BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00001642
         (1174 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN66959.1| hypothetical protein VITISV_013138 [Vitis vinifera]   330   9e-88
emb|CAN66873.1| hypothetical protein VITISV_021427 [Vitis vinifera]   328   3e-87
emb|CAN78666.1| hypothetical protein VITISV_032507 [Vitis vinifera]   325   2e-86
ref|XP_002263348.2| PREDICTED: wall-associated receptor kinase 2...   289   1e-75
emb|CAN68340.1| hypothetical protein VITISV_025981 [Vitis vinifera]   289   2e-75
emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus]        266   1e-68
gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]          257   7e-66
ref|XP_003635668.1| PREDICTED: uncharacterized protein LOC100854...   253   1e-64
emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]   251   4e-64
emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]   251   5e-64
ref|XP_003631792.1| PREDICTED: uncharacterized protein LOC100252...   249   1e-63
gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo s...   247   6e-63
gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Zea ...   239   2e-60
emb|CAN69855.1| hypothetical protein VITISV_041230 [Vitis vinifera]   232   3e-58
gb|AAM95676.1| putative polyprotein [Oryza sativa Japonica Group]     217   8e-54
gb|ABA97124.1| retrotransposon protein, putative, Ty1-copia subc...   216   1e-53
gb|ABA98084.1| retrotransposon protein, putative, Ty1-copia subc...   216   2e-53
gb|AAP54028.1| retrotransposon protein, putative, Ty1-copia subc...   216   2e-53
gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]     216   2e-53
gb|AAS07202.1| putative integrase [Oryza sativa Japonica Group] ...   216   2e-53

>emb|CAN66959.1| hypothetical protein VITISV_013138 [Vitis vinifera]
          Length = 1234

 Score =  330 bits (845), Expect = 9e-88
 Identities = 181/395 (45%), Positives = 240/395 (60%), Gaps = 14/395 (3%)
 Frame = +1

Query: 1    VAYVLNPDLPEIPPPKDGESDEVKKQREKRQEDEVMCRGHILNTLSDTLYDLFTAVKSPR 180
            + Y+L+P L  +P PK+ ++ +V   R+KR+EDE++CRGHILN LSD LYDL+T   S R
Sbjct: 40   IFYILDPTLAPLPEPKENDTPQVVAARKKREEDELICRGHILNALSDRLYDLYTNTNSAR 99

Query: 181  EIWATLEREYASQKQGADKFLIKKYFEFKLDDSSSLMDQIHNLQVIVSKLKDYGVEISES 360
            EIW  LE +Y ++++G  KFLI +Y +FK  D   L+ QIH LQVIV+KLK   +E+ E+
Sbjct: 100  EIWEALENKYKAEEEGTKKFLISQYIDFKFFDEKPLLPQIHELQVIVNKLKVLKIELPEA 159

Query: 361  MQVGAIIAKLPSSWNDYQKKLLHTSEILTISSVLKHLRIEEGARILHKKEFDSDPRVNMV 540
             QVGAI+AKLPSSW  Y+K++LH SE  ++  + KHLRIEE +R   K   +S+   N  
Sbjct: 160  FQVGAIVAKLPSSWKGYRKRILHKSEDYSLEEIQKHLRIEEESRSRDKMVEESNGGTNKA 219

Query: 541  H--------EKKFKNKRKNSEN-----ADSEDKKKKNRVCYNCGKKGHYKAECXXXXXXX 681
            +          K  N +KNS N      + E  K K   C+ CGK GHY  EC       
Sbjct: 220  NAISKANHPRGKNNNNKKNSGNYMSPKKNQEQFKGKKGXCFVCGKPGHYARECRFRKDQK 279

Query: 682  XXXXXXXXXXLVEDATEIIAMLSLGTVTELHLATPTSSKDWWYDSGAAIHVCNDKEQFKN 861
                            EIIA LS   V +         + WWYD+ A +HV  DK  FK 
Sbjct: 280  GAVVNAID-------EEIIATLSDVCVVQ------GKVQGWWYDTCATVHVTYDKSLFKT 326

Query: 862  YEILDG-QQVVMANGVRAKVLGRGDVHLDFTSGKKMVLTNVLHVPDVVKNLVSADILNKK 1038
            +E   G Q+V M N  ++KVLG+G + + FTSGKK+ LTNVL+VPD+ KNLVS D+L K 
Sbjct: 327  FEDAKGBQEVQMGNEGKSKVLGKGTIEVVFTSGKKVTLTNVLYVPDMNKNLVSGDLLGKP 386

Query: 1039 GLKAVLESNNVILSKNGVFVGKGYSCNGLFKLSIN 1143
            G+KAV ES  +ILSK+G FVGKGYSC+G+ KL  N
Sbjct: 387  GIKAVFESGKLILSKSGNFVGKGYSCDGMIKLCTN 421


>emb|CAN66873.1| hypothetical protein VITISV_021427 [Vitis vinifera]
          Length = 1473

 Score =  328 bits (840), Expect = 3e-87
 Identities = 183/405 (45%), Positives = 245/405 (60%), Gaps = 18/405 (4%)
 Frame = +1

Query: 1    VAYVLNPDLPEIPPPKDGESDEVKKQREKRQEDEVMCRGHILNTLSDTLYDLFTAVKSPR 180
            + Y+L+P L  +P PK+ ++ +V   R+KR+EDE++CRGHILN LSD LYDL+T   S R
Sbjct: 40   IFYILDPTLXPLPEPKENDTPQVVAARKKREEDELICRGHILNALSDRLYDLYTNTXSAR 99

Query: 181  EIWATLEREYASQKQGADKFLIKKYFEFKLDDSSSLMDQIHNLQVIVSKLKDYGVEISES 360
            EIW  LE +Y ++++G  KFLI +Y +FK  D   L+ QIH LQVIV+KLK   +E+ E+
Sbjct: 100  EIWEALENKYKAEEEGTKKFLISQYIDFKFFDEKPLLPQIHELQVIVNKLKVLKIELPEA 159

Query: 361  MQVGAIIAKLPSSWNDYQKKLLHTSEILTISSVLKHLRIEEGARILHKKEFDSDPRVNMV 540
             QVGAI+AKLPSSW  Y+K++LH SE  ++  + KHLRIEE +R   K   +S+   N  
Sbjct: 160  FQVGAIVAKLPSSWKGYRKRILHKSEDYSLEEIQKHLRIEEESRSRDKMVEESNGGTNKA 219

Query: 541  H--------EKKFKNKRKNSEN-----ADSEDKKKKNRVCYNCGKKGHYKAECXXXXXXX 681
            +          K  N +KNS N      + E  K K   C+ CGK GHY  EC       
Sbjct: 220  NAISKANHPRGKNNNNKKNSGNYMSPKKNQEQFKGKKGPCFVCGKPGHYARECRFRKDQK 279

Query: 682  XXXXXXXXXXLVEDATEIIAMLSLGTVTELHLATPTSSKDWWYDSGAAIHVCNDKEQFKN 861
                            EIIA LS   V +         + WWYD+ A +HV  DK  FK 
Sbjct: 280  GAVVNAID-------EEIIATLSDVCVVQ------GKVQGWWYDTCATVHVTYDKSLFKT 326

Query: 862  YEILDG-QQVVMANGVRAKVLGRGDVHLDFTSGKKMVLTNVLHVPDVVKNLVSADILNKK 1038
            +E   G Q+V M N  ++KVLG+G + + FTSGKK+ L NVL+VPD+ KNLVS D+L K 
Sbjct: 327  FEDAKGDQEVQMGNEGKSKVLGKGTIEVVFTSGKKVTLKNVLYVPDMNKNLVSGDLLGKP 386

Query: 1039 GLKAVLESNNVILSKNGVFVGKGYSCNGLFKLS----INKVNNVS 1161
            G+KAV ES  +IL+K+G FVGKGYSC+G+ KLS    INK+ + S
Sbjct: 387  GIKAVFESGKLILTKSGNFVGKGYSCDGMIKLSTNDNINKMTSTS 431


>emb|CAN78666.1| hypothetical protein VITISV_032507 [Vitis vinifera]
          Length = 804

 Score =  325 bits (834), Expect = 2e-86
 Identities = 179/395 (45%), Positives = 239/395 (60%), Gaps = 14/395 (3%)
 Frame = +1

Query: 1    VAYVLNPDLPEIPPPKDGESDEVKKQREKRQEDEVMCRGHILNTLSDTLYDLFTAVKSPR 180
            + Y+L+P L  +P PK+ ++ +V   R+KR+EDE++CRGHILN LSD LYDL+T   S R
Sbjct: 40   IFYILDPTLAPLPEPKENDTPQVVAARKKREEDELICRGHILNALSDRLYDLYTNTNSAR 99

Query: 181  EIWATLEREYASQKQGADKFLIKKYFEFKLDDSSSLMDQIHNLQVIVSKLKDYGVEISES 360
            EIW  LE +Y ++++G  KFLI +Y +FK  D   L+ QIH LQVIV+KLK   +E+ E+
Sbjct: 100  EIWEALENKYKAEEEGTKKFLISQYIDFKFFDEKPLLPQIHELQVIVNKLKVLKIELPEA 159

Query: 361  MQVGAIIAKLPSSWNDYQKKLLHTSEILTISSVLKHLRIEEGARILHKKEFDSDPRVNMV 540
             QVGAI+AKLPSSW  Y+K++LH SE  ++  + KHLRI+E +R   K   +S+   N  
Sbjct: 160  FQVGAIVAKLPSSWKGYRKRILHKSEDYSLEEIQKHLRIKEESRSRDKMVEESNGGTNKA 219

Query: 541  H--------EKKFKNKRKNSEN-----ADSEDKKKKNRVCYNCGKKGHYKAECXXXXXXX 681
            +          K  N +KNS N      + E  K K   C+ CGK GHY  EC       
Sbjct: 220  NAISKANHPRGKNNNNKKNSGNYMSPKKNQEQFKGKKGPCFVCGKPGHYARECRFRKDQK 279

Query: 682  XXXXXXXXXXLVEDATEIIAMLSLGTVTELHLATPTSSKDWWYDSGAAIHVCNDKEQFKN 861
                            EIIA LS   V +         + WWYD+ A +HV  DK  FK 
Sbjct: 280  GVVVNAID-------EEIIATLSDVCVVQ------GKVQGWWYDTCATVHVTYDKSLFKT 326

Query: 862  YEILDG-QQVVMANGVRAKVLGRGDVHLDFTSGKKMVLTNVLHVPDVVKNLVSADILNKK 1038
            +E   G Q+V M N  ++KVLG+G + + FTSGKK+ L NVL+VPD+ KNLVS D+L K 
Sbjct: 327  FEDAKGDQEVQMGNEGKSKVLGKGTIEVVFTSGKKVTLKNVLYVPDMNKNLVSGDLLGKP 386

Query: 1039 GLKAVLESNNVILSKNGVFVGKGYSCNGLFKLSIN 1143
            G+KAV ES  +IL K+G FVGKGYSC+G+ KLS N
Sbjct: 387  GIKAVFESGKLILXKSGNFVGKGYSCDGMIKLSTN 421


>ref|XP_002263348.2| PREDICTED: wall-associated receptor kinase 2-like [Vitis vinifera]
          Length = 1182

 Score =  289 bits (740), Expect = 1e-75
 Identities = 164/377 (43%), Positives = 219/377 (58%), Gaps = 14/377 (3%)
 Frame = +1

Query: 1    VAYVLNPDLPEIPPPKDGESDEVKKQREKRQEDEVMCRGHILNTLSDTLYDLFTAVKSPR 180
            + Y+L+P L  +P PK+ ++ +V   R+KR+EDE++CRGHILN LSD LYDL+T   S R
Sbjct: 32   IFYILDPTLAPLPEPKENDTPQVVAARKKREEDELICRGHILNALSDRLYDLYTNTYSAR 91

Query: 181  EIWATLEREYASQKQGADKFLIKKYFEFKLDDSSSLMDQIHNLQVIVSKLKDYGVEISES 360
            EIW  LE +Y ++++G  KFLI +Y +FK  D   L+ QIH LQVIV+KLK   +E+ E+
Sbjct: 92   EIWEALENKYKAEEEGTKKFLISQYIDFKFFDEKPLLPQIHELQVIVNKLKVLKIELPEA 151

Query: 361  MQVGAIIAKLPSSWNDYQKKLLHTSEILTISSVLKHLRIEEGARILHKKEFDSDPRVNMV 540
             QVGAI+AKLPSSW  Y+K++LH SE  ++  + KHLRIEE  R   K   +S+   N  
Sbjct: 152  FQVGAIVAKLPSSWKGYRKRILHKSEDYSLEEIQKHLRIEEELRSRDKMAEESNGGTNKA 211

Query: 541  H--------EKKFKNKRKNSEN-----ADSEDKKKKNRVCYNCGKKGHYKAECXXXXXXX 681
            +          K  N ++NS N      + E  K K   C+ CGK GHY  EC       
Sbjct: 212  NAVSKANHPRGKNNNDKRNSGNYMSPKKNQEQFKGKKGPCFVCGKLGHYARECRYRKDLK 271

Query: 682  XXXXXXXXXXLVEDATEIIAMLSLGTVTELHLATPTSSKDWWYDSGAAIHVCNDKEQFKN 861
                            EIIA LS   V +         + WWYD+ A +HV  DK  FK 
Sbjct: 272  GVVVNAID-------EEIIATLSDVCVVQ------GKVQGWWYDTCATVHVTYDKSLFKT 318

Query: 862  YEILDG-QQVVMANGVRAKVLGRGDVHLDFTSGKKMVLTNVLHVPDVVKNLVSADILNKK 1038
            +E   G Q+V M N  R+KVLG+G + + FTSGKK+ L NVL+VPD+ KNLVS D+L K 
Sbjct: 319  FEDAKGDQEVQMGNEGRSKVLGKGTIEVVFTSGKKVTLINVLYVPDMNKNLVSGDLLGKP 378

Query: 1039 GLKAVLESNNVILSKNG 1089
            G+K V ES+      NG
Sbjct: 379  GIKGVFESDVKTAFLNG 395


>emb|CAN68340.1| hypothetical protein VITISV_025981 [Vitis vinifera]
          Length = 791

 Score =  289 bits (739), Expect = 2e-75
 Identities = 169/395 (42%), Positives = 225/395 (56%), Gaps = 14/395 (3%)
 Frame = +1

Query: 1    VAYVLNPDLPEIPPPKDGESDEVKKQREKRQEDEVMCRGHILNTLSDTLYDLFTAVKSPR 180
            + Y+L+P L  +P PK+ ++ +V   R+KR++DE++CRGHILN LSD LYDL+T   S R
Sbjct: 40   IFYILDPTLAPLPEPKENDTPQVVAARKKREKDELICRGHILNALSDRLYDLYTNTNSAR 99

Query: 181  EIWATLEREYASQKQGADKFLIKKYFEFKLDDSSSLMDQIHNLQVIVSKLKDYGVEISES 360
            EIW  LE +Y ++++G  +FLI +Y +FK  D   L+ QIH LQVIV+KLK   +E+ E+
Sbjct: 100  EIWEALENKYKAEEEGTKRFLISQYIDFKFVDEKPLLPQIHKLQVIVNKLKVLKIELPEA 159

Query: 361  MQVGAIIAKLPSSWNDYQKKLLHTSEILTISSVLKHLRIEEGARILHKKEFDSDPRVNMV 540
             QVGAI+ KLPSSW  Y+K++LH SE  ++  + KHLRIEE +R   K   +S+   N  
Sbjct: 160  FQVGAIVVKLPSSWKGYRKRILHKSEDYSLEEIQKHLRIEEESRSRDKMVEESNGGTNKA 219

Query: 541  -------HEK-KFKNKRKNSEN-----ADSEDKKKKNRVCYNCGKKGHYKAECXXXXXXX 681
                   H K K  N +KNS N      + E  K K  +C+ CGK GHY  EC       
Sbjct: 220  NAVSKANHPKGKNNNNKKNSGNYMSPKKNQEQFKGKKGLCFVCGKPGHYARECRYRKNQK 279

Query: 682  XXXXXXXXXXLVEDATEIIAMLSLGTVTELHLATPTSSKDWWYDSGAAIHVCNDKEQFKN 861
                            EIIA LS                           VC    Q K 
Sbjct: 280  GAVVNAID-------EEIIATLS--------------------------DVC--VVQGKT 304

Query: 862  YEILDG-QQVVMANGVRAKVLGRGDVHLDFTSGKKMVLTNVLHVPDVVKNLVSADILNKK 1038
            +E   G Q+V M N  R+KVLG+G + + FTSGK++ L NVL+VPD+ KNLVS D+L K 
Sbjct: 305  FEDAKGDQEVQMGNEGRSKVLGKGTIEVAFTSGKRVTLINVLYVPDMNKNLVSGDLLGKP 364

Query: 1039 GLKAVLESNNVILSKNGVFVGKGYSCNGLFKLSIN 1143
              KAV ES  +ILSK+G FVG GYSC+G+ KL  N
Sbjct: 365  SFKAVFESGKLILSKSGNFVGNGYSCDGMIKLCTN 399


>emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus]
          Length = 1358

 Score =  266 bits (680), Expect = 1e-68
 Identities = 151/402 (37%), Positives = 227/402 (56%), Gaps = 24/402 (5%)
 Frame = +1

Query: 7    YVLNPDLPEIPPPKDGESDEVK-----KQREKRQEDEVMCRGHILNTLSDTLYDLFTAVK 171
            Y+L+PDLP IP    GE+ E+      +QR  R+E E +C GHI N+LSD LYDL+  +K
Sbjct: 34   YILDPDLPAIPDDPPGEAGELPNEDLARQRLIRKEAEDLCLGHIKNSLSDRLYDLYAPIK 93

Query: 172  SPREIWATLEREYASQKQGADKFLIKKYFEFKLDDSSSLMDQIHNLQVIVSKLKDYGVEI 351
            S RE+W  LE +Y + ++G +K+LI KY +F++ D  S+++Q+H LQV+V+KL    + +
Sbjct: 94   SARELWKALEDKYKAHEEGTNKYLIAKYLDFQMVDDKSILEQVHELQVLVNKLTALSIPL 153

Query: 352  SESMQVGAIIAKLPSSWNDYQKKLLHTSEILTISSVLKHLRIEEGARILHKKEFDSDPRV 531
             E  QVG IIAKLP  W D+ K+++H SE  ++  +LKHLRIEE  R   K+       V
Sbjct: 154  PEIFQVGVIIAKLPPGWKDFSKRMMHKSEDYSLDELLKHLRIEEETRNRDKRG-KVGSSV 212

Query: 532  NMV-------------HEKKF----KNKRKNSENADSEDKKKKNRVCYNCGKKGHYKAEC 660
            N V               KKF    K + K S++ ++   K+  + C+ CG+ GHY  EC
Sbjct: 213  NHVAGGSGQKGKGASSRNKKFTAPKKKEFKKSQHTNNHQPKRSGK-CHVCGETGHYAREC 271

Query: 661  XXXXXXXXXXXXXXXXXLVEDATEIIAMLSLGTVTELHLATP-TSSKDWWYDSGAAIHVC 837
                              VE  T ++A + LG V  L   T   + + W+ DSGA +HVC
Sbjct: 272  SQRKSGSTVGSTSAID--VEKVTNLVANVGLGEVNMLSQYTRIVACRGWFLDSGATVHVC 329

Query: 838  NDKEQFKNY-EILDGQQVVMANGVRAKVLGRGDVHLDFTSGKKMVLTNVLHVPDVVKNLV 1014
             ++  F  Y  +  G  VV A+G R +V G+G V L+F  G+ + L +VLHVP + K LV
Sbjct: 330  GNRGSFLTYAPVPQGTVVVCADGHRVEVRGKGTVRLNFRDGQVVTLQDVLHVPGITKGLV 389

Query: 1015 SADILNKKGLKAVLESNNVILSKNGVFVGKGYSCNGLFKLSI 1140
            SAD  ++ G K V+++  V  S N ++VG+  +  G+++L +
Sbjct: 390  SADKFDRNGYKLVIKNLRVKFSLNDIYVGQAKNTGGMYRLDL 431


>gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]
          Length = 701

 Score =  257 bits (656), Expect = 7e-66
 Identities = 132/373 (35%), Positives = 223/373 (59%), Gaps = 3/373 (0%)
 Frame = +1

Query: 31   EIPPPKDGESD-EVKKQREKRQEDEVMCRGHILNTLSDTLYDLFTAVKSPREIWATLERE 207
            + P PK+GE+D +V    +     + +C+ +++N LSD+LY+++   K+ +E+W +L+R+
Sbjct: 73   DAPKPKEGETDIQVASAIDAWHHSDFLCKNYVMNGLSDSLYNVYIGKKTAKELWESLDRK 132

Query: 208  YASQKQGADKFLIKKYFEFKLDDSSSLMDQIHNLQVIVSKLKDYGVEISESMQVGAIIAK 387
            Y ++  G  KF++ ++ +FK+ DS +++ Q+  LQ+I+S++   G+ +SE+ QV AII K
Sbjct: 133  YKTEDAGTKKFVVGRFLDFKMVDSKTVISQVQELQIILSEILAEGMHLSETFQVAAIIEK 192

Query: 388  LPSSWNDYQKKLLHTSEILTISSVLKHLRIEEGARILHKKEFDSDPRVNMV-HEKKFKNK 564
            LP +W D++  L H  + + I  ++  LRIEE  R   +    S  + N V H  K K K
Sbjct: 193  LPPAWKDFKSYLKHKQKEMNIEGLVVKLRIEEDNRNAERIGAISMAKANFVEHGPKKKKK 252

Query: 565  RKNSENADSEDKKKKNRVCYNCGKKGHYKAECXXXXXXXXXXXXXXXXXLVEDATEIIAM 744
            +   +   S+ + K    CYNC K GH  ++C                 +VE+ T+ ++ 
Sbjct: 253  KLGPKGGISKKQTKFQGKCYNCDKMGHKASDC-------RLPKKKREANVVENITQHVSD 305

Query: 745  LSLGTVTELHLATPTSSKDWWYDSGAAIHVCNDKEQFKNYEILDG-QQVVMANGVRAKVL 921
            ++L  V        ++ ++WW D+GA  HVC+DK  F ++E     +++ M N   +++ 
Sbjct: 306  INLSAVVLEVNMVGSNPREWWIDTGATRHVCSDKGLFTSFEAASNREKLFMGNSATSEIE 365

Query: 922  GRGDVHLDFTSGKKMVLTNVLHVPDVVKNLVSADILNKKGLKAVLESNNVILSKNGVFVG 1101
            G+G V L  TSGK++ L NVL+VP++ KNLVS  +LNK G + V ES+ V+LSKNG++VG
Sbjct: 366  GQGKVALKMTSGKELTLNNVLYVPEIRKNLVSGSLLNKHGFRMVFESDMVVLSKNGMYVG 425

Query: 1102 KGYSCNGLFKLSI 1140
            KGY  +GLFKL++
Sbjct: 426  KGYVNDGLFKLNV 438


>ref|XP_003635668.1| PREDICTED: uncharacterized protein LOC100854178, partial [Vitis
            vinifera]
          Length = 478

 Score =  253 bits (645), Expect = 1e-64
 Identities = 133/393 (33%), Positives = 230/393 (58%), Gaps = 13/393 (3%)
 Frame = +1

Query: 1    VAYVLNPDLPEIPPPKDGESD-EVKKQREKRQEDEVMCRGHILNTLSDTLYDLFTAVKSP 177
            +A  L  D P++   K+ E D +V    +  +  + +CR +++N L+D+LY++++  K+ 
Sbjct: 65   LARFLTEDAPKL---KEDEHDIQVISAIDAWKHSDFLCRNYVMNGLADSLYNVYSDKKTA 121

Query: 178  REIWATLEREYASQKQGADKFLIKKYFEFKLDDSSSLMDQIHNLQVIVSKLKDYGVEISE 357
            +E+W +L+R+Y ++  GA KF++ ++ ++K+ DS +++ Q+  LQVI+ ++   G+ +SE
Sbjct: 122  KELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHAEGMMLSE 181

Query: 358  SMQVGAIIAKLPSSWNDYQKKLLHTSEILTISSVLKHLRIEEGARILHKKEFD--SDPRV 531
            + QV AII KLP +W D++  L H  + ++I  ++  LRIEE  R   KK     ++ + 
Sbjct: 182  TFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHTLNEAKA 241

Query: 532  NMVHEKKFKNKRKNSENADS---------EDKKKKNRVCYNCGKKGHYKAECXXXXXXXX 684
            N V   +  N + N+                K K    C+NCGK+GH   +C        
Sbjct: 242  NFVEHGQSSNAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDC-----RLP 296

Query: 685  XXXXXXXXXLVEDATEIIAMLSLGTVTELHLATPTSSKDWWYDSGAAIHVCNDKEQFKNY 864
                     +++D T+ +  + L TV        ++ K+WW D+GA  HVC+DK+ F  +
Sbjct: 297  KKNKPKEANVIDDITKNVYDIDLTTVVSEVNLVGSNPKEWWIDTGATRHVCSDKKMFSTF 356

Query: 865  E-ILDGQQVVMANGVRAKVLGRGDVHLDFTSGKKMVLTNVLHVPDVVKNLVSADILNKKG 1041
            E I +G++V M N   +++ G+G V L  TSGK++ LTNVL+VP++ KNLVS  +LN  G
Sbjct: 357  EPIENGEKVFMGNSATSEIKGQGKVILKMTSGKELTLTNVLYVPEIRKNLVSGSLLNNHG 416

Query: 1042 LKAVLESNNVILSKNGVFVGKGYSCNGLFKLSI 1140
             + V +SN V+LSK+G++VGKGY  +G++KL++
Sbjct: 417  FRLVFDSNKVVLSKSGMYVGKGYMSDGMWKLNV 449


>emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]
          Length = 1277

 Score =  251 bits (641), Expect = 4e-64
 Identities = 135/393 (34%), Positives = 234/393 (59%), Gaps = 13/393 (3%)
 Frame = +1

Query: 1    VAYVLNPDLPEIPPPKDGESD-EVKKQREKRQEDEVMCRGHILNTLSDTLYDLFTAVKSP 177
            +A  L  D P++   K+ E D +V    +  +  + +CR +++N L+D+LY++++  K+ 
Sbjct: 65   LARFLTEDAPKL---KEDEHDIQVISAIDAWKHSDFLCRNYVMNGLTDSLYNVYSDKKTA 121

Query: 178  REIWATLEREYASQKQGADKFLIKKYFEFKLDDSSSLMDQIHNLQVIVSKLKDYGVEISE 357
            +E+W +L+R+Y ++  GA KF++ ++ ++K+ DS +++ Q+  LQVI+ ++   G+ +SE
Sbjct: 122  KELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHADGMMLSE 181

Query: 358  SMQVGAIIAKLPSSWNDYQKKLLHTSEILTISSVLKHLRIEEGARILHKKEFD--SDPRV 531
            + QV AII KLP +W D++  L H  + ++I  ++  LRIEE  R   KK     ++ + 
Sbjct: 182  TFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHTLNEAQA 241

Query: 532  NMV-HEKKFKNKRKNSENADSE--------DKKKKNRVCYNCGKKGHYKAECXXXXXXXX 684
            N V H +  K K  N++   S+         K K    C+NCGK+GH   +C        
Sbjct: 242  NFVEHGQSSKAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDC-----RLP 296

Query: 685  XXXXXXXXXLVEDATEIIAMLSLGTVTELHLATPTSSKDWWYDSGAAIHVCNDKEQFKNY 864
                     ++++ T+ ++ + L TV        ++ K+WW D+GA  HVC+DK+ F  +
Sbjct: 297  KKNKPKEANVIDNITKNVSDIDLTTVVSEVNLVGSNPKEWWIDTGATRHVCSDKKMFSTF 356

Query: 865  E-ILDGQQVVMANGVRAKVLGRGDVHLDFTSGKKMVLTNVLHVPDVVKNLVSADILNKKG 1041
            E I +G++V M N   +++ G+G V L  TSGK++ LTNVL+VP++ KNLV   +LN  G
Sbjct: 357  EPIENGEKVFMGNSTTSEIKGQGKVILKMTSGKELTLTNVLYVPEIRKNLVFGSLLNNHG 416

Query: 1042 LKAVLESNNVILSKNGVFVGKGYSCNGLFKLSI 1140
             + V ESN V+LSK+G++VGKGY  +G++KL++
Sbjct: 417  FRLVFESNKVVLSKSGMYVGKGYMSDGMWKLNV 449


>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
          Length = 1316

 Score =  251 bits (640), Expect = 5e-64
 Identities = 135/393 (34%), Positives = 232/393 (59%), Gaps = 13/393 (3%)
 Frame = +1

Query: 1    VAYVLNPDLPEIPPPKDGESD-EVKKQREKRQEDEVMCRGHILNTLSDTLYDLFTAVKSP 177
            +A  L  D P++   K+ E D +V    +  +  + +CR +++N L+D+LY++++  K+ 
Sbjct: 65   LARFLTEDAPKL---KEDEHDIQVISAIDAWKHSDFLCRNYVMNGLADSLYNVYSDKKTA 121

Query: 178  REIWATLEREYASQKQGADKFLIKKYFEFKLDDSSSLMDQIHNLQVIVSKLKDYGVEISE 357
            +E+W +L+R+Y ++  GA KF++ ++ ++K+ DS +++ Q+  LQVI+ ++   G+ +SE
Sbjct: 122  KELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHAEGMMLSE 181

Query: 358  SMQVGAIIAKLPSSWNDYQKKLLHTSEILTISSVLKHLRIEEGARILHKKEFD--SDPRV 531
            + QV AII KLP +W D++  L H  + ++I  ++  LRIEE  R   KK     ++ + 
Sbjct: 182  TFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHTLNEAKA 241

Query: 532  NMV-HEKKFKNKRKNSENADSE--------DKKKKNRVCYNCGKKGHYKAECXXXXXXXX 684
            N V H +  K K  N++   S+         K K    C+NCGK+GH   +C        
Sbjct: 242  NFVEHGQSSKAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDC-----RLP 296

Query: 685  XXXXXXXXXLVEDATEIIAMLSLGTVTELHLATPTSSKDWWYDSGAAIHVCNDKEQFKNY 864
                     +++D T+ +  + L  V        ++ K+WW D+GA  HVC+DK+ F  +
Sbjct: 297  KKNKPKEANVIDDITKNVYDIDLTAVVSEVNLVGSNPKEWWIDTGATRHVCSDKKMFSTF 356

Query: 865  E-ILDGQQVVMANGVRAKVLGRGDVHLDFTSGKKMVLTNVLHVPDVVKNLVSADILNKKG 1041
            E I +G++V M N   +++ G+G V L  TSGK++ LTNVL+VP++ KNLVS  +LN  G
Sbjct: 357  EPIENGEKVFMGNSATSEIKGQGKVILKMTSGKELTLTNVLYVPEIRKNLVSGSLLNNHG 416

Query: 1042 LKAVLESNNVILSKNGVFVGKGYSCNGLFKLSI 1140
             + V  SN V+LSK+G++VGKGY  +G++KL++
Sbjct: 417  FRLVFXSNKVVLSKSGMYVGKGYMSDGMWKLNV 449


>ref|XP_003631792.1| PREDICTED: uncharacterized protein LOC100252656 [Vitis vinifera]
          Length = 946

 Score =  249 bits (637), Expect = 1e-63
 Identities = 134/393 (34%), Positives = 232/393 (59%), Gaps = 13/393 (3%)
 Frame = +1

Query: 1    VAYVLNPDLPEIPPPKDGESD-EVKKQREKRQEDEVMCRGHILNTLSDTLYDLFTAVKSP 177
            +A  L  D P++   K+ E D +V    +  +  + +CR +++N L+D+LY++++  K  
Sbjct: 65   LARFLTEDAPKL---KEDEHDIQVISAIDAWKHSDFLCRNYVMNGLADSLYNVYSDKKIA 121

Query: 178  REIWATLEREYASQKQGADKFLIKKYFEFKLDDSSSLMDQIHNLQVIVSKLKDYGVEISE 357
            +E+W +L+R+Y ++  GA KF++ ++ ++K+ DS +++ Q+  LQVI+ ++   G+ +SE
Sbjct: 122  KELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHAEGMMLSE 181

Query: 358  SMQVGAIIAKLPSSWNDYQKKLLHTSEILTISSVLKHLRIEEGARILHKKEFD--SDPRV 531
            + QV AII KLP +W D++  L H  + ++I  ++  LRIEE  R   KK     ++ + 
Sbjct: 182  TFQVAAIIEKLPPAWKDFKNCLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGVHTLNEAKA 241

Query: 532  NMV-HEKKFKNKRKNSENADSE--------DKKKKNRVCYNCGKKGHYKAECXXXXXXXX 684
            N V H +  K K  N++   S+         K K    C+NCGK+GH   +C        
Sbjct: 242  NFVEHGQSSKAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDC-----RLP 296

Query: 685  XXXXXXXXXLVEDATEIIAMLSLGTVTELHLATPTSSKDWWYDSGAAIHVCNDKEQFKNY 864
                     ++++ T+ ++ + L  V        ++ K+WW D+GA  HVC+DK+ F  +
Sbjct: 297  KKNKPKEANVIDNITKNVSNIDLTAVVSEVNLVGSNPKEWWIDTGATRHVCSDKKMFSTF 356

Query: 865  E-ILDGQQVVMANGVRAKVLGRGDVHLDFTSGKKMVLTNVLHVPDVVKNLVSADILNKKG 1041
            E I +G++V M N   +++ G+G V L  TSGK++ LTNVL+VP++ KNLVS  +LN  G
Sbjct: 357  EPIENGEKVFMGNSTTSEIKGQGKVILKMTSGKELTLTNVLYVPEIRKNLVSGSLLNNHG 416

Query: 1042 LKAVLESNNVILSKNGVFVGKGYSCNGLFKLSI 1140
             + V ESN  +LSK+G++VGKGY  +G++KL++
Sbjct: 417  FRLVFESNKFVLSKSGMYVGKGYMSDGMWKLNV 449


>gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo subsp. melo]
          Length = 1038

 Score =  247 bits (631), Expect = 6e-63
 Identities = 149/421 (35%), Positives = 215/421 (51%), Gaps = 37/421 (8%)
 Frame = +1

Query: 1    VAYVLNPDLPEIPPP------KDGES-----------DEVKKQR----EKRQEDEVMCRG 117
            V YVL  DLP   PP       D ES           D+VKK +    EK  +D    RG
Sbjct: 40   VDYVLTTDLPTSDPPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRG 99

Query: 118  HILNTLSDTLYDLFTAVKSPREIWATLEREYASQKQGADKFLIKKYFEFKLDDSSSLMDQ 297
            H+LN +SD ++DLF   KS ++IW+TLE  Y     G  K+++ K+ +F++ D   +++Q
Sbjct: 100  HLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQ 159

Query: 298  IHNLQVIVSKLKDYGVEISESMQVGAIIAKLPSSWNDYQKKLLHTSEILTISSVLKHLRI 477
            IH  + +V+ +   G+++ E +Q   ++ K P SWNDY+  L H  + L +  ++ H+R 
Sbjct: 160  IHEYENLVTNVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLHELISHMRT 219

Query: 478  EEGARI---------------LHKKEFDSDPRVNMVHEKKFKNKRKNSENADSEDKKKKN 612
            EE  R+               L +  F +  R       K KN  K          KKK 
Sbjct: 220  EEANRLKDKLASQNLNSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKK 279

Query: 613  RVCYNCGKKGHYKAECXXXXXXXXXXXXXXXXXLVEDATEIIAMLSLGTVTELHLATPTS 792
             VCY C K+GH   +C                 L E  +EIIA +    + E       +
Sbjct: 280  LVCYVCRKEGHKSYQC-NQRKGRPSQKPTPQANLAEQDSEIIAAIVEANLIE-------N 331

Query: 793  SKDWWYDSGAAIHVCNDKEQFKNYE-ILDGQQVVMANGVRAKVLGRGDVHLDFTSGKKMV 969
              DW  D+GA+ H C ++E   +YE  +DG+ V M N   A V+G+G V L  TSGK + 
Sbjct: 332  KTDWILDTGASRHFCTNRELLHDYEDTVDGECVFMGNSATAGVIGKGKVILKLTSGKTLS 391

Query: 970  LTNVLHVPDVVKNLVSADILNKKGLKAVLESNNVILSKNGVFVGKGYSCNGLFKLSINKV 1149
            L+NVL+VP + +NLVS  +LN+ GLK VLE + V+L+KNG FVGKGY  NGLF L+   +
Sbjct: 392  LSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGNFVGKGYLSNGLFVLNTISM 451

Query: 1150 N 1152
            N
Sbjct: 452  N 452


>gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Zea mays]
          Length = 1309

 Score =  239 bits (609), Expect = 2e-60
 Identities = 133/388 (34%), Positives = 205/388 (52%), Gaps = 12/388 (3%)
 Frame = +1

Query: 34   IPPPKDGESDEVKK-----QREKRQEDEVMCRGHILNTLSDTLYDLFTAVKSPREIWATL 198
            +P     +SD+  K     ++ K  E    C   +LN LS+ L+D+++A  S + +W  L
Sbjct: 59   VPQAASDDSDDAAKAAALAEKAKWDEANEACLSRLLNVLSNRLFDVYSAFTSAKGLWTDL 118

Query: 199  EREYASQKQGADKFLIKKYFEFKLDDSSSLMDQIHNLQVIVSKLKDYGVEISESMQVGAI 378
            E E++    G + F  + Y  +K+ +  S+M+Q+  +Q++V  L  YG  + +S QV AI
Sbjct: 119  ENEFSEVDNGNESFTTENYLNYKMVEGRSVMEQLQEIQLLVRDLVQYGCVLPDSFQVNAI 178

Query: 379  IAKLPSSWNDYQKKLLHTSEILTISSVLKHLRIEEGARILHKKEFDSDPRV-NMVHEKKF 555
            +AKLP SW D+     H  + +T++ +   + +EE AR  +K        V     ++KF
Sbjct: 179  LAKLPPSWRDFVTSRRHMKKQMTLTELSAAINVEERARSSNKPSQQLQAHVVEKGGDRKF 238

Query: 556  KNKRKNSENADSED------KKKKNRVCYNCGKKGHYKAECXXXXXXXXXXXXXXXXXLV 717
            + K+KNS   +         KKK++ +CY CG  GH    C                 +V
Sbjct: 239  QKKKKNSPQKNLNQPKSKKMKKKEDFICYVCGVSGHTARRCKLRKGKGPPPQRKEGNVVV 298

Query: 718  EDATEIIAMLSLGTVTELHLATPTSSKDWWYDSGAAIHVCNDKEQFKNYEILDGQQVVMA 897
                        G   +  +A+P  S DWW DSGA +H+C D+  F +++  +   V+M 
Sbjct: 299  NSTP--------GYALQAFMASP--SDDWWMDSGATVHICADRSMFSSFQGFNSAPVLMG 348

Query: 898  NGVRAKVLGRGDVHLDFTSGKKMVLTNVLHVPDVVKNLVSADILNKKGLKAVLESNNVIL 1077
            NGV A V G G V+L  TSGK +VL +VL+VP + +NL+S  +L ++GLK V ESN V+L
Sbjct: 349  NGVPAAVRGTGQVYLKLTSGKTLVLKDVLYVPSMSRNLISVSLLCRQGLKLVFESNKVVL 408

Query: 1078 SKNGVFVGKGYSCNGLFKLSINKVNNVS 1161
            SK G FVGK Y   GLF+LS+  +NN S
Sbjct: 409  SKFGTFVGKSYESGGLFRLSV--LNNHS 434


>emb|CAN69855.1| hypothetical protein VITISV_041230 [Vitis vinifera]
          Length = 1236

 Score =  232 bits (591), Expect = 3e-58
 Identities = 150/395 (37%), Positives = 199/395 (50%), Gaps = 14/395 (3%)
 Frame = +1

Query: 1    VAYVLNPDLPEIPPPKDGESDEVKKQREKRQEDEVMCRGHILNTLSDTLYDLFTAVKSPR 180
            + Y+L+P L  +P PK+ ++ +V   R+KR+EDE++CR                      
Sbjct: 40   IFYILDPILAPLPEPKENDTPQVVAARKKREEDELICR---------------------- 77

Query: 181  EIWATLEREYASQKQGADKFLIKKYFEFKLDDSSSLMDQIHNLQVIVSKLKDYGVEISES 360
                                      +FK  D   L+ QIH LQVIV+KLK   +E+  +
Sbjct: 78   --------------------------DFKCFDEKPLLPQIHELQVIVNKLKVLKIELXXA 111

Query: 361  MQVGAIIAKLPSSWNDYQKKLLHTSEILTISSVLKHLRIEEGARILHKKEFDSDPRVNMV 540
             QVGAI+AKLPSSW  Y+K++ H SE  ++  + KHL IEE +R   K   +S+   N  
Sbjct: 112  FQVGAIVAKLPSSWKGYRKRIXHKSEDYSLEEIQKHLXIEEESRSRDKMVEESNXGTNKA 171

Query: 541  H--------EKKFKNKRKNSENADSEDK-----KKKNRVCYNCGKKGHYKAECXXXXXXX 681
            +          K  N + NS N  S  K     K K   C+ CGK  HY  EC       
Sbjct: 172  NAVSKXNHPRXKNNNDKXNSGNYMSPKKNQEQFKGKKGPCFVCGKPEHYVRECRYRKDQK 231

Query: 682  XXXXXXXXXXLVEDATEIIAMLSLGTVTELHLATPTSSKDWWYDSGAAIHVCNDKEQFKN 861
                            EIIA LS   V +  +      + WWYD+ A IHV   K  FK 
Sbjct: 232  GAVVNAIDE-------EIIATLSDVCVVQGKV------QGWWYDTCATIHVTYYKSXFKT 278

Query: 862  YEILDG-QQVVMANGVRAKVLGRGDVHLDFTSGKKMVLTNVLHVPDVVKNLVSADILNKK 1038
            +E   G Q+V M N  R+KVLG+G + + FTSGKK+ L NVL+VPD+ KNLVS D L K 
Sbjct: 279  FEDAKGDQEVQMGNEGRSKVLGKGTIEVAFTSGKKVTLINVLYVPDMNKNLVSGDFLGKP 338

Query: 1039 GLKAVLESNNVILSKNGVFVGKGYSCNGLFKLSIN 1143
            G+KAV ES  +ILSK+G FVGKGYSC+G+ KL  N
Sbjct: 339  GIKAVFESGKLILSKSGNFVGKGYSCDGMIKLCTN 373


>gb|AAM95676.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1138

 Score =  217 bits (552), Expect = 8e-54
 Identities = 122/380 (32%), Positives = 202/380 (53%), Gaps = 19/380 (5%)
 Frame = +1

Query: 73   KQREKRQEDEVMCRGHILNTLSDTLYDLFTAVKSPREIWATLEREYASQKQGADKFLIKK 252
            ++  K +  + + RG +++ L+D + D++  + S +++W  LE ++     G++ +++++
Sbjct: 19   EEEAKFEASDCLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQ 78

Query: 253  YFEFKLDDSSSLMDQIHNLQVIVSKLKDYGVEISESMQVGAIIAKLPSSWNDYQKKLLHT 432
            ++++K+ D  S+++Q H +Q++  +L++   E+ +    G IIAKLP SW+D+   L H 
Sbjct: 79   FYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHN 138

Query: 433  SEILTISSVLKHLRIEEGARI--LHKKEFDSDPRVNMVHEKK----FKNKR-------KN 573
             +  ++  ++  L +EE AR   +  K+ +     NMV +K       NK+       K 
Sbjct: 139  RQEFSVPDLIGSLGVEEKARAKDVQGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKA 198

Query: 574  SENADSEDKKKKNRVCYNCGKKGHYKAECXXXXXXXXXXXXXXXXXLVEDATEIIAMLSL 753
            + N   + K K    C+ CGK GH+  +C                   +D      ++S 
Sbjct: 199  ATNFKKKSKGKAKGDCFVCGKSGHWAKDCPER----------------KDRKSANMIISE 242

Query: 754  GTVTELH---LATPTS---SKDWWYDSGAAIHVCNDKEQFKNYEILDGQQVVMANGVRAK 915
            G  T  +   L T  S   S DWW D+GA IHVC D   F +Y++  G  ++M NG  A 
Sbjct: 243  GGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVRRGSSLLMGNGSLAA 302

Query: 916  VLGRGDVHLDFTSGKKMVLTNVLHVPDVVKNLVSADILNKKGLKAVLESNNVILSKNGVF 1095
            V G G V L FTSGK + L NV HVP + KNLVS  +L ++G + V ESN  ++SK G F
Sbjct: 303  VHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTF 362

Query: 1096 VGKGYSCNGLFKLSINKVNN 1155
            VGKGY   GLF+ S+N + N
Sbjct: 363  VGKGYDSGGLFRFSLNDMCN 382


>gb|ABA97124.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1453

 Score =  216 bits (550), Expect = 1e-53
 Identities = 122/380 (32%), Positives = 202/380 (53%), Gaps = 19/380 (5%)
 Frame = +1

Query: 73   KQREKRQEDEVMCRGHILNTLSDTLYDLFTAVKSPREIWATLEREYASQKQGADKFLIKK 252
            ++  K +  + + RG +++ L+D + D++  + S +++W  LE ++     G++ +++++
Sbjct: 204  EEEAKFEASDCLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYIMEQ 263

Query: 253  YFEFKLDDSSSLMDQIHNLQVIVSKLKDYGVEISESMQVGAIIAKLPSSWNDYQKKLLHT 432
            ++++K+ D  S+++Q H +Q++  +L++   E+ +    G IIAKLP SW+D+   L H 
Sbjct: 264  FYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHK 323

Query: 433  SEILTISSVLKHLRIEEGARI--LHKKEFDSDPRVNMVHEKK----FKNKR-------KN 573
             +  ++  ++  L +EE AR   +  K+ +     NMV +K       NK+       K 
Sbjct: 324  RQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKA 383

Query: 574  SENADSEDKKKKNRVCYNCGKKGHYKAECXXXXXXXXXXXXXXXXXLVEDATEIIAMLSL 753
            + N   + K K    C+ CGK GH+  +C                   +D      ++S 
Sbjct: 384  ATNFKKKGKGKAKGDCFVCGKSGHWAKDCPER----------------KDRKSANMIISE 427

Query: 754  GTVTELH---LATPTS---SKDWWYDSGAAIHVCNDKEQFKNYEILDGQQVVMANGVRAK 915
            G  T  +   L T  S   S DWW D+GA IHVC D   F +Y++  G  ++M NG  A 
Sbjct: 428  GGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVERGSSLLMGNGSLAA 487

Query: 916  VLGRGDVHLDFTSGKKMVLTNVLHVPDVVKNLVSADILNKKGLKAVLESNNVILSKNGVF 1095
            V G G V L FTSGK + L NV HVP + KNLVS  +L ++G + V ESN  ++SK G F
Sbjct: 488  VHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTF 547

Query: 1096 VGKGYSCNGLFKLSINKVNN 1155
            VGKGY   GLF+ S+N + N
Sbjct: 548  VGKGYDSGGLFRFSLNDMCN 567


>gb|ABA98084.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1298

 Score =  216 bits (549), Expect = 2e-53
 Identities = 122/380 (32%), Positives = 202/380 (53%), Gaps = 19/380 (5%)
 Frame = +1

Query: 73   KQREKRQEDEVMCRGHILNTLSDTLYDLFTAVKSPREIWATLEREYASQKQGADKFLIKK 252
            ++  K +  + + RG +++ L+D + D++  + S +++W  LE ++     G++ +++++
Sbjct: 164  EEEAKFEASDCLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQ 223

Query: 253  YFEFKLDDSSSLMDQIHNLQVIVSKLKDYGVEISESMQVGAIIAKLPSSWNDYQKKLLHT 432
            ++++K+ D  S+++Q H +Q++  +L++   E+ +    G IIAKLP SW+D+   L H 
Sbjct: 224  FYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHK 283

Query: 433  SEILTISSVLKHLRIEEGARI--LHKKEFDSDPRVNMVHEKK----FKNKR-------KN 573
             +  ++  ++  L +EE AR   +  K+ +     NMV +K       NK+       K 
Sbjct: 284  RQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKA 343

Query: 574  SENADSEDKKKKNRVCYNCGKKGHYKAECXXXXXXXXXXXXXXXXXLVEDATEIIAMLSL 753
            + N   + K K    C+ CGK GH+  +C                   +D      ++S 
Sbjct: 344  ATNFKKKSKGKAKGDCFVCGKSGHWAKDCPER----------------KDRKSANMIISE 387

Query: 754  GTVTELH---LATPTS---SKDWWYDSGAAIHVCNDKEQFKNYEILDGQQVVMANGVRAK 915
            G  T  +   L T  S   S DWW D+GA IHVC D   F +Y++  G  ++M NG  A 
Sbjct: 388  GGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSLAA 447

Query: 916  VLGRGDVHLDFTSGKKMVLTNVLHVPDVVKNLVSADILNKKGLKAVLESNNVILSKNGVF 1095
            V G G V L FTSGK + L NV HVP + KNLVS  +L ++G + V ESN  ++SK G F
Sbjct: 448  VHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTF 507

Query: 1096 VGKGYSCNGLFKLSINKVNN 1155
            VGKGY   GLF+ S+N + N
Sbjct: 508  VGKGYDSGGLFRFSLNDMCN 527


>gb|AAP54028.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1361

 Score =  216 bits (549), Expect = 2e-53
 Identities = 125/391 (31%), Positives = 204/391 (52%), Gaps = 19/391 (4%)
 Frame = +1

Query: 40   PPKDGESDEVKKQREKRQEDEVMCRGHILNTLSDTLYDLFTAVKSPREIWATLEREYASQ 219
            PP   E D       K +  + + RG +++ L+D + D++  + S +++W  LE ++   
Sbjct: 181  PPLSPEEDA------KFEASDCLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVS 234

Query: 220  KQGADKFLIKKYFEFKLDDSSSLMDQIHNLQVIVSKLKDYGVEISESMQVGAIIAKLPSS 399
              G++ +++++++++K+ D  S+++Q H +Q++  +L++   E+ +    G IIAKLP S
Sbjct: 235  DAGSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPS 294

Query: 400  WNDYQKKLLHTSEILTISSVLKHLRIEEGARI--LHKKEFDSDPRVNMVHEKK----FKN 561
            W+D+   L H  +  ++  ++  L +EE AR   +  K+ +     NMV +K       N
Sbjct: 295  WSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDIRGKKVEGGSSANMVQKKNPHASHNN 354

Query: 562  KR-------KNSENADSEDKKKKNRVCYNCGKKGHYKAECXXXXXXXXXXXXXXXXXLVE 720
            K+       K + N   + K K    C+ CGK GH+  +C                   +
Sbjct: 355  KKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPER----------------K 398

Query: 721  DATEIIAMLSLGTVTELH---LATPTS---SKDWWYDSGAAIHVCNDKEQFKNYEILDGQ 882
            D      ++S G  T  +   L T  S   S DWW D+G  IHVC D   F +Y++  G 
Sbjct: 399  DRKSANMIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGTNIHVCADISLFSSYQVGRGS 458

Query: 883  QVVMANGVRAKVLGRGDVHLDFTSGKKMVLTNVLHVPDVVKNLVSADILNKKGLKAVLES 1062
             ++M NG+ A V G G V L FTSGK + L NV HVP + KNLVS  +L ++G + V ES
Sbjct: 459  SLLMGNGLLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFES 518

Query: 1063 NNVILSKNGVFVGKGYSCNGLFKLSINKVNN 1155
            N  ++SK G FVGKGY   GLF+ S+N + N
Sbjct: 519  NKCVVSKYGTFVGKGYDSGGLFRFSLNDMCN 549


>gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1268

 Score =  216 bits (549), Expect = 2e-53
 Identities = 122/380 (32%), Positives = 202/380 (53%), Gaps = 19/380 (5%)
 Frame = +1

Query: 73   KQREKRQEDEVMCRGHILNTLSDTLYDLFTAVKSPREIWATLEREYASQKQGADKFLIKK 252
            ++  K +  + + RG +++ L+D + D++  + S +++W  LE ++     G++ +++++
Sbjct: 19   EEEAKFEASDCLFRGALISVLADNIVDVYMHMPSRKDMWDALEAKFGVSDAGSELYVMEQ 78

Query: 253  YFEFKLDDSSSLMDQIHNLQVIVSKLKDYGVEISESMQVGAIIAKLPSSWNDYQKKLLHT 432
            ++++K+ D  S+++Q H +Q++  +L++   E+ +    G IIAKLP SW+D+   L H 
Sbjct: 79   FYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHK 138

Query: 433  SEILTISSVLKHLRIEEGARI--LHKKEFDSDPRVNMVHEKK----FKNKR-------KN 573
             +  ++  ++  L +EE AR   +  K+ +     NMV +K       NK+       K 
Sbjct: 139  RQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKA 198

Query: 574  SENADSEDKKKKNRVCYNCGKKGHYKAECXXXXXXXXXXXXXXXXXLVEDATEIIAMLSL 753
            + N   + K K    C+ CGK GH+  +C                   +D      ++S 
Sbjct: 199  ATNFKKKSKGKAKGDCFVCGKSGHWAKDCPER----------------KDRKSANMIISE 242

Query: 754  GTVTELH---LATPTS---SKDWWYDSGAAIHVCNDKEQFKNYEILDGQQVVMANGVRAK 915
            G  T  +   L T  S   S DWW D+GA IHVC D   F +Y++  G  ++M NG  A 
Sbjct: 243  GGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSLAA 302

Query: 916  VLGRGDVHLDFTSGKKMVLTNVLHVPDVVKNLVSADILNKKGLKAVLESNNVILSKNGVF 1095
            V G G V L FTSGK + L NV HVP + KNLVS  +L ++G + V ESN  ++SK G F
Sbjct: 303  VHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTF 362

Query: 1096 VGKGYSCNGLFKLSINKVNN 1155
            VGKGY   GLF+ S+N + N
Sbjct: 363  VGKGYDSGGLFRFSLNDMCN 382


>gb|AAS07202.1| putative integrase [Oryza sativa Japonica Group]
            gi|108708916|gb|ABF96711.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1456

 Score =  216 bits (549), Expect = 2e-53
 Identities = 122/380 (32%), Positives = 203/380 (53%), Gaps = 19/380 (5%)
 Frame = +1

Query: 73   KQREKRQEDEVMCRGHILNTLSDTLYDLFTAVKSPREIWATLEREYASQKQGADKFLIKK 252
            ++  K +  + + RG +++ L+D + D++  + S +++W +LE ++     G++ +++++
Sbjct: 207  EEEAKFEASDCLFRGALISVLADNIVDVYMHMPSGKDMWDSLEAKFGVSDAGSELYVMEQ 266

Query: 253  YFEFKLDDSSSLMDQIHNLQVIVSKLKDYGVEISESMQVGAIIAKLPSSWNDYQKKLLHT 432
            ++++K+ D  S+++Q H +Q++  +L++   E+ +    G IIAKLP SW+D+   L H 
Sbjct: 267  FYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHK 326

Query: 433  SEILTISSVLKHLRIEEGARI--LHKKEFDSDPRVNMVHEKK----FKNKR-------KN 573
             +  ++  ++  L +EE AR   +  K+ +     NMV +K       NK+       K 
Sbjct: 327  RQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKA 386

Query: 574  SENADSEDKKKKNRVCYNCGKKGHYKAECXXXXXXXXXXXXXXXXXLVEDATEIIAMLSL 753
            + N   + K K    C+ CGK GH+  +C                   +D      ++S 
Sbjct: 387  ATNFKKKGKGKAKGDCFVCGKSGHWAKDCPER----------------KDRKSANMIISE 430

Query: 754  GTVTELH---LATPTS---SKDWWYDSGAAIHVCNDKEQFKNYEILDGQQVVMANGVRAK 915
            G  T  +   L T  S   S DWW D+GA IHVC D   F +Y++  G  ++M NG  A 
Sbjct: 431  GGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMVNGSLAA 490

Query: 916  VLGRGDVHLDFTSGKKMVLTNVLHVPDVVKNLVSADILNKKGLKAVLESNNVILSKNGVF 1095
            V G G V L FTSGK + L NV HVP + KNLVS  +L ++G + V ESN  ++SK G F
Sbjct: 491  VHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTF 550

Query: 1096 VGKGYSCNGLFKLSINKVNN 1155
            VGKGY   GLF+ S+N + N
Sbjct: 551  VGKGYDSGGLFRFSLNDMCN 570