BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00002619
         (1631 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s...   581   e-163
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s...   573   e-160
gb|EPS62830.1| hypothetical protein M569_11956, partial [Genlise...   563   e-157
gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Mor...   534   e-149
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s...   529   e-147
ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr...   529   e-147
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...   528   e-147
gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao]          527   e-147
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s...   519   e-144
ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [A...   496   e-138
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu...   489   e-135
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo...   479   e-132
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g...   479   e-132
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s...   476   e-131
ref|XP_004294640.1| PREDICTED: DNA-directed RNA polymerase III s...   474   e-131
ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III s...   471   e-130
emb|CBI16226.3| unnamed protein product [Vitis vinifera]              470   e-130
ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi...   469   e-129
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [...   469   e-129
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S...   467   e-129

>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Solanum tuberosum]
          Length = 1394

 Score =  581 bits (1497), Expect = e-163
 Identities = 322/512 (62%), Positives = 375/512 (73%), Gaps = 7/512 (1%)
 Frame = +3

Query: 3    MDPAQMEEKSGLPLNFERLLMKTKATCPAIEQKSXXXXXXXXXXXXXXXXRLSKSTTTRE 182
            MDP+QMEEK G PLNF RL MK KATCP   +KS                RLS    T E
Sbjct: 899  MDPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKS----LSYSEICEIVNERLSYHDMTPE 954

Query: 183  EGFAHNFASSSDTPSNKEGCLEAFQNSLRNFIMKKYPSSILMLKSN----ERQHSEEDRS 350
                              GC EAF++SL +F++K    ++  L+ +    E Q+  +DR 
Sbjct: 955  -----------------GGCSEAFRSSLSDFLIKNLAETLKNLRESLLLGEEQYEGDDRG 997

Query: 351  CLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMTLKTFH 530
             LE +A NISGIT++QL VFL TCISRYH K+                EPGTQMTLKTFH
Sbjct: 998  YLEKIALNISGITKRQLQVFLNTCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFH 1057

Query: 531  FAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQVA 710
            FAGVASMNVTLGVPRIKEIINAAK+I TPIITT L    N   A+++K RIEKTLL QVA
Sbjct: 1058 FAGVASMNVTLGVPRIKEIINAAKKITTPIITTKLLSAANLTAARMIKARIEKTLLGQVA 1117

Query: 711  KSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPRKL 890
            KS+K   ASRLASI I+LDM+ IQ +QL +DAYTVK+SILQT K+KLKE Q++VLNPRKL
Sbjct: 1118 KSVKIVLASRLASIAISLDMETIQVSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNPRKL 1177

Query: 891  EVILQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGN---KRLKLLV 1061
            EV  QA+++KL FELH LKNK+  VVVKGI +V+RA ++N+ ++KD   +   +  +LLV
Sbjct: 1178 EVFPQANKDKLHFELHRLKNKLPAVVVKGITTVQRA-VVNKEQQKDRKNDVKGETYELLV 1236

Query: 1062 EGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRHM 1241
            EGTGLL+VMGI+GVDG  T SNHI+EVQ TLGIEAAR  IIDEI YTMSSHGMTID+RHM
Sbjct: 1237 EGTGLLAVMGIEGVDGRYTKSNHIMEVQNTLGIEAARVSIIDEINYTMSSHGMTIDLRHM 1296

Query: 1242 MLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSECI 1421
            MLLADLMT+KGEVLGITRHGVQKMKDSVLMLASFEKT DHLFNASVNGR D+IEGV+ECI
Sbjct: 1297 MLLADLMTYKGEVLGITRHGVQKMKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVTECI 1356

Query: 1422 IMGIPMQIGTGMLKVRQSVQPVELNYGPDPII 1517
            IMGIPM IGTGM K+RQ V+ VELNY PDPII
Sbjct: 1357 IMGIPMTIGTGMFKLRQRVEQVELNYQPDPII 1388


>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
            lycopersicum]
          Length = 1390

 Score =  573 bits (1476), Expect = e-160
 Identities = 317/512 (61%), Positives = 372/512 (72%), Gaps = 7/512 (1%)
 Frame = +3

Query: 3    MDPAQMEEKSGLPLNFERLLMKTKATCPAIEQKSXXXXXXXXXXXXXXXXRLSKSTTTRE 182
            MDP++MEEK G PLNF RL MK KATCP   +KS                RLS    T E
Sbjct: 899  MDPSRMEEKKGRPLNFSRLFMKVKATCPPGGEKS----LSYSEICEIVNERLSYHDMTPE 954

Query: 183  EGFAHNFASSSDTPSNKEGCLEAFQNSLRNFIMKKYPSSILMLKSN----ERQHSEEDRS 350
                              GC EAF+ SL +F++K    ++  L+ +    E Q+  +DR 
Sbjct: 955  -----------------GGCSEAFRASLSDFLIKSLAETLKNLRESLLLGEEQYEGDDRG 997

Query: 351  CLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMTLKTFH 530
             LE +  NISGIT++QL VFL TCISRYH K+                EPGTQMTLKTFH
Sbjct: 998  YLEKIVLNISGITKKQLQVFLNTCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFH 1057

Query: 531  FAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQVA 710
            FAGVASMNVTLGVPRIKEIINAAK+I TPIIT  L    N   A+++K RIEKTLL QVA
Sbjct: 1058 FAGVASMNVTLGVPRIKEIINAAKKITTPIITAKLLSAGNLTAARMIKARIEKTLLGQVA 1117

Query: 711  KSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPRKL 890
            KS+K   ASRLASI I+LDM+ IQ +QL +DAYTVK+SILQT K+KLKE Q++VLNPRKL
Sbjct: 1118 KSVKIVLASRLASIAISLDMETIQVSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNPRKL 1177

Query: 891  EVILQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGN---KRLKLLV 1061
            EV  QA+++KL FELH LKNK+  VVVKGI +V+RA ++N+ ++KD   +   +  +LLV
Sbjct: 1178 EVFPQANKDKLHFELHRLKNKLPAVVVKGITTVQRA-VVNKEQQKDRKNDVKGETYELLV 1236

Query: 1062 EGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRHM 1241
            EGTGLL+VMGI+GVDG  T SNHI+EVQ TLGIEAAR  IIDEI YTMSSHGMTID+RHM
Sbjct: 1237 EGTGLLAVMGIEGVDGRYTKSNHIMEVQHTLGIEAARVSIIDEINYTMSSHGMTIDLRHM 1296

Query: 1242 MLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSECI 1421
            MLLADLMT+KGEVLGITRHGVQKMKDSVLMLASFEKT DHLFNASVNGR D+IEGV+ECI
Sbjct: 1297 MLLADLMTYKGEVLGITRHGVQKMKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVTECI 1356

Query: 1422 IMGIPMQIGTGMLKVRQSVQPVELNYGPDPII 1517
            IMGIPM IGTGM K+RQ V+ VELNY PDP++
Sbjct: 1357 IMGIPMTIGTGMFKLRQRVEHVELNYQPDPMM 1388


>gb|EPS62830.1| hypothetical protein M569_11956, partial [Genlisea aurea]
          Length = 1368

 Score =  563 bits (1450), Expect = e-157
 Identities = 304/491 (61%), Positives = 363/491 (73%), Gaps = 1/491 (0%)
 Frame = +3

Query: 3    MDPAQMEEKSGLPLNFERLLMKTKATCPAIEQKSXXXXXXXXXXXXXXXXRLSKSTTTRE 182
            +DPAQMEEK+G PLNFERL MK KATCP+  Q S                  S+S     
Sbjct: 895  LDPAQMEEKTGFPLNFERLFMKAKATCPSEGQPSLKAEDIDFIINRVIEENHSRSDI--- 951

Query: 183  EGFAHNFASSSDTPSNKEGCLEAFQNSLRNFIMKK-YPSSILMLKSNERQHSEEDRSCLE 359
                          S  E C E F+ SL  F+ K+ YP+ +L  K N    S +D+S ++
Sbjct: 952  --------------SEMEKCSETFEASLLRFLNKRVYPTGMLSEKLNSENISLQDKSYVQ 997

Query: 360  NVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAG 539
            +V S+ SGIT+QQL VFL  C +RYH KK                EPGTQMTLKTFHFAG
Sbjct: 998  SVVSSTSGITQQQLEVFLNMCFARYHPKKIECGTAVGAIGAQSIGEPGTQMTLKTFHFAG 1057

Query: 540  VASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQVAKSI 719
            VASMNVTLGVPRI+EII+AAK+I TP+ITT LQ  +  I A++VKGRIEKTLL ++AKS+
Sbjct: 1058 VASMNVTLGVPRIREIIDAAKKIKTPVITTELQRKDCGITARIVKGRIEKTLLGEIAKSM 1117

Query: 720  KTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPRKLEVI 899
            K S+ +R ASIVI LD K I+ AQL +DAYTVKESIL TPKMKLKEQQ+RVLN +KL V 
Sbjct: 1118 KVSEMTRTASIVIKLDTKVIEAAQLFIDAYTVKESILLTPKMKLKEQQIRVLNRQKLTVS 1177

Query: 900  LQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGNKRLKLLVEGTGLL 1079
            L+A+R+KL+FE   L+NK+  VVVKGI  VERAII++EA  KDP+  K+LKL+VEGTG L
Sbjct: 1178 LEAERSKLEFESWALQNKLKDVVVKGIKQVERAIIVDEANGKDPNQRKKLKLVVEGTGFL 1237

Query: 1080 SVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRHMMLLADL 1259
            SV+GI GVD   T SNHI+EV Q LGIE+AR++IIDEIQYTMS HGMTIDIRHMMLLADL
Sbjct: 1238 SVLGIQGVDARNTKSNHIMEVFQVLGIESARRQIIDEIQYTMSGHGMTIDIRHMMLLADL 1297

Query: 1260 MTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSECIIMGIPM 1439
            MTFKGEVLGITR+GV+KM+DSVLMLASFE+TADHLFNA VNGRVDRIEGVSECI++GIPM
Sbjct: 1298 MTFKGEVLGITRYGVRKMRDSVLMLASFERTADHLFNAPVNGRVDRIEGVSECIMLGIPM 1357

Query: 1440 QIGTGMLKVRQ 1472
            + GTGM+K++Q
Sbjct: 1358 RTGTGMMKIKQ 1368


>gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis]
          Length = 1179

 Score =  534 bits (1376), Expect = e-149
 Identities = 299/510 (58%), Positives = 361/510 (70%), Gaps = 5/510 (0%)
 Frame = +3

Query: 3    MDPAQMEEKSGLPLNFERLLMKTKATCPAIEQKSXXXXXXXXXXXXXXXXRLSKSTTTRE 182
            MDPA ME K+G PLNFERL +K KATCPA                     RLSK   T E
Sbjct: 690  MDPAHMEGKNGAPLNFERLFLKAKATCPA----GGTEKLSPEKVSELVESRLSKKDMTPE 745

Query: 183  EGFAHNFASSSDTPSNKEGCLEAFQNSLRNFI---MKKYPSSILMLKSNERQHSEEDRSC 353
             G                 C  AF+NSL++F+   +K +  +    +S E     E+ + 
Sbjct: 746  GG-----------------CSAAFKNSLKSFLDNYVKAFKRTWDPCESTEGHAKMENSAT 788

Query: 354  LENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHF 533
             +N+   +SG T +QL VFL+TCISRYHSKK                EPGTQMTLKTFHF
Sbjct: 789  TKNIVLQLSGATARQLEVFLDTCISRYHSKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHF 848

Query: 534  AGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQVAK 713
            AGVASMNVTLGVPRIKEIIN AK+I+TPIIT  L+CDNN   A++V+GRIEK  L QVAK
Sbjct: 849  AGVASMNVTLGVPRIKEIINGAKKISTPIITAILECDNNVNFARIVRGRIEKISLGQVAK 908

Query: 714  SIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPRKLE 893
            SIKT   SR+AS+VITLDM+RIQ A LS+DA  V++SILQTP++KLK++ +RVL+ +KLE
Sbjct: 909  SIKTVMTSRVASVVITLDMERIQDALLSIDANVVRDSILQTPRIKLKKEHIRVLDFKKLE 968

Query: 894  VI-LQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGNKRLKLLVEGT 1070
            ++  +++R+KL   L  L   +  ++VKGI +VERA+I +E K+K    +K+ KLLVEGT
Sbjct: 969  ILPYESNRSKLYHHLQFLAKMLQNILVKGIKTVERAVISSE-KDKKTDISKKYKLLVEGT 1027

Query: 1071 GLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRHMMLL 1250
            GLL VMG +GVDG  T +NHIIEVQQTLGIEAAR  IIDEI+YTM SHGM+ID RHMMLL
Sbjct: 1028 GLLGVMGTEGVDGRNTKTNHIIEVQQTLGIEAARTCIIDEIEYTMKSHGMSIDTRHMMLL 1087

Query: 1251 ADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSECIIMG 1430
            AD+MT +GEVLGITR G+QKM  SVLMLASFEKTADHLFNASVNGR D+IEGVSECIIMG
Sbjct: 1088 ADVMTSRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGREDKIEGVSECIIMG 1147

Query: 1431 IPMQIGTGMLKVRQSVQ-PVELNYGPDPII 1517
            IPMQIGTGM+KVRQ V  P  L+YGP PI+
Sbjct: 1148 IPMQIGTGMIKVRQRVDVPPMLSYGPKPIL 1177


>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            rpc1-like isoform X2 [Citrus sinensis]
          Length = 1404

 Score =  529 bits (1362), Expect = e-147
 Identities = 298/511 (58%), Positives = 350/511 (68%), Gaps = 6/511 (1%)
 Frame = +3

Query: 3    MDPAQMEEKSGLPLNFERLLMKTKATCPAIEQKSXXXXXXXXXXXXXXXXRLSKSTTTRE 182
            MDPA ME KSG PLNF+RLLMK KATCP   Q+                  LS    +  
Sbjct: 917  MDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRY-----------------LSPQQVSE- 958

Query: 183  EGFAHNFASSSDTPSNKEGCLEAFQNSLRNFIMKKYPSSILMLKSNERQHSEEDRSCLEN 362
                            KE C EAF NSLR F   +       +K  E    ++    LE 
Sbjct: 959  ------IVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEE 1012

Query: 363  VASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGV 542
            V    SGIT +QL VF++TC SRYH K+                EPGTQMTLKTFHFAGV
Sbjct: 1013 VTHKTSGITEKQLEVFIQTCFSRYHVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGV 1072

Query: 543  ASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQVAKSIK 722
            ASMN+T GVPRIKEIIN AKRI+TPIIT  L+C++NE  A++VKGRIEKTLL QVAKSIK
Sbjct: 1073 ASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIK 1132

Query: 723  TSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPRKLEVIL 902
                SRLASIVI LDM+ IQ A L ++A  VKESI+QTPK+KLK+Q ++VL+ RKLE+  
Sbjct: 1133 IVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFP 1192

Query: 903  QADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEK----DPSGNKRLKLLVEGT 1070
              D++K+ FEL++LKN +  V+VKGI +VER +I  + KEK    +    K+ +LLVEGT
Sbjct: 1193 PVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGT 1252

Query: 1071 GLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRHMMLL 1250
            GL +VMG +G+DGCKT SNHI EVQQTLGIEAAR  IIDEI  TM +HGM+ID RHMMLL
Sbjct: 1253 GLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLL 1312

Query: 1251 ADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSECIIMG 1430
            ADLMTF+GEVLGITR G+QKM  SVLMLASFEKTADHLFNASVNGR DRIEGVSECIIMG
Sbjct: 1313 ADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMG 1372

Query: 1431 IPMQIGTGMLKVRQ-SVQPVELNYG-PDPII 1517
            IPM +GTG+LK+RQ    P  L YG PDPI+
Sbjct: 1373 IPMPLGTGILKIRQRDAVPPMLKYGAPDPIM 1403


>ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina]
            gi|557526635|gb|ESR37941.1| hypothetical protein
            CICLE_v10027681mg [Citrus clementina]
          Length = 1397

 Score =  529 bits (1362), Expect = e-147
 Identities = 298/511 (58%), Positives = 350/511 (68%), Gaps = 6/511 (1%)
 Frame = +3

Query: 3    MDPAQMEEKSGLPLNFERLLMKTKATCPAIEQKSXXXXXXXXXXXXXXXXRLSKSTTTRE 182
            MDPA ME KSG PLNF+RLLMK KATCP   Q+                  LS    +  
Sbjct: 910  MDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRY-----------------LSPQQVSE- 951

Query: 183  EGFAHNFASSSDTPSNKEGCLEAFQNSLRNFIMKKYPSSILMLKSNERQHSEEDRSCLEN 362
                            KE C EAF NSLR F   +       +K  E    ++    LE 
Sbjct: 952  ------IVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKIKFVEDIGWDDKSQILEE 1005

Query: 363  VASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGV 542
            V    SGIT +QL VF++TC SRYH K+                EPGTQMTLKTFHFAGV
Sbjct: 1006 VTHKTSGITEKQLEVFIQTCFSRYHVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGV 1065

Query: 543  ASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQVAKSIK 722
            ASMN+T GVPRIKEIIN AKRI+TPIIT  L+C++NE  A++VKGRIEKTLL QVAKSIK
Sbjct: 1066 ASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIK 1125

Query: 723  TSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPRKLEVIL 902
                SRLASIVI LDM+ IQ A L ++A  VKESI+QTPK+KLK+Q ++VL+ RKLE+  
Sbjct: 1126 IVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFP 1185

Query: 903  QADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEK----DPSGNKRLKLLVEGT 1070
              D++K+ FEL++LKN +  V+VKGI +VER +I  + KEK    +    K+ +LLVEGT
Sbjct: 1186 PVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGT 1245

Query: 1071 GLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRHMMLL 1250
            GL +VMG +G+DGCKT SNHI EVQQTLGIEAAR  IIDEI  TM +HGM+ID RHMMLL
Sbjct: 1246 GLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLL 1305

Query: 1251 ADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSECIIMG 1430
            ADLMTF+GEVLGITR G+QKM  SVLMLASFEKTADHLFNASVNGR DRIEGVSECIIMG
Sbjct: 1306 ADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMG 1365

Query: 1431 IPMQIGTGMLKVRQ-SVQPVELNYG-PDPII 1517
            IPM +GTG+LK+RQ    P  L YG PDPI+
Sbjct: 1366 IPMPLGTGILKIRQRDAVPPMLKYGAPDPIM 1396


>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
            vinifera]
          Length = 1383

 Score =  528 bits (1359), Expect = e-147
 Identities = 300/509 (58%), Positives = 361/509 (70%), Gaps = 4/509 (0%)
 Frame = +3

Query: 3    MDPAQMEEKSGLPLNFERLLMKTKATCPAIEQKSXXXXXXXXXXXXXXXXRLSKSTTTRE 182
            MDPA+ME K G PLNF RL +K KATCPA E  S                ++ ++    +
Sbjct: 904  MDPARMEGKDGFPLNFNRLFLKVKATCPAGENAS------------LSALQIEETVKRLK 951

Query: 183  EGFAHNFASSSDTPSNKEGCLEAFQNSLRNFI---MKKYPSSILMLKSNERQHSEEDRSC 353
            E   HN        ++ EGC +AF+ +L  F+    +K+ ++   L  +     EE+   
Sbjct: 952  E---HN--------TSAEGCSDAFKTNLSGFLEECKEKFKNTREALGLHGEHVGEENLDI 1000

Query: 354  LENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHF 533
             E  A NISGIT +QL VFL+TCISRY  K+                EPGTQMTLKTFHF
Sbjct: 1001 QEKFAKNISGITSKQLQVFLDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHF 1060

Query: 534  AGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQVAK 713
            AGVASMNVTLGVPRIKEIIN AKRI+TPIIT  L+C+NN   A++VKGRIE+T L QVAK
Sbjct: 1061 AGVASMNVTLGVPRIKEIINGAKRISTPIITAALECNNNVKTARMVKGRIERTTLGQVAK 1120

Query: 714  SIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPRKLE 893
            SIK    SRLA I + LDM+ IQ +QLS+D+  V+ESIL+  ++KLK+Q ++VL+  KLE
Sbjct: 1121 SIKIVLTSRLALIAVALDMEGIQASQLSIDSNIVRESILRNRRIKLKQQHIKVLDAGKLE 1180

Query: 894  VILQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGNKRLKLLVEGTG 1073
            V  Q DR+ + FELH LKN +  VVVKGI +VERA+I  + K K         LLVEGTG
Sbjct: 1181 VHPQGDRSTIHFELHALKNLLPTVVVKGIETVERAVINKDNKVK-------YNLLVEGTG 1233

Query: 1074 LLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRHMMLLA 1253
            L +VMG +GV G +TTSNHIIEVQQTLGIEAARK II+EIQYTM+SHGM+IDIRHMMLLA
Sbjct: 1234 LQTVMGTEGVIGRETTSNHIIEVQQTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLA 1293

Query: 1254 DLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSECIIMGI 1433
            DLMTF+GEVLGITR G+QKM  SVLMLASFEKTADHLFNASV+GR D+IEGVSECIIMGI
Sbjct: 1294 DLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGI 1353

Query: 1434 PMQIGTGMLKVRQSVQPV-ELNYGPDPII 1517
            PMQ+GTG+LKVRQ +Q V EL+YG DPII
Sbjct: 1354 PMQLGTGILKVRQRLQQVPELSYGLDPII 1382


>gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao]
          Length = 1395

 Score =  527 bits (1357), Expect = e-147
 Identities = 300/512 (58%), Positives = 360/512 (70%), Gaps = 7/512 (1%)
 Frame = +3

Query: 3    MDPAQMEEKSGLPLNFERLLMKTKATCPAIEQKSXXXXXXXXXXXXXXXXRLSKSTTTRE 182
            MDPA ME KSG PLNF+RLLMK KATCP IEQK                   S      E
Sbjct: 910  MDPACMEGKSGFPLNFDRLLMKVKATCPPIEQKCLHVG--------------SIMQMLEE 955

Query: 183  EGFAHNFASSSDTPSNKEGCLEAFQNSLRNFIMKKYPS--SILMLKSNERQHSEEDRSCL 356
            +   H+ A           C EAF+ SL+ F+  +      ++ L +N  Q SE     L
Sbjct: 956  QLAKHDPAGV---------CSEAFKKSLKGFLKSQTNELDRVMKLVNNCAQKSE----IL 1002

Query: 357  ENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFA 536
            E V   ISGI+ +QL VF+ TCISRY SK                 EPGTQMTLKTFHFA
Sbjct: 1003 EKVGHKISGISDRQLEVFVSTCISRYRSKVIEAGTAIGAIGAQSIGEPGTQMTLKTFHFA 1062

Query: 537  GVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQVAKS 716
            GVASMN+T GVPRIKEIINAAKRI+TP+IT  L+ D+N  IA++VKGRIEKT+L QVAKS
Sbjct: 1063 GVASMNITQGVPRIKEIINAAKRISTPVITAELEFDDNPNIAQIVKGRIEKTVLGQVAKS 1122

Query: 717  IKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPRKLEV 896
            IK    SR AS+VITLDM+ I  A+L +DA  VKESILQTPK+KLKEQ V+VL+ RKLEV
Sbjct: 1123 IKIVITSRSASVVITLDMEIILDAELYIDANIVKESILQTPKIKLKEQHVKVLDGRKLEV 1182

Query: 897  ILQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKE----KDPSGNKRLKLLVE 1064
            +  ADR+++ FELH+LKN +  VVVKGI +VER ++ ++ KE    K+    K  +LLVE
Sbjct: 1183 VPPADRSQIHFELHSLKNLLPLVVVKGIKTVERTVVYDKNKEKKNQKEEETTKHFQLLVE 1242

Query: 1065 GTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRHMM 1244
            GTGL +VMGI+G+DG +T SNH++E++Q LGIEAARK IIDEI  TM  HGMTID RHMM
Sbjct: 1243 GTGLQAVMGIEGIDGRRTWSNHVMEMEQILGIEAARKCIIDEIAQTMEHHGMTIDRRHMM 1302

Query: 1245 LLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSECII 1424
            LLAD+MTF+GEVLGITR G+QKM  S+LMLASFE+TADHLFNA+VNGR D+IEGV+ECII
Sbjct: 1303 LLADVMTFRGEVLGITRFGIQKMDKSILMLASFERTADHLFNAAVNGRDDKIEGVTECII 1362

Query: 1425 MGIPMQIGTGMLKVRQSVQPVE-LNYGPDPII 1517
            MGIPMQIGTG+LKV Q V P   L YGPDP++
Sbjct: 1363 MGIPMQIGTGILKVIQRVDPPPMLRYGPDPVL 1394


>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
            sativus]
          Length = 1400

 Score =  519 bits (1336), Expect = e-144
 Identities = 303/520 (58%), Positives = 358/520 (68%), Gaps = 15/520 (2%)
 Frame = +3

Query: 3    MDPAQMEEKSGLPLNFERLLMKTKATCPAIEQKSXXXXXXXXXXXXXXXXRLSKSTTTRE 182
            MDPAQME KSG PLNFERL +K KATCP+   K                   S+ + T E
Sbjct: 904  MDPAQMEGKSGAPLNFERLFLKAKATCPSDGNKILSP---------------SEFSETVE 948

Query: 183  EGFAHNFASSSDTPSNKEGCLEAFQNSLRNFIMK----KYPSSILMLKSNER-------Q 329
            +        S D  S + GC  AF  SL+ F+ K    +  S   +L  NE         
Sbjct: 949  DRL------SKDDASPECGCSPAFVGSLKIFLNKYVEAQKKSWGTLLADNESAVDKSIIS 1002

Query: 330  HSEEDRSCLEN-VASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGT 506
             S+ D   + N V  NI+G+T +QL VFL+TC+SRYH+KK                EPGT
Sbjct: 1003 SSDNDNIVIRNKVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGT 1062

Query: 507  QMTLKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIE 686
            QMTLKTFHFAGVASMNVTLGVPRIKEIIN AKRI+TPI+T  L  D+N  IA++VK RIE
Sbjct: 1063 QMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIVTAALTHDDNVNIARMVKARIE 1122

Query: 687  KTLLEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQV 866
            KT L Q+AK I+   +SR A I I LDM++I+ A+L VDA  VK++IL TPK+KLK + +
Sbjct: 1123 KTNLGQIAKCIQIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHI 1182

Query: 867  RVLNPRKLEVILQ-ADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGN- 1040
             VL+ RKL V+ Q ADRNKL F LH LKN +  VVVKGI +V RA+I    +EKD + N 
Sbjct: 1183 NVLDDRKLRVLPQDADRNKLHFNLHFLKNMLPGVVVKGIKTVGRAVI---KEEKDKARNA 1239

Query: 1041 KRLKLLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGM 1220
            K+  LLVEGTGL +VMG +GVDGC T SNHIIEVQQ LGIEAARK II+EI+YTM SHGM
Sbjct: 1240 KKFSLLVEGTGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGM 1299

Query: 1221 TIDIRHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRI 1400
            +IDIRHMMLL DLMTF+GEVLGITR G+QKM  SVLMLASFEKTADHLFNASVNGR D+I
Sbjct: 1300 SIDIRHMMLLGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKI 1359

Query: 1401 EGVSECIIMGIPMQIGTGMLKVRQSVQ-PVELNYGPDPII 1517
            EGVSEC+IMGIPM +GTGMLKVRQ V  P +L YGP  I+
Sbjct: 1360 EGVSECVIMGIPMPLGTGMLKVRQRVSVPQQLPYGPPAIL 1399


>ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [Amborella trichopoda]
            gi|548832896|gb|ERM95665.1| hypothetical protein
            AMTR_s00023p00196820 [Amborella trichopoda]
          Length = 1383

 Score =  496 bits (1278), Expect = e-138
 Identities = 287/515 (55%), Positives = 354/515 (68%), Gaps = 9/515 (1%)
 Frame = +3

Query: 3    MDPAQMEEKSGLPLNFERLLMKTKATCPAIEQKSXXXXXXXXXXXXXXXXRLSKSTTTRE 182
            MDPA+ME KSG+PLN +RL MK KATCPA                      +S S +  E
Sbjct: 898  MDPAKMEGKSGVPLNLDRLFMKIKATCPA---------------------SVSASLSPSE 936

Query: 183  EGFAHNFASSSDTPSNKEGCLEAFQNSLRNFIMKKYPS---SILMLKSNERQHSEEDRSC 353
                 N   S    + + GC  AF+  L NFI K+  +   +  ML  +E    +E  S 
Sbjct: 937  ISTIVNDRLSKHDMTPERGCSMAFKEELSNFIKKRMDAIKKTRNMLGLDEDCVDKEKFSG 996

Query: 354  LENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHF 533
            LE+VA+NISGI+RQQL VFLETCISRYH K+                EPGTQMTLKTFHF
Sbjct: 997  LEHVAANISGISRQQLRVFLETCISRYHLKRIEAGTAIGAIGAQSIGEPGTQMTLKTFHF 1056

Query: 534  AGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQVAK 713
            AGVASMN+TLGVPRIKEI+ A+K+I+TPIIT TL CDN+E  A++VKGRIEKTLL +VAK
Sbjct: 1057 AGVASMNITLGVPRIKEILGASKKISTPIITATLVCDNDEKSARIVKGRIEKTLLGEVAK 1116

Query: 714  SIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLN----P 881
            ++K S     ASI ITLDMKRI+  Q+++DA TV +SI +  K K+   +++V      P
Sbjct: 1117 TVKISVTPTQASINITLDMKRIEALQMAIDAKTVADSISENLKAKVSRTKLKVKPTFTLP 1176

Query: 882  RKLEVIL-QADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGNKRLKLL 1058
             KL+++L +  R ++ + LH L++ + K++VKGI +VERA+I N  K K       L LL
Sbjct: 1177 DKLKILLPEIGRKEVLYSLHLLQSLLPKIIVKGIPTVERAVI-NNVKGK-------LNLL 1228

Query: 1059 VEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRH 1238
            VEGT LL+VMG  GVDG  TTSNHI+EV+ TLGIEAARK IIDEIQYTM SHGM+ID+RH
Sbjct: 1229 VEGTNLLAVMGTPGVDGRNTTSNHIVEVEGTLGIEAARKSIIDEIQYTMKSHGMSIDLRH 1288

Query: 1239 MMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSEC 1418
            MMLLADLMTF+G VLGI R G+ KMK+SVLMLASFE+TAD LF+A+  GRVD I GVSEC
Sbjct: 1289 MMLLADLMTFRGLVLGIQRFGITKMKESVLMLASFERTADILFDATTRGRVDTIAGVSEC 1348

Query: 1419 IIMGIPMQIGTGMLKVRQ-SVQPVELNYGPDPIIC 1520
            IIMG+PMQIGTG+L V+Q   Q  +L YGPDPIIC
Sbjct: 1349 IIMGVPMQIGTGILSVQQRPEQLAKLTYGPDPIIC 1383


>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
            communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
            polymerase III largest subunit, putative [Ricinus
            communis]
          Length = 1383

 Score =  489 bits (1258), Expect = e-135
 Identities = 282/521 (54%), Positives = 345/521 (66%), Gaps = 16/521 (3%)
 Frame = +3

Query: 3    MDPAQMEEKSGLPLNFERLLMKTKATCPAIEQKSXXXXXXXXXXXXXXXXRLSKSTTTRE 182
            +DPA ME K G+PLN +RL  K KATCP  E+                   L  S     
Sbjct: 885  LDPASMEGKGGVPLNLDRLFSKVKATCPVREEDYLSP--------------LDISDVVEN 930

Query: 183  EGFAHNFASSSDTPSNKEGCLEAFQNSLRNFI---MKKYPSSILMLKSNERQHSEE---- 341
                H+ A           C EAF+ SL +F+    K+  S + +    E   SE     
Sbjct: 931  LLLKHDMALGGI-------CSEAFKKSLTSFLGSHAKRLESMMKLADGVEDPTSENIQTG 983

Query: 342  ----DRSCLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQ 509
                +   +E +A  I G++ +Q+ VF++TCI+RY  K+                EPGTQ
Sbjct: 984  GIRGNSKIIERLAHKIFGVSERQIEVFVKTCINRYLWKRVEPGTAIGAIGAQSIGEPGTQ 1043

Query: 510  MTLKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEK 689
            MTLKTFHFAGVASMN+T GVPRIKEIIN AK+I+TPIIT  L+ + N   A++ KGRI+K
Sbjct: 1044 MTLKTFHFAGVASMNITQGVPRIKEIINGAKKISTPIITAELEQNTNVTAARIAKGRIQK 1103

Query: 690  TLLEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVR 869
            T+L QVAKSIK    SR AS+VITLDMK IQ AQLS+DA  VKE+IL+TP++KLK Q ++
Sbjct: 1104 TVLGQVAKSIKIVMTSRSASVVITLDMKTIQNAQLSLDANIVKEAILRTPRIKLKPQHIK 1163

Query: 870  VLNPRKLEVILQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGNKR- 1046
            VL+ RKLEVI   DR ++ FELH LKN +  ++V+GI +VERA+I    K+ D   N + 
Sbjct: 1164 VLDTRKLEVIPLGDRERVHFELHNLKNLLPSIIVQGIKTVERAVIAQ--KKHDGKANDQE 1221

Query: 1047 ---LKLLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHG 1217
                 +LVEG GL  VMG +GVDGCKTTSNH++EVQ+ LGIEAARK IIDEI  TM  HG
Sbjct: 1222 LPTYNMLVEGMGLDLVMGTEGVDGCKTTSNHVMEVQKFLGIEAARKCIIDEINQTMEHHG 1281

Query: 1218 MTIDIRHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDR 1397
            M+IDIRHMMLL DLMTFKGEVLGITR G+QKM  SVLMLASFEKTADHL++A+V GR D+
Sbjct: 1282 MSIDIRHMMLLGDLMTFKGEVLGITRFGIQKMDKSVLMLASFEKTADHLYHAAVFGRDDK 1341

Query: 1398 IEGVSECIIMGIPMQIGTGMLKVRQSVQPVE-LNYGPDPII 1517
            IEGVSECIIMGIPMQIGTG+LKV+Q V P   LNYG D II
Sbjct: 1342 IEGVSECIIMGIPMQIGTGILKVQQRVDPPPVLNYGSDSII 1382


>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
          Length = 1321

 Score =  479 bits (1234), Expect = e-132
 Identities = 274/510 (53%), Positives = 344/510 (67%), Gaps = 5/510 (0%)
 Frame = +3

Query: 3    MDPAQMEEKSGLPLNFERLLMKTKATCPAIEQKSXXXXXXXXXXXXXXXXRLSKSTTTRE 182
            MDPA+ME K G PLN ++L MK  ATCP   Q +                 LS     + 
Sbjct: 836  MDPAKMEGKDGKPLNLDQLFMKVMATCPQRGQNT-----------------LSPGEILQ- 877

Query: 183  EGFAHNFASSSDTPSNKEGCLEAFQNSLRNFI---MKKYPSSILMLKSNERQHSEEDRSC 353
                 N   S    S+ +GC E F+  L  F+   +K   S+   L  +E    E   S 
Sbjct: 878  ---ILNDKLSEHDASSDDGCSEKFKQLLTYFLEDRIKLLKSTRRALLLDEDHVGERHSSF 934

Query: 354  LENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHF 533
             E++A+NISGI+ +QL VFL+TC+SRYH KK                EPGTQMTLKTFHF
Sbjct: 935  EESIAANISGISVKQLQVFLDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHF 994

Query: 534  AGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQVAK 713
            AGVASMNVTLGVPRIKEIINAAK+I+TPIIT  L  + + + A++VKG +EK +L +VA+
Sbjct: 995  AGVASMNVTLGVPRIKEIINAAKKISTPIITAELLSEKDVLSARIVKGSMEKAVLGEVAE 1054

Query: 714  SIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPRKLE 893
            +IK    S   ++V+ LDM+RI+   + + A +V+ SIL  PK+KLK + VRV++  KL 
Sbjct: 1055 AIKIVLKSSQPNLVVKLDMQRIEALHMGISADSVQLSILNHPKIKLKSEHVRVIDKSKLR 1114

Query: 894  VI-LQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGNKRLKLLVEGT 1070
            +     D++KL +ELH LK+ + KV+VKGI +VERA+I    +E D    KR KLLVEGT
Sbjct: 1115 IYPAGIDKSKLLYELHHLKSMLPKVIVKGIPTVERAVISETGEEND----KRYKLLVEGT 1170

Query: 1071 GLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRHMMLL 1250
             LL+VMG  GVD  KT SNHI+EV +TLGIEAAR+ IIDEIQYTM SHGM ID RHMMLL
Sbjct: 1171 NLLAVMGTPGVDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLL 1230

Query: 1251 ADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSECIIMG 1430
            ADLMT+KGE+LGITR+G+ KMK SVLMLASFEKTA+HLFNAS +GR D+IEGVSECIIMG
Sbjct: 1231 ADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMG 1290

Query: 1431 IPMQIGTGMLKVRQSVQPV-ELNYGPDPII 1517
            IPMQ+GTG+LKVRQ +  + E  Y PDPI+
Sbjct: 1291 IPMQLGTGILKVRQRLDHLPEFKYQPDPIL 1320


>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
            gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
            Japonica Group] gi|38347455|emb|CAD41360.2|
            OSJNBa0076N16.24 [Oryza sativa Japonica Group]
            gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
            Japonica Group] gi|116310339|emb|CAH67354.1|
            OSIGBa0130B08.14 [Oryza sativa Indica Group]
            gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
            Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|218195112|gb|EEC77539.1| hypothetical protein
            OsI_16437 [Oryza sativa Indica Group]
          Length = 1383

 Score =  479 bits (1234), Expect = e-132
 Identities = 274/510 (53%), Positives = 344/510 (67%), Gaps = 5/510 (0%)
 Frame = +3

Query: 3    MDPAQMEEKSGLPLNFERLLMKTKATCPAIEQKSXXXXXXXXXXXXXXXXRLSKSTTTRE 182
            MDPA+ME K G PLN ++L MK  ATCP   Q +                 LS     + 
Sbjct: 898  MDPAKMEGKDGKPLNLDQLFMKVMATCPQRGQNT-----------------LSPGEILQ- 939

Query: 183  EGFAHNFASSSDTPSNKEGCLEAFQNSLRNFI---MKKYPSSILMLKSNERQHSEEDRSC 353
                 N   S    S+ +GC E F+  L  F+   +K   S+   L  +E    E   S 
Sbjct: 940  ---ILNDKLSEHDASSDDGCSEKFKQLLTYFLEDRIKLLKSTRRALLLDEDHVGERHSSF 996

Query: 354  LENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHF 533
             E++A+NISGI+ +QL VFL+TC+SRYH KK                EPGTQMTLKTFHF
Sbjct: 997  EESIAANISGISVKQLQVFLDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHF 1056

Query: 534  AGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQVAK 713
            AGVASMNVTLGVPRIKEIINAAK+I+TPIIT  L  + + + A++VKG +EK +L +VA+
Sbjct: 1057 AGVASMNVTLGVPRIKEIINAAKKISTPIITAELLSEKDVLSARIVKGSMEKAVLGEVAE 1116

Query: 714  SIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPRKLE 893
            +IK    S   ++V+ LDM+RI+   + + A +V+ SIL  PK+KLK + VRV++  KL 
Sbjct: 1117 AIKIVLKSSQPNLVVKLDMQRIEALHMGISADSVQLSILNHPKIKLKSEHVRVIDKSKLR 1176

Query: 894  VI-LQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGNKRLKLLVEGT 1070
            +     D++KL +ELH LK+ + KV+VKGI +VERA+I    +E D    KR KLLVEGT
Sbjct: 1177 IYPAGIDKSKLLYELHHLKSMLPKVIVKGIPTVERAVISETGEEND----KRYKLLVEGT 1232

Query: 1071 GLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRHMMLL 1250
             LL+VMG  GVD  KT SNHI+EV +TLGIEAAR+ IIDEIQYTM SHGM ID RHMMLL
Sbjct: 1233 NLLAVMGTPGVDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLL 1292

Query: 1251 ADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSECIIMG 1430
            ADLMT+KGE+LGITR+G+ KMK SVLMLASFEKTA+HLFNAS +GR D+IEGVSECIIMG
Sbjct: 1293 ADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMG 1352

Query: 1431 IPMQIGTGMLKVRQSVQPV-ELNYGPDPII 1517
            IPMQ+GTG+LKVRQ +  + E  Y PDPI+
Sbjct: 1353 IPMQLGTGILKVRQRLDHLPEFKYQPDPIL 1382


>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
            brachyantha]
          Length = 1389

 Score =  476 bits (1225), Expect = e-131
 Identities = 274/513 (53%), Positives = 347/513 (67%), Gaps = 8/513 (1%)
 Frame = +3

Query: 3    MDPAQMEEKSGLPLNFERLLMKTKATCPAIEQKSXXXXXXXXXXXXXXXXRLSKSTTTRE 182
            MDPA+ME + G PLN ++L MK  ATCP   Q +                 LS     + 
Sbjct: 909  MDPAKMEGEDGKPLNLDQLFMKVMATCPQRGQNT-----------------LSPGEILQ- 950

Query: 183  EGFAHNFASSSDTPSNKEGCLEAFQNSLRNFIMKKYPSSILMLKSNER------QHSEED 344
                 N   S    S+ +GC E F+  L++F+  +    I +LKS  R       H  +D
Sbjct: 951  ---ILNDKLSEHDASSDDGCSEKFKQLLKDFLEDR----IKLLKSTRRALCLDENHVGKD 1003

Query: 345  RSCLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMTLKT 524
             S  E++A+NISGI+ +QL VFL+TC+SRYHSKK                EPGTQMTLKT
Sbjct: 1004 SSIEESIAANISGISAKQLQVFLDTCLSRYHSKKIEAGASIGAIGAQSIGEPGTQMTLKT 1063

Query: 525  FHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQ 704
            FHFAGVASMNVTLGVPRIKEIINAAK+I+TPIIT  L    + + A++VKG +EK +L +
Sbjct: 1064 FHFAGVASMNVTLGVPRIKEIINAAKKISTPIITAELLSGKDVLSARVVKGSMEKAVLGE 1123

Query: 705  VAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPR 884
            VA+ IK    S   ++V+ LDM+RI+   + + A +V+ SIL  P++KLK + VRV++  
Sbjct: 1124 VAEDIKIVLKSSQPNLVVKLDMQRIEDLHMGISADSVQLSILNHPRIKLKSEHVRVIDKA 1183

Query: 885  KLEVILQA-DRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGNKRLKLLV 1061
            KL V   A D++KL +ELH LK+ + KV+VKGI +VERA+I         +G+K   LLV
Sbjct: 1184 KLRVYPTAIDKSKLLYELHNLKSMLPKVIVKGIPTVERAVI-------SQTGDK-YSLLV 1235

Query: 1062 EGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRHM 1241
            EGT LL+VMG  GVD  KT SNHI+EV +TLGIEAAR+ IIDEIQYTM+SHGM ID RHM
Sbjct: 1236 EGTNLLAVMGTPGVDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMTSHGMNIDSRHM 1295

Query: 1242 MLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSECI 1421
            MLLADLMT+KGE+LGITR+G+ KMK SVLMLASFEKTA+HLFNAS +GR D+IEGVSECI
Sbjct: 1296 MLLADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECI 1355

Query: 1422 IMGIPMQIGTGMLKVRQSVQPV-ELNYGPDPII 1517
            IMGIPMQ+GTG+LKVRQ +  + E  Y PDPI+
Sbjct: 1356 IMGIPMQLGTGILKVRQRLDHLPEFKYQPDPIL 1388


>ref|XP_004294640.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
            [Fragaria vesca subsp. vesca]
          Length = 1390

 Score =  474 bits (1220), Expect = e-131
 Identities = 274/498 (55%), Positives = 333/498 (66%), Gaps = 8/498 (1%)
 Frame = +3

Query: 3    MDPAQMEEKSGLPLNFERLLMKTKATCPAIEQKSXXXXXXXXXXXXXXXXRLSKSTTTRE 182
            MDPA ME KSG PL+F RL  + KATCPA E +S                RLS+   T +
Sbjct: 906  MDPAMMEGKSGAPLDFYRLFFRAKATCPAGESESLSPDEVSEIVRS----RLSEQDMTPD 961

Query: 183  EGFAHNFASSSDTPSNKEGCLEAFQNSLRNFIMKKYPSSILMLKSNERQHSEEDRSCLEN 362
             G +  F SS       E  L+ +  +LR     K   + L+   N+    E   + L+N
Sbjct: 962  GGCSMGFKSSI------EQFLDEYVKALR-----KTQEAFLL---NQSPGWEVKSATLQN 1007

Query: 363  VASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGV 542
            +  NISG+T +QL VFL+TCISRYHSKK                EPGTQMTLKTFHFAGV
Sbjct: 1008 IVQNISGVTPRQLKVFLDTCISRYHSKKVDAGTAIGVIGAQSIGEPGTQMTLKTFHFAGV 1067

Query: 543  ASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQVAKSIK 722
            ASMNVTLGVPRIKEIIN AK I+TPIITT L+CDNN +IA++V GRIEKT L QVA+ I+
Sbjct: 1068 ASMNVTLGVPRIKEIINGAKNIHTPIITTVLECDNNPMIARMVAGRIEKTNLGQVAECIE 1127

Query: 723  TSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPRKLEVIL 902
               + R A + + LDM  IQ A LS+DA  VK+SIL TP++KLK + +RV + + +EV  
Sbjct: 1128 IVMSPRAAYVEVKLDMAVIQDAHLSIDANVVKQSILGTPRIKLKHEHIRVPDNQTVEVHS 1187

Query: 903  -QADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSG-------NKRLKLL 1058
             + DR KL F L+ LK+ +  V+V+GI ++ER +I  E  ++D           K+ KL 
Sbjct: 1188 HEKDRRKLHFHLYYLKSILPNVIVRGIKTIERVVIDEEKVKRDKKDIDIKCGDEKKYKLF 1247

Query: 1059 VEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRH 1238
             EG GLL+VM   GVDGCKTTSN IIEVQQTLGIEAAR  II+EI+YTM SHGM ID RH
Sbjct: 1248 AEGKGLLAVMSTKGVDGCKTTSNDIIEVQQTLGIEAARTCIIEEIKYTMKSHGMNIDDRH 1307

Query: 1239 MMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSEC 1418
            MMLLAD+MTF+G VLGITR GVQ+M  SVLMLASFE+T DHLFNASV G VD+IEGVSE 
Sbjct: 1308 MMLLADVMTFRGLVLGITRFGVQQMGKSVLMLASFERTDDHLFNASVQGTVDKIEGVSES 1367

Query: 1419 IIMGIPMQIGTGMLKVRQ 1472
            IIMGIPM IGTGM K++Q
Sbjct: 1368 IIMGIPMPIGTGMFKIKQ 1385


>ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Glycine
            max]
          Length = 1391

 Score =  471 bits (1213), Expect = e-130
 Identities = 269/507 (53%), Positives = 330/507 (65%), Gaps = 2/507 (0%)
 Frame = +3

Query: 3    MDPAQMEEKSGLPLNFERLLMKTKATCPAIEQKSXXXXXXXXXXXXXXXXRLSKSTTTRE 182
            MDPA ME K+G PLNFERL +K+KA CP  E                       S    +
Sbjct: 910  MDPAGMEGKNGKPLNFERLFLKSKAICPNDEDDEILSSSDVSKVVHEKLSEFDMSRLAEK 969

Query: 183  EGFAHNFASSSDTPSNKEGCLEAFQNSLRNFIMKKYPSSILMLKSNERQHSEEDRSCLEN 362
              F   F++              F  SL++FI           K  E   ++E    L+ 
Sbjct: 970  GVFEVGFSAD-------------FVESLQSFIKDN-------AKLTEEGFTDEHSQNLKK 1009

Query: 363  VASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGV 542
                ISGITR+QL VFL  C+SRYHSKK                EPGTQMTLKTFHFAGV
Sbjct: 1010 FGQRISGITRKQLDVFLNICLSRYHSKKMEAGAPVGATGAHSIGEPGTQMTLKTFHFAGV 1069

Query: 543  ASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQVAKSIK 722
            ASMNVTLGVPR+KEI+N  K+I+TPIIT  L+ D+N   A++VKGRIEKT L QVAKSIK
Sbjct: 1070 ASMNVTLGVPRVKEIMNGNKKISTPIITAILERDDNANTARIVKGRIEKTNLGQVAKSIK 1129

Query: 723  TSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPRKLEVIL 902
                SR AS+VITLDMKRIQ A L++DA  VKESIL+T K KLK + +++L+ +KLEV+ 
Sbjct: 1130 VVMTSRSASVVITLDMKRIQDAHLNIDANIVKESILRTKKTKLKPEHIKILDIKKLEVVP 1189

Query: 903  Q-ADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGNKRLKLLVEGTGLL 1079
            Q  DR+K+ F+LH LKN +  VVVKGI +V+R +I  + K       ++ +LLVEGTG  
Sbjct: 1190 QDVDRSKIHFQLHYLKNLLPTVVVKGIKTVDRVVISKDTKA------EKFRLLVEGTGFR 1243

Query: 1080 SVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTM-SSHGMTIDIRHMMLLAD 1256
             VMG++G+DG KT SNHI EV+ TLGIEAAR+ I+ EI+YTM  +HGM IDIRHMMLLAD
Sbjct: 1244 EVMGVEGIDGRKTVSNHIHEVRDTLGIEAARESIVKEIKYTMVDTHGMNIDIRHMMLLAD 1303

Query: 1257 LMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSECIIMGIP 1436
            +MT  G +LGI R G+ KM  SVLMLASFE+TAD LF ASV GR D I GVSE IIMGIP
Sbjct: 1304 MMTATGHILGINRFGISKMGKSVLMLASFERTADILFQASVRGRDDSIGGVSESIIMGIP 1363

Query: 1437 MQIGTGMLKVRQSVQPVELNYGPDPII 1517
            +QIGTGM+KV+Q + P EL +G  PI+
Sbjct: 1364 IQIGTGMIKVKQRLDPPELPHGTSPIL 1390


>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
          Length = 1819

 Score =  470 bits (1210), Expect = e-130
 Identities = 255/378 (67%), Positives = 299/378 (79%), Gaps = 1/378 (0%)
 Frame = +3

Query: 387  TRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLG 566
            +R++L VFL+TCISRY  K+                EPGTQMTLKTFHFAGVASMNVTLG
Sbjct: 1448 SRKRLGVFLDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLG 1507

Query: 567  VPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQVAKSIKTSQASRLA 746
            VPRIKEIIN AKRI+TPIIT  L+C+NN   A++VKGRIE+T L QVAKSIK    SRLA
Sbjct: 1508 VPRIKEIINGAKRISTPIITAALECNNNVKTARMVKGRIERTTLGQVAKSIKIVLTSRLA 1567

Query: 747  SIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPRKLEVILQADRNKLQ 926
             I + LDM+ IQ +QLS+D+  V+ESIL+  ++KLK+Q ++VL+  KLEV  Q DR+ + 
Sbjct: 1568 LIAVALDMEGIQASQLSIDSNIVRESILRNRRIKLKQQHIKVLDAGKLEVHPQGDRSTIH 1627

Query: 927  FELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGNKRLKLLVEGTGLLSVMGIDGVD 1106
            FELH LKN +  VVVKGI +VERA+I  + K K         LLVEGTGL +VMG +GV 
Sbjct: 1628 FELHALKNLLPTVVVKGIETVERAVINKDNKVK-------YNLLVEGTGLQTVMGTEGVI 1680

Query: 1107 GCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRHMMLLADLMTFKGEVLG 1286
            G +TTSNHIIEVQQTLGIEAARK II+EIQYTM+SHGM+IDIRHMMLLADLMTF+GEVLG
Sbjct: 1681 GRETTSNHIIEVQQTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLMTFRGEVLG 1740

Query: 1287 ITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSECIIMGIPMQIGTGMLKV 1466
            ITR G+QKM  SVLMLASFEKTADHLFNASV+GR D+IEGVSECIIMGIPMQ+GTG+LKV
Sbjct: 1741 ITRFGIQKMDKSVLMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGILKV 1800

Query: 1467 RQSVQPV-ELNYGPDPII 1517
            RQ +Q V EL+YG DPII
Sbjct: 1801 RQRLQQVPELSYGLDPII 1818



 Score = 66.2 bits (160), Expect = 4e-08
 Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
 Frame = +3

Query: 3    MDPAQMEEKSGLPLNFERLLMKTKATCPAIEQKSXXXXXXXXXXXXXXXXRLSKSTTTRE 182
            MDPA+ME K G PLNF RL +K KATCPA E  S                ++ ++    +
Sbjct: 904  MDPARMEGKDGFPLNFNRLFLKVKATCPAGENAS------------LSALQIEETVKRLK 951

Query: 183  EGFAHNFASSSDTPSNKEGCLEAFQNSLRNFI---MKKYPSSILMLKSNERQHSEEDRSC 353
            E   HN        ++ EGC +AF+ +L  F+    +K+ ++   L  +     EE+   
Sbjct: 952  E---HN--------TSAEGCSDAFKTNLSGFLEECKEKFKNTREALGLHGEHVGEENLDI 1000

Query: 354  LENVASNISGITRQQL 401
             E  A NISGIT +QL
Sbjct: 1001 QEKFAKNISGITSKQL 1016


>ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi|162691719|gb|EDQ78080.1|
            predicted protein [Physcomitrella patens]
          Length = 1397

 Score =  469 bits (1208), Expect = e-129
 Identities = 277/515 (53%), Positives = 340/515 (66%), Gaps = 10/515 (1%)
 Frame = +3

Query: 3    MDPAQMEEKSGLPLNFERLLMKTKATCPAIEQKSXXXXXXXXXXXXXXXXRLSKSTTTRE 182
            MDP  ME K G P N +R+LMKTKATCP+  Q                   L    T  E
Sbjct: 913  MDPVYMEGKDGAPFNLDRMLMKTKATCPSYGQ-------------------LGLPPTEIE 953

Query: 183  EGFAHNFASSSDTPSNKEGCLEAFQNSLRNFI---MKKYPSSILMLKSNERQHSEEDRSC 353
            + F          P      + AF+ SL+ F+   +K   S+   L      +   D++ 
Sbjct: 954  KLFNERLTK----PDMTSETVGAFKTSLKKFMDSCIKDNISTRTKLGLPLDCNGGPDQTL 1009

Query: 354  LENVASNISGITRQQLI-----VFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMTL 518
            LE+ A+ ISG+T +QL      VFL+TCI RYH K+                EPGTQMTL
Sbjct: 1010 LESTATYISGLTSRQLEICLLQVFLDTCIKRYHMKRVEPGAAVGAVGAQSIGEPGTQMTL 1069

Query: 519  KTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLL 698
            KTFHFAGVASMN+TLGVPRIKEIINA+K I+TPIIT  L   N+E  A++VKGRIEKT L
Sbjct: 1070 KTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAVLVSGNDEKAARIVKGRIEKTTL 1129

Query: 699  EQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLN 878
             +VAKSIKT   +  A I + LDMKRI   QL +++ TV  +I+QTPK+KLK   +R+++
Sbjct: 1130 GEVAKSIKTVLRASQAIISVKLDMKRIDALQLDINSDTVALAIVQTPKIKLKHVNIRIVD 1189

Query: 879  PRKLEVIL-QADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGNKRLKL 1055
              KL VI    D+ KL F LH+L N + KV+VKGI SVERA+I    KEK         L
Sbjct: 1190 RDKLIVIPPDQDKGKLYFYLHSLCNMLPKVIVKGIPSVERAVI---NKEKGV-----YNL 1241

Query: 1056 LVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIR 1235
            LVEGT L +VMGI GV+G  T SNH+IE +QTLGIEAAR  IIDEIQYTM SHGMTID R
Sbjct: 1242 LVEGTNLKAVMGISGVNGKLTKSNHVIEAEQTLGIEAARNVIIDEIQYTMGSHGMTIDAR 1301

Query: 1236 HMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSE 1415
            HMMLLAD+MT+KGEVLGITR G+ KMKDSVLMLASFEKT DHLF+A+++GRVD+IEGVSE
Sbjct: 1302 HMMLLADVMTYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAIHGRVDKIEGVSE 1361

Query: 1416 CIIMGIPMQIGTGMLKVRQSVQPV-ELNYGPDPII 1517
            CIIMGIPM IGTG+ K+RQ V+ + +L+YGP P++
Sbjct: 1362 CIIMGIPMPIGTGLFKIRQKVEKLPKLSYGPTPLL 1396


>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1394

 Score =  469 bits (1206), Expect = e-129
 Identities = 267/504 (52%), Positives = 337/504 (66%), Gaps = 14/504 (2%)
 Frame = +3

Query: 3    MDPAQMEEKSGLPLNFERLLMKTKATCPAIEQKSXXXXXXXXXXXXXXXXRLSKSTTTRE 182
            +DPA ME K+G+PLNF+RL MK KATC A E +                  + +S   + 
Sbjct: 911  LDPAIMEGKAGVPLNFDRLFMKVKATCGAEEDE---------YLSPSDISNIVQSLLLKH 961

Query: 183  EGFAHNFASSSDTPSNKEGCLEAFQNSLRNFI---MKKYPSSILMLKSNERQHSEEDRSC 353
             G                 C E+F+ SL +F+    K+    + ++   E ++ E  ++ 
Sbjct: 962  NGTLDGI------------CSESFRKSLSSFLGDQAKRLECLMKLVDGVEVENFENIKNV 1009

Query: 354  ---------LENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGT 506
                      E +A  +SGIT +QL VFL+TC+ RY  K+                EPGT
Sbjct: 1010 EGLTGISKNTEKIAQKVSGITEKQLEVFLKTCLDRYVWKRIEPGTAIGAIGAQSIGEPGT 1069

Query: 507  QMTLKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIE 686
            QMTLKTFHFAGVASMN+T GVPRIKEIIN AKRI+TPIIT  L+ ++N   A+++KGRI+
Sbjct: 1070 QMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITVELEHNSNVNAARIIKGRIQ 1129

Query: 687  KTLLEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQV 866
            KT+L QVAKSIK    SR AS+ +TLDMK I+ AQLS+DA  V+E IL+TPK+K K Q++
Sbjct: 1130 KTVLGQVAKSIKIVMTSRSASVKVTLDMKTIREAQLSLDANIVRELILETPKIKRKLQRI 1189

Query: 867  RVLNPRKLEVILQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKE--KDPSGN 1040
             VL   KLEV    DRNKL FELH+LKN +  VVVKGI +VER +I  +  +  ++  G 
Sbjct: 1190 NVLEDGKLEVFPGGDRNKLHFELHSLKNMLPAVVVKGIKTVERVVIAQKKLDDAENDQGG 1249

Query: 1041 KRLKLLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGM 1220
             +  + VEG GL +VMG +GVDG KT SNHIIEVQ+TLGIEAARK IIDEI+ TM SHGM
Sbjct: 1250 PKYNMFVEGMGLQAVMGTEGVDGRKTKSNHIIEVQETLGIEAARKCIIDEIKGTMESHGM 1309

Query: 1221 TIDIRHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRI 1400
            +IDIRHMMLLAD+MT +G VLGITR G+QKM  SVLMLASFEKT+DHLFNASV G+ D+I
Sbjct: 1310 SIDIRHMMLLADVMTSRGVVLGITRFGIQKMDKSVLMLASFEKTSDHLFNASVKGKDDKI 1369

Query: 1401 EGVSECIIMGIPMQIGTGMLKVRQ 1472
            EGVSECIIMGIP+ IGTG+LK++Q
Sbjct: 1370 EGVSECIIMGIPVAIGTGVLKIQQ 1393


>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
            gi|241937900|gb|EES11045.1| hypothetical protein
            SORBIDRAFT_06g021120 [Sorghum bicolor]
          Length = 1391

 Score =  467 bits (1201), Expect = e-129
 Identities = 269/514 (52%), Positives = 343/514 (66%), Gaps = 9/514 (1%)
 Frame = +3

Query: 3    MDPAQMEEKSGLPLNFERLLMKTKATCPAIEQKSXXXXXXXXXXXXXXXXRLSKSTTTRE 182
            MDPA+ME K G+PLN ++L MK  ATCP   Q+                  L   T    
Sbjct: 905  MDPAKMEGKDGMPLNLDQLFMKVMATCP---QRGSDTLSPEAIKQMLEDKLLQHDT---- 957

Query: 183  EGFAHNFASSSDTPSNKEGCLEAFQNSLRNFIMKKYPSSILMLKSNER------QHSEED 344
                          S+  GC E F+ +L  F+ K+    I ++K   R       H E+ 
Sbjct: 958  --------------SSDGGCSEEFKKNLTEFLDKR----IELMKCTRRALHLHEDHVEKK 999

Query: 345  RSCLE-NVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMTLK 521
             SC+E +VA+ ISGI+ +QL VFL+TC+SRY SKK                EPGTQMTLK
Sbjct: 1000 DSCVEESVAAIISGISAKQLQVFLDTCLSRYQSKKIEAGASIGAIGAQSIGEPGTQMTLK 1059

Query: 522  TFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLE 701
            TFHFAGVASMNVTLGVPRIKEIINAA++I+TPIIT  L    + + A++VKG +EK +L 
Sbjct: 1060 TFHFAGVASMNVTLGVPRIKEIINAARKISTPIITAQLLSKKDVLSARIVKGSMEKAVLG 1119

Query: 702  QVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNP 881
            +VA +I+    S   ++++ LDM+ I+   + + A +V+ SIL  PK+KLK + VRV++ 
Sbjct: 1120 EVAVAIQIVLKSSQPNLIVKLDMQLIESLHMGISADSVQLSILNHPKIKLKSEHVRVIDR 1179

Query: 882  RKLEVI-LQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGNKRLKLL 1058
             KL +     D+ KLQ ELH LK+ + KV+VKGI +VER ++I+E K K+ +  +R +LL
Sbjct: 1180 AKLRIYPAGTDKRKLQLELHNLKSILPKVIVKGIPTVER-VVIDEVKVKNET--ERYQLL 1236

Query: 1059 VEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRH 1238
            VEGT LL+VMG  GVD  KT SNHI+E  QTLGIEAAR+ IIDEIQYTM SHGM ID RH
Sbjct: 1237 VEGTNLLAVMGTPGVDATKTKSNHIMETNQTLGIEAARRSIIDEIQYTMKSHGMNIDRRH 1296

Query: 1239 MMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSEC 1418
            MMLLADLMT+KGE+LGITR+G+ KMK SVLMLASFEKT++HLFNAS +GR D+IEGVSEC
Sbjct: 1297 MMLLADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTSEHLFNASYSGREDQIEGVSEC 1356

Query: 1419 IIMGIPMQIGTGMLKVRQSVQPV-ELNYGPDPII 1517
            IIMGIPMQ+GTG+LKVRQ +  V E  Y PDPI+
Sbjct: 1357 IIMGIPMQLGTGILKVRQRLDHVPEFKYQPDPIL 1390