus] gi|57790326|gb|AAW56089.1|
polyprotein [Horseradish latent virus]
Length = 679
Score = 135 bits (339), Expect = 3e-29
Identities = 97/340 (28%), Positives = 166/340 (48%), Gaps = 2/340 (0%)
Frame = +1
Query: 4 VFPKEIGEDLPA-IAGRDFSKRILILNRGIKQAEIMIGGAGSTPWYKVKTPPIYFHDTGA 180
V P+E E P I + ++ + L++ + +I+I G + ++ ++G
Sbjct: 65 VIPEERWEAAPRKINVKIANESTITLDKICRNLDIIIAGE------RFHIDVVFQQESGI 118
Query: 181 DILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPINFRS-KRGDEA 357
D ++GNNF Q + F Q T ++FT +++ + +LR AF R +P S K+ A
Sbjct: 119 DFIIGNNFCQEYSPFIQF--TGHIVFTMKDQYQVPITKLRRAFKRGIPGFLESMKKRSTA 176
Query: 358 KLRCPKMADRRKFGEALLSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTPEAIAELWMSL 537
+ P K +L R+FG +
Sbjct: 177 QQPEPLNISTNKT-VSLSRGRRFGEKLR-------------------------------- 203
Query: 538 MENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVKPGKEYEFVRFKPI 717
+T E + +E++ +K+ DP K ++AS+K+ + ++ KP+
Sbjct: 204 -------ITQERMVKIEELLEKVCSENPLDPEK--SKGWMQASIKLSDPTKV--IKVKPM 252
Query: 718 LMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPRLVINYKGINNI 897
+ DRE+ +K ++E LDLK+I P SP+ +P FLV N E +RGK R+V+NYK +N+
Sbjct: 253 KYSPMDREEFEKQIQELLDLKVIRPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNDA 312
Query: 898 LEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMDE 1017
D Y +P+++ L+ I+G KIFS FDCKSGF+Q+++DE
Sbjct: 313 TVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVRLDE 352
>gb|ABX80501.1| RdRp [Cauliflower mosaic virus]
Length = 401
Score = 133 bits (334), Expect = 1e-28
Identities = 92/293 (31%), Positives = 150/293 (51%), Gaps = 2/293 (0%)
Frame = +1
Query: 145 KTPPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMP 324
K P +Y ++G D ++GNNF Q ++ F Q T R+IFT + + + +L A
Sbjct: 52 KIPTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKNKSYPVHIAKLTRAV----- 104
Query: 325 INFRSKRGDEAKLRCPKMADRRKFGEALLSYRQFGSIQKDQKIWDNNLYSFRVQGEERVT 504
+ G E L K + + E + KI +N L + E R
Sbjct: 105 -----RVGTEGFLESMKKRSKTQQPEPVNI--------STNKI-ENPLEEIAILSEGRRL 150
Query: 505 PEAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLK--VK 678
E +L+++ Q ++ I++ +++ +E+PL D N+ K +K +K
Sbjct: 151 SEE--KLFIT-------------QQRMQKIEELLEKVCSENPL---DPNKTKQWMKASIK 192
Query: 679 PGKEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGK 858
+ ++ KP+ + DRE+ K +KE LDLK+I P SP+ +P FLV N E +RGK
Sbjct: 193 LSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGK 252
Query: 859 PRLVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMDE 1017
R+V+NYK +N D Y +P+++ L+ I+G KIFS FDCKSGF+Q+ +D+
Sbjct: 253 KRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 305
>gb|ABX80500.1| RdRp [Cauliflower mosaic virus]
Length = 401
Score = 133 bits (334), Expect = 1e-28
Identities = 92/293 (31%), Positives = 150/293 (51%), Gaps = 2/293 (0%)
Frame = +1
Query: 145 KTPPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMP 324
+ P +Y ++G D ++GNNF Q ++ F Q T R+IFT + + + +L A
Sbjct: 52 RIPTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKNKSYPVHIAKLTRAV----- 104
Query: 325 INFRSKRGDEAKLRCPKMADRRKFGEALLSYRQFGSIQKDQKIWDNNLYSFRVQGEERVT 504
+ G E L K + + E + KI +N L + E R
Sbjct: 105 -----RVGTEGFLESMKKRSKTQQPEPVNI--------STNKI-ENPLEEIAILSEGRKL 150
Query: 505 PEAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLK--VK 678
E +L+++ Q ++ I++ +++ +E+PL D N+ K +K +K
Sbjct: 151 SEE--KLFIT-------------QQRMQKIEELLEKVCSENPL---DPNKTKQWMKASIK 192
Query: 679 PGKEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGK 858
+ ++ KP+ + DRE+ K +KE LDLK+I P SP+ +P FLV N E +RGK
Sbjct: 193 LSDPSKTIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGK 252
Query: 859 PRLVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMDE 1017
R+V+NYK +N D Y +PS++ L+ I+G KIFS FDCKSGF+Q+ +D+
Sbjct: 253 KRMVVNYKAMNKATIGDAYNLPSKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 305
>sp|Q02964.1|POL_CAMVE RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic
protease; Includes: RecName: Full=Endonuclease; Includes:
RecName: Full=Reverse transcriptase
gi|293185|gb|AAA62375.1| reverse transcriptase
[Cauliflower mosaic virus]
Length = 679
Score = 132 bits (333), Expect = 2e-28
Identities = 92/293 (31%), Positives = 150/293 (51%), Gaps = 2/293 (0%)
Frame = +1
Query: 145 KTPPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMP 324
K P +Y ++G D ++GNNF Q ++ F Q T R+IFT + + + +L A
Sbjct: 99 KIPTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKNKSYPVHIAKLTRAV----- 151
Query: 325 INFRSKRGDEAKLRCPKMADRRKFGEALLSYRQFGSIQKDQKIWDNNLYSFRVQGEERVT 504
+ G E L K + + E + KI +N L + E R
Sbjct: 152 -----RVGTEGFLESMKKRSKTQQPEPVNI--------STNKI-ENPLKEIAILSEGRRL 197
Query: 505 PEAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLK--VK 678
E +L+++ Q ++ I++ +++ +E+PL D N+ K +K +K
Sbjct: 198 SEE--KLFIT-------------QQRMQKIEELLEKVCSENPL---DPNKTKQWMKASIK 239
Query: 679 PGKEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGK 858
+ ++ KP+ + DRE+ K +KE LDLK+I P SP+ +P FLV N E +RGK
Sbjct: 240 LSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGK 299
Query: 859 PRLVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMDE 1017
R+V+NYK +N D Y +P+++ L+ I+G KIFS FDCKSGF+Q+ +D+
Sbjct: 300 KRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 352
>gb|ABX80502.1| RdRp [Cauliflower mosaic virus]
Length = 401
Score = 132 bits (333), Expect = 2e-28
Identities = 92/292 (31%), Positives = 147/292 (50%), Gaps = 1/292 (0%)
Frame = +1
Query: 145 KTPPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMP 324
K P +Y ++G D ++GNNF Q ++ F Q T R+IFT + + + +L A
Sbjct: 52 KIPTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKNKSYPVHIAKLTRAV----- 104
Query: 325 INFRSKRGDEAKLRCPKMADRRKFGEALLSYRQFGSIQKDQKIWDNNLYSFRVQGEERVT 504
+ G E L K + + E + N+ + ++ E +
Sbjct: 105 -----RVGTEGFLESMKKRSKTQQPEPV------------------NISTNKI--ENPLE 139
Query: 505 PEAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-P 681
AI L E + +T + +E++ +K+ DP K +KAS+K+ P
Sbjct: 140 EIAILSXGRRLSEE-KLFITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDP 196
Query: 682 GKEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKP 861
K ++ KP+ + DRE+ K +KE LDLK+I P SP+ +P FLV N E +RGK
Sbjct: 197 SKA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKK 253
Query: 862 RLVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMDE 1017
R+V+NYK +N D Y +P+++ L+ I+G KIFS FDCKSGF+Q+ +D+
Sbjct: 254 RMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 305
>emb|CAA55974.1| unnamed protein product [Cauliflower mosaic virus]
Length = 680
Score = 132 bits (333), Expect = 2e-28
Identities = 92/293 (31%), Positives = 150/293 (51%), Gaps = 2/293 (0%)
Frame = +1
Query: 145 KTPPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMP 324
K P +Y ++G D ++GNNF Q ++ F Q T R+IFT + + + +L A
Sbjct: 100 KIPTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKNKSYPVHIAKLTRAV----- 152
Query: 325 INFRSKRGDEAKLRCPKMADRRKFGEALLSYRQFGSIQKDQKIWDNNLYSFRVQGEERVT 504
+ G E L K + + E + KI +N L + E R
Sbjct: 153 -----RVGTEGFLESMKKRSKTQQPEPVNI--------STNKI-ENPLEEIAILSEGRRL 198
Query: 505 PEAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLK--VK 678
E +L+++ Q ++ I++ +++ +E+PL D N+ K +K +K
Sbjct: 199 SEE--KLFIT-------------QQRMQKIEELLEKVCSENPL---DPNKTKQWMKASIK 240
Query: 679 PGKEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGK 858
+ ++ KP+ + DRE+ K +KE LDLK+I P SP+ +P FLV N E +RGK
Sbjct: 241 LSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGK 300
Query: 859 PRLVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMDE 1017
R+V+NYK +N D Y +P+++ L+ I+G KIFS FDCKSGF+Q+ +D+
Sbjct: 301 KRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 353
>gb|AGT42112.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 132 bits (332), Expect = 2e-28
Identities = 87/291 (29%), Positives = 146/291 (50%), Gaps = 2/291 (0%)
Frame = +1
Query: 151 PPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPIN 330
P +Y ++G D ++GNNF Q ++ F Q T R+IFT + + + +L +A
Sbjct: 104 PTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKDRTYPVHIAKLTKAV------- 154
Query: 331 FRSKRGDEAKLRCPKMADRRKFGEAL-LSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTP 507
+ G E L K + + E + +S + + + +++ + L+
Sbjct: 155 ---RVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLF------------ 199
Query: 508 EAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-PG 684
+T + +E++ +K+ DP K +KAS+K+ P
Sbjct: 200 -----------------ITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDPS 240
Query: 685 KEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPR 864
K ++ KP+ + DRE+ K +KE LDLK+I P SP+ +P FLV N E +RGK R
Sbjct: 241 KA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 297
Query: 865 LVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMDE 1017
+V+NYK +N D Y +P+++ L+ I+G KIFS FDCKSGF+Q+ +D+
Sbjct: 298 MVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 348
>gb|AGT42189.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 132 bits (331), Expect = 3e-28
Identities = 87/291 (29%), Positives = 145/291 (49%), Gaps = 2/291 (0%)
Frame = +1
Query: 151 PPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPIN 330
P +Y ++G D ++GNNF Q ++ F Q T R+IFT + + + +L A
Sbjct: 104 PTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKDRTYPVHIAKLTRAV------- 154
Query: 331 FRSKRGDEAKLRCPKMADRRKFGEAL-LSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTP 507
+ G E L K + + E + +S + + + +++ + L+
Sbjct: 155 ---RVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLF------------ 199
Query: 508 EAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-PG 684
+T + +E++ +K+ DP K +KAS+K+ P
Sbjct: 200 -----------------ITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDPS 240
Query: 685 KEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPR 864
K ++ KP+ + DRE+ K +KE LDLK+I P SP+ +P FLV N E +RGK R
Sbjct: 241 KA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 297
Query: 865 LVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMDE 1017
+V+NYK +N D Y +P+++ L+ I+G KIFS FDCKSGF+Q+ +D+
Sbjct: 298 MVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 348
>gb|AGT42182.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 132 bits (331), Expect = 3e-28
Identities = 87/291 (29%), Positives = 145/291 (49%), Gaps = 2/291 (0%)
Frame = +1
Query: 151 PPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPIN 330
P +Y ++G D ++GNNF Q ++ F Q T R+IFT + + + +L A
Sbjct: 104 PTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKDRTYPVHIAKLTRAV------- 154
Query: 331 FRSKRGDEAKLRCPKMADRRKFGEAL-LSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTP 507
+ G E L K + + E + +S + + + +++ + L+
Sbjct: 155 ---RVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLF------------ 199
Query: 508 EAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-PG 684
+T + +E++ +K+ DP K +KAS+K+ P
Sbjct: 200 -----------------ITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDPS 240
Query: 685 KEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPR 864
K ++ KP+ + DRE+ K +KE LDLK+I P SP+ +P FLV N E +RGK R
Sbjct: 241 KA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 297
Query: 865 LVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMDE 1017
+V+NYK +N D Y +P+++ L+ I+G KIFS FDCKSGF+Q+ +D+
Sbjct: 298 MVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 348
>gb|AGT42147.1| reverse transcriptase [Cauliflower mosaic virus]
gi|530722499|gb|AGT42154.1| reverse transcriptase
[Cauliflower mosaic virus]
Length = 675
Score = 132 bits (331), Expect = 3e-28
Identities = 87/291 (29%), Positives = 145/291 (49%), Gaps = 2/291 (0%)
Frame = +1
Query: 151 PPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPIN 330
P +Y ++G D ++GNNF Q ++ F Q T R+IFT + + + +L A
Sbjct: 104 PTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKDRTYPVHIAKLTRAV------- 154
Query: 331 FRSKRGDEAKLRCPKMADRRKFGEAL-LSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTP 507
+ G E L K + + E + +S + + + +++ + L+
Sbjct: 155 ---RVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLF------------ 199
Query: 508 EAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-PG 684
+T + +E++ +K+ DP K +KAS+K+ P
Sbjct: 200 -----------------ITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDPS 240
Query: 685 KEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPR 864
K ++ KP+ + DRE+ K +KE LDLK+I P SP+ +P FLV N E +RGK R
Sbjct: 241 KA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 297
Query: 865 LVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMDE 1017
+V+NYK +N D Y +P+++ L+ I+G KIFS FDCKSGF+Q+ +D+
Sbjct: 298 MVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 348
>gb|AGT42105.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 132 bits (331), Expect = 3e-28
Identities = 87/291 (29%), Positives = 145/291 (49%), Gaps = 2/291 (0%)
Frame = +1
Query: 151 PPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPIN 330
P +Y ++G D ++GNNF Q ++ F Q T R+IFT + + + +L A
Sbjct: 104 PTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKDRTYPVHIAKLTRAV------- 154
Query: 331 FRSKRGDEAKLRCPKMADRRKFGEAL-LSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTP 507
+ G E L K + + E + +S + + + +++ + L+
Sbjct: 155 ---RVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLF------------ 199
Query: 508 EAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-PG 684
+T + +E++ +K+ DP K +KAS+K+ P
Sbjct: 200 -----------------ITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDPS 240
Query: 685 KEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPR 864
K ++ KP+ + DRE+ K +KE LDLK+I P SP+ +P FLV N E +RGK R
Sbjct: 241 KA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 297
Query: 865 LVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMDE 1017
+V+NYK +N D Y +P+++ L+ I+G KIFS FDCKSGF+Q+ +D+
Sbjct: 298 MVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 348
>gb|AGT42098.1| reverse transcriptase [Cauliflower mosaic virus]
gi|530722467|gb|AGT42126.1| reverse transcriptase
[Cauliflower mosaic virus] gi|530722475|gb|AGT42133.1|
reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 132 bits (331), Expect = 3e-28
Identities = 87/291 (29%), Positives = 145/291 (49%), Gaps = 2/291 (0%)
Frame = +1
Query: 151 PPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPIN 330
P +Y ++G D ++GNNF Q ++ F Q T R+IFT + + + +L A
Sbjct: 104 PTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKDRTYPVHIAKLTRAV------- 154
Query: 331 FRSKRGDEAKLRCPKMADRRKFGEAL-LSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTP 507
+ G E L K + + E + +S + + + +++ + L+
Sbjct: 155 ---RVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLF------------ 199
Query: 508 EAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-PG 684
+T + +E++ +K+ DP K +KAS+K+ P
Sbjct: 200 -----------------ITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDPS 240
Query: 685 KEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPR 864
K ++ KP+ + DRE+ K +KE LDLK+I P SP+ +P FLV N E +RGK R
Sbjct: 241 KA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 297
Query: 865 LVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMDE 1017
+V+NYK +N D Y +P+++ L+ I+G KIFS FDCKSGF+Q+ +D+
Sbjct: 298 MVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 348
>gb|AGT42077.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 132 bits (331), Expect = 3e-28
Identities = 87/291 (29%), Positives = 145/291 (49%), Gaps = 2/291 (0%)
Frame = +1
Query: 151 PPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPIN 330
P +Y ++G D ++GNNF Q ++ F Q T R+IFT + + + +L A
Sbjct: 104 PTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKDRTYPVHITKLTRAV------- 154
Query: 331 FRSKRGDEAKLRCPKMADRRKFGEAL-LSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTP 507
+ G E L K + + E + +S + + + +++ + L+
Sbjct: 155 ---RVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLF------------ 199
Query: 508 EAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-PG 684
+T + +E++ +K+ DP K +KAS+K+ P
Sbjct: 200 -----------------ITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDPS 240
Query: 685 KEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPR 864
K ++ KP+ + DRE+ K +KE LDLK+I P SP+ +P FLV N E +RGK R
Sbjct: 241 KA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 297
Query: 865 LVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMDE 1017
+V+NYK +N D Y +P+++ L+ I+G KIFS FDCKSGF+Q+ +D+
Sbjct: 298 MVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 348
>gb|AGT42070.1| reverse transcriptase [Cauliflower mosaic virus]
gi|530722547|gb|AGT42196.1| reverse transcriptase
[Cauliflower mosaic virus]
Length = 675
Score = 132 bits (331), Expect = 3e-28
Identities = 87/291 (29%), Positives = 145/291 (49%), Gaps = 2/291 (0%)
Frame = +1
Query: 151 PPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPIN 330
P +Y ++G D ++GNNF Q ++ F Q T R+IFT + + + +L A
Sbjct: 104 PTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKDRTYPVHIAKLTRAV------- 154
Query: 331 FRSKRGDEAKLRCPKMADRRKFGEAL-LSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTP 507
+ G E L K + + E + +S + + + +++ + L+
Sbjct: 155 ---RVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLF------------ 199
Query: 508 EAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-PG 684
+T + +E++ +K+ DP K +KAS+K+ P
Sbjct: 200 -----------------ITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDPS 240
Query: 685 KEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPR 864
K ++ KP+ + DRE+ K +KE LDLK+I P SP+ +P FLV N E +RGK R
Sbjct: 241 KA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 297
Query: 865 LVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMDE 1017
+V+NYK +N D Y +P+++ L+ I+G KIFS FDCKSGF+Q+ +D+
Sbjct: 298 MVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 348
>gb|AGT42063.1| reverse transcriptase [Cauliflower mosaic virus]
gi|530722459|gb|AGT42119.1| reverse transcriptase
[Cauliflower mosaic virus] gi|530722507|gb|AGT42161.1|
reverse transcriptase [Cauliflower mosaic virus]
gi|530722515|gb|AGT42168.1| reverse transcriptase
[Cauliflower mosaic virus]
Length = 675
Score = 132 bits (331), Expect = 3e-28
Identities = 87/291 (29%), Positives = 145/291 (49%), Gaps = 2/291 (0%)
Frame = +1
Query: 151 PPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPIN 330
P +Y ++G D ++GNNF Q ++ F Q T R+IFT + + + +L A
Sbjct: 104 PTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKDRTYPVHIAKLTRAV------- 154
Query: 331 FRSKRGDEAKLRCPKMADRRKFGEAL-LSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTP 507
+ G E L K + + E + +S + + + +++ + L+
Sbjct: 155 ---RVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLF------------ 199
Query: 508 EAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-PG 684
+T + +E++ +K+ DP K +KAS+K+ P
Sbjct: 200 -----------------ITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDPS 240
Query: 685 KEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPR 864
K ++ KP+ + DRE+ K +KE LDLK+I P SP+ +P FLV N E +RGK R
Sbjct: 241 KA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 297
Query: 865 LVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMDE 1017
+V+NYK +N D Y +P+++ L+ I+G KIFS FDCKSGF+Q+ +D+
Sbjct: 298 MVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 348
>gb|ABY66595.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 132 bits (331), Expect = 3e-28
Identities = 87/291 (29%), Positives = 145/291 (49%), Gaps = 2/291 (0%)
Frame = +1
Query: 151 PPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPIN 330
P +Y ++G D ++GNNF Q ++ F Q T R+IFT + + + +L A
Sbjct: 103 PTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKDRTYPVHIAKLTRAV------- 153
Query: 331 FRSKRGDEAKLRCPKMADRRKFGEAL-LSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTP 507
+ G E L K + + E + +S + + + +++ + L+
Sbjct: 154 ---RVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLF------------ 198
Query: 508 EAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-PG 684
+T + +E++ +K+ DP K +KAS+K+ P
Sbjct: 199 -----------------ITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDPS 239
Query: 685 KEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPR 864
K ++ KP+ + DRE+ K +KE LDLK+I P SP+ +P FLV N E +RGK R
Sbjct: 240 KA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 296
Query: 865 LVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMDE 1017
+V+NYK +N D Y +P+++ L+ I+G KIFS FDCKSGF+Q+ +D+
Sbjct: 297 MVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 347
>sp|P03555.1|POL_CAMVC RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic
protease; Includes: RecName: Full=Endonuclease; Includes:
RecName: Full=Reverse transcriptase
Length = 679
Score = 132 bits (331), Expect = 3e-28
Identities = 92/293 (31%), Positives = 150/293 (51%), Gaps = 2/293 (0%)
Frame = +1
Query: 145 KTPPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMP 324
K P +Y ++G D ++GNNF Q ++ F Q T R+IFT + + + +L A
Sbjct: 99 KIPTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKNKSYPVHITKLTRAV----- 151
Query: 325 INFRSKRGDEAKLRCPKMADRRKFGEALLSYRQFGSIQKDQKIWDNNLYSFRVQGEERVT 504
+ G E L K + + E + KI +N L + E R
Sbjct: 152 -----RVGIEGFLESMKKRSKTQQPEPVNI--------STNKI-ENPLEEIAILSEGRRL 197
Query: 505 PEAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLK--VK 678
E +L+++ Q ++ I++ +++ +E+PL D N+ K +K +K
Sbjct: 198 SEE--KLFIT-------------QQRMQKIEELLEKVCSENPL---DPNKTKQWMKASIK 239
Query: 679 PGKEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGK 858
+ ++ KP+ + DRE+ K +KE LDLK+I P SP+ +P FLV N E +RGK
Sbjct: 240 LSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGK 299
Query: 859 PRLVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMDE 1017
R+V+NYK +N D Y +P+++ L+ I+G KIFS FDCKSGF+Q+ +D+
Sbjct: 300 KRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 352
>ref|NP_056728.1| reverse transcriptase [Cauliflower mosaic virus]
gi|130592|sp|P03554.1|POL_CAMVS RecName: Full=Enzymatic
polyprotein; Includes: RecName: Full=Aspartic protease;
Includes: RecName: Full=Endonuclease; Includes: RecName:
Full=Reverse transcriptase gi|58826|emb|CAA23460.1|
unnamed protein product [Cauliflower mosaic virus]
Length = 679
Score = 132 bits (331), Expect = 3e-28
Identities = 91/293 (31%), Positives = 150/293 (51%), Gaps = 2/293 (0%)
Frame = +1
Query: 145 KTPPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMP 324
+ P +Y ++G D ++GNNF Q ++ F Q T R+IFT + + + +L A
Sbjct: 99 RIPTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKNKSYPVHIAKLTRAV----- 151
Query: 325 INFRSKRGDEAKLRCPKMADRRKFGEALLSYRQFGSIQKDQKIWDNNLYSFRVQGEERVT 504
+ G E L K + + E + KI +N L + E R
Sbjct: 152 -----RVGTEGFLESMKKRSKTQQPEPVNI--------STNKI-ENPLEEIAILSEGRRL 197
Query: 505 PEAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLK--VK 678
E +L+++ Q ++ I++ +++ +E+PL D N+ K +K +K
Sbjct: 198 SEE--KLFIT-------------QQRMQKIEELLEKVCSENPL---DPNKTKQWMKASIK 239
Query: 679 PGKEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGK 858
+ ++ KP+ + DRE+ K +KE LDLK+I P SP+ +P FLV N E +RGK
Sbjct: 240 LSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGK 299
Query: 859 PRLVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMDE 1017
R+V+NYK +N D Y +P+++ L+ I+G KIFS FDCKSGF+Q+ +D+
Sbjct: 300 KRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 352
>gb|AFI61742.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 679
Score = 132 bits (331), Expect = 3e-28
Identities = 90/293 (30%), Positives = 149/293 (50%), Gaps = 2/293 (0%)
Frame = +1
Query: 145 KTPPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMP 324
K P +Y ++G D ++GNNF Q ++ F Q T R+IFT + + + +L A
Sbjct: 99 KIPTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKNKSYPVHIAKLTRAV----- 151
Query: 325 INFRSKRGDEAKLRCPKMADRRKFGEALLSYRQFGSIQKDQKIWDNNLYSFRVQGEERVT 504
+ G E L K + + E + N+ + +++ +
Sbjct: 152 -----RVGTEGFLESMKKRSKTQQPEPV------------------NISTNKIENPK--- 185
Query: 505 PEAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLK--VK 678
E IA L S + Q ++ I++ +++ +E+PL D N+ K +K +K
Sbjct: 186 -EEIAIL--SEGRRLAEEKLFITQQRMQKIEELLEKVCSENPL---DPNKTKQWMKASIK 239
Query: 679 PGKEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGK 858
+ ++ KP+ + DRE+ K +KE LDLK+I P SP+ +P FLV N E +RGK
Sbjct: 240 LSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGK 299
Query: 859 PRLVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMDE 1017
R+V+NYK +N D Y +P+++ L+ I+G KIFS FDCKSGF+Q+ +D+
Sbjct: 300 KRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQ 352
>gb|AGT42175.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 131 bits (330), Expect = 4e-28
Identities = 86/291 (29%), Positives = 145/291 (49%), Gaps = 2/291 (0%)
Frame = +1
Query: 151 PPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPIN 330
P +Y ++G D ++GNNF Q ++ F Q T R+IFT + + + +L A
Sbjct: 104 PTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKDRTYPVHIAKLTRAV------- 154
Query: 331 FRSKRGDEAKLRCPKMADRRKFGEAL-LSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTP 507
+ G E L K + + E + +S + + + +++ + L+
Sbjct: 155 ---RVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLF------------ 199
Query: 508 EAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-PG 684
+T + +E++ +K+ DP K +KAS+K+ P
Sbjct: 200 -----------------ITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDPS 240
Query: 685 KEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPR 864
K ++ KP+ + DRE+ K +KE LDLK+I P SP+ +P FLV N E +RGK R
Sbjct: 241 KA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 297
Query: 865 LVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMDE 1017
+V+NYK +N D Y +P+++ L+ ++G KIFS FDCKSGF+Q+ +D+
Sbjct: 298 MVVNYKAMNKATVGDAYNLPNKDELLTLVRGKKIFSSFDCKSGFWQVLLDQ 348