BLASTX nr result
ID: Rehmannia24_contig00003280
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00003280
(678 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006841548.1| hypothetical protein AMTR_s00003p00168720 [A... 84 4e-14
gb|EOY11808.1| DEAD box RNA helicase isoform 1 [Theobroma cacao] 84 5e-14
ref|XP_006830167.1| hypothetical protein AMTR_s00244p00011780 [A... 80 6e-13
ref|XP_002278318.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 79 1e-12
ref|XP_006355275.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 79 2e-12
ref|XP_002330044.1| predicted protein [Populus trichocarpa] gi|5... 78 2e-12
gb|ABK96663.1| unknown [Populus trichocarpa x Populus deltoides] 78 2e-12
gb|EPS66084.1| hypothetical protein M569_08688 [Genlisea aurea] 78 3e-12
ref|XP_006382234.1| hypothetical protein POPTR_0005s00200g [Popu... 77 5e-12
ref|XP_002330040.1| predicted protein [Populus trichocarpa] 77 5e-12
gb|EMJ09551.1| hypothetical protein PRUPE_ppa001778mg [Prunus pe... 76 8e-12
ref|XP_006480316.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 76 1e-11
ref|XP_006423935.1| hypothetical protein CICLE_v10027858mg [Citr... 76 1e-11
ref|XP_004244948.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 74 4e-11
ref|XP_004135577.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 72 1e-10
ref|XP_006480315.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 72 2e-10
ref|XP_006423936.1| hypothetical protein CICLE_v10027858mg [Citr... 72 2e-10
ref|XP_003626109.1| DEAD-box ATP-dependent RNA helicase [Medicag... 72 2e-10
ref|XP_006382233.1| hypothetical protein POPTR_0005s00200g [Popu... 71 3e-10
ref|XP_006480317.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 70 6e-10
>ref|XP_006841548.1| hypothetical protein AMTR_s00003p00168720 [Amborella trichopoda]
gi|548843569|gb|ERN03223.1| hypothetical protein
AMTR_s00003p00168720 [Amborella trichopoda]
Length = 768
Score = 84.0 bits (206), Expect = 4e-14
Identities = 44/92 (47%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Frame = -3
Query: 598 DRRGFRSSRDW--SDDSGLEXXXXXXXXXXXXXXXXXXXXXXXXXSDWLIGDRRSSRSPS 425
DR GFR SR+W SD + DWLIG+RRS+RS S
Sbjct: 678 DRGGFRGSRNWGRSDSDDEDQFRRGGRNFRGGSSQSRNSWRSNDDDDWLIGNRRSNRSSS 737
Query: 424 FGGKDSRSFGGACFNCGRPGHRASECPSKKDY 329
FG +D RSFGGACF CGR GHRA++CPSK+D+
Sbjct: 738 FGSRD-RSFGGACFVCGRAGHRAADCPSKQDF 768
>gb|EOY11808.1| DEAD box RNA helicase isoform 1 [Theobroma cacao]
Length = 742
Score = 83.6 bits (205), Expect = 5e-14
Identities = 49/116 (42%), Positives = 53/116 (45%)
Frame = -3
Query: 676 GPPSDYYGXXXXXXXXXXXXXXXXSMDRRGFRSSRDWSDDSGLEXXXXXXXXXXXXXXXX 497
GP SDYYG DRRGFR SR WS +
Sbjct: 642 GPSSDYYGKFSSRDRSPRGISK----DRRGFRGSRSWSSGRNSDDEVRGGRSSWSRTSKS 697
Query: 496 XXXXXXXXXSDWLIGDRRSSRSPSFGGKDSRSFGGACFNCGRPGHRASECPSKKDY 329
DWLIG RRS RS S RSFGG+CFNCGRPGHRAS+CP K D+
Sbjct: 698 SRD-------DWLIGSRRSKRSSSH----DRSFGGSCFNCGRPGHRASDCPEKLDF 742
>ref|XP_006830167.1| hypothetical protein AMTR_s00244p00011780 [Amborella trichopoda]
gi|548836288|gb|ERM97583.1| hypothetical protein
AMTR_s00244p00011780 [Amborella trichopoda]
Length = 207
Score = 80.1 bits (196), Expect = 6e-13
Identities = 42/92 (45%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Frame = -3
Query: 598 DRRGFRSSRDW--SDDSGLEXXXXXXXXXXXXXXXXXXXXXXXXXSDWLIGDRRSSRSPS 425
DRR FR SR+W +D DWL+G+RRS+RS S
Sbjct: 117 DRRCFRGSRNWGRADSDDEYQFRRGGRNFRGGSNQSRNSWRSNDDDDWLVGNRRSNRSSS 176
Query: 424 FGGKDSRSFGGACFNCGRPGHRASECPSKKDY 329
FG +D RSFGGACF CGR GHRA++CPSK+D+
Sbjct: 177 FGSRD-RSFGGACFVCGRTGHRAADCPSKQDF 207
>ref|XP_002278318.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic
[Vitis vinifera] gi|296089875|emb|CBI39694.3| unnamed
protein product [Vitis vinifera]
Length = 764
Score = 79.0 bits (193), Expect = 1e-12
Identities = 47/120 (39%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Frame = -3
Query: 676 GPPSDYYGXXXXXXXXXXXXXXXXSMDRRGFRSSR----DWSDDSGLEXXXXXXXXXXXX 509
GP DYYG +RRG R SR W D
Sbjct: 649 GPAGDYYGRFSNRDRSSRGGSR----ERRGSRISRGRGSSWGSDDDGGDDLNRRGGRSFR 704
Query: 508 XXXXXXXXXXXXXSDWLIGDRRSSRSPSFGGKDSRSFGGACFNCGRPGHRASECPSKKDY 329
DWLIG RRS+RS S G RSFGG+CF CGR GHRASECP+K+DY
Sbjct: 705 SNNNWSRNLRTSEDDWLIGGRRSNRSSSSFGSRERSFGGSCFTCGRSGHRASECPNKRDY 764
>ref|XP_006355275.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Solanum tuberosum]
Length = 744
Score = 78.6 bits (192), Expect = 2e-12
Identities = 38/47 (80%), Positives = 41/47 (87%), Gaps = 1/47 (2%)
Frame = -3
Query: 466 DWLI-GDRRSSRSPSFGGKDSRSFGGACFNCGRPGHRASECPSKKDY 329
DWLI GDRRSSRS S G +D RSFGGACFNCGR GHRASECP+K+DY
Sbjct: 699 DWLISGDRRSSRSLSGGSRD-RSFGGACFNCGRSGHRASECPNKRDY 744
>ref|XP_002330044.1| predicted protein [Populus trichocarpa]
gi|566168507|ref|XP_006382239.1| hypothetical protein
POPTR_0005s00240g [Populus trichocarpa]
gi|550337590|gb|ERP60036.1| hypothetical protein
POPTR_0005s00240g [Populus trichocarpa]
Length = 775
Score = 78.2 bits (191), Expect = 2e-12
Identities = 51/121 (42%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Frame = -3
Query: 676 GPPSDYYGXXXXXXXXXXXXXXXXSMDRRGFRSSRDW-----SDDSGLEXXXXXXXXXXX 512
GPP D+YG R GFRSSR SDD G
Sbjct: 666 GPPGDFYGRFSSRDRPARGGPRG---QRGGFRSSRGRGSGRDSDDGGT----YRRGGRSN 718
Query: 511 XXXXXXXXXXXXXXSDWLIGDRRSSRSPSFGGKDSRSFGGACFNCGRPGHRASECPSKKD 332
DWLIG RRSSR PS RSFGG+CFNCGR GHRASECP+KKD
Sbjct: 719 SNENSWSQMSRSSGDDWLIGGRRSSRPPS----RDRSFGGSCFNCGRSGHRASECPNKKD 774
Query: 331 Y 329
+
Sbjct: 775 F 775
>gb|ABK96663.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 481
Score = 78.2 bits (191), Expect = 2e-12
Identities = 51/121 (42%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Frame = -3
Query: 676 GPPSDYYGXXXXXXXXXXXXXXXXSMDRRGFRSSRDW-----SDDSGLEXXXXXXXXXXX 512
GPP D+YG R GFRSSR SDD G
Sbjct: 372 GPPGDFYGRFSSRDRPARGGPRG---QRGGFRSSRGRGSGRDSDDGGT----YRRGGRSN 424
Query: 511 XXXXXXXXXXXXXXSDWLIGDRRSSRSPSFGGKDSRSFGGACFNCGRPGHRASECPSKKD 332
DWLIG RRSSR PS RSFGG+CFNCGR GHRASECP+KKD
Sbjct: 425 SNENSWSQMSRSSGDDWLIGGRRSSRPPS----RDRSFGGSCFNCGRSGHRASECPNKKD 480
Query: 331 Y 329
+
Sbjct: 481 F 481
>gb|EPS66084.1| hypothetical protein M569_08688 [Genlisea aurea]
Length = 775
Score = 77.8 bits (190), Expect = 3e-12
Identities = 36/47 (76%), Positives = 39/47 (82%), Gaps = 1/47 (2%)
Frame = -3
Query: 466 DWLIGDRRSSRSPSFGGKDSRSFGGACFNCGRPGHRASECP-SKKDY 329
DWLI DR SSRSPSFGG+D R FGGACF CGR GHRAS+CP S+ DY
Sbjct: 730 DWLINDRSSSRSPSFGGRD-RGFGGACFKCGRAGHRASDCPNSRSDY 775
>ref|XP_006382234.1| hypothetical protein POPTR_0005s00200g [Populus trichocarpa]
gi|550337585|gb|ERP60031.1| hypothetical protein
POPTR_0005s00200g [Populus trichocarpa]
Length = 774
Score = 77.0 bits (188), Expect = 5e-12
Identities = 49/117 (41%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Frame = -3
Query: 676 GPPSDYYGXXXXXXXXXXXXXXXXSMDRRGFRSSRD-----WSDDSGLEXXXXXXXXXXX 512
GPPSD+YG R GFRSSR +SDD G
Sbjct: 668 GPPSDFYGRFSSRDRPARGGPRG---QRGGFRSSRGQGSGRYSDDEGTNRRGGRSNSNEN 724
Query: 511 XXXXXXXXXXXXXXSDWLIGDRRSSRSPSFGGKDSRSFGGACFNCGRPGHRASECPS 341
DWL+G RRSSR S +DSRSFGG+CFNCGR GHRASECP+
Sbjct: 725 TRSWMSRSSGD----DWLVGGRRSSRPSS---RDSRSFGGSCFNCGRSGHRASECPN 774
>ref|XP_002330040.1| predicted protein [Populus trichocarpa]
Length = 735
Score = 77.0 bits (188), Expect = 5e-12
Identities = 49/117 (41%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Frame = -3
Query: 676 GPPSDYYGXXXXXXXXXXXXXXXXSMDRRGFRSSRD-----WSDDSGLEXXXXXXXXXXX 512
GPPSD+YG R GFRSSR +SDD G
Sbjct: 629 GPPSDFYGRFSSRDRPARGGPRG---QRGGFRSSRGQGSGRYSDDEGTNRRGGRSNSNEN 685
Query: 511 XXXXXXXXXXXXXXSDWLIGDRRSSRSPSFGGKDSRSFGGACFNCGRPGHRASECPS 341
DWL+G RRSSR S +DSRSFGG+CFNCGR GHRASECP+
Sbjct: 686 TRSWMSRSSGD----DWLVGGRRSSRPSS---RDSRSFGGSCFNCGRSGHRASECPN 735
>gb|EMJ09551.1| hypothetical protein PRUPE_ppa001778mg [Prunus persica]
Length = 766
Score = 76.3 bits (186), Expect = 8e-12
Identities = 46/123 (37%), Positives = 51/123 (41%), Gaps = 7/123 (5%)
Frame = -3
Query: 676 GPPSDYYGXXXXXXXXXXXXXXXXSMDRRGFRSSRDWSDDSGLEXXXXXXXXXXXXXXXX 497
GP +DYYG GFRSSR W G +
Sbjct: 648 GPVNDYYGRFSGRDRNSRRGGSRDRQGSSGFRSSRGWGSSDGADDSFRSGGRGGGRGGGR 707
Query: 496 XXXXXXXXXS-------DWLIGDRRSSRSPSFGGKDSRSFGGACFNCGRPGHRASECPSK 338
DWLIG R SSRS S RSFGG+CFNCGR GHRASECP+K
Sbjct: 708 SFGNSNSQSRTSRSTDDDWLIGGRPSSRSSS----RDRSFGGSCFNCGRSGHRASECPTK 763
Query: 337 KDY 329
+ Y
Sbjct: 764 QGY 766
>ref|XP_006480316.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like isoform X2 [Citrus sinensis]
Length = 767
Score = 75.9 bits (185), Expect = 1e-11
Identities = 41/83 (49%), Positives = 43/83 (51%)
Frame = -3
Query: 589 GFRSSRDWSDDSGLEXXXXXXXXXXXXXXXXXXXXXXXXXSDWLIGDRRSSRSPSFGGKD 410
GFRSSR W D DWLIG RSSRS S +D
Sbjct: 688 GFRSSRSWGSDDEDGFSSSRGGRSFRSGNNQGSRFSTSSDDDWLIGGSRSSRSSS---RD 744
Query: 409 SRSFGGACFNCGRPGHRASECPS 341
SRSFGGACFNCGR GHRASECP+
Sbjct: 745 SRSFGGACFNCGRSGHRASECPN 767
>ref|XP_006423935.1| hypothetical protein CICLE_v10027858mg [Citrus clementina]
gi|567862566|ref|XP_006423937.1| hypothetical protein
CICLE_v10027858mg [Citrus clementina]
gi|557525869|gb|ESR37175.1| hypothetical protein
CICLE_v10027858mg [Citrus clementina]
gi|557525871|gb|ESR37177.1| hypothetical protein
CICLE_v10027858mg [Citrus clementina]
Length = 779
Score = 75.9 bits (185), Expect = 1e-11
Identities = 41/83 (49%), Positives = 43/83 (51%)
Frame = -3
Query: 589 GFRSSRDWSDDSGLEXXXXXXXXXXXXXXXXXXXXXXXXXSDWLIGDRRSSRSPSFGGKD 410
GFRSSR W D DWLIG RSSRS S +D
Sbjct: 700 GFRSSRSWGSDDEDGFSSSRGGRSFRSGNNQGSRFSTSSDDDWLIGGSRSSRSSS---RD 756
Query: 409 SRSFGGACFNCGRPGHRASECPS 341
SRSFGGACFNCGR GHRASECP+
Sbjct: 757 SRSFGGACFNCGRSGHRASECPN 779
>ref|XP_004244948.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Solanum lycopersicum]
Length = 746
Score = 73.9 bits (180), Expect = 4e-11
Identities = 36/49 (73%), Positives = 40/49 (81%), Gaps = 3/49 (6%)
Frame = -3
Query: 466 DWLIG---DRRSSRSPSFGGKDSRSFGGACFNCGRPGHRASECPSKKDY 329
DWLI D+RSSRS S G +D RSFGGACFNCGR GHRASECP+K+DY
Sbjct: 699 DWLISGDRDKRSSRSFSGGSRD-RSFGGACFNCGRSGHRASECPNKRDY 746
>ref|XP_004135577.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Cucumis sativus]
Length = 748
Score = 72.4 bits (176), Expect = 1e-10
Identities = 48/118 (40%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Frame = -3
Query: 676 GPPSDYYGXXXXXXXXXXXXXXXXSMDRRGFRSSRDW-----SDDSGLEXXXXXXXXXXX 512
GPPSD YG DRRG ++SR W SDD+G
Sbjct: 644 GPPSDNYGRFSGRERSSRNSSR----DRRGLKTSRGWGSSRDSDDNG----DIFSRNRSF 695
Query: 511 XXXXXXXXXXXXXXSDWLIGDRRSSRSPSFGGKDSRSFGGACFNCGRPGHRASECPSK 338
DWLIG RRSSRS S FGG+CFNCGR GHRASECP K
Sbjct: 696 RTNNSKGRNFRSSGDDWLIGGRRSSRSSSVD-----RFGGSCFNCGRMGHRASECPDK 748
>ref|XP_006480315.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like isoform X1 [Citrus sinensis]
Length = 768
Score = 72.0 bits (175), Expect = 2e-10
Identities = 40/83 (48%), Positives = 41/83 (49%)
Frame = -3
Query: 589 GFRSSRDWSDDSGLEXXXXXXXXXXXXXXXXXXXXXXXXXSDWLIGDRRSSRSPSFGGKD 410
GFRSSR W D DWLIG RSSRS S
Sbjct: 688 GFRSSRSWGSDDEDGFSSSRGGRSFRSGNNQGSRFSTSSDDDWLIGGSRSSRSSS--RDS 745
Query: 409 SRSFGGACFNCGRPGHRASECPS 341
SRSFGGACFNCGR GHRASECP+
Sbjct: 746 SRSFGGACFNCGRSGHRASECPN 768
>ref|XP_006423936.1| hypothetical protein CICLE_v10027858mg [Citrus clementina]
gi|557525870|gb|ESR37176.1| hypothetical protein
CICLE_v10027858mg [Citrus clementina]
Length = 780
Score = 72.0 bits (175), Expect = 2e-10
Identities = 40/83 (48%), Positives = 41/83 (49%)
Frame = -3
Query: 589 GFRSSRDWSDDSGLEXXXXXXXXXXXXXXXXXXXXXXXXXSDWLIGDRRSSRSPSFGGKD 410
GFRSSR W D DWLIG RSSRS S
Sbjct: 700 GFRSSRSWGSDDEDGFSSSRGGRSFRSGNNQGSRFSTSSDDDWLIGGSRSSRSSS--RDS 757
Query: 409 SRSFGGACFNCGRPGHRASECPS 341
SRSFGGACFNCGR GHRASECP+
Sbjct: 758 SRSFGGACFNCGRSGHRASECPN 780
>ref|XP_003626109.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|87240993|gb|ABD32851.1| Helicase, C-terminal; Zinc
finger, CCHC-type; GUCT [Medicago truncatula]
gi|355501124|gb|AES82327.1| DEAD-box ATP-dependent RNA
helicase [Medicago truncatula]
Length = 753
Score = 71.6 bits (174), Expect = 2e-10
Identities = 45/117 (38%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Frame = -3
Query: 676 GPPSDYYGXXXXXXXXXXXXXXXXSMDRRGFRSSRDWSDDSGLEXXXXXXXXXXXXXXXX 497
GPPSD+YG D RGFRSSR W G +
Sbjct: 639 GPPSDFYGKFSDRERNNRRGGSR---DGRGFRSSRGWDGGRGSDDDFGDSSRRGGRSYKS 695
Query: 496 XXXXXXXXXS---DWLIGDRRSSRSPSFGGKDSRSFGGACFNCGRPGHRASECPSKK 335
S DWLIG R+SSRS S +RSF G CF CG GHRAS+CP+K+
Sbjct: 696 GNSWSKPERSSRDDWLIGGRQSSRSSS---SPNRSFAGTCFTCGESGHRASDCPNKR 749
>ref|XP_006382233.1| hypothetical protein POPTR_0005s00200g [Populus trichocarpa]
gi|550337584|gb|ERP60030.1| hypothetical protein
POPTR_0005s00200g [Populus trichocarpa]
Length = 773
Score = 71.2 bits (173), Expect = 3e-10
Identities = 47/117 (40%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Frame = -3
Query: 676 GPPSDYYGXXXXXXXXXXXXXXXXSMDRRGFRSSRD-----WSDDSGLEXXXXXXXXXXX 512
GPPSD+YG R GFRSSR +SDD G
Sbjct: 668 GPPSDFYGRFSSRDRPARGGPRG---QRGGFRSSRGQGSGRYSDDEGTNRRGGRSNSNEN 724
Query: 511 XXXXXXXXXXXXXXSDWLIGDRRSSRSPSFGGKDSRSFGGACFNCGRPGHRASECPS 341
DWL+G RRSSR S RSFGG+CFNCGR GHRASECP+
Sbjct: 725 TRSWMSRSSGD----DWLVGGRRSSRPSS----RDRSFGGSCFNCGRSGHRASECPN 773
>ref|XP_006480317.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like isoform X3 [Citrus sinensis]
Length = 766
Score = 70.1 bits (170), Expect = 6e-10
Identities = 39/83 (46%), Positives = 40/83 (48%)
Frame = -3
Query: 589 GFRSSRDWSDDSGLEXXXXXXXXXXXXXXXXXXXXXXXXXSDWLIGDRRSSRSPSFGGKD 410
GFRSSR W D DWLIG RSSRS S
Sbjct: 688 GFRSSRSWGSDDEDGFSSSRGGRSFRSGNNQGSRFSTSSDDDWLIGGSRSSRSSS----R 743
Query: 409 SRSFGGACFNCGRPGHRASECPS 341
RSFGGACFNCGR GHRASECP+
Sbjct: 744 DRSFGGACFNCGRSGHRASECPN 766