BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00004457
         (702 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   162   1e-37
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...   152   1e-34
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc...   152   1e-34
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   149   6e-34
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     145   2e-32
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   145   2e-32
emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]         143   5e-32
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     142   8e-32
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     141   2e-31
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]           140   5e-31
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   136   6e-30
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   136   6e-30
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   136   6e-30
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           136   6e-30
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   136   7e-30
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   135   1e-29
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   135   1e-29
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   133   5e-29
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   130   5e-28
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   129   7e-28

>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  162 bits (409), Expect = 1e-37
 Identities = 91/234 (38%), Positives = 130/234 (55%), Gaps = 1/234 (0%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGY 182
            A +LINRSPS  L+ K P+  ++GK  D+ +LKVFGC A+VH + DKLEPR+ KC+FLGY
Sbjct: 586  AVHLINRSPSSALQFKTPQEKWTGKAADYQHLKVFGCTAYVHTKTDKLEPRAVKCIFLGY 645

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPNKVEQLLGLSHI 362
            P+GVKGY+LW+  +   K I SRDV FNE D         + +  PA + VE L  L   
Sbjct: 646  PKGVKGYKLWIETQGKGKCIISRDVTFNEQD---------MSKQTPAKD-VEGLDQLQFE 695

Query: 363  DETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEE-LGNYQLARD 539
             E E L                      +   +    +++V    NEP + L +Y L RD
Sbjct: 696  VEHETLQ-----------------PEKSKETSSKTAQEEIVHERQNEPTQGLESYNLVRD 738

Query: 540  RTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLNAMHE 701
            R +R ++ P R+   +M ++  SV E I + EPKTYQ+A+ S  + +W+ A+ E
Sbjct: 739  RQKRQVKPPKRYGQAEMTAFALSVAEEIVDMEPKTYQEAINSNEADQWVKAIQE 792


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
            gi|20087076|gb|AAM10749.1|AC112514_2 Putative
            retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score =  152 bits (384), Expect = 1e-34
 Identities = 89/239 (37%), Positives = 130/239 (54%), Gaps = 6/239 (2%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGY 182
            A YLINRSPS  +  K P  V+SG   ++S+L+VFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 589  ACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFGCIAYAHVDNSKLEPRAIKCIFLGY 648

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSATMPLPESEPAPNKVEQLLG 350
            P GVKGY+LW       K + SR+V+F+ES    D P  S  +P+   E A  +VE L+ 
Sbjct: 649  PSGVKGYKLWCPETK--KVVISRNVVFHESVMLHDKP--STNVPVESQEKASVQVEHLIS 704

Query: 351  LSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQL 530
              H  E EN+ +                     N+D   + D    +    P+    + +
Sbjct: 705  SGHAPEKENVAI---------------------NLDAPVIEDSDSSIVQQSPK----HSI 739

Query: 531  ARDRTRRNIRQPTRF-DDFQMISYVFSVFESID-NCEPKTYQDALKSEHSQEWLNAMHE 701
            A+D+ +RNI+ P R+ ++  +++Y  SV E I+ N EP TY DA+ S+    W+ AMH+
Sbjct: 740  AKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNVEPSTYSDAIVSDDCNRWITAMHD 798


>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1262

 Score =  152 bits (384), Expect = 1e-34
 Identities = 89/239 (37%), Positives = 130/239 (54%), Gaps = 6/239 (2%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGY 182
            A YLINRSPS  +  K P  V+SG   ++S+L+VFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 626  ACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFGCIAYAHVDNSKLEPRAIKCIFLGY 685

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSATMPLPESEPAPNKVEQLLG 350
            P GVKGY+LW       K + SR+V+F+ES    D P  S  +P+   E A  +VE L+ 
Sbjct: 686  PSGVKGYKLWCPETK--KVVISRNVVFHESVMLHDKP--STNVPVESQEKASVQVEHLIS 741

Query: 351  LSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQL 530
              H  E EN+ +                     N+D   + D    +    P+    + +
Sbjct: 742  SGHAPEKENVAI---------------------NLDAPVIEDSDSSIVQQSPK----HSI 776

Query: 531  ARDRTRRNIRQPTRF-DDFQMISYVFSVFESID-NCEPKTYQDALKSEHSQEWLNAMHE 701
            A+D+ +RNI+ P R+ ++  +++Y  SV E I+ N EP TY DA+ S+    W+ AMH+
Sbjct: 777  AKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNVEPSTYSDAIVSDDCNRWITAMHD 835


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  149 bits (377), Expect = 6e-34
 Identities = 88/239 (36%), Positives = 128/239 (53%), Gaps = 6/239 (2%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGY 182
            A YLINRSPS  +  K P  V+SG   ++S+L+VFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 835  ACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGY 894

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSATMPLPESEPAPNKVEQLLG 350
            P GVKGY+LW       K + SR+V+F+ES    D P  S  +P+   E A  +VE L+ 
Sbjct: 895  PSGVKGYKLWCPETK--KVVISRNVVFHESVMLHDKP--STNVPVESQEKASVQVEHLIS 950

Query: 351  LSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQL 530
              H  E E++ +                     N D   + D    +    P+      +
Sbjct: 951  SGHAPEKEDVAI---------------------NQDEPVIEDSNSSIVQQSPKR----SI 985

Query: 531  ARDRTRRNIRQPTRF-DDFQMISYVFSVFESID-NCEPKTYQDALKSEHSQEWLNAMHE 701
            A+DR +RNI+ P R+ ++  +++Y  SV E I+ N EP TY +A+ S+    W+ AMH+
Sbjct: 986  AKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHD 1044


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  145 bits (365), Expect = 2e-32
 Identities = 86/237 (36%), Positives = 127/237 (53%), Gaps = 6/237 (2%)
 Frame = +3

Query: 9    YLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGYPE 188
            YLINRSPS     K P  V+SG   ++S+L+VFGC A+ H    KLEPR+ KC+FLGYP 
Sbjct: 665  YLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPS 724

Query: 189  GVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSATMPLPESEPAPNKVEQLLGLS 356
            GVKGY+LW       K + SR+V+F+ES    D P  S  +P+   E A  +VE L+   
Sbjct: 725  GVKGYKLWCPETK--KVVISRNVVFHESVILHDKP--STNVPVESQEKASVQVEHLISSG 780

Query: 357  HIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQLAR 536
            H  E EN+ +                     N D   + D     + +  ++     +A+
Sbjct: 781  HAPEKENVAI---------------------NQDAPVIEDS----DSSIVQQSSKRSIAK 815

Query: 537  DRTRRNIRQPTRF-DDFQMISYVFSVFESID-NCEPKTYQDALKSEHSQEWLNAMHE 701
            D+ +RNI+ P R+ ++  +++Y  SV E I+ N EP TY +A+ S+    W+ AMH+
Sbjct: 816  DKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHD 872


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  145 bits (365), Expect = 2e-32
 Identities = 86/237 (36%), Positives = 127/237 (53%), Gaps = 6/237 (2%)
 Frame = +3

Query: 9    YLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGYPE 188
            YLINRSPS     K P  V+SG   ++S+L+VFGC A+ H    KLEPR+ KC+FLGYP 
Sbjct: 665  YLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPS 724

Query: 189  GVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSATMPLPESEPAPNKVEQLLGLS 356
            GVKGY+LW       K + SR+V+F+ES    D P  S  +P+   E A  +VE L+   
Sbjct: 725  GVKGYKLWCPETK--KVVISRNVVFHESVILHDKP--STNVPVESQEKASVQVEHLISSG 780

Query: 357  HIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQLAR 536
            H  E EN+ +                     N D   + D     + +  ++     +A+
Sbjct: 781  HAPEKENVAI---------------------NQDAPVIEDS----DSSIVQQSSKRSIAK 815

Query: 537  DRTRRNIRQPTRF-DDFQMISYVFSVFESID-NCEPKTYQDALKSEHSQEWLNAMHE 701
            D+ +RNI+ P R+ ++  +++Y  SV E I+ N EP TY +A+ S+    W+ AMH+
Sbjct: 816  DKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHD 872


>emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]
          Length = 1007

 Score =  143 bits (361), Expect = 5e-32
 Identities = 85/239 (35%), Positives = 126/239 (52%), Gaps = 6/239 (2%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGY 182
            A YLINRSPS  +  K P  V+S   +++S+L+VFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 410  ACYLINRSPSYAIDKKTPIEVWSDSPVNYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGY 469

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSATMPLPESEPAPNKVEQLLG 350
            P G+KGY+LW       K + SR+V+F+ES    D P  S  +P+   E A  +VE L+ 
Sbjct: 470  PSGMKGYKLWCPKTK--KVVISRNVVFHESVMLHDKP--STNVPVESQEKASVQVEHLIS 525

Query: 351  LSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQL 530
              H  E EN+ +                     N D   + D         P+      +
Sbjct: 526  SGHAPEKENVAI---------------------NQDVPVIEDSDSSTVQQSPKRF----I 560

Query: 531  ARDRTRRNIRQPTRF-DDFQMISYVFSVFESID-NCEPKTYQDALKSEHSQEWLNAMHE 701
            A+D+ +RN + P R+ ++  +++Y  SV E I+ N EP TY +A+ S+    W+ AMH+
Sbjct: 561  AKDKPKRNTKPPQRYIEEANIVAYALSVAEDIEGNAEPSTYSEAIVSDDCNRWITAMHD 619


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  142 bits (359), Expect = 8e-32
 Identities = 85/239 (35%), Positives = 127/239 (53%), Gaps = 6/239 (2%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGY 182
            A YLINRSP   +  K P  V+SG   ++S+L+VFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 600  ACYLINRSPGYAIDKKTPIEVWSGSPTNYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGY 659

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSATMPLPESEPAPNKVEQLLG 350
              GVKGY+LW       K + SR+V+F+ES    D P  S  +P+   E A  +VE L+ 
Sbjct: 660  ASGVKGYKLWCPETK--KVVISRNVVFHESVILHDKP--STNVPVESQEKASVQVEHLIS 715

Query: 351  LSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQL 530
              H  E E++ +                     N D   + D    +    P+      +
Sbjct: 716  SGHAPEKEDVAI---------------------NQDAPVIEDSDSSIVHQSPKR----SI 750

Query: 531  ARDRTRRNIRQPTRF-DDFQMISYVFSVFESID-NCEPKTYQDALKSEHSQEWLNAMHE 701
            A+D+ +RNI+ P R+ ++ ++++Y  SV E I+ N EP TY +A+ S+    W+ AMH+
Sbjct: 751  AKDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTYSEAIVSDDCNRWITAMHD 809


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  141 bits (356), Expect = 2e-31
 Identities = 86/239 (35%), Positives = 124/239 (51%), Gaps = 6/239 (2%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGY 182
            A YLINRSPS  +  K P  V+SG   ++S+L+VFGC A+ H    KLEPR  KC+FLGY
Sbjct: 537  ACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRVIKCIFLGY 596

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSATMPLPESEPAPNKVEQLLG 350
              GVKGY+LW       K + SR+V+F+ES    D P  S  +P+   E    +VE L+ 
Sbjct: 597  LSGVKGYKLWCPETK--KVVISRNVVFHESIMLHDKP--STNVPVESQEKVSVQVEHLIS 652

Query: 351  LSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQL 530
              H  E E++ +                     N D   + D    +    P+      +
Sbjct: 653  SGHAPEKEDVAI---------------------NQDAPVIEDSDSSIVQQSPKR----SI 687

Query: 531  ARDRTRRNIRQPTRF-DDFQMISYVFSVFESID-NCEPKTYQDALKSEHSQEWLNAMHE 701
            A+DR +RN + P R+ ++  +++Y  SV E I+ N EP TY DA+ S+    W+ AMH+
Sbjct: 688  AKDRPKRNTKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHD 746


>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
          Length = 1009

 Score =  140 bits (352), Expect = 5e-31
 Identities = 84/239 (35%), Positives = 124/239 (51%), Gaps = 6/239 (2%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGY 182
            A YLINRSPS  +  K P  V+S     +S+L+VF C A+ H    KLEPR+ KC+FLGY
Sbjct: 449  ACYLINRSPSYAIDKKTPIEVWSSSPAKYSDLRVFSCTAYAHVDNGKLEPRAIKCIFLGY 508

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSATMPLPESEPAPNKVEQLLG 350
            P GVKGY+LW       K + +R+V+F+ES    D P  S  +P+   E A  +VE L+ 
Sbjct: 509  PSGVKGYKLWCPETK--KVVINRNVVFHESVMLHDKP--STNVPVESQEKASVQVEHLIS 564

Query: 351  LSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQL 530
              H  E E++ +                     N D   + D    +    P+      +
Sbjct: 565  SGHAPEKEDVAI---------------------NQDAPVIEDSDSSIVQQSPKR----SI 599

Query: 531  ARDRTRRNIRQPTRF-DDFQMISYVFSVFESID-NCEPKTYQDALKSEHSQEWLNAMHE 701
            A+DR +RN + P ++ ++  +++Y  SV E I+ N EP TY DA+ S+    W+ AMH+
Sbjct: 600  AKDRPKRNTKPPRKYIEEANIVTYALSVAEEIEGNTEPSTYSDAIVSDDCNRWITAMHD 658


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  136 bits (343), Expect = 6e-30
 Identities = 90/243 (37%), Positives = 128/243 (52%), Gaps = 10/243 (4%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGY 182
            A YLINRSPS+PL  K P  V+SG   D+S LKVFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 620  ACYLINRSPSIPLNKKTPIEVWSGMPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGY 679

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPNKVEQLLGL--S 356
              GVKGY+LW   E G K   SR V+FNES    +  T  LP SE  P K  Q + +   
Sbjct: 680  GSGVKGYKLW-NPETG-KTFMSRSVVFNES----VMFTNSLP-SEHVPEKELQRMHMQVE 732

Query: 357  HIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDD------LVDLNDNEPEELG 518
            H+D+   + V                     +V + + HDD      ++ L +  P    
Sbjct: 733  HVDDDTGVQVEPVHEQDDHN----------NDVADDDAHDDVQQTPPILQLEEELP---- 778

Query: 519  NYQLARDRTRRNIRQPTR-FDDFQMISYVFSVFESIDNC-EPKTYQDALKSEHSQEWLNA 692
               +A+ +++R  + P R  ++  +  Y  S  E ++N  EP TY++A++   S+ W++A
Sbjct: 779  ---IAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISA 835

Query: 693  MHE 701
            MHE
Sbjct: 836  MHE 838


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  136 bits (343), Expect = 6e-30
 Identities = 90/243 (37%), Positives = 128/243 (52%), Gaps = 10/243 (4%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGY 182
            A YLINRSPS+PL  K P  V+SG   D+S LKVFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 620  ACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGY 679

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPNKVEQLLGL--S 356
              GVKGY+LW   E G K   SR V+FNES    +  T  LP SE  P K  Q + +   
Sbjct: 680  GSGVKGYKLW-NPETG-KTFMSRSVVFNES----VMFTNSLP-SEHVPEKELQRMHMQVE 732

Query: 357  HIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDD------LVDLNDNEPEELG 518
            H+D+   + V                     +V + + HDD      ++ L +  P    
Sbjct: 733  HVDDDTGVQVEPVHEQDDHN----------NDVADDDAHDDVQQTPPILQLEEELP---- 778

Query: 519  NYQLARDRTRRNIRQPTR-FDDFQMISYVFSVFESIDNC-EPKTYQDALKSEHSQEWLNA 692
               +A+ +++R  + P R  ++  +  Y  S  E ++N  EP TY++A++   S+ W++A
Sbjct: 779  ---IAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISA 835

Query: 693  MHE 701
            MHE
Sbjct: 836  MHE 838


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
            gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
            Japonica Group]
          Length = 1601

 Score =  136 bits (343), Expect = 6e-30
 Identities = 83/225 (36%), Positives = 120/225 (53%), Gaps = 6/225 (2%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGY 182
            A YLINRSPS  +  K P  V+SG   ++S+L+VFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 628  ACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGY 687

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSATMPLPESEPAPNKVEQLLG 350
            P GVKGY+LW       K + SR+V+F+ES    D P  S  +P+   E A  +VE L+ 
Sbjct: 688  PSGVKGYKLWCPETK--KVVISRNVVFHESVMLHDKP--STNVPVESQEKASVQVEHLIS 743

Query: 351  LSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQL 530
              H  E E++ +                     N D   + D    +    P+      +
Sbjct: 744  SGHAPEKEDVAI---------------------NQDEPVIEDSNSSIVQQSPKR----SI 778

Query: 531  ARDRTRRNIRQPTRF-DDFQMISYVFSVFESID-NCEPKTYQDAL 659
            A+DR +RNI+ P R+ ++  +++Y  SV E I+ N EP TY +A+
Sbjct: 779  AKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAI 823


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  136 bits (343), Expect = 6e-30
 Identities = 93/246 (37%), Positives = 129/246 (52%), Gaps = 13/246 (5%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGY 182
            A YLINRSPS+PL  K P  V+SG   D+S LKVFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 622  ACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGY 681

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPNKVEQLLGL--S 356
              GVKGY+LW   E G K   SR V+FNES    +  T  LP SE  P K  Q + +   
Sbjct: 682  GSGVKGYKLW-NPETG-KTFMSRSVVFNES----VMFTNSLP-SEHVPEKELQRMHMQVE 734

Query: 357  HIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLV---DLNDNEPEELGNYQ 527
            H+D+   + V                    E VD  + H++ V   D +D+  +     Q
Sbjct: 735  HVDDDTGVQV--------------------EPVDEQDDHNNDVADDDAHDDVQQTPPILQ 774

Query: 528  LARD------RTRRNIRQPTR-FDDFQMISYVFSVFESIDNC-EPKTYQDALKSEHSQEW 683
            L  D      +++R  + P R  ++  +  Y  S  E ++N  EP TY++A++   S+ W
Sbjct: 775  LEEDLSIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENW 834

Query: 684  LNAMHE 701
            ++AMHE
Sbjct: 835  ISAMHE 840


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  136 bits (342), Expect = 7e-30
 Identities = 90/243 (37%), Positives = 128/243 (52%), Gaps = 10/243 (4%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGY 182
            A YLINRSPS+PL  K P  V+SG   D+S LKVFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 620  ACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGY 679

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPNKVEQLLGL--S 356
              GVKGY+LW   E G K   SR V+FNES    +  T  LP SE  P K  Q + +   
Sbjct: 680  GSGVKGYKLW-NPETG-KTFMSRSVVFNES----VMFTNSLP-SEHVPEKELQRMHMQVE 732

Query: 357  HIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDD------LVDLNDNEPEELG 518
            H+D+   + V                     +V + + HDD      ++ L +  P    
Sbjct: 733  HVDDYTGVQVEPVHEQDDHN----------NDVADDDAHDDVQQTPPILQLEEELP---- 778

Query: 519  NYQLARDRTRRNIRQPTR-FDDFQMISYVFSVFESIDNC-EPKTYQDALKSEHSQEWLNA 692
               +A+ +++R  + P R  ++  +  Y  S  E ++N  EP TY++A++   S+ W++A
Sbjct: 779  ---IAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISA 835

Query: 693  MHE 701
            MHE
Sbjct: 836  MHE 838


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  135 bits (340), Expect = 1e-29
 Identities = 84/239 (35%), Positives = 121/239 (50%), Gaps = 6/239 (2%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGY 182
            AAYL+NRSPS  +  K P+ V+SGK  ++S LK+FGC A+ H    KLEPR+ KC+FLGY
Sbjct: 727  AAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGY 786

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPNKVEQLLGLSHI 362
              GVKGYRLW   +   K I SRDV F+ES                   +   L G S  
Sbjct: 787  ATGVKGYRLWCTEDRTPKFIISRDVTFDES------------AMFGQRKEFGDLAGTSKT 834

Query: 363  DETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQLARDR 542
            D   N  V                  M   VD+      ++D ND++        +A  R
Sbjct: 835  DLGANQKV-----------EFEVDAPMENGVDDTSEEQPVIDQNDSQ-------SIAAHR 876

Query: 543  TRRNIRQPTRFDD------FQMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLNAMHE 701
             RR IR+P R+ D         +++  +V E I   EP++Y++A++S+ S++WL++M +
Sbjct: 877  PRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKEAMESKDSKKWLSSMDD 935


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  135 bits (340), Expect = 1e-29
 Identities = 84/239 (35%), Positives = 121/239 (50%), Gaps = 6/239 (2%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGY 182
            AAYL+NRSPS  +  K P+ V+SGK  ++S LK+FGC A+ H    KLEPR+ KC+FLGY
Sbjct: 940  AAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGY 999

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPNKVEQLLGLSHI 362
              GVKGYRLW   +   K I SRDV F+ES                   +   L G S  
Sbjct: 1000 ATGVKGYRLWCTEDRTPKFIISRDVTFDES------------AMFGQRKEFGDLAGTSKT 1047

Query: 363  DETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQLARDR 542
            D   N  V                  M   VD+      ++D ND++        +A  R
Sbjct: 1048 DLGANQKV-----------EFEVDAPMENGVDDTSEEQPVIDQNDSQ-------SIAAXR 1089

Query: 543  TRRNIRQPTRFDD------FQMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLNAMHE 701
             RR IR+P R+ D         +++  +V E I   EP++Y++A++S+ S++WL++M +
Sbjct: 1090 PRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKEAMESKDSKKWLSSMDD 1148


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  133 bits (335), Expect = 5e-29
 Identities = 81/232 (34%), Positives = 121/232 (52%), Gaps = 1/232 (0%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGY 182
            A YLINR P   ++ K P  ++SGK  D+SNLK FGC A+ H    KLEPR+KK VF+GY
Sbjct: 606  ACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGY 665

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPNKVEQLLGLSHI 362
             +GVKG+R+W   E   + I SR+V+F+ES    L  T+  P +      +++ +    I
Sbjct: 666  GDGVKGFRIWSPAEK--RVIMSRNVVFDESP---LLRTIVKPTTTSETGSLDKQVEFQVI 720

Query: 363  DETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQLARDR 542
                +L                     PE  D     +   D+ ++ P ++ +  +A+DR
Sbjct: 721  QNESDL-------------------KEPEEEDQEPQTE--TDIPESMPSDI-HQSIAQDR 758

Query: 543  TRR-NIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLNAM 695
             RR  +R PTR+    M+ Y   V E +D  EP TY++A+ S  S++W  AM
Sbjct: 759  PRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAM 810


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  130 bits (326), Expect = 5e-28
 Identities = 82/237 (34%), Positives = 122/237 (51%), Gaps = 4/237 (1%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGY 182
            A YLINRSPS+PL  K P  ++SG   D+S L+VFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 621  ACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNGKLEPRAIKCLFLGY 680

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPNKVEQLLG--LS 356
              GVKGY+LW       K   SR+VIFNE  F   + ++P        ++ +Q +   + 
Sbjct: 681  GSGVKGYKLW--NPETNKTFMSRNVIFNE--FVMFNDSLPTDVIPGGSDEEQQYVSVQVE 736

Query: 357  HIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQLAR 536
            H+D+ E                      +  +V++   H   V    +EP       +A 
Sbjct: 737  HVDDQET-------------------EIVGNDVNDTVQHSPSVLQPQDEP-------IAH 770

Query: 537  DRTRRNIRQPTR-FDDFQMISYVFSVFESIDN-CEPKTYQDALKSEHSQEWLNAMHE 701
             RT+R+   P R  ++  M+ Y FS  E ++N  EP TY +A+ S   ++W++A+ E
Sbjct: 771  RRTKRSCGAPVRLIEECDMVYYAFSYAEQVENTLEPATYTEAVVSGDREKWISAIQE 827


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  129 bits (325), Expect = 7e-28
 Identities = 82/237 (34%), Positives = 122/237 (51%), Gaps = 4/237 (1%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQRGDKLEPRSKKCVFLGY 182
            A YLINRSPS+PL  K P  ++SG   D+S L+VFGC A+ H   +KLEPR+ KC+FLGY
Sbjct: 621  ACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNEKLEPRAIKCLFLGY 680

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPNKVEQLLG--LS 356
              GVKGY+LW       K   SR V+FNES     + ++P        ++ +Q +   + 
Sbjct: 681  GLGVKGYKLW--NPETNKTFMSRSVVFNES--VMFNDSLPTDVIPGGSDEEQQYVSVQVE 736

Query: 357  HIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQLAR 536
            H+D+ E                      +  +V++   H   V    +EP       +A 
Sbjct: 737  HVDDQET-------------------EIVGNDVNDTVQHSPPVLQPQDEP-------IAH 770

Query: 537  DRTRRNIRQPTR-FDDFQMISYVFSVFESIDN-CEPKTYQDALKSEHSQEWLNAMHE 701
             RT+R+   P R  ++  M+ Y FS  E ++N  EP TY +A+ S   ++W++AM E
Sbjct: 771  RRTKRSCGAPVRLIEECDMVYYAFSCAEQVENTLEPATYTEAVVSGDREKWISAMQE 827