BLASTX nr result
ID: Rehmannia24_contig00005997
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00005997
(1757 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI32760.3| unnamed protein product [Vitis vinifera] 624 e-176
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ... 622 e-175
gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus pe... 617 e-174
gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theob... 608 e-171
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [... 593 e-167
ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF,... 591 e-166
ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF,... 588 e-165
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,... 587 e-165
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,... 586 e-165
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei... 582 e-163
ref|XP_002326192.1| predicted protein [Populus trichocarpa] 582 e-163
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,... 580 e-163
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr... 575 e-161
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr... 567 e-159
ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF,... 566 e-159
ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr... 563 e-158
ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF,... 551 e-154
ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF,... 540 e-151
ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF,... 540 e-151
ref|NP_565856.1| RNA polymerase sigma factor sigF [Arabidopsis t... 540 e-150
>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 624 bits (1609), Expect = e-176
Identities = 330/541 (60%), Positives = 416/541 (76%), Gaps = 15/541 (2%)
Frame = -2
Query: 1756 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPL-LCLKADSTYQQTLDKRQL 1580
SVL+LH+QV PAV S+ TT + R PTSVL+Q+QR+E RP LK + T+Q TL+KRQ+
Sbjct: 26 SVLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQM 84
Query: 1579 LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEEQSFSSTSV------- 1421
+ +S+ E N + D ++Y+ +F+ QLL +P LWY S Q E+S S+S+
Sbjct: 85 EIV--VSADEENSD-DHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTD 141
Query: 1420 --NLMGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDD-PSSIRGLASVP----VR 1262
N M V+ V+ALA++A SA K+A S+ ++A+L GA L+D PS G S P
Sbjct: 142 IENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSPSLGAISSPNLPLEE 201
Query: 1261 RIVRSTRLLERQTKRRVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQ 1082
+ VRSTRLLER++K+R PK+ + E + R+ E RK NEG+DP DPLR+FLWGPET +
Sbjct: 202 KTVRSTRLLERRSKKR-RNPKVAVHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRK 260
Query: 1081 LLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNS 902
LLTAKEESELIV+IQELM+L+EV+ RL++ REPT+VEWAEA G SC VLQSQ+H GN
Sbjct: 261 LLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNR 320
Query: 901 SRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWW 722
SR KLIYAN RMVVHIAKQYQGRGL+LQDLLQEGSMGLM SVEKFKP AGCRFA+YAYWW
Sbjct: 321 SRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWW 380
Query: 721 IRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERL 542
IRQ++RKA+FQHSRTIRLPEN+YSLL KV EAK+ +Q+G+H PTKE+IA G+++E+L
Sbjct: 381 IRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKL 440
Query: 541 EKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPR 362
++LL R+PLSMQQPVW DQ+TT+QE+TADT IE+P+V +KQ+MRQH RNLL VL P+
Sbjct: 441 QRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPK 500
Query: 361 ERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADML 182
ER+IIRLRFGI G ++LSEIG FG SKERVRQLE RAL+KLKQCLSS GLE+Y D+L
Sbjct: 501 ERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLL 560
Query: 181 I 179
+
Sbjct: 561 V 561
>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
Length = 572
Score = 622 bits (1605), Expect = e-175
Identities = 329/540 (60%), Positives = 415/540 (76%), Gaps = 15/540 (2%)
Frame = -2
Query: 1753 VLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPL-LCLKADSTYQQTLDKRQLL 1577
VL+LH+QV PAV S+ TT + R PTSVL+Q+QR+E RP LK + T+Q TL+KRQ+
Sbjct: 38 VLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQME 96
Query: 1576 MAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEEQSFSSTSV-------- 1421
+ +S+ E N + D ++Y+ +F+ QLL +P LWY S Q E+S S+S+
Sbjct: 97 IV--VSADEENSD-DHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDI 153
Query: 1420 -NLMGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDD-PSSIRGLASVP----VRR 1259
N M V+ V+ALA++A SA K+A S+ ++A+L GA L+D PS G S P +
Sbjct: 154 ENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSPSLGAISSPNLPLEEK 213
Query: 1258 IVRSTRLLERQTKRRVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQL 1079
VRSTRLLER++K+R PK+ + E + R+ E RK NEG+DP DPLR+FLWGPET +L
Sbjct: 214 TVRSTRLLERRSKKR-RNPKVAVHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKL 272
Query: 1078 LTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSS 899
LTAKEESELIV+IQELM+L+EV+ RL++ REPT+VEWAEA G SC VLQSQ+H GN S
Sbjct: 273 LTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRS 332
Query: 898 RDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWI 719
R KLIYAN RMVVHIAKQYQGRGL+LQDLLQEGSMGLM SVEKFKP AGCRFA+YAYWWI
Sbjct: 333 RQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWI 392
Query: 718 RQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLE 539
RQ++RKA+FQHSRTIRLPEN+YSLL KV EAK+ +Q+G+H PTKE+IA G+++E+L+
Sbjct: 393 RQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQ 452
Query: 538 KLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRE 359
+LL R+PLSMQQPVW DQ+TT+QE+TADT IE+P+V +KQ+MRQH RNLL VL P+E
Sbjct: 453 RLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKE 512
Query: 358 RKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 179
R+IIRLRFGI G ++LSEIG FG SKERVRQLE RAL+KLKQCLSS GLE+Y D+L+
Sbjct: 513 RRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 572
>gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
Length = 568
Score = 617 bits (1591), Expect = e-174
Identities = 331/544 (60%), Positives = 415/544 (76%), Gaps = 18/544 (3%)
Frame = -2
Query: 1756 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLL-CLKADSTYQQTLDKRQL 1580
SVL+LHEQ PAVTS+ TS+ R PTSVL+Q+QR+E +PLL LK D T + LD+ Q+
Sbjct: 32 SVLMLHEQAVPAVTSVPITSVARHFPTSVLLQEQRDEFKPLLHVLKEDKTSEAALDRMQI 91
Query: 1579 LMAPGLSSREGNKNVDPDEY---VNDFQLQLLRRPELWYLWASLQKEE--------QSFS 1433
G S E ++D D++ VN + QLL ++ +++SLQ +S +
Sbjct: 92 --ETGASVHE---DLDIDDFYPLVNSSKPQLLNH-DILDVFSSLQTGAKPSTPLTLESLT 145
Query: 1432 STSVNLMGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLAS--VPVRR 1259
+ S M VE +VVALA++A SA +EAAS+A+D++ GA DD LA+ V +
Sbjct: 146 TASNKHMDVEPCNVVALAKKALSASREAASLAEDSQSMGADFDD-LGYTSLANWIVEEEK 204
Query: 1258 IVRSTRLLERQTKR----RVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPE 1091
VRSTR+LER+ KR +VPK K+ E+N + +K +EGF+PNDPLR+FLWGPE
Sbjct: 205 TVRSTRILERRRKRIKTRKVPKSKVIGHESNSFTGSDVRKKISEGFNPNDPLRLFLWGPE 264
Query: 1090 TTQLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHC 911
T QLLTAKEE+ELI ++Q+L KL+EV+SRL+TQF REPTL+EWAEA G SC +L+SQ+
Sbjct: 265 TRQLLTAKEEAELIARVQDLFKLEEVKSRLQTQFGREPTLIEWAEAVGISCQILKSQLRS 324
Query: 910 GNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYA 731
G SSR+KLIYAN RMVVHIAKQYQGRGL LQDL+QEGSMGLMKSVEKFKPQAGCRFATYA
Sbjct: 325 GTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYA 384
Query: 730 YWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSV 551
YWWIRQ++RKA+FQHSRTIRLPENVYSLL KV EAKKSC+Q+GNH P KE++A G++V
Sbjct: 385 YWWIRQTVRKAIFQHSRTIRLPENVYSLLGKVLEAKKSCIQEGNHNPNKEELARRVGITV 444
Query: 550 ERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVL 371
E+LEKLLY R+PLSMQQPVW DQ+TT+QE+TADT +E+P+V +KQ+MRQH R+LLS+L
Sbjct: 445 EKLEKLLYATRMPLSMQQPVWADQDTTFQEVTADTGVEIPDVSVAKQLMRQHVRHLLSIL 504
Query: 370 NPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYA 191
N RER+IIRLR+GIE G+Q+SLSEIG FGLSKERVRQLESRA KL+Q L SQGL AY
Sbjct: 505 NLREREIIRLRYGIEDGKQRSLSEIGGMFGLSKERVRQLESRAFLKLRQSLGSQGLGAYG 564
Query: 190 DMLI 179
+L+
Sbjct: 565 PLLV 568
>gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
Length = 568
Score = 608 bits (1567), Expect = e-171
Identities = 321/545 (58%), Positives = 411/545 (75%), Gaps = 19/545 (3%)
Frame = -2
Query: 1756 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL---KADSTYQQTLDKR 1586
SVL+ HEQ PA TS+ TS+ R PTSVL+Q+QR++ RPL L K D Y DK+
Sbjct: 31 SVLMFHEQAAPAATSIPITSVARHFPTSVLLQEQRDDYRPLPVLHFFKEDKAYPGATDKQ 90
Query: 1585 QLLMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEE--------QSFSS 1430
Q+ L+ + N F+ +LL+ P+L L + L+ EE QS ++
Sbjct: 91 QIENGASLNEENASNNFGQ----LGFEKKLLQWPDLTQLLSLLESEENPSSTSNMQSVAA 146
Query: 1429 TSVNLMGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDP-SSIRGLAS---VPVR 1262
+ ++ VE ++VALA++A SA K+AAS+++D +L LDD S+ G A+ +PV
Sbjct: 147 DTKEIVDVEPSNIVALAKKALSASKQAASLSEDLKL---DLDDSLSNSLGSANSCTLPVE 203
Query: 1261 R----IVRSTRLLERQTKRRVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGP 1094
+ VRSTR LERQ+KRR +PK+ I+ET R+ + RK +EGFDPNDPLR+FLWGP
Sbjct: 204 KEEVVTVRSTRRLERQSKRRRVQPKVTIRETYSSRRTDVRRKLSEGFDPNDPLRLFLWGP 263
Query: 1093 ETTQLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVH 914
ET QLLTAKEESEL ++Q LM+L++V+S+L++QF REPTLVEWAEA G C LQ+++H
Sbjct: 264 ETKQLLTAKEESELSNQVQNLMRLEKVKSKLQSQFGREPTLVEWAEAIGLRCSALQAELH 323
Query: 913 CGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATY 734
GNSSRDKLIYAN RMVVHIAKQYQ RGLSLQDLLQEGSMGLMKSVE+FKPQ GCRFATY
Sbjct: 324 SGNSSRDKLIYANLRMVVHIAKQYQSRGLSLQDLLQEGSMGLMKSVERFKPQVGCRFATY 383
Query: 733 AYWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLS 554
AYWWIRQ+IRK++ QHSRT+RLPENV++LLSKV +AKKS +++GNH P+KE++A G++
Sbjct: 384 AYWWIRQTIRKSIMQHSRTVRLPENVHTLLSKVLDAKKSYIREGNHCPSKEELARRVGIT 443
Query: 553 VERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSV 374
VE+L+KLL+T R+PLSMQQ VW+DQ+ T+QE+T DT IE+P+V +KQ+MRQH RNLLSV
Sbjct: 444 VEKLDKLLFTTRMPLSMQQSVWVDQDITFQEVTPDTGIEIPDVSVAKQLMRQHVRNLLSV 503
Query: 373 LNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAY 194
L+PRER II+LRFGIE ++ SLSEIG FGLSKERVRQLESRALYKLKQCL+ GL AY
Sbjct: 504 LSPRERTIIKLRFGIEESKENSLSEIGNMFGLSKERVRQLESRALYKLKQCLNKHGLGAY 563
Query: 193 ADMLI 179
D+L+
Sbjct: 564 VDLLV 568
>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
rpoD, putative [Ricinus communis]
Length = 548
Score = 593 bits (1529), Expect = e-167
Identities = 323/534 (60%), Positives = 394/534 (73%), Gaps = 9/534 (1%)
Frame = -2
Query: 1753 VLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQLL 1577
V +LHEQ PAVTS TTS+ R PTSVL+Q+QR+E RPLL + K D T+Q T+D +Q
Sbjct: 35 VFMLHEQAVPAVTSAPTTSIARNFPTSVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQ-- 92
Query: 1576 MAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEEQSFSSTSVNLMGVEAD 1397
M PG S +EG +D QL+ L S QS ++ + LM VE
Sbjct: 93 MDPGTSDQEG--------ICSDVLDQLILHSNL-----SWSLTMQSITTNTDELMVVEPT 139
Query: 1396 HVVALAREAFSACKEAASIAKDARLFGAHLDD-------PSSIRGLASVPVRRIVRSTRL 1238
+V+ LAR+A SA KEAA +A+ A+LDD P+ + + V+ VRSTR
Sbjct: 140 NVIDLARKALSASKEAALLAQKC----ANLDDTVSTGLEPTDLSNFSLEEVKT-VRSTRR 194
Query: 1237 LERQTK-RRVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEE 1061
LERQ+K RRV K K E R+ +K NEGFDP DPLR+FLWGPET QLLTAKEE
Sbjct: 195 LERQSKNRRVTKTKEIFHEPYSSRRAGVQKKINEGFDPKDPLRLFLWGPETKQLLTAKEE 254
Query: 1060 SELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIY 881
SELI ++Q+LM L+ V+ + + QF R+PTLVEWA+A G S V+QSQ+H GN SR+KLI
Sbjct: 255 SELIGQVQDLMSLENVKEKFKLQFGRDPTLVEWADAVGLSYSVMQSQLHSGNRSREKLIN 314
Query: 880 ANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRK 701
AN RMVVHIAKQYQGRGLSLQDLLQEGSMGLMKS+EKFKPQ GCRFATYAYWWIRQ++RK
Sbjct: 315 ANLRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSIEKFKPQVGCRFATYAYWWIRQTVRK 374
Query: 700 ALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTA 521
A+FQHSRTIRLPENVY L KV EAK+S + +GNH PTKE++A G++ RLE+LLY A
Sbjct: 375 AIFQHSRTIRLPENVYHTLGKVSEAKRSYIMEGNHNPTKEELAKRIGITTVRLERLLYMA 434
Query: 520 RVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRL 341
R+PLSMQQ VW DQ TT+QEITAD +E+PE+ +KQ+MR+H +LL++LNPRERKIIRL
Sbjct: 435 RMPLSMQQTVWADQETTFQEITADIEVEIPELCVAKQLMRKHVLSLLNILNPRERKIIRL 494
Query: 340 RFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 179
R+GIE G++KSLSEIG+ FGLSKERVRQLESRALYKLKQCL+S GLEAYAD+L+
Sbjct: 495 RYGIEDGKKKSLSEIGSVFGLSKERVRQLESRALYKLKQCLASHGLEAYADLLV 548
>ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Solanum tuberosum]
Length = 562
Score = 591 bits (1523), Expect = e-166
Identities = 326/541 (60%), Positives = 393/541 (72%), Gaps = 16/541 (2%)
Frame = -2
Query: 1756 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQL 1580
SVL+LHE P ++S+ LGR P S + +Q+ E+R L L K + T T+D+R
Sbjct: 27 SVLMLHEHAAPVLSSVPHAYLGRHVPASAIGPEQQFENRLQLHLVKEEKTSLATIDRR-- 84
Query: 1579 LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLW--------ASLQKEEQSFSSTS 1424
L+ S E N VD ++ +N Q+QLLR P Y + L ++ S
Sbjct: 85 LVDAASSELEENDAVDSEQNINALQVQLLRCPGPSYSFPPYYLKGKGPLSPNKEPLHSKG 144
Query: 1423 VNLMGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPV------R 1262
LM E VVALAR+A A +EAA +A+D++L LDD + L++ V +
Sbjct: 145 DKLMNFEPHSVVALARKALLASREAALLAEDSKL----LDDSNFPNFLSTNLVDDKLKEQ 200
Query: 1261 RIVRSTRLLERQTKRR-VPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETT 1085
R VRSTR ERQ+++R PKP ++QETN +P+ RK NE D NDPLRMFLWGPET
Sbjct: 201 RTVRSTRFTERQSRKRGAPKPTQQVQETNRSGRPDVRRKVNESIDLNDPLRMFLWGPETK 260
Query: 1084 QLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGN 905
QLLTAKEESELIVKIQ MKLQEV+ +L+ QF+ EPT VEWAEAAG + L+SQ+ G
Sbjct: 261 QLLTAKEESELIVKIQISMKLQEVKHQLQIQFAHEPTSVEWAEAAGITSRELKSQLLSGK 320
Query: 904 SSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYW 725
SSR+KLI AN RMVVHIAKQYQGRGL+LQDLLQEGSMGLMKSVEKFKPQAGCRF TYAYW
Sbjct: 321 SSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMKSVEKFKPQAGCRFPTYAYW 380
Query: 724 WIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVER 545
WIRQS+RKA+FQHSRTIRLPENVY+LLSKV +AKK C+QQGN YPTKEDIA+CAG+SVER
Sbjct: 381 WIRQSVRKAIFQHSRTIRLPENVYALLSKVKDAKKECIQQGNRYPTKEDIASCAGMSVER 440
Query: 544 LEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNP 365
L+ LL R PLSMQQ VW DQ+TT+QEITAD IE PE+ SKQ+MR+H R LL+VL+P
Sbjct: 441 LQNLLSNVRTPLSMQQSVWSDQDTTFQEITADNAIEAPELSVSKQLMRRHIRGLLNVLSP 500
Query: 364 RERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADM 185
+ERKIIRLRFGI G+ KSLSEIG FGLSKERVRQLE+RALYKLKQ L+ GL+AY+D+
Sbjct: 501 KERKIIRLRFGIGDGKPKSLSEIGTVFGLSKERVRQLETRALYKLKQNLNKHGLDAYSDL 560
Query: 184 L 182
L
Sbjct: 561 L 561
>ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Solanum lycopersicum]
Length = 563
Score = 588 bits (1517), Expect = e-165
Identities = 327/542 (60%), Positives = 396/542 (73%), Gaps = 17/542 (3%)
Frame = -2
Query: 1756 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQL 1580
SVL+LHE P ++S+ T LGR P S + +Q E+R L L K + T T+D+R
Sbjct: 27 SVLMLHEHAAPVLSSVPHTYLGRYVPASAIGPEQHFENRLQLHLVKEEKTSLATIDRR-- 84
Query: 1579 LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLW--------ASLQKEEQSFSSTS 1424
L+ S E N VD ++ +N Q+QLL P Y + L ++ S
Sbjct: 85 LVEAASSELEENDAVDSEQNINALQVQLLHWPGPSYSFPPYYLKGKGPLSPNKEPLHSKG 144
Query: 1423 VNLMGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPV------R 1262
LM E VVALAR+A A KEAA +A+D++L LDD L++ V +
Sbjct: 145 DKLMNFEPHSVVALARKALLASKEAALLAEDSKL----LDDSHFPNFLSTHLVDDKLKEQ 200
Query: 1261 RIVRSTRLLERQTKRR-VPKPKIEIQETNHRR-KPESHRKFNEGFDPNDPLRMFLWGPET 1088
R VRSTR +ERQ+++R PKP E+QETN+R +P+ RK NE D NDPLRMFLWGPET
Sbjct: 201 RTVRSTRFIERQSRKRGAPKPIQEVQETNNRSGRPDVRRKVNESIDLNDPLRMFLWGPET 260
Query: 1087 TQLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCG 908
QLLTAKEESELIVKIQ MKLQEV+ +L+ QF+REPT +EWAEAAG + L+SQ+ G
Sbjct: 261 KQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAREPTSLEWAEAAGITSRELKSQLLSG 320
Query: 907 NSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAY 728
SSR+KLI AN RMVVHIAKQYQGRGL+LQDLLQEGSMGLMKSVEKFKPQAGCRF TYAY
Sbjct: 321 KSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMKSVEKFKPQAGCRFPTYAY 380
Query: 727 WWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVE 548
WWIRQS+RKA+FQHSRTIRLPENVY+LLSKV +AK+ C++QGN +PTKEDIA+CAG+SVE
Sbjct: 381 WWIRQSVRKAIFQHSRTIRLPENVYALLSKVKDAKRECIRQGNRHPTKEDIASCAGMSVE 440
Query: 547 RLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLN 368
RL+ LL R PLSMQQ VW DQ+TT+QEITAD IE PE+ SKQ+MR+H R LL+VL+
Sbjct: 441 RLQNLLSNVRTPLSMQQSVWSDQDTTFQEITADNAIEAPELSVSKQLMRRHIRGLLNVLS 500
Query: 367 PRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYAD 188
P+ERKIIRLRFGI G+ KSLSEIGA FGLSKERVRQLE+RALYKLKQ L+ GL+AY+D
Sbjct: 501 PKERKIIRLRFGIGDGKPKSLSEIGAVFGLSKERVRQLETRALYKLKQNLNKHGLDAYSD 560
Query: 187 ML 182
+L
Sbjct: 561 LL 562
>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
isoform X2 [Citrus sinensis]
Length = 569
Score = 587 bits (1514), Expect = e-165
Identities = 310/538 (57%), Positives = 399/538 (74%), Gaps = 12/538 (2%)
Frame = -2
Query: 1756 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQL 1580
SVL+ +EQ PAV S+ T+S+ R PTSVL+Q+QR+E RPLL + K D T Q T D R
Sbjct: 35 SVLMHNEQSAPAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRN- 93
Query: 1579 LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEE--------QSFSSTS 1424
M E + D D+ V D + Q L P+LW L +++ E QS S+ +
Sbjct: 94 -METEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDT 152
Query: 1423 VNLMGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPVRRI--VR 1250
+ E VALAR+A SA KEAAS+A++ +L GA D S L P+ + VR
Sbjct: 153 EESVDAEPFDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLG-YPLEEVKTVR 211
Query: 1249 STRLLERQTKRR-VPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLT 1073
ST+ LER++K+R V KPK+ ET + RK +K +EGFD NDPLR+FLWGPET +LLT
Sbjct: 212 STQFLERRSKKRKVSKPKVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLT 271
Query: 1072 AKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRD 893
A EE ELI +IQ+L++L++ +S+L++QF REPTL+EWA+A G SC L+S++H GNSSR+
Sbjct: 272 ADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSRE 331
Query: 892 KLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQ 713
KLI AN R+VVH+AKQYQGRG+ L DLLQEGSMGLMKSVEKFKPQAGCRFA+YAYWW+RQ
Sbjct: 332 KLINANLRLVVHVAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
Query: 712 SIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKL 533
+IRKA+FQHSRTIRLPEN+Y+LLS+V EAK+ +Q+GNH P KED+A G++VE+LE+L
Sbjct: 392 TIRKAIFQHSRTIRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451
Query: 532 LYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERK 353
++ R+PLSMQQPVW DQ+TT+QEITADT +E+P++ KQ+MRQH RNLL++LNP+ER
Sbjct: 452 IFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERC 511
Query: 352 IIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 179
I+RLRFGIE G+ KSLSE+G FGLSKERVRQLESRALY+LKQ L + YAD+LI
Sbjct: 512 IVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 569
>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
isoform X1 [Citrus sinensis]
Length = 570
Score = 586 bits (1511), Expect = e-165
Identities = 309/538 (57%), Positives = 399/538 (74%), Gaps = 12/538 (2%)
Frame = -2
Query: 1756 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQL 1580
+VL+ +EQ PAV S+ T+S+ R PTSVL+Q+QR+E RPLL + K D T Q T D R
Sbjct: 36 AVLMHNEQSAPAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRN- 94
Query: 1579 LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEE--------QSFSSTS 1424
M E + D D+ V D + Q L P+LW L +++ E QS S+ +
Sbjct: 95 -METEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDT 153
Query: 1423 VNLMGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPVRRI--VR 1250
+ E VALAR+A SA KEAAS+A++ +L GA D S L P+ + VR
Sbjct: 154 EESVDAEPFDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLG-YPLEEVKTVR 212
Query: 1249 STRLLERQTKRR-VPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLT 1073
ST+ LER++K+R V KPK+ ET + RK +K +EGFD NDPLR+FLWGPET +LLT
Sbjct: 213 STQFLERRSKKRKVSKPKVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLT 272
Query: 1072 AKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRD 893
A EE ELI +IQ+L++L++ +S+L++QF REPTL+EWA+A G SC L+S++H GNSSR+
Sbjct: 273 ADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSRE 332
Query: 892 KLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQ 713
KLI AN R+VVH+AKQYQGRG+ L DLLQEGSMGLMKSVEKFKPQAGCRFA+YAYWW+RQ
Sbjct: 333 KLINANLRLVVHVAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 392
Query: 712 SIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKL 533
+IRKA+FQHSRTIRLPEN+Y+LLS+V EAK+ +Q+GNH P KED+A G++VE+LE+L
Sbjct: 393 TIRKAIFQHSRTIRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 452
Query: 532 LYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERK 353
++ R+PLSMQQPVW DQ+TT+QEITADT +E+P++ KQ+MRQH RNLL++LNP+ER
Sbjct: 453 IFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERC 512
Query: 352 IIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 179
I+RLRFGIE G+ KSLSE+G FGLSKERVRQLESRALY+LKQ L + YAD+LI
Sbjct: 513 IVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 570
>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
FACTOR family protein [Populus trichocarpa]
Length = 535
Score = 582 bits (1501), Expect = e-163
Identities = 313/528 (59%), Positives = 390/528 (73%), Gaps = 3/528 (0%)
Frame = -2
Query: 1756 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQL 1580
SVL+L EQ TPAV+S+ TTS + PTSVL+Q+QR+E RPL + K D Q TLD+R+
Sbjct: 27 SVLILREQATPAVSSIPTTSTAQHFPTSVLLQEQRDEFRPLQNIFKEDRASQATLDRRKT 86
Query: 1579 LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEEQSFSSTSVNLMGVEA 1400
+ G S EG + + D+ V +F+ QL P W L + L+ VE
Sbjct: 87 EI--GTSGHEGKDSDELDQLVENFEYQLHHWPAYWNL--------------TDKLIDVEP 130
Query: 1399 DHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLA-SVPVRRIVRSTRLLERQT 1223
+V+ LA+ A SA K AA +A + LD+ +S + S+ +IVRS R L RQ+
Sbjct: 131 TNVINLAKRALSASKHAAFLADN----NTDLDNLASTSSSSFSLEEVKIVRSRRHLARQS 186
Query: 1222 -KRRVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIV 1046
RR PK K I ET + + ++ ++GFDPNDPLR+FLWGPET QLLTAKEE ELI
Sbjct: 187 LNRRAPKTKDLIFETYDSKSADVQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIA 246
Query: 1045 KIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRM 866
+IQ+LM L+ V++RLE+QF REPTLVEWA+A G SCHVL+ Q+H GN SR+KLI AN RM
Sbjct: 247 QIQDLMNLEGVKNRLESQFGREPTLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRM 306
Query: 865 VVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQH 686
VVHIAK+YQ RGL LQDLLQEG++GLMKS+EKFKPQAGCRFATYAYWWIRQ+I KA+FQH
Sbjct: 307 VVHIAKRYQNRGLGLQDLLQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQH 366
Query: 685 SRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLS 506
SRTIRLPENVY LL KV EAK+S +Q+GNH PT E+IA G+++++LEKLL R PLS
Sbjct: 367 SRTIRLPENVYGLLGKVMEAKRSYIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLS 426
Query: 505 MQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIE 326
MQQ VW DQNTT+QEITADT IE+P++ +KQ+MR+H R LL++L+ +ER+IIRLRFGIE
Sbjct: 427 MQQTVWSDQNTTFQEITADTEIEIPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIE 486
Query: 325 GGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADML 182
G+QKSLSEIG FGLSKERVRQLESRALYKLKQC+ S GL+AYAD+L
Sbjct: 487 DGKQKSLSEIGNVFGLSKERVRQLESRALYKLKQCVGSHGLDAYADLL 534
>ref|XP_002326192.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 582 bits (1501), Expect = e-163
Identities = 313/528 (59%), Positives = 390/528 (73%), Gaps = 3/528 (0%)
Frame = -2
Query: 1756 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQL 1580
SVL+L EQ TPAV+S+ TTS + PTSVL+Q+QR+E RPL + K D Q TLD+R+
Sbjct: 27 SVLILREQATPAVSSIPTTSTAQHFPTSVLLQEQRDEFRPLQNIFKEDRASQATLDRRKT 86
Query: 1579 LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEEQSFSSTSVNLMGVEA 1400
+ G S EG + + D+ V +F+ QL P W L + L+ VE
Sbjct: 87 EI--GTSGHEGKDSDELDQLVENFEYQLHHWPAYWNL--------------TDKLIDVEP 130
Query: 1399 DHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLA-SVPVRRIVRSTRLLERQT 1223
+V+ LA+ A SA K AA +A + LD+ +S + S+ +IVRS R L RQ+
Sbjct: 131 TNVINLAKRALSASKHAAFLADN----NTDLDNLASTSSSSFSLEEVKIVRSRRHLARQS 186
Query: 1222 -KRRVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIV 1046
RR PK K I ET + + ++ ++GFDPNDPLR+FLWGPET QLLTAKEE ELI
Sbjct: 187 LNRRAPKTKDLIFETYDSKSADIQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIA 246
Query: 1045 KIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRM 866
+IQ+LM L+ V++RLE+QF REPTLVEWA+A G SCHVL+ Q+H GN SR+KLI AN RM
Sbjct: 247 QIQDLMNLEGVKNRLESQFGREPTLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRM 306
Query: 865 VVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQH 686
VVHIAK+YQ RGL LQDLLQEG++GLMKS+EKFKPQAGCRFATYAYWWIRQ+I KA+FQH
Sbjct: 307 VVHIAKRYQNRGLGLQDLLQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQH 366
Query: 685 SRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLS 506
SRTIRLPENVY LL KV EAK+S +Q+GNH PT E+IA G+++++LEKLL R PLS
Sbjct: 367 SRTIRLPENVYGLLGKVMEAKRSYIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLS 426
Query: 505 MQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIE 326
MQQ VW DQNTT+QEITADT IE+P++ +KQ+MR+H R LL++L+ +ER+IIRLRFGIE
Sbjct: 427 MQQTVWSDQNTTFQEITADTEIEIPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIE 486
Query: 325 GGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADML 182
G+QKSLSEIG FGLSKERVRQLESRALYKLKQC+ S GL+AYAD+L
Sbjct: 487 DGKQKSLSEIGNVFGLSKERVRQLESRALYKLKQCVGSHGLDAYADLL 534
>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
isoform X3 [Citrus sinensis]
Length = 561
Score = 580 bits (1494), Expect = e-163
Identities = 305/528 (57%), Positives = 392/528 (74%), Gaps = 12/528 (2%)
Frame = -2
Query: 1726 PAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQLLMAPGLSSRE 1550
PAV S+ T+S+ R PTSVL+Q+QR+E RPLL + K D T Q T D R M E
Sbjct: 37 PAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRN--METEAFFVE 94
Query: 1549 GNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEE--------QSFSSTSVNLMGVEADH 1394
+ D D+ V D + Q L P+LW L +++ E QS S+ + + E
Sbjct: 95 EKNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFD 154
Query: 1393 VVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPVRRI--VRSTRLLERQTK 1220
VALAR+A SA KEAAS+A++ +L GA D S L P+ + VRST+ LER++K
Sbjct: 155 AVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLG-YPLEEVKTVRSTQFLERRSK 213
Query: 1219 RR-VPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVK 1043
+R V KPK+ ET + RK +K +EGFD NDPLR+FLWGPET +LLTA EE ELI +
Sbjct: 214 KRKVSKPKVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQ 273
Query: 1042 IQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMV 863
IQ+L++L++ +S+L++QF REPTL+EWA+A G SC L+S++H GNSSR+KLI AN R+V
Sbjct: 274 IQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLV 333
Query: 862 VHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHS 683
VH+AKQYQGRG+ L DLLQEGSMGLMKSVEKFKPQAGCRFA+YAYWW+RQ+IRKA+FQHS
Sbjct: 334 VHVAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHS 393
Query: 682 RTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSM 503
RTIRLPEN+Y+LLS+V EAK+ +Q+GNH P KED+A G++VE+LE+L++ R+PLSM
Sbjct: 394 RTIRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSM 453
Query: 502 QQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEG 323
QQPVW DQ+TT+QEITADT +E+P++ KQ+MRQH RNLL++LNP+ER I+RLRFGIE
Sbjct: 454 QQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIED 513
Query: 322 GEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 179
G+ KSLSE+G FGLSKERVRQLESRALY+LKQ L + YAD+LI
Sbjct: 514 GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 561
>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
gi|557530788|gb|ESR41971.1| hypothetical protein
CICLE_v10011376mg [Citrus clementina]
Length = 569
Score = 575 bits (1482), Expect = e-161
Identities = 307/538 (57%), Positives = 394/538 (73%), Gaps = 12/538 (2%)
Frame = -2
Query: 1756 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQL 1580
SVL+ +EQ PAV S+ T+S+ R PTSVL+Q+QR+E RPLL + K D T Q T D R
Sbjct: 35 SVLMHNEQSAPAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRN- 93
Query: 1579 LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEE--------QSFSSTS 1424
M E + D D+ V D + Q L P+LW L +++ E QS S+ +
Sbjct: 94 -METEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDT 152
Query: 1423 VNLMGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPVRRI--VR 1250
+ E VALAR+A SA KEAAS+A++ +L GA D S L P+ + VR
Sbjct: 153 EESVDAEPFDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLG-YPLEEVKTVR 211
Query: 1249 STRLLERQTKRR-VPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLT 1073
STR LER++K+R V KPK+ ET + RK +K +EGFDPNDPLR+FLWGPET +LLT
Sbjct: 212 STRFLERRSKKRKVSKPKVTNHETYNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLT 271
Query: 1072 AKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRD 893
A EE ELI +IQ+L++L++ +S+L++QF REPTL+ SC L+S++H GNSSR+
Sbjct: 272 ADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLILKLLRFHLSCRDLKSELHSGNSSRE 331
Query: 892 KLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQ 713
KLI AN R+VVH+AKQYQGRG+ L DLLQEGSMGLMKSVEKFKPQAGCRFA+YAYWW+RQ
Sbjct: 332 KLINANLRLVVHVAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
Query: 712 SIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKL 533
+IRKA+FQHSRTIRLPEN+Y+LLS+V EAK+ +Q+GNH P KED+A G++VE+LE+L
Sbjct: 392 TIRKAIFQHSRTIRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451
Query: 532 LYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERK 353
++ R+PLSMQQPVW DQ+TT+QEITADT +E+P++ KQ+MRQH RNLL++LNP+ER
Sbjct: 452 IFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERC 511
Query: 352 IIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 179
I+RLRFGIE G+ KSLSE+G FGLSKERVRQLESRALY+LKQ L + YAD+LI
Sbjct: 512 IVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 569
>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
gi|557530789|gb|ESR41972.1| hypothetical protein
CICLE_v10011376mg [Citrus clementina]
Length = 561
Score = 567 bits (1462), Expect = e-159
Identities = 302/528 (57%), Positives = 387/528 (73%), Gaps = 12/528 (2%)
Frame = -2
Query: 1726 PAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQLLMAPGLSSRE 1550
PAV S+ T+S+ R PTSVL+Q+QR+E RPLL + K D T Q T D R M E
Sbjct: 37 PAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRN--METEAFFVE 94
Query: 1549 GNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEE--------QSFSSTSVNLMGVEADH 1394
+ D D+ V D + Q L P+LW L +++ E QS S+ + + E
Sbjct: 95 EKNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFD 154
Query: 1393 VVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPVRRI--VRSTRLLERQTK 1220
VALAR+A SA KEAAS+A++ +L GA D S L P+ + VRSTR LER++K
Sbjct: 155 AVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLG-YPLEEVKTVRSTRFLERRSK 213
Query: 1219 RR-VPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVK 1043
+R V KPK+ ET + RK +K +EGFDPNDPLR+FLWGPET +LLTA EE ELI +
Sbjct: 214 KRKVSKPKVTNHETYNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQ 273
Query: 1042 IQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMV 863
IQ+L++L++ +S+L++QF REPTL+ SC L+S++H GNSSR+KLI AN R+V
Sbjct: 274 IQDLIRLEKEKSKLQSQFGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLV 333
Query: 862 VHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHS 683
VH+AKQYQGRG+ L DLLQEGSMGLMKSVEKFKPQAGCRFA+YAYWW+RQ+IRKA+FQHS
Sbjct: 334 VHVAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHS 393
Query: 682 RTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSM 503
RTIRLPEN+Y+LLS+V EAK+ +Q+GNH P KED+A G++VE+LE+L++ R+PLSM
Sbjct: 394 RTIRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSM 453
Query: 502 QQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEG 323
QQPVW DQ+TT+QEITADT +E+P++ KQ+MRQH RNLL++LNP+ER I+RLRFGIE
Sbjct: 454 QQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIED 513
Query: 322 GEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 179
G+ KSLSE+G FGLSKERVRQLESRALY+LKQ L + YAD+LI
Sbjct: 514 GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 561
>ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Fragaria vesca subsp. vesca]
Length = 554
Score = 567 bits (1460), Expect = e-159
Identities = 310/534 (58%), Positives = 395/534 (73%), Gaps = 8/534 (1%)
Frame = -2
Query: 1756 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQL 1580
SVL+LHEQ PAVTS+ T+ + R PTSVL+Q+QR+E +PLL + K + Q TLD+ Q+
Sbjct: 32 SVLMLHEQAAPAVTSVPTSFITRHFPTSVLLQEQRDEFKPLLHIFKEEKASQATLDRIQI 91
Query: 1579 LMAPGLSSREGNKNVDPDEY--VNDFQLQLLRRPELWYLWASLQKEEQSFSSTSVNL-MG 1409
++ E + N+D D Y V DF+ QL P + + S+T+ N+ M
Sbjct: 92 EN----TTAEEDFNID-DFYKLVKDFR-QLHVTPS--QIGENSPTGSALESNTTANVHMD 143
Query: 1408 VEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPVRRIVRSTRLLER 1229
VE V+ LA+ A SA EAAS+A+ ++ A L++ +S+ GL VRST+LLER
Sbjct: 144 VEPSDVLTLAKHALSASLEAASLAETSKSISAGLNESTSL-GLGWE--EETVRSTQLLER 200
Query: 1228 QTKR----RVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEE 1061
+ KR + K+ E + + RK+ EG +PNDPLR+FLWGPET QLLT KEE
Sbjct: 201 RRKRLKKRNLLNSKVPNYENSSSNSSDLRRKYREGLNPNDPLRLFLWGPETRQLLTLKEE 260
Query: 1060 SELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIY 881
+ELI ++Q++ KL+ V+SRL++QF REPTL+EWAEA G SC +LQSQ+ CG SSR+KLIY
Sbjct: 261 TELIARVQDVFKLEAVKSRLQSQFGREPTLIEWAEAVGISCQMLQSQLRCGTSSREKLIY 320
Query: 880 ANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRK 701
+N RMVVHIAKQYQGRGL LQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWW+RQ+IRK
Sbjct: 321 SNLRMVVHIAKQYQGRGLGLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWVRQTIRK 380
Query: 700 ALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTA 521
A+FQHSRTIRLPENVY+LL KV EAKKS +Q+GN P++E++A G+SVE+L KLLY
Sbjct: 381 AIFQHSRTIRLPENVYTLLGKVLEAKKSYIQEGNQNPSREELARRVGMSVEKLGKLLYCT 440
Query: 520 RVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRL 341
R+P+SMQQ VW DQ+TT+QE+TADT IE+P++ +KQ+MRQH RNLL L RER+IIRL
Sbjct: 441 RMPVSMQQTVWADQDTTFQEVTADTGIEIPDLSVAKQLMRQHVRNLLHTLEKRERQIIRL 500
Query: 340 RFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 179
R+GIE G+Q+SL+EIG FGLSKERVRQLESRA KLK+ L SQGL AYA +L+
Sbjct: 501 RYGIEDGKQRSLTEIGEIFGLSKERVRQLESRAFLKLKESLGSQGLGAYAPLLV 554
>ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
gi|557530787|gb|ESR41970.1| hypothetical protein
CICLE_v10011376mg [Citrus clementina]
Length = 558
Score = 563 bits (1452), Expect = e-158
Identities = 300/527 (56%), Positives = 386/527 (73%), Gaps = 12/527 (2%)
Frame = -2
Query: 1723 AVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQLLMAPGLSSREG 1547
+V S+ T+S+ R PTSVL+Q+QR+E RPLL + K D T Q T D R M E
Sbjct: 35 SVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRN--METEAFFVEE 92
Query: 1546 NKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEE--------QSFSSTSVNLMGVEADHV 1391
+ D D+ V D + Q L P+LW L +++ E QS S+ + + E
Sbjct: 93 KNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDA 152
Query: 1390 VALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPVRRI--VRSTRLLERQTKR 1217
VALAR+A SA KEAAS+A++ +L GA D S L P+ + VRSTR LER++K+
Sbjct: 153 VALARKALSASKEAASLAENPKLNGAEFTDISLTSSLG-YPLEEVKTVRSTRFLERRSKK 211
Query: 1216 R-VPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKI 1040
R V KPK+ ET + RK +K +EGFDPNDPLR+FLWGPET +LLTA EE ELI +I
Sbjct: 212 RKVSKPKVTNHETYNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQI 271
Query: 1039 QELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVV 860
Q+L++L++ +S+L++QF REPTL+ SC L+S++H GNSSR+KLI AN R+VV
Sbjct: 272 QDLIRLEKEKSKLQSQFGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVV 331
Query: 859 HIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSR 680
H+AKQYQGRG+ L DLLQEGSMGLMKSVEKFKPQAGCRFA+YAYWW+RQ+IRKA+FQHSR
Sbjct: 332 HVAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSR 391
Query: 679 TIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQ 500
TIRLPEN+Y+LLS+V EAK+ +Q+GNH P KED+A G++VE+LE+L++ R+PLSMQ
Sbjct: 392 TIRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQ 451
Query: 499 QPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGG 320
QPVW DQ+TT+QEITADT +E+P++ KQ+MRQH RNLL++LNP+ER I+RLRFGIE G
Sbjct: 452 QPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDG 511
Query: 319 EQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 179
+ KSLSE+G FGLSKERVRQLESRALY+LKQ L + YAD+LI
Sbjct: 512 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 558
>ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Glycine max]
Length = 575
Score = 551 bits (1419), Expect = e-154
Identities = 306/549 (55%), Positives = 393/549 (71%), Gaps = 23/549 (4%)
Frame = -2
Query: 1756 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQL 1580
SVL+LHEQ +P V S S+ + P SVL+ +QR+E RPLL + K D T Q L RQ+
Sbjct: 33 SVLMLHEQASPTVASWSSNFSAQNFPASVLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQM 92
Query: 1579 LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEEQSFSST----SVNLM 1412
++ E N + D+ V DF+ L P L YL S Q E + SST SV+L
Sbjct: 93 ---DTVTVHEENNTENADQVVLDFRKHLHHWPNLQYLLTSSQIGEVAASSTLEHVSVDLE 149
Query: 1411 ----GVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPV------- 1265
GV+ + V +LA++A S K+ +S+ +D + A DD S GLAS +
Sbjct: 150 RRPNGVQFNGV-SLAKKALSTSKQESSVVEDLKSIKA--DDDSIPFGLASTSLADPSIGR 206
Query: 1264 RRIVRSTRLLERQTK-RRVPKPKIEIQETNHRRKPESHRKF------NEGFDPNDPLRMF 1106
+ VRSTRLLER++K R+VPK K+ ET RK ++ K NE D +DPLR+F
Sbjct: 207 NKTVRSTRLLERRSKQRKVPKSKVIDDETYLARKDDAQEKLRAEKKKNEELDQDDPLRLF 266
Query: 1105 LWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQ 926
LWGPET QLLT ++ES+LI +IQ+L++L+EV++ L++QF REPT+ EWAE AG +C +LQ
Sbjct: 267 LWGPETKQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQ 326
Query: 925 SQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCR 746
SQ+H GN SR+KLI AN RMVVH+AK YQGRGLSLQDLLQEGSMGLMKSVEKF P AG R
Sbjct: 327 SQLHSGNRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSR 386
Query: 745 FATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAAC 566
F YA+WWIRQ+IRKA+F+HSRTIRLPE V+ LL KV EAKK +Q+GN +PTKE++A
Sbjct: 387 FGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFILLGKVMEAKKLYIQEGNLHPTKEELARR 446
Query: 565 AGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRN 386
G++VE+++KLL++AR+P+SMQQ VW DQNTT+QEITAD T+E +V KQ+MR+H N
Sbjct: 447 VGVTVEKIDKLLFSARIPISMQQTVWADQNTTFQEITADPTVEATDVTVEKQLMRRHVLN 506
Query: 385 LLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQG 206
+LSVL+P+ER+IIRLR+G E GEQKSLSEIG FGLSKERVRQLE RALYKLK+CL QG
Sbjct: 507 VLSVLHPKERRIIRLRYGFEDGEQKSLSEIGDIFGLSKERVRQLEIRALYKLKKCLVKQG 566
Query: 205 LEAYADMLI 179
L+AY D+L+
Sbjct: 567 LDAYVDLLL 575
>ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Glycine max]
Length = 554
Score = 540 bits (1392), Expect = e-151
Identities = 293/550 (53%), Positives = 388/550 (70%), Gaps = 24/550 (4%)
Frame = -2
Query: 1756 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCLKADSTYQQTLDKRQLL 1577
SV +LHEQ PAV S S++S + PTSVL+Q+QR+E +P L + T TL+ RQ+
Sbjct: 15 SVTMLHEQAAPAVASWSSSSAAQHFPTSVLLQEQRDEYKPFLHVHNKET---TLNTRQMD 71
Query: 1576 MAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEEQSFSSTSVNLMGVEAD 1397
M S E + D+ V+DF QL R L L + +++S+ L V+ D
Sbjct: 72 MT---SVHEKGNTSNADQLVHDFVQQLHLRSHLQNLLTC--SPTRGIAASSI-LQPVDID 125
Query: 1396 ----------HVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPV------ 1265
+ V+LA++A SA K+A S + +L DDP GLAS +
Sbjct: 126 SEWPADGVPRNAVSLAQQALSASKQAVSTTGEMKLIEIDDDDPLP-SGLASTSLTDSSLK 184
Query: 1264 -RRIVRSTRLLERQTK-RRVPKPKIEIQETNHRRKPESHR------KFNEGFDPNDPLRM 1109
++VRSTR++ER +K R+ K K +E+ RK + R K EG+DPNDPLR+
Sbjct: 185 KNKVVRSTRIIERLSKQRKSSKSKFLDEESYLERKSDVQRRLRLEKKLKEGYDPNDPLRL 244
Query: 1108 FLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVL 929
FL GPE+ QLLT +EES+LI ++Q+L +L+EV+ RL+TQ REPTL EWA+A G SC+ L
Sbjct: 245 FLSGPESRQLLTREEESQLITQLQDLSRLEEVKIRLQTQLRREPTLAEWADAVGHSCYAL 304
Query: 928 QSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGC 749
Q+Q+HC N S++KL +AN RMVVHIAK YQGRGLSLQDL QEGS GLMKS+EKFKP+AGC
Sbjct: 305 QTQLHCANRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQEGSTGLMKSIEKFKPEAGC 364
Query: 748 RFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAA 569
RF TYAYWWIR ++RKA+F HSRTIRLPEN+Y+LL KV EAKKS +Q+GN +PTKE++A
Sbjct: 365 RFGTYAYWWIRHAVRKAIFLHSRTIRLPENLYTLLGKVIEAKKSYIQEGNLHPTKEELAR 424
Query: 568 CAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTR 389
G+++E+++ LL+ +R P+SMQQ VW DQ+TT+QEITAD+ IE+P+V SKQ+MR H
Sbjct: 425 KVGITIEKMDNLLFASRNPISMQQTVWADQDTTFQEITADSAIEIPDVTVSKQLMRMHVH 484
Query: 388 NLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQ 209
NLL++L+P+ER IIRLRFGIE GE+K+LS+IG FGL+KERVRQLESRAL KL+QCL SQ
Sbjct: 485 NLLNILSPKERGIIRLRFGIEDGEEKTLSDIGKVFGLTKERVRQLESRALLKLRQCLESQ 544
Query: 208 GLEAYADMLI 179
GL+AY D+L+
Sbjct: 545 GLDAYTDLLV 554
>ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Cucumis sativus] gi|449482444|ref|XP_004156283.1|
PREDICTED: RNA polymerase sigma factor sigF,
chloroplastic-like [Cucumis sativus]
Length = 562
Score = 540 bits (1392), Expect = e-151
Identities = 296/535 (55%), Positives = 384/535 (71%), Gaps = 10/535 (1%)
Frame = -2
Query: 1756 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLL-CLKADSTYQQTLDKRQL 1580
SV + EQ +PA R TS L Q+Q +E RP LK D + Q TL++R
Sbjct: 42 SVYMFPEQASPA----------RYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERR-- 89
Query: 1579 LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEE--------QSFSSTS 1424
L+ + EG+++ D D + + + Q + P L W +Q EE +S+++
Sbjct: 90 LIERSVPIDEGSRD-DHDHLIWELKHQAVEWPGLLSSWPPVQMEEYKISSIEKESYNAAG 148
Query: 1423 VNLMGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPVRRIVRST 1244
L+ E ++V+ALA++A SA K+AA + + L G LD S L+ R VRST
Sbjct: 149 EMLVKDEPENVIALAKKALSASKQAALLVDETELVGTSLDYSSLDDSLSKEG--RTVRST 206
Query: 1243 RLLERQTKRR-VPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAK 1067
RL +R++K+R VPK I E ++ R +S RK +E FDPNDPLR+FLWGPET +LLTA+
Sbjct: 207 RLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQ 266
Query: 1066 EESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKL 887
EESELIV+IQ+LM L V++RL++QF REPTLVEWAEA G +C LQSQ+H +SR+KL
Sbjct: 267 EESELIVQIQDLMILDNVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKL 326
Query: 886 IYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSI 707
I AN RMVVHIAKQYQGRGLSL DLLQ GS+GLMKSVEKFKPQAGCRF +YAYWWIR SI
Sbjct: 327 INANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSI 386
Query: 706 RKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLY 527
KA+FQHSRTIRLPENVY+LL KV EAK V+ GN+ P+KE++AA G++VER +KL++
Sbjct: 387 TKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMF 446
Query: 526 TARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKII 347
+R+P S+QQPVW DQ TT+QEITAD+ ++ P+V +++MR+H RNLLS+L+P+ER+II
Sbjct: 447 MSRIPRSLQQPVWADQETTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRII 506
Query: 346 RLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADML 182
RLRFGIE G +K+L EIG FGLSKERVRQLE+RALYKLK+C +SQGL AYAD+L
Sbjct: 507 RLRFGIEDGREKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLL 561
>ref|NP_565856.1| RNA polymerase sigma factor sigF [Arabidopsis thaliana]
gi|75173811|sp|Q9LD95.1|SIGF_ARATH RecName: Full=RNA
polymerase sigma factor sigF, chloroplastic; Short=Sigma
factor F; Short=Sigma-F; AltName: Full=Protein SINGLET
OXYGEN-LINKED DEATH ACTIVATOR 8; AltName: Full=RNA
polymerase sigma factor sig6; Short=Atsig6; Short=Sigma
factor 6; Flags: Precursor gi|7209640|dbj|BAA92288.1|
SigF [Arabidopsis thaliana] gi|7688083|emb|CAB89775.1|
sigma factor-like protein [Arabidopsis thaliana]
gi|16604647|gb|AAL24116.1| putative RNA polymerase
sigma-70 factor [Arabidopsis thaliana]
gi|20197948|gb|AAD31584.2| putative RNA polymerase
sigma-70 factor [Arabidopsis thaliana]
gi|20259557|gb|AAM14121.1| putative RNA polymerase
sigma-70 factor protein [Arabidopsis thaliana]
gi|330254238|gb|AEC09332.1| RNA polymerase sigma factor
sigF [Arabidopsis thaliana]
Length = 547
Score = 540 bits (1390), Expect = e-150
Identities = 300/531 (56%), Positives = 376/531 (70%), Gaps = 5/531 (0%)
Frame = -2
Query: 1756 SVLLLHEQVT-PAVTSLSTTSLGRPPPTSVLIQDQRNESRPLL-CLKADSTYQQTLDKRQ 1583
SV++LH+Q T P V S SL R P SVL Q+ R ESRPL L+ D T Q TL++RQ
Sbjct: 29 SVVMLHDQTTTPVVNSRHLNSLSRHFPASVLSQEPREESRPLSHALRDDRTSQLTLERRQ 88
Query: 1582 LLMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEEQSFSSTSVNLMGVE 1403
+SSRE K F+ QLL LW L S E + L E
Sbjct: 89 FDEL--VSSREDEK----------FEQQLLHSTGLWNLLISPLTSETKLPAVVSPLADAE 136
Query: 1402 ADHVVALAREAFSACKEAASIAKDARLFGA-HLDDPSSIRGLASVPVR-RIVRSTRLLER 1229
VVALA++A SA K+AA + D + ++ D S S+P + IVRS R LER
Sbjct: 137 LCDVVALAQKALSASKQAALLVDDTEANPSDNIKDSLSTSSSMSLPEKGNIVRSKRQLER 196
Query: 1228 QTK-RRVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESEL 1052
+ K RR PK E +K + +K+ +G D +D L++FLWGPET QLLTAKEE+EL
Sbjct: 197 RAKNRRAPKSNDVDDEGYVPQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAEL 256
Query: 1051 IVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANF 872
I IQ L+KL++V+++LE+Q EPT+ EWAEA G S VL+S +H G SSR+KLI AN
Sbjct: 257 ISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANL 316
Query: 871 RMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALF 692
R+VVHIAKQYQ RGL+ QDLLQEGSMGLMKSVEKFKPQ+GCRFATYAYWWIRQSIRK++F
Sbjct: 317 RLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIF 376
Query: 691 QHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVP 512
Q+SRTIRLPENVY LL KV EA+K+CVQ+GN+ P+KE++A G+S E+L+KLLY R P
Sbjct: 377 QNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTP 436
Query: 511 LSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFG 332
LSMQQP+W DQ+TT+QEIT D+ IE P + KQ+MR H RNLL+VL+P+ER+II+LRFG
Sbjct: 437 LSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFG 496
Query: 331 IEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 179
I+GG+Q+SLSEIG +GLSKERVRQLESRALY+LKQ ++S GL AYAD+L+
Sbjct: 497 IDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAYADLLV 547