BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00001546
         (1232 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   291   e-134
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   291   e-134
ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, ...   288   e-133
ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II su...   288   e-133
gb|EMJ03015.1| hypothetical protein PRUPE_ppa008812mg [Prunus pe...   275   e-127
ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II su...   274   e-126
gb|EPS71627.1| hypothetical protein M569_03132 [Genlisea aurea]       269   e-125
ref|XP_001765827.1| predicted protein [Physcomitrella patens] gi...   261   e-118
ref|XP_002960614.1| hypothetical protein SELMODRAFT_75337 [Selag...   249   e-113
ref|XP_002983424.1| hypothetical protein SELMODRAFT_180179 [Sela...   249   e-113
gb|ADE77570.1| unknown [Picea sitchensis]                             245   e-111
ref|XP_003576823.1| PREDICTED: DNA-directed RNA polymerase II su...   227   e-107
ref|XP_004956290.1| PREDICTED: DNA-directed RNA polymerase II su...   224   e-106
gb|EMS46394.1| DNA-directed RNA polymerase II subunit RPB3-A [Tr...   225   e-101
gb|EMJ01858.1| hypothetical protein PRUPE_ppa016873mg [Prunus pe...   201   2e-91
gb|EOX98333.1| DNA-directed RNA polymerase family protein [Theob...   292   2e-76
emb|CBI40277.3| unnamed protein product [Vitis vinifera]              291   3e-76
dbj|BAN19962.1| RNA polymerase II, partial [Echinochloa phyllopo...   227   1e-75
ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citr...   286   2e-74
ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   285   3e-74

>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
           vinifera]
          Length = 318

 Score =  291 bits (746), Expect(2) = e-134
 Identities = 152/189 (80%), Positives = 165/189 (87%)
 Frame = +1

Query: 385 TIXPVDFPDSSTGLDNADNRGIIIVKLRRGQELGLRAIARKGIGKDHAKWSPAATVTFMY 564
           T+ PVDF DSS G D+AD +GIIIVKLRRGQEL LRAIARKGIGKDHAKWSPAATVTFMY
Sbjct: 131 TVVPVDFSDSS-GYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 189

Query: 565 EPEIYINXXXXXXXXXXXXXXFVESSPTKVFDINANTQQVYIYDAEAYTYDDEVLKKAEA 744
           EPEI+IN              +VESSPTKVFDI+A++QQV + DAEAYTYDDEVLKKAEA
Sbjct: 190 EPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEVLKKAEA 249

Query: 745 MGKPGLVEIHAKEDSFIFTVETTGAIKASQLFLNAIEVLKQKLDAVRLSADTVEADEQFG 924
           MGKPGLVEI+AKEDSFIFTVE+TGAIKASQL LNAI+VLKQKLDAVRLS DTVEAD+QFG
Sbjct: 250 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVEADDQFG 309

Query: 925 ELGAHMRGG 951
           ELGAHMRGG
Sbjct: 310 ELGAHMRGG 318



 Score =  215 bits (547), Expect(2) = e-134
 Identities = 104/113 (92%), Positives = 110/113 (97%)
 Frame = +3

Query: 51  GVSYQRFPKIKIRTVRDDFMKFELRETDASIANALRRVMIAEVPTIAIDLVEIEVNSSVL 230
           GVSYQRFPKIKIR V+DD+ KFELRETDAS+ANALRRVMIAEVPT+AIDLVEIEVNSSVL
Sbjct: 3   GVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 62

Query: 231 NDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIND 389
           NDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCE+CSVEFHLRAKC+ D
Sbjct: 63  NDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTD 115


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  291 bits (746), Expect(2) = e-134
 Identities = 152/189 (80%), Positives = 165/189 (87%)
 Frame = +1

Query: 385 TIXPVDFPDSSTGLDNADNRGIIIVKLRRGQELGLRAIARKGIGKDHAKWSPAATVTFMY 564
           T+ PVDF DSS G D+AD +GIIIVKLRRGQEL LRAIARKGIGKDHAKWSPAATVTFMY
Sbjct: 131 TVVPVDFSDSS-GYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 189

Query: 565 EPEIYINXXXXXXXXXXXXXXFVESSPTKVFDINANTQQVYIYDAEAYTYDDEVLKKAEA 744
           EPEI+IN              +VESSPTKVFDI+A++QQV + DAEAYTYDDEVLKKAEA
Sbjct: 190 EPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEVLKKAEA 249

Query: 745 MGKPGLVEIHAKEDSFIFTVETTGAIKASQLFLNAIEVLKQKLDAVRLSADTVEADEQFG 924
           MGKPGLVEI+AKEDSFIFTVE+TGAIKASQL LNAI+VLKQKLDAVRLS DTVEAD+QFG
Sbjct: 250 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVEADDQFG 309

Query: 925 ELGAHMRGG 951
           ELGAHMRGG
Sbjct: 310 ELGAHMRGG 318



 Score =  214 bits (544), Expect(2) = e-134
 Identities = 103/113 (91%), Positives = 110/113 (97%)
 Frame = +3

Query: 51  GVSYQRFPKIKIRTVRDDFMKFELRETDASIANALRRVMIAEVPTIAIDLVEIEVNSSVL 230
           GVSYQRFPKIKIR V+DD+ KFELRETDAS+ANALRRVMIAEVPT+AIDLVEIEVNSSVL
Sbjct: 3   GVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 62

Query: 231 NDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIND 389
           NDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLRAKC+ D
Sbjct: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTD 115


>ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
           [Solanum tuberosum]
          Length = 319

 Score =  288 bits (738), Expect(2) = e-133
 Identities = 147/189 (77%), Positives = 158/189 (83%)
 Frame = +1

Query: 385 TIXPVDFPDSSTGLDNADNRGIIIVKLRRGQELGLRAIARKGIGKDHAKWSPAATVTFMY 564
           T+ PVD+ D+S+  DN  N+GIIIVKLRRGQEL LRAIARKGIGKDHAKWSPAATVTFMY
Sbjct: 131 TVVPVDYSDTSSSFDNTPNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190

Query: 565 EPEIYINXXXXXXXXXXXXXXFVESSPTKVFDINANTQQVYIYDAEAYTYDDEVLKKAEA 744
           EPEIYIN               VESSPTKVF I+   +QV + D EAYTYDDEVLKKAEA
Sbjct: 191 EPEIYINEDMMESLTLEEKTELVESSPTKVFGIDPENKQVIVVDPEAYTYDDEVLKKAEA 250

Query: 745 MGKPGLVEIHAKEDSFIFTVETTGAIKASQLFLNAIEVLKQKLDAVRLSADTVEADEQFG 924
           MGKPG+VEIHAKEDSFIFTVETTGA+KASQL LNAIEVLKQKLDAVRLS DTVEAD+QFG
Sbjct: 251 MGKPGVVEIHAKEDSFIFTVETTGAVKASQLVLNAIEVLKQKLDAVRLSDDTVEADDQFG 310

Query: 925 ELGAHMRGG 951
           ELGAHMRGG
Sbjct: 311 ELGAHMRGG 319



 Score =  215 bits (548), Expect(2) = e-133
 Identities = 103/113 (91%), Positives = 111/113 (98%)
 Frame = +3

Query: 51  GVSYQRFPKIKIRTVRDDFMKFELRETDASIANALRRVMIAEVPTIAIDLVEIEVNSSVL 230
           GVSYQRFPKIKIR V+DDFMKFELRETDASIANALRR+MIAEVPTIAIDLVEIEVNSSVL
Sbjct: 3   GVSYQRFPKIKIREVKDDFMKFELRETDASIANALRRIMIAEVPTIAIDLVEIEVNSSVL 62

Query: 231 NDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIND 389
           NDEFI+HRLGL+PLTSERAM+MRFSRDCDACDGDGQCEYCSVEF+LR KC++D
Sbjct: 63  NDEFISHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFYLRVKCLSD 115


>ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Solanum lycopersicum]
          Length = 319

 Score =  288 bits (738), Expect(2) = e-133
 Identities = 147/189 (77%), Positives = 158/189 (83%)
 Frame = +1

Query: 385 TIXPVDFPDSSTGLDNADNRGIIIVKLRRGQELGLRAIARKGIGKDHAKWSPAATVTFMY 564
           T+ PVD+ D+S+  DN  N+GIIIVKLRRGQEL LRAIARKGIGKDHAKWSPAATVTFMY
Sbjct: 131 TVVPVDYSDASSSFDNTPNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190

Query: 565 EPEIYINXXXXXXXXXXXXXXFVESSPTKVFDINANTQQVYIYDAEAYTYDDEVLKKAEA 744
           EPEIYIN               VESSPTKVF I+   +QV + D EAYTYDDEVLKKAEA
Sbjct: 191 EPEIYINEDMMESLTLEEKTELVESSPTKVFGIDPENKQVIVVDPEAYTYDDEVLKKAEA 250

Query: 745 MGKPGLVEIHAKEDSFIFTVETTGAIKASQLFLNAIEVLKQKLDAVRLSADTVEADEQFG 924
           MGKPG+VEIHAKEDSFIFTVETTGA+KASQL LNAIEVLKQKLDAVRLS DTVEAD+QFG
Sbjct: 251 MGKPGVVEIHAKEDSFIFTVETTGAVKASQLVLNAIEVLKQKLDAVRLSDDTVEADDQFG 310

Query: 925 ELGAHMRGG 951
           ELGAHMRGG
Sbjct: 311 ELGAHMRGG 319



 Score =  214 bits (544), Expect(2) = e-133
 Identities = 101/113 (89%), Positives = 111/113 (98%)
 Frame = +3

Query: 51  GVSYQRFPKIKIRTVRDDFMKFELRETDASIANALRRVMIAEVPTIAIDLVEIEVNSSVL 230
           GVSYQRFPKIK+R V+DDFMKFELR+TDASIANALRR+MIAEVPTIAIDLVEIEVNSSVL
Sbjct: 3   GVSYQRFPKIKVREVKDDFMKFELRDTDASIANALRRIMIAEVPTIAIDLVEIEVNSSVL 62

Query: 231 NDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIND 389
           NDEFI+HRLGL+PLTSERAM+MRFSRDCDACDGDGQCEYCSVEF+LR KC++D
Sbjct: 63  NDEFISHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFYLRVKCLSD 115


>gb|EMJ03015.1| hypothetical protein PRUPE_ppa008812mg [Prunus persica]
          Length = 318

 Score =  275 bits (703), Expect(2) = e-127
 Identities = 140/189 (74%), Positives = 160/189 (84%)
 Frame = +1

Query: 385 TIXPVDFPDSSTGLDNADNRGIIIVKLRRGQELGLRAIARKGIGKDHAKWSPAATVTFMY 564
           T+ PVDF DS+ G+++++ +GIIIVKLRRGQEL LRAIARKGIGKDHAKWSPAATVTFMY
Sbjct: 131 TVVPVDFSDSA-GMESSEQKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 189

Query: 565 EPEIYINXXXXXXXXXXXXXXFVESSPTKVFDINANTQQVYIYDAEAYTYDDEVLKKAEA 744
           EP+I IN              +VESSPTKVFD +  T++V + D EAYTYDDEV+KKAEA
Sbjct: 190 EPDIRINEELMDMLTLDEKKAWVESSPTKVFDFDPKTEKVMVVDPEAYTYDDEVIKKAEA 249

Query: 745 MGKPGLVEIHAKEDSFIFTVETTGAIKASQLFLNAIEVLKQKLDAVRLSADTVEADEQFG 924
           MGKPGLV+I AKEDSFIFTVE+TGA+KASQL LNAIE+LKQKLDAVRLS DTVEAD+QFG
Sbjct: 250 MGKPGLVDIIAKEDSFIFTVESTGAVKASQLLLNAIEILKQKLDAVRLSEDTVEADDQFG 309

Query: 925 ELGAHMRGG 951
           ELGAHMRGG
Sbjct: 310 ELGAHMRGG 318



 Score =  207 bits (526), Expect(2) = e-127
 Identities = 97/113 (85%), Positives = 109/113 (96%)
 Frame = +3

Query: 51  GVSYQRFPKIKIRTVRDDFMKFELRETDASIANALRRVMIAEVPTIAIDLVEIEVNSSVL 230
           G SYQR P++KIR +RDD+MKFELR+TDAS+ANALRRVMIAEVPT+AIDLVEIE+NSSVL
Sbjct: 3   GKSYQRLPRVKIREMRDDYMKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVL 62

Query: 231 NDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIND 389
           NDEFIAHRLGLIPLTS+RAM+MRFSRDCDACDGDGQCE+CSVEFHLRAKC +D
Sbjct: 63  NDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSD 115


>ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Fragaria vesca subsp. vesca]
          Length = 318

 Score =  274 bits (701), Expect(2) = e-126
 Identities = 142/189 (75%), Positives = 159/189 (84%)
 Frame = +1

Query: 385 TIXPVDFPDSSTGLDNADNRGIIIVKLRRGQELGLRAIARKGIGKDHAKWSPAATVTFMY 564
           T+ PVDF D+S G + ++ RGIIIVKLRRGQEL LRAIARKGIGKDHAKWSPAATVTFMY
Sbjct: 131 TVVPVDFSDAS-GYEASEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 189

Query: 565 EPEIYINXXXXXXXXXXXXXXFVESSPTKVFDINANTQQVYIYDAEAYTYDDEVLKKAEA 744
           EP+I IN              +V+SSPTKVF+I+ NT +V + D EAYTYDDEV+KKAEA
Sbjct: 190 EPDIRINEEMMDTLSLEDKAAWVDSSPTKVFEIDPNTGKVVVVDPEAYTYDDEVIKKAEA 249

Query: 745 MGKPGLVEIHAKEDSFIFTVETTGAIKASQLFLNAIEVLKQKLDAVRLSADTVEADEQFG 924
           MGKPGLV+I AKEDSFIFTVE+TGAIKASQL LNAIE+LKQKLDAVRLS DTVEAD+QFG
Sbjct: 250 MGKPGLVDITAKEDSFIFTVESTGAIKASQLLLNAIEILKQKLDAVRLSEDTVEADDQFG 309

Query: 925 ELGAHMRGG 951
           ELGAHMRGG
Sbjct: 310 ELGAHMRGG 318



 Score =  206 bits (523), Expect(2) = e-126
 Identities = 96/113 (84%), Positives = 109/113 (96%)
 Frame = +3

Query: 51  GVSYQRFPKIKIRTVRDDFMKFELRETDASIANALRRVMIAEVPTIAIDLVEIEVNSSVL 230
           G SYQRFP++KIR +R D++KFELR+TDAS+ANALRRVMIAEVPT+AIDLVEIE+NSSVL
Sbjct: 3   GKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVL 62

Query: 231 NDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIND 389
           NDEFIAHRLGLIPLTS+RAM+MRFSRDCDACDGDGQCEYCSVEFHLRA+C +D
Sbjct: 63  NDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSD 115


>gb|EPS71627.1| hypothetical protein M569_03132 [Genlisea aurea]
          Length = 320

 Score =  269 bits (688), Expect(2) = e-125
 Identities = 141/189 (74%), Positives = 156/189 (82%), Gaps = 1/189 (0%)
 Frame = +1

Query: 385 TIXPVDFPDSSTGLDNADNRG-IIIVKLRRGQELGLRAIARKGIGKDHAKWSPAATVTFM 561
           ++  VDF   S+  D+ +N+G I+IVKLR+GQEL LRAIARKGIGKDHAKWSPA+TVTFM
Sbjct: 132 SVQAVDFSYPSSRSDDQENKGGIVIVKLRQGQELVLRAIARKGIGKDHAKWSPASTVTFM 191

Query: 562 YEPEIYINXXXXXXXXXXXXXXFVESSPTKVFDINANTQQVYIYDAEAYTYDDEVLKKAE 741
           YEPEIYIN              F++SSPT VF IN  TQQVY+ DAEAYTYD+EVLKKAE
Sbjct: 192 YEPEIYINEELMESLTLEEKQEFIDSSPTNVFAINPTTQQVYVADAEAYTYDEEVLKKAE 251

Query: 742 AMGKPGLVEIHAKEDSFIFTVETTGAIKASQLFLNAIEVLKQKLDAVRLSADTVEADEQF 921
            MGK  LVEI+AKEDSFIFTVETTGAIKASQL LNAIE+LKQKLDAVRLSADTVEADEQF
Sbjct: 252 GMGKARLVEINAKEDSFIFTVETTGAIKASQLLLNAIEILKQKLDAVRLSADTVEADEQF 311

Query: 922 GELGAHMRG 948
           GELGAHMRG
Sbjct: 312 GELGAHMRG 320



 Score =  209 bits (532), Expect(2) = e-125
 Identities = 102/113 (90%), Positives = 109/113 (96%)
 Frame = +3

Query: 51  GVSYQRFPKIKIRTVRDDFMKFELRETDASIANALRRVMIAEVPTIAIDLVEIEVNSSVL 230
           G+SYQRFPKIKIRTVRDDFMKFELR+TDASIANALRRVMI+EVPTIAIDLVEIEVN+SVL
Sbjct: 3   GISYQRFPKIKIRTVRDDFMKFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNTSVL 62

Query: 231 NDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIND 389
           NDEFIAHRLGLIPL S+RAMAMRFSRDCDACDGDG CEYCSVEF LRAKC ++
Sbjct: 63  NDEFIAHRLGLIPLVSDRAMAMRFSRDCDACDGDGVCEYCSVEFILRAKCTDE 115


>ref|XP_001765827.1| predicted protein [Physcomitrella patens]
           gi|162683004|gb|EDQ69418.1| predicted protein
           [Physcomitrella patens]
          Length = 324

 Score =  261 bits (667), Expect(2) = e-118
 Identities = 134/192 (69%), Positives = 156/192 (81%), Gaps = 3/192 (1%)
 Frame = +1

Query: 385 TIXPVDFPDSST---GLDNADNRGIIIVKLRRGQELGLRAIARKGIGKDHAKWSPAATVT 555
           +I PVD    +    G ++ D RGI+IVKLR+GQEL LRAIARKGIGKDHAKWSPAATVT
Sbjct: 131 SIIPVDAAGRAADMGGFESNDTRGILIVKLRKGQELKLRAIARKGIGKDHAKWSPAATVT 190

Query: 556 FMYEPEIYINXXXXXXXXXXXXXXFVESSPTKVFDINANTQQVYIYDAEAYTYDDEVLKK 735
           F YEPEI+IN              +++SSPTKVF+++  +QQV + D EAYTYD+EVLKK
Sbjct: 191 FQYEPEIHINEALMETLTLEEKQEWIDSSPTKVFELDPVSQQVVVVDPEAYTYDEEVLKK 250

Query: 736 AEAMGKPGLVEIHAKEDSFIFTVETTGAIKASQLFLNAIEVLKQKLDAVRLSADTVEADE 915
           AEAMGKPGLVEI++KEDSFIFTVE+TGAIKASQ+FLNAIE+LK KLDAVRLS DT EAD+
Sbjct: 251 AEAMGKPGLVEIYSKEDSFIFTVESTGAIKASQMFLNAIEILKSKLDAVRLSFDTEEADD 310

Query: 916 QFGELGAHMRGG 951
           QFGELGAHMRGG
Sbjct: 311 QFGELGAHMRGG 322



 Score =  191 bits (485), Expect(2) = e-118
 Identities = 88/112 (78%), Positives = 101/112 (90%)
 Frame = +3

Query: 54  VSYQRFPKIKIRTVRDDFMKFELRETDASIANALRRVMIAEVPTIAIDLVEIEVNSSVLN 233
           VSYQRFP ++IR ++DD +KFELR+TDASIANALRR+MIAEVPT+AIDLVEIE NSSVLN
Sbjct: 4   VSYQRFPTVRIRDIKDDVLKFELRDTDASIANALRRIMIAEVPTLAIDLVEIESNSSVLN 63

Query: 234 DEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIND 389
           DEF+AHRLGLIP+ S+RAM MR SRDCDACDGDG+CEYCS+EFHL  KC  D
Sbjct: 64  DEFLAHRLGLIPIVSDRAMEMRLSRDCDACDGDGRCEYCSIEFHLSVKCTGD 115


>ref|XP_002960614.1| hypothetical protein SELMODRAFT_75337 [Selaginella moellendorffii]
           gi|300171553|gb|EFJ38153.1| hypothetical protein
           SELMODRAFT_75337 [Selaginella moellendorffii]
          Length = 320

 Score =  249 bits (637), Expect(2) = e-113
 Identities = 127/189 (67%), Positives = 151/189 (79%), Gaps = 1/189 (0%)
 Frame = +1

Query: 388 IXPVDFPDSSTGLDNADNR-GIIIVKLRRGQELGLRAIARKGIGKDHAKWSPAATVTFMY 564
           + PVD       ++N + + GI+IVKLR+GQEL LRAIARKGI KDHAKWSPAATVTF Y
Sbjct: 131 VVPVDSIGHDPDIENFNQKKGILIVKLRKGQELKLRAIARKGIAKDHAKWSPAATVTFQY 190

Query: 565 EPEIYINXXXXXXXXXXXXXXFVESSPTKVFDINANTQQVYIYDAEAYTYDDEVLKKAEA 744
           EP+I+IN              +V+SSPTKVF+IN  TQQV + D EAYTYDDEV+KKAEA
Sbjct: 191 EPDIHINENLMETLSVEEKREWVDSSPTKVFEINPETQQVEVIDPEAYTYDDEVIKKAEA 250

Query: 745 MGKPGLVEIHAKEDSFIFTVETTGAIKASQLFLNAIEVLKQKLDAVRLSADTVEADEQFG 924
           MGKPGLVEI+ KEDSFIFTVE+TGAIKA+Q+FLNAIE+L+ KLDAV+L+  + EADEQFG
Sbjct: 251 MGKPGLVEIYGKEDSFIFTVESTGAIKAAQMFLNAIEILRSKLDAVKLNFGSDEADEQFG 310

Query: 925 ELGAHMRGG 951
           +LGAHMRGG
Sbjct: 311 DLGAHMRGG 319



 Score =  186 bits (473), Expect(2) = e-113
 Identities = 86/111 (77%), Positives = 102/111 (91%)
 Frame = +3

Query: 57  SYQRFPKIKIRTVRDDFMKFELRETDASIANALRRVMIAEVPTIAIDLVEIEVNSSVLND 236
           SYQRFP ++IR ++DDF+KFELR+TDASIANALRRV+IAEVPT+AIDLVEIE NSSVLND
Sbjct: 4   SYQRFPTVRIRDLKDDFLKFELRDTDASIANALRRVIIAEVPTLAIDLVEIEANSSVLND 63

Query: 237 EFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIND 389
           EFIAHRLGLIPLTS++AM MR+SRDCD CDGDG+C+YCS+EF L  KC ++
Sbjct: 64  EFIAHRLGLIPLTSDKAMEMRYSRDCDECDGDGRCDYCSIEFTLSVKCTSE 114


>ref|XP_002983424.1| hypothetical protein SELMODRAFT_180179 [Selaginella moellendorffii]
           gi|300149109|gb|EFJ15766.1| hypothetical protein
           SELMODRAFT_180179 [Selaginella moellendorffii]
          Length = 320

 Score =  249 bits (637), Expect(2) = e-113
 Identities = 127/189 (67%), Positives = 151/189 (79%), Gaps = 1/189 (0%)
 Frame = +1

Query: 388 IXPVDFPDSSTGLDNADNR-GIIIVKLRRGQELGLRAIARKGIGKDHAKWSPAATVTFMY 564
           + PVD       ++N + + GI+IVKLR+GQEL LRAIARKGI KDHAKWSPAATVTF Y
Sbjct: 131 VVPVDSIGHDPDIENFNQKKGILIVKLRKGQELKLRAIARKGIAKDHAKWSPAATVTFQY 190

Query: 565 EPEIYINXXXXXXXXXXXXXXFVESSPTKVFDINANTQQVYIYDAEAYTYDDEVLKKAEA 744
           EP+I+IN              +V+SSPTKVF+IN  TQQV + D EAYTYDDEV+KKAEA
Sbjct: 191 EPDIHINENLMETLSLEEKREWVDSSPTKVFEINPETQQVEVVDPEAYTYDDEVIKKAEA 250

Query: 745 MGKPGLVEIHAKEDSFIFTVETTGAIKASQLFLNAIEVLKQKLDAVRLSADTVEADEQFG 924
           MGKPGLVEI+ KEDSFIFTVE+TGAIKA+Q+FLNAIE+L+ KLDAV+L+  + EADEQFG
Sbjct: 251 MGKPGLVEIYGKEDSFIFTVESTGAIKAAQMFLNAIEILRSKLDAVKLNFGSDEADEQFG 310

Query: 925 ELGAHMRGG 951
           +LGAHMRGG
Sbjct: 311 DLGAHMRGG 319



 Score =  186 bits (473), Expect(2) = e-113
 Identities = 86/111 (77%), Positives = 102/111 (91%)
 Frame = +3

Query: 57  SYQRFPKIKIRTVRDDFMKFELRETDASIANALRRVMIAEVPTIAIDLVEIEVNSSVLND 236
           SYQRFP ++IR ++DDF+KFELR+TDASIANALRRV+IAEVPT+AIDLVEIE NSSVLND
Sbjct: 4   SYQRFPTVRIRDLKDDFLKFELRDTDASIANALRRVIIAEVPTLAIDLVEIEANSSVLND 63

Query: 237 EFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIND 389
           EFIAHRLGLIPLTS++AM MR+SRDCD CDGDG+C+YCS+EF L  KC ++
Sbjct: 64  EFIAHRLGLIPLTSDKAMEMRYSRDCDECDGDGRCDYCSIEFTLSVKCTSE 114


>gb|ADE77570.1| unknown [Picea sitchensis]
          Length = 330

 Score =  245 bits (626), Expect(2) = e-111
 Identities = 124/188 (65%), Positives = 148/188 (78%)
 Frame = +1

Query: 388 IXPVDFPDSSTGLDNADNRGIIIVKLRRGQELGLRAIARKGIGKDHAKWSPAATVTFMYE 567
           +  VD        D ++ RGIIIVKLRRGQEL LRAIARKGIGKDHAKWSPAATVTFMYE
Sbjct: 140 VVAVDRAADMNVFDASEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 199

Query: 568 PEIYINXXXXXXXXXXXXXXFVESSPTKVFDINANTQQVYIYDAEAYTYDDEVLKKAEAM 747
           P+I+IN              ++ES PTKVFDI+ +TQQV++ DAEAY+YDDEV+KKAEAM
Sbjct: 200 PDIHINENLMETLTLDEKREWIESCPTKVFDIHPDTQQVFVVDAEAYSYDDEVIKKAEAM 259

Query: 748 GKPGLVEIHAKEDSFIFTVETTGAIKASQLFLNAIEVLKQKLDAVRLSADTVEADEQFGE 927
           GKPGLV I+AK+DSFIFT+E+TGA+KASQ+ LNAI++LKQKL+ VRLS +T E D QF +
Sbjct: 260 GKPGLVSINAKDDSFIFTIESTGALKASQMLLNAIDILKQKLETVRLSPETEEDDAQFID 319

Query: 928 LGAHMRGG 951
           L  HMRGG
Sbjct: 320 LEQHMRGG 327



 Score =  184 bits (467), Expect(2) = e-111
 Identities = 89/111 (80%), Positives = 95/111 (85%)
 Frame = +3

Query: 57  SYQRFPKIKIRTVRDDFMKFELRETDASIANALRRVMIAEVPTIAIDLVEIEVNSSVLND 236
           SYQRFP +KIR ++DD+MKFEL+ TD SIANALRRVMI EVPTIAIDLVEIE NSSVLND
Sbjct: 10  SYQRFPTVKIREMKDDYMKFELKNTDPSIANALRRVMIGEVPTIAIDLVEIESNSSVLND 69

Query: 237 EFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIND 389
           EF+AHRLGLIPL SERAM MRFSRDCD CDGD QC YCSVEF L  KC  D
Sbjct: 70  EFLAHRLGLIPLISERAMDMRFSRDCDTCDGDAQCHYCSVEFKLNVKCDGD 120


>ref|XP_003576823.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Brachypodium distachyon]
          Length = 330

 Score =  227 bits (578), Expect(2) = e-107
 Identities = 124/185 (67%), Positives = 139/185 (75%)
 Frame = +1

Query: 388 IXPVDFPDSSTGLDNADNRGIIIVKLRRGQELGLRAIARKGIGKDHAKWSPAATVTFMYE 567
           I   D  D+ST    +D+RGI+IVKLRRGQEL LRAIARKGI KDHAKWSPAATVTFMYE
Sbjct: 150 IGTADPYDTSTA---SDHRGILIVKLRRGQELRLRAIARKGIAKDHAKWSPAATVTFMYE 206

Query: 568 PEIYINXXXXXXXXXXXXXXFVESSPTKVFDINANTQQVYIYDAEAYTYDDEVLKKAEAM 747
           P+I IN              +VESSPTKVFDI+ NTQQV + D EAYTYDDEV+KKAEAM
Sbjct: 207 PDIRINEELMETLTLEEKTSWVESSPTKVFDIDPNTQQVVVVDREAYTYDDEVIKKAEAM 266

Query: 748 GKPGLVEIHAKEDSFIFTVETTGAIKASQLFLNAIEVLKQKLDAVRLSADTVEADEQFGE 927
           GKPGL+EI AKEDSF+FTVETTGAI A +L +NAI VL+QKLDAVRL     E D  F  
Sbjct: 267 GKPGLIEISAKEDSFVFTVETTGAITAYELIINAITVLRQKLDAVRLQ----EEDGDFTG 322

Query: 928 LGAHM 942
           L AH+
Sbjct: 323 LDAHL 327



 Score =  189 bits (481), Expect(2) = e-107
 Identities = 90/109 (82%), Positives = 101/109 (92%)
 Frame = +3

Query: 51  GVSYQRFPKIKIRTVRDDFMKFELRETDASIANALRRVMIAEVPTIAIDLVEIEVNSSVL 230
           GVSYQRFP+++IR ++DD+ KFELR+TDAS+ANALRRVMIAEVPT+AIDLVEIE NSSVL
Sbjct: 7   GVSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVL 66

Query: 231 NDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAK 377
           NDEFIAHRLGLIPLTS  AM MRFSRDCDACDGDG CE+CSVEFHL A+
Sbjct: 67  NDEFIAHRLGLIPLTSSGAMGMRFSRDCDACDGDGSCEHCSVEFHLAAR 115


>ref|XP_004956290.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Setaria italica]
          Length = 325

 Score =  224 bits (570), Expect(2) = e-106
 Identities = 122/179 (68%), Positives = 136/179 (75%)
 Frame = +1

Query: 412 SSTGLDNADNRGIIIVKLRRGQELGLRAIARKGIGKDHAKWSPAATVTFMYEPEIYINXX 591
           S    D    RGI+IVKLRRGQEL LRAIARKGIGKDHAKWSPAATVTFMYEP+I IN  
Sbjct: 151 SGNDYDPNAERGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDILINEE 210

Query: 592 XXXXXXXXXXXXFVESSPTKVFDINANTQQVYIYDAEAYTYDDEVLKKAEAMGKPGLVEI 771
                       +VESSPTKVFD++AN + V + DAEAYTYDDEV+KKAEAMGKPGLVEI
Sbjct: 211 LMDTLTFDEKRSWVESSPTKVFDLSANGK-VTVCDAEAYTYDDEVIKKAEAMGKPGLVEI 269

Query: 772 HAKEDSFIFTVETTGAIKASQLFLNAIEVLKQKLDAVRLSADTVEADEQFGELGAHMRG 948
           +AKEDSFIFTVETTGAI A +L +NAI VL+QKLDA+ L  D    D   GELGAH+ G
Sbjct: 270 NAKEDSFIFTVETTGAITAYELIMNAITVLRQKLDAIGLQDD----DGDLGELGAHLGG 324



 Score =  189 bits (481), Expect(2) = e-106
 Identities = 91/109 (83%), Positives = 101/109 (92%)
 Frame = +3

Query: 51  GVSYQRFPKIKIRTVRDDFMKFELRETDASIANALRRVMIAEVPTIAIDLVEIEVNSSVL 230
           G SYQRFP+++IR ++DD+ KFELR+TDASIANALRRVMIAEVPT+AIDLVEIEVNSSVL
Sbjct: 7   GSSYQRFPRVRIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVL 66

Query: 231 NDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAK 377
           NDEFIAHRLGLIPLTS  AM MRFSRDCDACDGDG CEYCSVEF+L A+
Sbjct: 67  NDEFIAHRLGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFNLSAR 115


>gb|EMS46394.1| DNA-directed RNA polymerase II subunit RPB3-A [Triticum urartu]
          Length = 315

 Score =  225 bits (574), Expect(2) = e-101
 Identities = 124/194 (63%), Positives = 140/194 (72%), Gaps = 6/194 (3%)
 Frame = +1

Query: 388 IXPVDFPDSSTGLDNADNR------GIIIVKLRRGQELGLRAIARKGIGKDHAKWSPAAT 549
           + PVD  D++      D        GI+IVKLR GQEL LRAIARKGIGKDHAKWSPAAT
Sbjct: 126 VCPVDQADAAGDSRQVDRALHYGPLGILIVKLRCGQELRLRAIARKGIGKDHAKWSPAAT 185

Query: 550 VTFMYEPEIYINXXXXXXXXXXXXXXFVESSPTKVFDINANTQQVYIYDAEAYTYDDEVL 729
           VTFMYEP+I IN              +VESSPTKVFDI+  TQQV + D EAYTYDDEV+
Sbjct: 186 VTFMYEPDICINEELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTVVDPEAYTYDDEVI 245

Query: 730 KKAEAMGKPGLVEIHAKEDSFIFTVETTGAIKASQLFLNAIEVLKQKLDAVRLSADTVEA 909
           KKAEAMGKPGLVEI+AKEDSF+FTVETTGAI A +L +NAI VL+QKLDA+RL  D    
Sbjct: 246 KKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDAIRLQDD---- 301

Query: 910 DEQFGELGAHMRGG 951
           D   GEL AH+ GG
Sbjct: 302 DGDLGELDAHLVGG 315



 Score =  171 bits (434), Expect(2) = e-101
 Identities = 84/104 (80%), Positives = 94/104 (90%), Gaps = 1/104 (0%)
 Frame = +3

Query: 51  GVSYQRFPKIKIRTVRDDFMKFELRETDASIANALRRVMIAEVPTIAIDLVEIEVNSSVL 230
           G SYQRFP+++IR +RD++ KFELR+TDAS+ANALRRVMIAEVPT+AIDLVEIE NSSVL
Sbjct: 7   GASYQRFPRVRIRELRDEYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVL 66

Query: 231 NDEFIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEYCSVE 359
            DEFIAHRLGLIPLTS  AM AMRFSRDCDACDGDG CE CS+E
Sbjct: 67  TDEFIAHRLGLIPLTSSAAMSAMRFSRDCDACDGDGSCEDCSIE 110


>gb|EMJ01858.1| hypothetical protein PRUPE_ppa016873mg [Prunus persica]
          Length = 290

 Score =  201 bits (510), Expect(2) = 2e-91
 Identities = 112/189 (59%), Positives = 127/189 (67%)
 Frame = +1

Query: 385 TIXPVDFPDSSTGLDNADNRGIIIVKLRRGQELGLRAIARKGIGKDHAKWSPAATVTFMY 564
           T+ PVDF DS+                  G E   +      + K     S AATVTFMY
Sbjct: 120 TVVPVDFSDSA------------------GMESSKQKDNHCEVAKGARADSSAATVTFMY 161

Query: 565 EPEIYINXXXXXXXXXXXXXXFVESSPTKVFDINANTQQVYIYDAEAYTYDDEVLKKAEA 744
           EP+I IN              +VESSPTKVFD +  T++V + D EAYTYDDEV+KKAEA
Sbjct: 162 EPDIQINEELMDMLTLDEKKAWVESSPTKVFDFDPKTEKVVVVDPEAYTYDDEVIKKAEA 221

Query: 745 MGKPGLVEIHAKEDSFIFTVETTGAIKASQLFLNAIEVLKQKLDAVRLSADTVEADEQFG 924
           MGKPGLV+I AKEDSFIFTVE+TGA+KASQL LNAIEVL QKLDAVRLS DTVEAD+QFG
Sbjct: 222 MGKPGLVDIIAKEDSFIFTVESTGAVKASQLLLNAIEVLNQKLDAVRLSEDTVEADDQFG 281

Query: 925 ELGAHMRGG 951
           ELGAHMRGG
Sbjct: 282 ELGAHMRGG 290



 Score =  163 bits (413), Expect(2) = 2e-91
 Identities = 79/113 (69%), Positives = 94/113 (83%)
 Frame = +3

Query: 51  GVSYQRFPKIKIRTVRDDFMKFELRETDASIANALRRVMIAEVPTIAIDLVEIEVNSSVL 230
           G SYQR  ++KIR +RDD+MKFELR+ DAS+ANALRRVMIAEVPT+AIDLVEI++NS   
Sbjct: 3   GKSYQRLLRVKIREMRDDYMKFELRDADASVANALRRVMIAEVPTVAIDLVEIQINS--- 59

Query: 231 NDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIND 389
                   LGLIPLTS++AM+MRFS DCD+CDGDGQCE+CSVEFHLR KC +D
Sbjct: 60  --------LGLIPLTSDQAMSMRFSSDCDSCDGDGQCEFCSVEFHLRGKCHSD 104


>gb|EOX98333.1| DNA-directed RNA polymerase family protein [Theobroma cacao]
          Length = 318

 Score =  292 bits (748), Expect = 2e-76
 Identities = 155/201 (77%), Positives = 169/201 (84%)
 Frame = +1

Query: 349 VPSSSIYAPSALTIXPVDFPDSSTGLDNADNRGIIIVKLRRGQELGLRAIARKGIGKDHA 528
           V S  +Y+ S  T+ PVDF DS+ G D+++ RGIIIVKLRRGQEL LRAIARKGIGKDHA
Sbjct: 120 VTSKDLYS-SDHTVVPVDFTDSA-GYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHA 177

Query: 529 KWSPAATVTFMYEPEIYINXXXXXXXXXXXXXXFVESSPTKVFDINANTQQVYIYDAEAY 708
           KWSPAATVTFMYEPEI+IN              FVESSPT+VFDI+ NTQQV + D EAY
Sbjct: 178 KWSPAATVTFMYEPEIHINEDMMETLTLEEKQSFVESSPTRVFDIDPNTQQVVVVDPEAY 237

Query: 709 TYDDEVLKKAEAMGKPGLVEIHAKEDSFIFTVETTGAIKASQLFLNAIEVLKQKLDAVRL 888
           TYDDEVLKKAEAMGKPGLVEI+AKEDSFIFTVE+TGAIKASQL LNAIEVLKQKLDAVRL
Sbjct: 238 TYDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRL 297

Query: 889 SADTVEADEQFGELGAHMRGG 951
           S DTVEAD+QFGELGAHMRGG
Sbjct: 298 SEDTVEADDQFGELGAHMRGG 318



 Score =  211 bits (538), Expect = 4e-52
 Identities = 101/113 (89%), Positives = 110/113 (97%)
 Frame = +3

Query: 51  GVSYQRFPKIKIRTVRDDFMKFELRETDASIANALRRVMIAEVPTIAIDLVEIEVNSSVL 230
           GVSYQRFPK+KIR ++DD+ KFELR+TDAS+ANALRRVMIAEVPTIAIDLVEIEVNSSVL
Sbjct: 3   GVSYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62

Query: 231 NDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIND 389
           NDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLRAKC+ D
Sbjct: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTD 115


>emb|CBI40277.3| unnamed protein product [Vitis vinifera]
          Length = 206

 Score =  291 bits (746), Expect = 3e-76
 Identities = 152/189 (80%), Positives = 165/189 (87%)
 Frame = +1

Query: 385 TIXPVDFPDSSTGLDNADNRGIIIVKLRRGQELGLRAIARKGIGKDHAKWSPAATVTFMY 564
           T+ PVDF DSS G D+AD +GIIIVKLRRGQEL LRAIARKGIGKDHAKWSPAATVTFMY
Sbjct: 19  TVVPVDFSDSS-GYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 77

Query: 565 EPEIYINXXXXXXXXXXXXXXFVESSPTKVFDINANTQQVYIYDAEAYTYDDEVLKKAEA 744
           EPEI+IN              +VESSPTKVFDI+A++QQV + DAEAYTYDDEVLKKAEA
Sbjct: 78  EPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEVLKKAEA 137

Query: 745 MGKPGLVEIHAKEDSFIFTVETTGAIKASQLFLNAIEVLKQKLDAVRLSADTVEADEQFG 924
           MGKPGLVEI+AKEDSFIFTVE+TGAIKASQL LNAI+VLKQKLDAVRLS DTVEAD+QFG
Sbjct: 138 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVEADDQFG 197

Query: 925 ELGAHMRGG 951
           ELGAHMRGG
Sbjct: 198 ELGAHMRGG 206


>dbj|BAN19962.1| RNA polymerase II, partial [Echinochloa phyllopogon]
          Length = 257

 Score =  227 bits (578), Expect(2) = 1e-75
 Identities = 122/177 (68%), Positives = 137/177 (77%), Gaps = 1/177 (0%)
 Frame = +1

Query: 421 GLDNADNRGIIIVKLRRGQELGLRAIARKGIGKDHAKWSPAATVTFMYEPEIYINXXXXX 600
           G D  + RGI+IVKLRRGQEL LRAIARKGIGKDHAKWSPAATVTFMYEP+I IN     
Sbjct: 84  GFDPNEQRGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIRINEELMD 143

Query: 601 XXXXXXXXXFVESSPTKVFDINANTQQVYIYD-AEAYTYDDEVLKKAEAMGKPGLVEIHA 777
                    ++ESSPTKVF+++  TQQV + D  EAYTYDDEV+KKAEAMGKPGLVEI+A
Sbjct: 144 TLTLDEKRSWIESSPTKVFELDNVTQQVTVVDNGEAYTYDDEVIKKAEAMGKPGLVEINA 203

Query: 778 KEDSFIFTVETTGAIKASQLFLNAIEVLKQKLDAVRLSADTVEADEQFGELGAHMRG 948
           KEDSFIFTVETTGAI A +L +NAI VL+QKLDAVRL  D    D   GELGAH+ G
Sbjct: 204 KEDSFIFTVETTGAITAYELIMNAITVLRQKLDAVRLQDD----DGDLGELGAHLGG 256



 Score = 85.1 bits (209), Expect(2) = 1e-75
 Identities = 38/49 (77%), Positives = 42/49 (85%)
 Frame = +3

Query: 243 IAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIND 389
           IAHRLGLIPLTS  AM MRFSRDCDACDGDG CE+CSVEF+L A+  +D
Sbjct: 1   IAHRLGLIPLTSSAAMQMRFSRDCDACDGDGSCEFCSVEFNLHARAESD 49


>ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citrus clementina]
           gi|568867393|ref|XP_006487022.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 3-like [Citrus
           sinensis] gi|557524889|gb|ESR36195.1| hypothetical
           protein CICLE_v10028849mg [Citrus clementina]
          Length = 319

 Score =  286 bits (731), Expect = 2e-74
 Identities = 154/202 (76%), Positives = 168/202 (83%), Gaps = 1/202 (0%)
 Frame = +1

Query: 349 VPSSSIYAPSALTIXPVDFPDSSTGLDNADN-RGIIIVKLRRGQELGLRAIARKGIGKDH 525
           V S  +Y+ S  ++ PVDF D + G D+ D  RGIIIVKLRRGQEL LRAIARKGIGKDH
Sbjct: 120 VTSKDLYS-SDHSVVPVDFVDPA-GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDH 177

Query: 526 AKWSPAATVTFMYEPEIYINXXXXXXXXXXXXXXFVESSPTKVFDINANTQQVYIYDAEA 705
           AKWSPAATVTFMYEPEI+IN              +VESSPTKVFDI+ NT QVY+ DAEA
Sbjct: 178 AKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEA 237

Query: 706 YTYDDEVLKKAEAMGKPGLVEIHAKEDSFIFTVETTGAIKASQLFLNAIEVLKQKLDAVR 885
           YTYDDEV+KKAEAMGKPGLVEI+AKEDSFIFTVE+TGAIKASQL LNAIEVLKQKLDAVR
Sbjct: 238 YTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297

Query: 886 LSADTVEADEQFGELGAHMRGG 951
           LS DTVEAD+QFGELGAHMRGG
Sbjct: 298 LSEDTVEADDQFGELGAHMRGG 319



 Score =  209 bits (531), Expect = 2e-51
 Identities = 100/113 (88%), Positives = 109/113 (96%)
 Frame = +3

Query: 51  GVSYQRFPKIKIRTVRDDFMKFELRETDASIANALRRVMIAEVPTIAIDLVEIEVNSSVL 230
           G SYQRFPK+KIR ++DD+ KFELR+TDAS+ANALRRVMIAEVPTIAIDLVEIEVNSSVL
Sbjct: 3   GASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62

Query: 231 NDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIND 389
           NDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLRAKC +D
Sbjct: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSD 115


>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
           gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
           II subunit, putative [Ricinus communis]
          Length = 318

 Score =  285 bits (729), Expect = 3e-74
 Identities = 150/201 (74%), Positives = 167/201 (83%)
 Frame = +1

Query: 349 VPSSSIYAPSALTIXPVDFPDSSTGLDNADNRGIIIVKLRRGQELGLRAIARKGIGKDHA 528
           V S  +Y+ S  T+ PVDF DSS G D+++ RGIIIVKLRRGQEL LRAIARKGIGKDHA
Sbjct: 120 VTSKDLYS-SDHTVVPVDFSDSS-GYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHA 177

Query: 529 KWSPAATVTFMYEPEIYINXXXXXXXXXXXXXXFVESSPTKVFDINANTQQVYIYDAEAY 708
           KWSPAATVTFMYEP+I+IN              +VESSPTKVFDI+ NTQQV + D EAY
Sbjct: 178 KWSPAATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAY 237

Query: 709 TYDDEVLKKAEAMGKPGLVEIHAKEDSFIFTVETTGAIKASQLFLNAIEVLKQKLDAVRL 888
           TYD+EV+KKAE+MGKPGLV I AKEDSFIFTVE+TGAIKASQL LNAIE+LKQKLDAVRL
Sbjct: 238 TYDEEVIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRL 297

Query: 889 SADTVEADEQFGELGAHMRGG 951
           S DTVEAD+QFGELGAHMRGG
Sbjct: 298 SEDTVEADDQFGELGAHMRGG 318



 Score =  210 bits (535), Expect = 8e-52
 Identities = 100/113 (88%), Positives = 109/113 (96%)
 Frame = +3

Query: 51  GVSYQRFPKIKIRTVRDDFMKFELRETDASIANALRRVMIAEVPTIAIDLVEIEVNSSVL 230
           G SYQRFP+IKIR ++DD+ KFELR+TDAS+ANALRRVMIAEVPT+AIDLVEIEVNSSVL
Sbjct: 3   GASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 62

Query: 231 NDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIND 389
           NDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQC+YCSVEFHLRAKCI D
Sbjct: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITD 115