BLASTX nr result
ID: Rehmannia24_contig00001744
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00001744
(955 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOX94777.1| Chloroplast stem-loop binding protein of 41 kDa i... 437 e-120
ref|XP_002306773.2| hypothetical protein POPTR_0005s23110g [Popu... 433 e-119
gb|EXB39373.1| hypothetical protein L484_025068 [Morus notabilis] 426 e-117
ref|XP_002275066.1| PREDICTED: uncharacterized protein At3g63140... 426 e-117
ref|XP_002878498.1| hypothetical protein ARALYDRAFT_486816 [Arab... 425 e-116
ref|XP_002302114.1| mRNA-binding family protein [Populus trichoc... 425 e-116
ref|XP_004140080.1| PREDICTED: chloroplast stem-loop binding pro... 424 e-116
gb|EMJ01093.1| hypothetical protein PRUPE_ppa006606mg [Prunus pe... 421 e-116
ref|XP_006291238.1| hypothetical protein CARUB_v10017370mg [Caps... 423 e-116
ref|XP_004290655.1| PREDICTED: chloroplast stem-loop binding pro... 422 e-116
ref|NP_191873.1| chloroplast stem-loop binding protein-41 [Arabi... 422 e-116
ref|XP_006349675.1| PREDICTED: chloroplast stem-loop binding pro... 422 e-116
ref|NP_001234656.1| mRNA binding protein precursor [Solanum lyco... 422 e-115
gb|AAP87140.1| mRNA-binding protein precursor, partial [Nicotian... 421 e-115
ref|XP_006402306.1| hypothetical protein EUTSA_v10006498mg [Eutr... 421 e-115
ref|XP_004955807.1| PREDICTED: chloroplast stem-loop binding pro... 420 e-115
ref|XP_003518924.1| PREDICTED: chloroplast stem-loop binding pro... 420 e-115
ref|XP_006444077.1| hypothetical protein CICLE_v10020449mg [Citr... 419 e-115
gb|EOX94778.1| Chloroplast stem-loop binding protein of 41 kDa i... 418 e-114
ref|XP_003536518.1| PREDICTED: chloroplast stem-loop binding pro... 416 e-114
>gb|EOX94777.1| Chloroplast stem-loop binding protein of 41 kDa isoform 1
[Theobroma cacao]
Length = 400
Score = 437 bits (1123), Expect = e-120
Identities = 216/246 (87%), Positives = 226/246 (91%), Gaps = 3/246 (1%)
Frame = -2
Query: 729 PPSFAVRA---EKKNVLVVNTNSGGHAVIGFYFAKELLAAGHGVTILTVGEEGSDKMKKP 559
P SF V+A EKK VL+VNTNSGGHAVIGFYFAKELL +GH VTILTVG+EGSDKMKKP
Sbjct: 61 PSSFTVKASGGEKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTILTVGDEGSDKMKKP 120
Query: 558 PFNRFSEIVSGGGKTVWGEPADIGKVLEGATFDVVLDNNGKDLDTVRPVADCAKSSGVKQ 379
PFNRFSEIVS GGKTVWG+PAD+GKV+ GATFDVVLDNNGKDLDTVRPV D AKSSGV Q
Sbjct: 121 PFNRFSEIVSAGGKTVWGDPADVGKVVAGATFDVVLDNNGKDLDTVRPVIDWAKSSGVDQ 180
Query: 378 FLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEKYISETFGNWASFRPQYMIGSGNNKD 199
FL+ISSAGIYKPTDEPPHVEGD VKADAGHVGVEKYI+E F +WA FRPQYMIGSGNNKD
Sbjct: 181 FLYISSAGIYKPTDEPPHVEGDVVKADAGHVGVEKYIAEIFSSWAIFRPQYMIGSGNNKD 240
Query: 198 CEEWFFDRIVRGRPVLIPGSGMQLTNIAHVRDLSSMLTLAVEKPEAASGNIFNCVSDRAV 19
CEEWFFDRIVR RPV IPGSGMQLTNIAHVRDLSSMLTLAVEKPEAAS NIFNCVSDRAV
Sbjct: 241 CEEWFFDRIVRKRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPEAASSNIFNCVSDRAV 300
Query: 18 TLDGMA 1
TLDGMA
Sbjct: 301 TLDGMA 306
>ref|XP_002306773.2| hypothetical protein POPTR_0005s23110g [Populus trichocarpa]
gi|550339578|gb|EEE93769.2| hypothetical protein
POPTR_0005s23110g [Populus trichocarpa]
Length = 437
Score = 433 bits (1113), Expect = e-119
Identities = 215/252 (85%), Positives = 226/252 (89%)
Frame = -2
Query: 756 SPRRAVSSFPPSFAVRAEKKNVLVVNTNSGGHAVIGFYFAKELLAAGHGVTILTVGEEGS 577
S R SSFP A AEKK +L+VNTNSGGHAVIGFYFAKELL +GH V+ILTVGEE S
Sbjct: 93 SRRLFASSFPVK-ASAAEKKKILIVNTNSGGHAVIGFYFAKELLGSGHEVSILTVGEESS 151
Query: 576 DKMKKPPFNRFSEIVSGGGKTVWGEPADIGKVLEGATFDVVLDNNGKDLDTVRPVADCAK 397
DKMKKPPF+RFSEIV GGKTVWG PA++GK +EGATFDVVLDNNGKDLDTVRPV D AK
Sbjct: 152 DKMKKPPFSRFSEIVGAGGKTVWGNPAEVGKAVEGATFDVVLDNNGKDLDTVRPVVDWAK 211
Query: 396 SSGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEKYISETFGNWASFRPQYMIG 217
S+GVKQFLFISSAGIYKPTDEPPHVEGD VKADAGHVGVEKYI+E F +WA FRPQYMIG
Sbjct: 212 SAGVKQFLFISSAGIYKPTDEPPHVEGDVVKADAGHVGVEKYIAEIFSSWAIFRPQYMIG 271
Query: 216 SGNNKDCEEWFFDRIVRGRPVLIPGSGMQLTNIAHVRDLSSMLTLAVEKPEAASGNIFNC 37
SGNNKDCEEWFFDRIVR RPV IPGSGMQLTNIAHVRDLSSMLTLAVE PEAASGNIFNC
Sbjct: 272 SGNNKDCEEWFFDRIVRKRPVPIPGSGMQLTNIAHVRDLSSMLTLAVENPEAASGNIFNC 331
Query: 36 VSDRAVTLDGMA 1
VSDRAVTLDGMA
Sbjct: 332 VSDRAVTLDGMA 343
>gb|EXB39373.1| hypothetical protein L484_025068 [Morus notabilis]
Length = 408
Score = 426 bits (1096), Expect = e-117
Identities = 207/244 (84%), Positives = 225/244 (92%), Gaps = 3/244 (1%)
Frame = -2
Query: 723 SFAVRA---EKKNVLVVNTNSGGHAVIGFYFAKELLAAGHGVTILTVGEEGSDKMKKPPF 553
SF+VRA +KK VL+VNTNSGGHAVIGFYFAKELL +GH VTILTVG+EGSDKMKKPPF
Sbjct: 71 SFSVRASAADKKRVLIVNTNSGGHAVIGFYFAKELLGSGHDVTILTVGDEGSDKMKKPPF 130
Query: 552 NRFSEIVSGGGKTVWGEPADIGKVLEGATFDVVLDNNGKDLDTVRPVADCAKSSGVKQFL 373
NRFSEIVS GGKTVWG+PA++GKV+ GA FDVVLDNNGKDLDTVRPV D AKSSGVK F
Sbjct: 131 NRFSEIVSAGGKTVWGDPAEVGKVVGGAEFDVVLDNNGKDLDTVRPVVDWAKSSGVKHFF 190
Query: 372 FISSAGIYKPTDEPPHVEGDTVKADAGHVGVEKYISETFGNWASFRPQYMIGSGNNKDCE 193
FISSAGIYKPTDEPPHVEGD VKADAGHVGVEKYI+E F +WA+FRPQYMIGSGNNKDCE
Sbjct: 191 FISSAGIYKPTDEPPHVEGDVVKADAGHVGVEKYIAEVFSSWAAFRPQYMIGSGNNKDCE 250
Query: 192 EWFFDRIVRGRPVLIPGSGMQLTNIAHVRDLSSMLTLAVEKPEAASGNIFNCVSDRAVTL 13
EWFFDRIVR RPV IPGSG+QLTNI+HV+DLSSML+LAVEKPEAA+GNIFNCVSDR VTL
Sbjct: 251 EWFFDRIVRDRPVPIPGSGLQLTNISHVKDLSSMLSLAVEKPEAANGNIFNCVSDRTVTL 310
Query: 12 DGMA 1
DG+A
Sbjct: 311 DGIA 314
>ref|XP_002275066.1| PREDICTED: uncharacterized protein At3g63140, chloroplastic [Vitis
vinifera] gi|147789789|emb|CAN73874.1| hypothetical
protein VITISV_039540 [Vitis vinifera]
Length = 397
Score = 426 bits (1095), Expect = e-117
Identities = 206/238 (86%), Positives = 220/238 (92%)
Frame = -2
Query: 714 VRAEKKNVLVVNTNSGGHAVIGFYFAKELLAAGHGVTILTVGEEGSDKMKKPPFNRFSEI 535
V+A+KK VL+VNTNSGGHAVIGFYFAK+LL +GH VTI+TVGEE SDKMKKPPF+RFSEI
Sbjct: 66 VKAQKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTIMTVGEENSDKMKKPPFSRFSEI 125
Query: 534 VSGGGKTVWGEPADIGKVLEGATFDVVLDNNGKDLDTVRPVADCAKSSGVKQFLFISSAG 355
S GGKTVWG+PA++GKV+ GA FDVVLDNNGKD+DTVRPV D AKSSGV+QFLFISSAG
Sbjct: 126 TSAGGKTVWGDPAEVGKVVAGAAFDVVLDNNGKDIDTVRPVVDWAKSSGVEQFLFISSAG 185
Query: 354 IYKPTDEPPHVEGDTVKADAGHVGVEKYISETFGNWASFRPQYMIGSGNNKDCEEWFFDR 175
IYKPTDEPPHVEGD VKADAGHVGVE YISE FG+WA FRPQYMIGSGNNKDCEEWFFDR
Sbjct: 186 IYKPTDEPPHVEGDIVKADAGHVGVETYISEVFGSWAIFRPQYMIGSGNNKDCEEWFFDR 245
Query: 174 IVRGRPVLIPGSGMQLTNIAHVRDLSSMLTLAVEKPEAASGNIFNCVSDRAVTLDGMA 1
IVR RPV IPGSGMQLTNIAHVRDLSSMLTLAVE P AASGNIFNCVSDRAVTLDGMA
Sbjct: 246 IVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVENPAAASGNIFNCVSDRAVTLDGMA 303
>ref|XP_002878498.1| hypothetical protein ARALYDRAFT_486816 [Arabidopsis lyrata subsp.
lyrata] gi|297324336|gb|EFH54757.1| hypothetical protein
ARALYDRAFT_486816 [Arabidopsis lyrata subsp. lyrata]
Length = 408
Score = 425 bits (1093), Expect = e-116
Identities = 207/247 (83%), Positives = 223/247 (90%), Gaps = 4/247 (1%)
Frame = -2
Query: 729 PPSFAVRA----EKKNVLVVNTNSGGHAVIGFYFAKELLAAGHGVTILTVGEEGSDKMKK 562
P F V+A +KKNVL+VNTNSGGHAVIGFYFAKELL+AGHGVTI+TVG+E SDKMKK
Sbjct: 68 PQGFTVKASSVGDKKNVLIVNTNSGGHAVIGFYFAKELLSAGHGVTIMTVGDESSDKMKK 127
Query: 561 PPFNRFSEIVSGGGKTVWGEPADIGKVLEGATFDVVLDNNGKDLDTVRPVADCAKSSGVK 382
PPFNRFSEI+SGGGKTVWG PAD+ V+ G TFDVVLDNNGKDLDTVRPV D AKSSGVK
Sbjct: 128 PPFNRFSEIISGGGKTVWGNPADVANVVGGETFDVVLDNNGKDLDTVRPVVDWAKSSGVK 187
Query: 381 QFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEKYISETFGNWASFRPQYMIGSGNNK 202
QFLFISSAGIYK T++PPHVEGD VKADAGHV VEKY++ETFGNWASFRPQYMIGSGNNK
Sbjct: 188 QFLFISSAGIYKSTEQPPHVEGDAVKADAGHVAVEKYLAETFGNWASFRPQYMIGSGNNK 247
Query: 201 DCEEWFFDRIVRGRPVLIPGSGMQLTNIAHVRDLSSMLTLAVEKPEAASGNIFNCVSDRA 22
DCEEWFFDRIVR R V IPGSG+QLTNI+HVRDLSSMLT AV P+AASGNIFNCVSDRA
Sbjct: 248 DCEEWFFDRIVRDRAVPIPGSGLQLTNISHVRDLSSMLTSAVTNPKAASGNIFNCVSDRA 307
Query: 21 VTLDGMA 1
VTLDGMA
Sbjct: 308 VTLDGMA 314
>ref|XP_002302114.1| mRNA-binding family protein [Populus trichocarpa]
gi|222843840|gb|EEE81387.1| mRNA-binding family protein
[Populus trichocarpa]
Length = 404
Score = 425 bits (1093), Expect = e-116
Identities = 211/247 (85%), Positives = 221/247 (89%), Gaps = 3/247 (1%)
Frame = -2
Query: 732 FPPSFAVRA---EKKNVLVVNTNSGGHAVIGFYFAKELLAAGHGVTILTVGEEGSDKMKK 562
F SF V+A EKK VL+VNTNSGGHAVIGFYFAKELL +GH VTILTVGEE SDKMKK
Sbjct: 64 FTSSFTVKASAAEKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTILTVGEESSDKMKK 123
Query: 561 PPFNRFSEIVSGGGKTVWGEPADIGKVLEGATFDVVLDNNGKDLDTVRPVADCAKSSGVK 382
PPF+RFSEIVS GGKTVWG PA++GKV+EGA FDVVLDNNGKDLD VRPV D AKS+GVK
Sbjct: 124 PPFSRFSEIVSAGGKTVWGNPAEVGKVVEGAAFDVVLDNNGKDLDAVRPVVDWAKSAGVK 183
Query: 381 QFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEKYISETFGNWASFRPQYMIGSGNNK 202
QFLFISSAGIYK TDEPPHVEGD VKADAGHVGVEKYI+E F +WA FRPQYMIGSGNNK
Sbjct: 184 QFLFISSAGIYKATDEPPHVEGDVVKADAGHVGVEKYIAEIFSSWAIFRPQYMIGSGNNK 243
Query: 201 DCEEWFFDRIVRGRPVLIPGSGMQLTNIAHVRDLSSMLTLAVEKPEAASGNIFNCVSDRA 22
DCEEWFFDRIVR RPV IPGSGMQLTNIAH RDLSSMLTLAVE PEAASG IFNCVSDRA
Sbjct: 244 DCEEWFFDRIVRKRPVPIPGSGMQLTNIAHARDLSSMLTLAVENPEAASGRIFNCVSDRA 303
Query: 21 VTLDGMA 1
VTLDGMA
Sbjct: 304 VTLDGMA 310
>ref|XP_004140080.1| PREDICTED: chloroplast stem-loop binding protein of 41 kDa a,
chloroplastic-like [Cucumis sativus]
Length = 409
Score = 424 bits (1090), Expect = e-116
Identities = 212/253 (83%), Positives = 226/253 (89%), Gaps = 7/253 (2%)
Frame = -2
Query: 738 SSFPPS----FAVRAE---KKNVLVVNTNSGGHAVIGFYFAKELLAAGHGVTILTVGEEG 580
SSF PS F+VRA KK VL+VNTNSGGHAVIGFYFAK+LL +GH VTILTVGE+
Sbjct: 63 SSFRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEQS 122
Query: 579 SDKMKKPPFNRFSEIVSGGGKTVWGEPADIGKVLEGATFDVVLDNNGKDLDTVRPVADCA 400
SDKM KPPFNRFSEIVSGGGKTVWG+PA+IGKV+EGA+FDVVLDNNGKD+DTVRPV D A
Sbjct: 123 SDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVIDWA 182
Query: 399 KSSGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEKYISETFGNWASFRPQYMI 220
KSSGVKQFLFISSAGIYK TDEPPHVEGD VKADAGHVGVEKYI+E F +WA FRPQYMI
Sbjct: 183 KSSGVKQFLFISSAGIYKTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMI 242
Query: 219 GSGNNKDCEEWFFDRIVRGRPVLIPGSGMQLTNIAHVRDLSSMLTLAVEKPEAASGNIFN 40
GSGNNKDCEEWFFDRIVR RP+ IPGSGMQLTNIAHVRDLSSMLTLAVEKP+ A NIFN
Sbjct: 243 GSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFN 302
Query: 39 CVSDRAVTLDGMA 1
CVS RAVTLDGMA
Sbjct: 303 CVSGRAVTLDGMA 315
>gb|EMJ01093.1| hypothetical protein PRUPE_ppa006606mg [Prunus persica]
Length = 403
Score = 421 bits (1083), Expect(2) = e-116
Identities = 204/244 (83%), Positives = 223/244 (91%), Gaps = 3/244 (1%)
Frame = -2
Query: 723 SFAVRA---EKKNVLVVNTNSGGHAVIGFYFAKELLAAGHGVTILTVGEEGSDKMKKPPF 553
SF+++A EKK VL+VNTN GGHAVIGFYFAKELL +GH VT+LTVGEE SDKMKKPPF
Sbjct: 66 SFSIKASAGEKKKVLIVNTNGGGHAVIGFYFAKELLGSGHQVTVLTVGEESSDKMKKPPF 125
Query: 552 NRFSEIVSGGGKTVWGEPADIGKVLEGATFDVVLDNNGKDLDTVRPVADCAKSSGVKQFL 373
+RFSEIVS GGKTVWGEPADIGK+LEG FDVVL+NNGKDLDTVRPVAD AKSSGVKQFL
Sbjct: 126 SRFSEIVSAGGKTVWGEPADIGKILEGTAFDVVLENNGKDLDTVRPVADWAKSSGVKQFL 185
Query: 372 FISSAGIYKPTDEPPHVEGDTVKADAGHVGVEKYISETFGNWASFRPQYMIGSGNNKDCE 193
+ISSAGIYKPT+EPPHVEGD VKADA HV VEKYI+E FG+WA FRPQYM+GSGNNKDCE
Sbjct: 186 YISSAGIYKPTEEPPHVEGDVVKADASHVAVEKYIAEIFGSWAIFRPQYMLGSGNNKDCE 245
Query: 192 EWFFDRIVRGRPVLIPGSGMQLTNIAHVRDLSSMLTLAVEKPEAASGNIFNCVSDRAVTL 13
EWFFDRI+R RPV IPGSG+QLTNI+HVRDLSSMLTLAVE P+AAS NIFNCVSDRAVTL
Sbjct: 246 EWFFDRILRDRPVPIPGSGLQLTNISHVRDLSSMLTLAVENPDAASSNIFNCVSDRAVTL 305
Query: 12 DGMA 1
DG+A
Sbjct: 306 DGLA 309
Score = 25.0 bits (53), Expect(2) = e-116
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -1
Query: 838 PISLFNLPSLSLLISLHFPFFSCSL 764
P SL +LP LSL S HF S SL
Sbjct: 22 PPSLSHLPRLSLSSSSHFSTLSSSL 46
>ref|XP_006291238.1| hypothetical protein CARUB_v10017370mg [Capsella rubella]
gi|482559945|gb|EOA24136.1| hypothetical protein
CARUB_v10017370mg [Capsella rubella]
Length = 404
Score = 423 bits (1088), Expect = e-116
Identities = 210/256 (82%), Positives = 226/256 (88%), Gaps = 4/256 (1%)
Frame = -2
Query: 756 SPRRAVSSFPPSFAVRA----EKKNVLVVNTNSGGHAVIGFYFAKELLAAGHGVTILTVG 589
S R + +S P F V+A EKKNVL+VNTNSGGHAVIGFYFAKELL+AGHGVTI+TVG
Sbjct: 55 SLRTSRTSSPQRFTVKASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHGVTIMTVG 114
Query: 588 EEGSDKMKKPPFNRFSEIVSGGGKTVWGEPADIGKVLEGATFDVVLDNNGKDLDTVRPVA 409
+E SDKMKKPPF+RFSEIVS GGKTVWG PAD+ V+ G TFDVVLDNNGKDLDTVRPV
Sbjct: 115 DESSDKMKKPPFSRFSEIVSAGGKTVWGNPADVANVIGGQTFDVVLDNNGKDLDTVRPVV 174
Query: 408 DCAKSSGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEKYISETFGNWASFRPQ 229
D AKSSGVKQFLFISSAGIYK T+EPPHVEGD VKADAGHVGVEKY++ETFGNWASFRPQ
Sbjct: 175 DWAKSSGVKQFLFISSAGIYKSTEEPPHVEGDAVKADAGHVGVEKYLAETFGNWASFRPQ 234
Query: 228 YMIGSGNNKDCEEWFFDRIVRGRPVLIPGSGMQLTNIAHVRDLSSMLTLAVEKPEAASGN 49
YMIGSGNNKDCEEWFFDRIVR R V IPGSG+QLTNI+HVRDLSSMLT AV P+AA N
Sbjct: 235 YMIGSGNNKDCEEWFFDRIVRDRAVPIPGSGLQLTNISHVRDLSSMLTSAVTNPDAACCN 294
Query: 48 IFNCVSDRAVTLDGMA 1
IFNCVSDRAVTLDGMA
Sbjct: 295 IFNCVSDRAVTLDGMA 310
>ref|XP_004290655.1| PREDICTED: chloroplast stem-loop binding protein of 41 kDa a,
chloroplastic-like [Fragaria vesca subsp. vesca]
Length = 404
Score = 422 bits (1086), Expect = e-116
Identities = 209/246 (84%), Positives = 223/246 (90%), Gaps = 3/246 (1%)
Frame = -2
Query: 729 PPSFAVRA---EKKNVLVVNTNSGGHAVIGFYFAKELLAAGHGVTILTVGEEGSDKMKKP 559
P SF+V+A +KK VL+VNTNSGGHAVIGFYFAKELL +GH VTILTVGEE SDKMKK
Sbjct: 65 PCSFSVKAIAADKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTILTVGEESSDKMKKT 124
Query: 558 PFNRFSEIVSGGGKTVWGEPADIGKVLEGATFDVVLDNNGKDLDTVRPVADCAKSSGVKQ 379
PF RFSEIV GGKTVWGEPA+I KVLEG+ FDVVLDNNGKDLD V+PVAD AKSSGVKQ
Sbjct: 125 PFTRFSEIVGAGGKTVWGEPAEIAKVLEGSAFDVVLDNNGKDLDAVKPVADWAKSSGVKQ 184
Query: 378 FLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEKYISETFGNWASFRPQYMIGSGNNKD 199
FLFISSAGIYKPTDEPPHVEGD VKADAGHV VEKY++E F +WASFRPQYMIGSGNNKD
Sbjct: 185 FLFISSAGIYKPTDEPPHVEGDVVKADAGHVAVEKYMAEVFSSWASFRPQYMIGSGNNKD 244
Query: 198 CEEWFFDRIVRGRPVLIPGSGMQLTNIAHVRDLSSMLTLAVEKPEAASGNIFNCVSDRAV 19
CEEWFFDRIVR RPV IPGSGMQLT I+HVRDLSSMLTLAVEKP+AASGNIFNCVSDRAV
Sbjct: 245 CEEWFFDRIVRDRPVPIPGSGMQLTVISHVRDLSSMLTLAVEKPDAASGNIFNCVSDRAV 304
Query: 18 TLDGMA 1
TLDG+A
Sbjct: 305 TLDGLA 310
>ref|NP_191873.1| chloroplast stem-loop binding protein-41 [Arabidopsis thaliana]
gi|75311698|sp|Q9LYA9.1|CP41A_ARATH RecName:
Full=Chloroplast stem-loop binding protein of 41 kDa a,
chloroplastic; Short=CSP41-a; Flags: Precursor
gi|16226201|gb|AAL16101.1|AF428269_1
AT3g63140/T20O10_240 [Arabidopsis thaliana]
gi|7573443|emb|CAB87759.1| mRNA binding protein
precursor-like [Arabidopsis thaliana]
gi|16649035|gb|AAL24369.1| mRNA binding protein
precursor-like [Arabidopsis thaliana]
gi|22136252|gb|AAM91204.1| mRNA binding protein
precursor-like [Arabidopsis thaliana]
gi|332646919|gb|AEE80440.1| chloroplast stem-loop
binding protein-41 [Arabidopsis thaliana]
Length = 406
Score = 422 bits (1085), Expect = e-116
Identities = 208/247 (84%), Positives = 222/247 (89%), Gaps = 4/247 (1%)
Frame = -2
Query: 729 PPSFAVRA----EKKNVLVVNTNSGGHAVIGFYFAKELLAAGHGVTILTVGEEGSDKMKK 562
P F V+A EKKNVL+VNTNSGGHAVIGFYFAKELL+AGH VTILTVG+E S+KMKK
Sbjct: 66 PQKFTVKASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTILTVGDESSEKMKK 125
Query: 561 PPFNRFSEIVSGGGKTVWGEPADIGKVLEGATFDVVLDNNGKDLDTVRPVADCAKSSGVK 382
PPFNRFSEIVSGGGKTVWG PA++ V+ G TFDVVLDNNGKDLDTVRPV D AKSSGVK
Sbjct: 126 PPFNRFSEIVSGGGKTVWGNPANVANVVGGETFDVVLDNNGKDLDTVRPVVDWAKSSGVK 185
Query: 381 QFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEKYISETFGNWASFRPQYMIGSGNNK 202
QFLFISSAGIYK T++PPHVEGD VKADAGHV VEKY++ETFGNWASFRPQYMIGSGNNK
Sbjct: 186 QFLFISSAGIYKSTEQPPHVEGDAVKADAGHVVVEKYLAETFGNWASFRPQYMIGSGNNK 245
Query: 201 DCEEWFFDRIVRGRPVLIPGSGMQLTNIAHVRDLSSMLTLAVEKPEAASGNIFNCVSDRA 22
DCEEWFFDRIVR R V IPGSG+QLTNI+HVRDLSSMLT AV PEAASGNIFNCVSDRA
Sbjct: 246 DCEEWFFDRIVRDRAVPIPGSGLQLTNISHVRDLSSMLTSAVANPEAASGNIFNCVSDRA 305
Query: 21 VTLDGMA 1
VTLDGMA
Sbjct: 306 VTLDGMA 312
>ref|XP_006349675.1| PREDICTED: chloroplast stem-loop binding protein of 41 kDa a,
chloroplastic-like [Solanum tuberosum]
Length = 401
Score = 422 bits (1085), Expect = e-116
Identities = 209/256 (81%), Positives = 225/256 (87%), Gaps = 4/256 (1%)
Frame = -2
Query: 756 SPRRAVSSFPPSFAVRA----EKKNVLVVNTNSGGHAVIGFYFAKELLAAGHGVTILTVG 589
S R + +S+ + V+A EKK VL+VNTNSGGHAVIGFYFAKELL +GH VT+LTVG
Sbjct: 52 SRRVSPNSYSSTTVVQASGAVEKKKVLIVNTNSGGHAVIGFYFAKELLGSGHDVTVLTVG 111
Query: 588 EEGSDKMKKPPFNRFSEIVSGGGKTVWGEPADIGKVLEGATFDVVLDNNGKDLDTVRPVA 409
EE SDKMKK PF RFSEI GG+TVWG PAD+GK+LEG FD VLDNNGKDLD+V PVA
Sbjct: 112 EESSDKMKKTPFTRFSEITGAGGRTVWGNPADVGKILEGEVFDAVLDNNGKDLDSVSPVA 171
Query: 408 DCAKSSGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEKYISETFGNWASFRPQ 229
D AKSSGVKQFLFISSAGIYKPTDEPPHVEGD VKADAGHV VEKYISE FG+WASFRPQ
Sbjct: 172 DWAKSSGVKQFLFISSAGIYKPTDEPPHVEGDAVKADAGHVLVEKYISEIFGSWASFRPQ 231
Query: 228 YMIGSGNNKDCEEWFFDRIVRGRPVLIPGSGMQLTNIAHVRDLSSMLTLAVEKPEAASGN 49
YMIGSGNNKDCEEWFFDRIVRGRPVLIPGSGMQLTNI+HVRDLSSMLTLAV+ P AASG+
Sbjct: 232 YMIGSGNNKDCEEWFFDRIVRGRPVLIPGSGMQLTNISHVRDLSSMLTLAVQNPAAASGH 291
Query: 48 IFNCVSDRAVTLDGMA 1
IFNCVSDRAVTLDGMA
Sbjct: 292 IFNCVSDRAVTLDGMA 307
>ref|NP_001234656.1| mRNA binding protein precursor [Solanum lycopersicum]
gi|26453355|gb|AAD21574.3| mRNA binding protein
precursor [Solanum lycopersicum]
Length = 407
Score = 422 bits (1084), Expect = e-115
Identities = 207/252 (82%), Positives = 220/252 (87%)
Frame = -2
Query: 756 SPRRAVSSFPPSFAVRAEKKNVLVVNTNSGGHAVIGFYFAKELLAAGHGVTILTVGEEGS 577
SP+ S+ + EKK VL+VNTNSGGHAVIGFYFAKELL +GH VT+LTVGEE S
Sbjct: 62 SPKSYSSTSVVQASGAVEKKKVLIVNTNSGGHAVIGFYFAKELLGSGHDVTVLTVGEESS 121
Query: 576 DKMKKPPFNRFSEIVSGGGKTVWGEPADIGKVLEGATFDVVLDNNGKDLDTVRPVADCAK 397
DKMKK PF RFSEI GG+TVWG PAD+GK+LEG FD VLDNNGKDLD+V PVAD AK
Sbjct: 122 DKMKKTPFTRFSEITGAGGRTVWGNPADVGKILEGEVFDAVLDNNGKDLDSVSPVADWAK 181
Query: 396 SSGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEKYISETFGNWASFRPQYMIG 217
SSGVKQFLFISSAGIYKPTDEPPHVEGD VKADAGHV VEKYISE FG+WASFRPQYMIG
Sbjct: 182 SSGVKQFLFISSAGIYKPTDEPPHVEGDAVKADAGHVLVEKYISEIFGSWASFRPQYMIG 241
Query: 216 SGNNKDCEEWFFDRIVRGRPVLIPGSGMQLTNIAHVRDLSSMLTLAVEKPEAASGNIFNC 37
SGNNKDCEEWFFDRIVRGRPVLIPGSGMQLTNI+HVRDLSSMLTLAV+ P AASG IFNC
Sbjct: 242 SGNNKDCEEWFFDRIVRGRPVLIPGSGMQLTNISHVRDLSSMLTLAVQNPAAASGRIFNC 301
Query: 36 VSDRAVTLDGMA 1
VSDRAVTLDGMA
Sbjct: 302 VSDRAVTLDGMA 313
>gb|AAP87140.1| mRNA-binding protein precursor, partial [Nicotiana tabacum]
Length = 405
Score = 421 bits (1083), Expect = e-115
Identities = 205/239 (85%), Positives = 215/239 (89%)
Frame = -2
Query: 717 AVRAEKKNVLVVNTNSGGHAVIGFYFAKELLAAGHGVTILTVGEEGSDKMKKPPFNRFSE 538
A AEKK VL+VNTNSGGHAVIGFYFAKELL +GH VTILTVGEE SDKMKK PFNRFSE
Sbjct: 73 ASAAEKKKVLIVNTNSGGHAVIGFYFAKELLGSGHDVTILTVGEESSDKMKKTPFNRFSE 132
Query: 537 IVSGGGKTVWGEPADIGKVLEGATFDVVLDNNGKDLDTVRPVADCAKSSGVKQFLFISSA 358
I GG+T+WG+PAD+GK+LEG FD VLDNNGKDLD VRPVAD AKSSG KQFLFISSA
Sbjct: 133 ITGAGGRTIWGDPADVGKILEGEVFDAVLDNNGKDLDAVRPVADWAKSSGAKQFLFISSA 192
Query: 357 GIYKPTDEPPHVEGDTVKADAGHVGVEKYISETFGNWASFRPQYMIGSGNNKDCEEWFFD 178
GIYK TDEPPHVEGD VKADAGHVGVEKYISE F +WASFRPQYMIGSGNNKDCEEWFFD
Sbjct: 193 GIYKSTDEPPHVEGDAVKADAGHVGVEKYISEIFDSWASFRPQYMIGSGNNKDCEEWFFD 252
Query: 177 RIVRGRPVLIPGSGMQLTNIAHVRDLSSMLTLAVEKPEAASGNIFNCVSDRAVTLDGMA 1
RIVRGRPV IPGSGMQLTNIAHVRDLSSMLT AV+ P AASG+IFNCVSDRAVTLDGMA
Sbjct: 253 RIVRGRPVPIPGSGMQLTNIAHVRDLSSMLTAAVQNPAAASGHIFNCVSDRAVTLDGMA 311
>ref|XP_006402306.1| hypothetical protein EUTSA_v10006498mg [Eutrema salsugineum]
gi|557103405|gb|ESQ43759.1| hypothetical protein
EUTSA_v10006498mg [Eutrema salsugineum]
Length = 402
Score = 421 bits (1082), Expect = e-115
Identities = 207/252 (82%), Positives = 220/252 (87%)
Frame = -2
Query: 756 SPRRAVSSFPPSFAVRAEKKNVLVVNTNSGGHAVIGFYFAKELLAAGHGVTILTVGEEGS 577
S R + S P F V+A KKNVL+VNTNSGGHAVIGFYFAKELL+AGH VTI TVG+E S
Sbjct: 57 SLRSSRRSSPQRFTVKAHKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTIFTVGDESS 116
Query: 576 DKMKKPPFNRFSEIVSGGGKTVWGEPADIGKVLEGATFDVVLDNNGKDLDTVRPVADCAK 397
DKM KPPF+RFSEIVSGGGKTVWG PAD+ V+ TFDVVLDNNGKDLDTVRPV D AK
Sbjct: 117 DKMNKPPFSRFSEIVSGGGKTVWGNPADVANVVGSETFDVVLDNNGKDLDTVRPVVDWAK 176
Query: 396 SSGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEKYISETFGNWASFRPQYMIG 217
SSG KQFLFISSAGIYK T+EPPHVEGD VKADAGHVGVEKY++ETFGNWASFRPQYMIG
Sbjct: 177 SSGAKQFLFISSAGIYKSTEEPPHVEGDAVKADAGHVGVEKYLAETFGNWASFRPQYMIG 236
Query: 216 SGNNKDCEEWFFDRIVRGRPVLIPGSGMQLTNIAHVRDLSSMLTLAVEKPEAASGNIFNC 37
SGNNKDCEEWFFDRIVR R V IPGSG+QLTNI+HVRDLSSMLT AV PEAA NIFNC
Sbjct: 237 SGNNKDCEEWFFDRIVRDRAVPIPGSGLQLTNISHVRDLSSMLTSAVHNPEAACCNIFNC 296
Query: 36 VSDRAVTLDGMA 1
VSDRAVTLDGMA
Sbjct: 297 VSDRAVTLDGMA 308
>ref|XP_004955807.1| PREDICTED: chloroplast stem-loop binding protein of 41 kDa a,
chloroplastic-like [Setaria italica]
Length = 397
Score = 420 bits (1079), Expect = e-115
Identities = 205/251 (81%), Positives = 224/251 (89%), Gaps = 1/251 (0%)
Frame = -2
Query: 750 RRAVSSFPPSFAVRAE-KKNVLVVNTNSGGHAVIGFYFAKELLAAGHGVTILTVGEEGSD 574
RRA + + +VRAE KK+VL+VNTNSGGHAVIGFYFAKELLAAGH VT+LTVG+EGSD
Sbjct: 50 RRAAPAARAAVSVRAEAKKSVLIVNTNSGGHAVIGFYFAKELLAAGHAVTVLTVGDEGSD 109
Query: 573 KMKKPPFNRFSEIVSGGGKTVWGEPADIGKVLEGATFDVVLDNNGKDLDTVRPVADCAKS 394
KMKKPPF+RFSE+ GGKTVWG+PAD+G + GA+FDVVLDNNGKDLD V+PVAD AK+
Sbjct: 110 KMKKPPFSRFSELTGAGGKTVWGDPADVGAAVSGASFDVVLDNNGKDLDAVKPVADWAKA 169
Query: 393 SGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEKYISETFGNWASFRPQYMIGS 214
SGV QFLFISSAGIYKPTDEPPHVEGD VK AGHVGVEKYI+E F +WASFRPQYMIGS
Sbjct: 170 SGVGQFLFISSAGIYKPTDEPPHVEGDAVKESAGHVGVEKYIAEQFSSWASFRPQYMIGS 229
Query: 213 GNNKDCEEWFFDRIVRGRPVLIPGSGMQLTNIAHVRDLSSMLTLAVEKPEAASGNIFNCV 34
GNNKDCEEWFFDRIVRGRPV IPG+GMQLTNIAHVRDLSSML LAVE P AA+G IFNCV
Sbjct: 230 GNNKDCEEWFFDRIVRGRPVPIPGNGMQLTNIAHVRDLSSMLALAVENPGAAAGKIFNCV 289
Query: 33 SDRAVTLDGMA 1
SDRAVTLDGMA
Sbjct: 290 SDRAVTLDGMA 300
>ref|XP_003518924.1| PREDICTED: chloroplast stem-loop binding protein of 41 kDa a,
chloroplastic-like [Glycine max]
Length = 403
Score = 420 bits (1079), Expect = e-115
Identities = 204/239 (85%), Positives = 217/239 (90%)
Frame = -2
Query: 717 AVRAEKKNVLVVNTNSGGHAVIGFYFAKELLAAGHGVTILTVGEEGSDKMKKPPFNRFSE 538
A AEKK VL+VNTNSGGHA+IGFYFAKELL AGH VTILTVGEEGSDKMKKPPFNRFSE
Sbjct: 71 ASAAEKKKVLIVNTNSGGHAIIGFYFAKELLGAGHSVTILTVGEEGSDKMKKPPFNRFSE 130
Query: 537 IVSGGGKTVWGEPADIGKVLEGATFDVVLDNNGKDLDTVRPVADCAKSSGVKQFLFISSA 358
IVS GG+TVWG PA++G V+ G FDVVLDNNGKDL+TVRPV D AKSSGVKQFLF+SSA
Sbjct: 131 IVSAGGRTVWGNPAEVGSVVGGEVFDVVLDNNGKDLETVRPVIDWAKSSGVKQFLFVSSA 190
Query: 357 GIYKPTDEPPHVEGDTVKADAGHVGVEKYISETFGNWASFRPQYMIGSGNNKDCEEWFFD 178
GIYKPTDEPPHVEGD VKADAGHV VEKYI ETFG+WA FRPQYMIGSGNNKDCEEWFFD
Sbjct: 191 GIYKPTDEPPHVEGDVVKADAGHVEVEKYIEETFGSWAVFRPQYMIGSGNNKDCEEWFFD 250
Query: 177 RIVRGRPVLIPGSGMQLTNIAHVRDLSSMLTLAVEKPEAASGNIFNCVSDRAVTLDGMA 1
RIVR RPV IPGSG+QL+NIAHVRDLSSMLTLAVE PEAA+ IFNCVSDRAVTLDG+A
Sbjct: 251 RIVRDRPVPIPGSGLQLSNIAHVRDLSSMLTLAVENPEAANQTIFNCVSDRAVTLDGIA 309
>ref|XP_006444077.1| hypothetical protein CICLE_v10020449mg [Citrus clementina]
gi|568852108|ref|XP_006479722.1| PREDICTED: chloroplast
stem-loop binding protein of 41 kDa a,
chloroplastic-like [Citrus sinensis]
gi|557546339|gb|ESR57317.1| hypothetical protein
CICLE_v10020449mg [Citrus clementina]
Length = 401
Score = 419 bits (1078), Expect = e-115
Identities = 210/254 (82%), Positives = 222/254 (87%)
Frame = -2
Query: 762 AKSPRRAVSSFPPSFAVRAEKKNVLVVNTNSGGHAVIGFYFAKELLAAGHGVTILTVGEE 583
A S R +VS+F A AEKK VL+VNTNSGGHAVIGFY AKELL +GH VTI+TVG+E
Sbjct: 55 ASSRRSSVSAFTVK-ASAAEKKKVLIVNTNSGGHAVIGFYLAKELLGSGHEVTIMTVGDE 113
Query: 582 GSDKMKKPPFNRFSEIVSGGGKTVWGEPADIGKVLEGATFDVVLDNNGKDLDTVRPVADC 403
SDKMKKPPFNRF+EIVS GGKTVWG+PA++G V+ G TFDVVLDNNGK+LD VRPVAD
Sbjct: 114 NSDKMKKPPFNRFNEIVSAGGKTVWGDPAEVGNVVGGVTFDVVLDNNGKNLDAVRPVADW 173
Query: 402 AKSSGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEKYISETFGNWASFRPQYM 223
AKSSGVKQFLFISSAGIYKP DEPPHVEGD VK DAGHV VEKYISE F NWASFRPQYM
Sbjct: 174 AKSSGVKQFLFISSAGIYKPADEPPHVEGDVVKPDAGHVQVEKYISENFSNWASFRPQYM 233
Query: 222 IGSGNNKDCEEWFFDRIVRGRPVLIPGSGMQLTNIAHVRDLSSMLTLAVEKPEAASGNIF 43
IGSGNNKDCEEWFFDRIVR RPV IPGSGMQ TNIAHVRDLSSMLTLAVE PEAAS NIF
Sbjct: 234 IGSGNNKDCEEWFFDRIVRKRPVPIPGSGMQFTNIAHVRDLSSMLTLAVENPEAASSNIF 293
Query: 42 NCVSDRAVTLDGMA 1
N VSDRAVTLDGMA
Sbjct: 294 NLVSDRAVTLDGMA 307
>gb|EOX94778.1| Chloroplast stem-loop binding protein of 41 kDa isoform 2
[Theobroma cacao]
Length = 393
Score = 418 bits (1074), Expect = e-114
Identities = 209/246 (84%), Positives = 220/246 (89%), Gaps = 3/246 (1%)
Frame = -2
Query: 729 PPSFAVRA---EKKNVLVVNTNSGGHAVIGFYFAKELLAAGHGVTILTVGEEGSDKMKKP 559
P SF V+A EKK VL+VNTNSGGHAVIGFYFAKELL +GH VTILTVG+EGSDKMKKP
Sbjct: 61 PSSFTVKASGGEKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTILTVGDEGSDKMKKP 120
Query: 558 PFNRFSEIVSGGGKTVWGEPADIGKVLEGATFDVVLDNNGKDLDTVRPVADCAKSSGVKQ 379
PFNRFSEIVS GGKTVWG+PAD+GKV+ GATFDVVLDNNGKDLDTVRPV D AKSSGV Q
Sbjct: 121 PFNRFSEIVSAGGKTVWGDPADVGKVVAGATFDVVLDNNGKDLDTVRPVIDWAKSSGVDQ 180
Query: 378 FLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEKYISETFGNWASFRPQYMIGSGNNKD 199
FL+ISSAGIYKPTDEPPHVEGD VKADAGHVGVEKYI+E F +WA FRPQYMIGSGNNKD
Sbjct: 181 FLYISSAGIYKPTDEPPHVEGDVVKADAGHVGVEKYIAEIFSSWAIFRPQYMIGSGNNKD 240
Query: 198 CEEWFFDRIVRGRPVLIPGSGMQLTNIAHVRDLSSMLTLAVEKPEAASGNIFNCVSDRAV 19
CEEWFFD + IPGSGMQLTNIAHVRDLSSMLTLAVEKPEAAS NIFNCVSDRAV
Sbjct: 241 CEEWFFD-------LPIPGSGMQLTNIAHVRDLSSMLTLAVEKPEAASSNIFNCVSDRAV 293
Query: 18 TLDGMA 1
TLDGMA
Sbjct: 294 TLDGMA 299
>ref|XP_003536518.1| PREDICTED: chloroplast stem-loop binding protein of 41 kDa a,
chloroplastic-like [Glycine max]
Length = 404
Score = 416 bits (1069), Expect = e-114
Identities = 203/239 (84%), Positives = 215/239 (89%)
Frame = -2
Query: 717 AVRAEKKNVLVVNTNSGGHAVIGFYFAKELLAAGHGVTILTVGEEGSDKMKKPPFNRFSE 538
A AEKK VL+VNTNSGGHA+IGFYFAKELL AGH VTILTVG+EGSDKMKKPPFNRFSE
Sbjct: 72 ASAAEKKKVLIVNTNSGGHAIIGFYFAKELLGAGHSVTILTVGDEGSDKMKKPPFNRFSE 131
Query: 537 IVSGGGKTVWGEPADIGKVLEGATFDVVLDNNGKDLDTVRPVADCAKSSGVKQFLFISSA 358
IVS GG+TVWG PA +G V+ G FDVVLDNNGKDL TVRPV D AKSSGVKQFLFISSA
Sbjct: 132 IVSAGGRTVWGNPAQVGSVVGGEVFDVVLDNNGKDLGTVRPVIDWAKSSGVKQFLFISSA 191
Query: 357 GIYKPTDEPPHVEGDTVKADAGHVGVEKYISETFGNWASFRPQYMIGSGNNKDCEEWFFD 178
GIYKPTDEPPHVEGD VKADAGHV VEKYI ET+G+WA FRPQYMIGSGNNKDCEEWFFD
Sbjct: 192 GIYKPTDEPPHVEGDVVKADAGHVEVEKYIEETYGSWAVFRPQYMIGSGNNKDCEEWFFD 251
Query: 177 RIVRGRPVLIPGSGMQLTNIAHVRDLSSMLTLAVEKPEAASGNIFNCVSDRAVTLDGMA 1
RIVR RPV IPGSG+QL+NIAHVRDLSSMLTLAVE PEAA+ IFNCVSDRAVTLDG+A
Sbjct: 252 RIVRDRPVPIPGSGLQLSNIAHVRDLSSMLTLAVENPEAANQTIFNCVSDRAVTLDGIA 310