BLASTX nr result
ID: Rehmannia24_contig00000034
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00000034
(575 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 261 8e-92
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 260 4e-91
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 260 4e-91
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 260 4e-91
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 260 4e-91
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 260 4e-91
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 260 4e-91
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 260 4e-91
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a... 257 3e-89
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 239 6e-85
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 229 5e-78
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 189 2e-63
gb|AAC54780.1| ORF [Cassava common mosaic virus] 189 2e-63
gb|ACS28228.1| replicase [Alternanthera mosaic virus] 169 4e-54
gb|ACS28233.1| replicase [Alternanthera mosaic virus] 168 7e-54
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai... 168 7e-54
ref|YP_054402.1| replication-associated protein [Zygocactus viru... 173 9e-54
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082... 167 1e-53
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2... 174 1e-52
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus] 178 1e-52
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 261 bits (668), Expect(2) = 8e-92
Identities = 125/135 (92%), Positives = 131/135 (97%)
Frame = +3
Query: 171 PRSVRHHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAH 350
P ++ HTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR+FHRGPTHGDFFLNAH
Sbjct: 60 PYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRYFHRGPTHGDFFLNAH 119
Query: 351 VEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP 530
VEPKDVPRYPQDTV++RLENI T+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP
Sbjct: 120 VEPKDVPRYPQDTVLNRLENISTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP 179
Query: 531 PEALYRLRSLYPQIY 575
PEALYRLRSLYPQIY
Sbjct: 180 PEALYRLRSLYPQIY 194
Score = 102 bits (253), Expect(2) = 8e-92
Identities = 50/54 (92%), Positives = 54/54 (100%)
Frame = +1
Query: 28 SVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGI 189
+VRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRH+NPFAQ+P+AADALEALGI
Sbjct: 3 NVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHTNPFAQSPDAADALEALGI 56
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 260 bits (665), Expect(2) = 4e-91
Identities = 125/135 (92%), Positives = 129/135 (95%)
Frame = +3
Query: 171 PRSVRHHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAH 350
P ++ HTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAH
Sbjct: 60 PYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAH 119
Query: 351 VEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP 530
VEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP
Sbjct: 120 VEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP 179
Query: 531 PEALYRLRSLYPQIY 575
PEALYRLRSLYPQIY
Sbjct: 180 PEALYRLRSLYPQIY 194
Score = 100 bits (250), Expect(2) = 4e-91
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = +1
Query: 28 SVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGI 189
+VRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGI
Sbjct: 3 NVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGI 56
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 260 bits (665), Expect(2) = 4e-91
Identities = 125/135 (92%), Positives = 129/135 (95%)
Frame = +3
Query: 171 PRSVRHHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAH 350
P ++ HTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAH
Sbjct: 60 PYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAH 119
Query: 351 VEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP 530
VEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP
Sbjct: 120 VEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP 179
Query: 531 PEALYRLRSLYPQIY 575
PEALYRLRSLYPQIY
Sbjct: 180 PEALYRLRSLYPQIY 194
Score = 100 bits (250), Expect(2) = 4e-91
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = +1
Query: 28 SVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGI 189
+VRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGI
Sbjct: 3 NVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGI 56
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 260 bits (665), Expect(2) = 4e-91
Identities = 125/135 (92%), Positives = 129/135 (95%)
Frame = +3
Query: 171 PRSVRHHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAH 350
P ++ HTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAH
Sbjct: 60 PYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAH 119
Query: 351 VEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP 530
VEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP
Sbjct: 120 VEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP 179
Query: 531 PEALYRLRSLYPQIY 575
PEALYRLRSLYPQIY
Sbjct: 180 PEALYRLRSLYPQIY 194
Score = 100 bits (250), Expect(2) = 4e-91
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = +1
Query: 28 SVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGI 189
+VRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGI
Sbjct: 3 NVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGI 56
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 260 bits (665), Expect(2) = 4e-91
Identities = 125/135 (92%), Positives = 129/135 (95%)
Frame = +3
Query: 171 PRSVRHHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAH 350
P ++ HTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAH
Sbjct: 60 PYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAH 119
Query: 351 VEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP 530
VEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP
Sbjct: 120 VEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP 179
Query: 531 PEALYRLRSLYPQIY 575
PEALYRLRSLYPQIY
Sbjct: 180 PEALYRLRSLYPQIY 194
Score = 100 bits (250), Expect(2) = 4e-91
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = +1
Query: 28 SVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGI 189
+VRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGI
Sbjct: 3 NVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGI 56
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 260 bits (665), Expect(2) = 4e-91
Identities = 125/135 (92%), Positives = 129/135 (95%)
Frame = +3
Query: 171 PRSVRHHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAH 350
P ++ HTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAH
Sbjct: 60 PYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAH 119
Query: 351 VEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP 530
VEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP
Sbjct: 120 VEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP 179
Query: 531 PEALYRLRSLYPQIY 575
PEALYRLRSLYPQIY
Sbjct: 180 PEALYRLRSLYPQIY 194
Score = 100 bits (250), Expect(2) = 4e-91
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = +1
Query: 28 SVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGI 189
+VRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGI
Sbjct: 3 NVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGI 56
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 260 bits (665), Expect(2) = 4e-91
Identities = 125/135 (92%), Positives = 129/135 (95%)
Frame = +3
Query: 171 PRSVRHHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAH 350
P ++ HTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAH
Sbjct: 60 PYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAH 119
Query: 351 VEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP 530
VEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP
Sbjct: 120 VEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP 179
Query: 531 PEALYRLRSLYPQIY 575
PEALYRLRSLYPQIY
Sbjct: 180 PEALYRLRSLYPQIY 194
Score = 100 bits (250), Expect(2) = 4e-91
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = +1
Query: 28 SVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGI 189
+VRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGI
Sbjct: 3 NVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGI 56
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 260 bits (665), Expect(2) = 4e-91
Identities = 125/135 (92%), Positives = 129/135 (95%)
Frame = +3
Query: 171 PRSVRHHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAH 350
P ++ HTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAH
Sbjct: 60 PYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAH 119
Query: 351 VEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP 530
VEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP
Sbjct: 120 VEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP 179
Query: 531 PEALYRLRSLYPQIY 575
PEALYRLRSLYPQIY
Sbjct: 180 PEALYRLRSLYPQIY 194
Score = 100 bits (250), Expect(2) = 4e-91
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = +1
Query: 28 SVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGI 189
+VRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGI
Sbjct: 3 NVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGI 56
>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 669
Score = 257 bits (657), Expect(2) = 3e-89
Identities = 123/135 (91%), Positives = 129/135 (95%)
Frame = +3
Query: 171 PRSVRHHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAH 350
P ++ HTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAH
Sbjct: 60 PYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAH 119
Query: 351 VEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP 530
VEPKDVPRYPQ+T+I RLENIPTNIAF+GDTLHFLSPSFVTALFAHSPKLQTLYATLVLP
Sbjct: 120 VEPKDVPRYPQETIIKRLENIPTNIAFIGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP 179
Query: 531 PEALYRLRSLYPQIY 575
PEALYRLRSL+PQIY
Sbjct: 180 PEALYRLRSLHPQIY 194
Score = 97.8 bits (242), Expect(2) = 3e-89
Identities = 48/54 (88%), Positives = 52/54 (96%)
Frame = +1
Query: 28 SVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGI 189
+VRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQ+PEAADALE LGI
Sbjct: 3 NVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQSPEAADALEVLGI 56
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 239 bits (610), Expect(2) = 6e-85
Identities = 116/135 (85%), Positives = 124/135 (91%)
Frame = +3
Query: 171 PRSVRHHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAH 350
P ++ HTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGD FLNAH
Sbjct: 60 PYAITSHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDHFLNAH 119
Query: 351 VEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP 530
VEPKDVPRYPQ+T+I+RL +IPT IAFMGDTLHFLSPSF+TALFAHSP+LQTLYATLVLP
Sbjct: 120 VEPKDVPRYPQETIINRLADIPTQIAFMGDTLHFLSPSFLTALFAHSPRLQTLYATLVLP 179
Query: 531 PEALYRLRSLYPQIY 575
PE RSLYPQIY
Sbjct: 180 PEP-STSRSLYPQIY 193
Score = 101 bits (251), Expect(2) = 6e-85
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = +1
Query: 28 SVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGI 189
+VRNVFSQLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQ+PEAADALEALGI
Sbjct: 3 NVRNVFSQLTDPSLKAVIQDEAYRVLKRELAQTRHTNPFAQSPEAADALEALGI 56
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 229 bits (583), Expect(2) = 5e-78
Identities = 105/135 (77%), Positives = 119/135 (88%)
Frame = +3
Query: 171 PRSVRHHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAH 350
P ++ HTHAAAKAIESDLYEV SHYLPKENPV+FLFMKP+KLR+FHRGP H D FLNA+
Sbjct: 60 PLAITPHTHAAAKAIESDLYEVTSHYLPKENPVTFLFMKPSKLRYFHRGPQHSDIFLNAY 119
Query: 351 VEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP 530
+EPKDVPRYP DTVI + I T +AFMGDTLHFL PSF+T+LFA SPKLQTLYAT+VLP
Sbjct: 120 IEPKDVPRYPTDTVIENISEITTPLAFMGDTLHFLEPSFITSLFARSPKLQTLYATMVLP 179
Query: 531 PEALYRLRSLYPQIY 575
PEALYRLRSLYP++Y
Sbjct: 180 PEALYRLRSLYPEVY 194
Score = 88.6 bits (218), Expect(2) = 5e-78
Identities = 42/54 (77%), Positives = 48/54 (88%)
Frame = +1
Query: 28 SVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGI 189
++RNVF+QLTDPSLKAVIQDEAYR +K+EL TRHSNPFAQ+P AAD LE LGI
Sbjct: 3 NLRNVFAQLTDPSLKAVIQDEAYRVMKKELTATRHSNPFAQSPAAADTLELLGI 56
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1
Length = 1449
Score = 189 bits (479), Expect(2) = 2e-63
Identities = 86/135 (63%), Positives = 109/135 (80%)
Frame = +3
Query: 171 PRSVRHHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAH 350
P ++ HTHAA KA+E DLY VSHYLP+++PV+F+FMKPAKL++ RGP H D F+N+
Sbjct: 60 PYAIATHTHAAGKALELDLYHSVSHYLPRKSPVTFMFMKPAKLQYLRRGPQHRDHFVNSW 119
Query: 351 VEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP 530
VEPKD+ RYP+ TV+ + I T+IAFMGDTLHFL+P FV LFA SPKL+T YAT+VLP
Sbjct: 120 VEPKDLARYPEQTVVDGIPPIQTSIAFMGDTLHFLTPKFVGTLFARSPKLKTFYATMVLP 179
Query: 531 PEALYRLRSLYPQIY 575
PEAL+++ SLYPQIY
Sbjct: 180 PEALHKMNSLYPQIY 194
Score = 79.7 bits (195), Expect(2) = 2e-63
Identities = 41/56 (73%), Positives = 47/56 (83%), Gaps = 1/56 (1%)
Frame = +1
Query: 31 VRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALG-ITH 195
VRNVFSQ+TDPSLKAVIQD++YRT+K EL Q + NP+AQT EAAD LE LG ITH
Sbjct: 4 VRNVFSQITDPSLKAVIQDDSYRTIKAELNQAKIINPYAQTGEAADLLETLGVITH 59
>gb|AAC54780.1| ORF [Cassava common mosaic virus]
Length = 300
Score = 189 bits (479), Expect(2) = 2e-63
Identities = 86/135 (63%), Positives = 109/135 (80%)
Frame = +3
Query: 171 PRSVRHHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAH 350
P ++ HTHAA KA+E DLY VSHYLP+++PV+F+FMKPAKL++ RGP H D F+N+
Sbjct: 60 PYAIATHTHAAGKALELDLYHSVSHYLPRKSPVTFMFMKPAKLQYLRRGPQHRDHFVNSW 119
Query: 351 VEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP 530
VEPKD+ RYP+ TV+ + I T+IAFMGDTLHFL+P FV LFA SPKL+T YAT+VLP
Sbjct: 120 VEPKDLARYPEQTVVDGIPPIQTSIAFMGDTLHFLTPKFVGTLFARSPKLKTFYATMVLP 179
Query: 531 PEALYRLRSLYPQIY 575
PEAL+++ SLYPQIY
Sbjct: 180 PEALHKMNSLYPQIY 194
Score = 79.7 bits (195), Expect(2) = 2e-63
Identities = 41/56 (73%), Positives = 47/56 (83%), Gaps = 1/56 (1%)
Frame = +1
Query: 31 VRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALG-ITH 195
VRNVFSQ+TDPSLKAVIQD++YRT+K EL Q + NP+AQT EAAD LE LG ITH
Sbjct: 4 VRNVFSQITDPSLKAVIQDDSYRTIKAELNQAKIINPYAQTGEAADLLETLGVITH 59
>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 169 bits (427), Expect(2) = 4e-54
Identities = 80/137 (58%), Positives = 103/137 (75%), Gaps = 2/137 (1%)
Frame = +3
Query: 171 PRSVRHHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAH 350
P SVR HTHAAAK+IE D+Y++ + LPKENP++FLFMK +KL++FHRGP HGD FLNA
Sbjct: 60 PFSVRAHTHAAAKSIELDMYKITGYSLPKENPITFLFMKRSKLQYFHRGPQHGDLFLNAC 119
Query: 351 VEPKDVPRYPQDTVI--SRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV 524
+EPKDV RY + + S I T +AF+GDTLHFL + +F S KLQTLYAT+V
Sbjct: 120 IEPKDVTRYALEDLFKPSTTPEIQTRVAFIGDTLHFLPLGAIREIFTSSQKLQTLYATMV 179
Query: 525 LPPEALYRLRSLYPQIY 575
LPPEA++R+ S++P IY
Sbjct: 180 LPPEAMHRMHSIHPSIY 196
Score = 68.9 bits (167), Expect(2) = 4e-54
Identities = 31/52 (59%), Positives = 42/52 (80%)
Frame = +1
Query: 34 RNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGI 189
R+V Q+ DPSL+AVIQ+EAYR +K+ +A+T+ NP+AQ P AAD+LE LGI
Sbjct: 5 RSVLDQMNDPSLRAVIQEEAYREIKKTIAETKQYNPYAQDPAAADSLEKLGI 56
>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 168 bits (425), Expect(2) = 7e-54
Identities = 80/137 (58%), Positives = 103/137 (75%), Gaps = 2/137 (1%)
Frame = +3
Query: 171 PRSVRHHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAH 350
P SVR HTHAAAK+IE D+Y++ + LPKENP++FLFMK +KL++FHRGP HGD FLNA
Sbjct: 60 PFSVRAHTHAAAKSIELDMYKITGYSLPKENPITFLFMKRSKLQYFHRGPQHGDLFLNAW 119
Query: 351 VEPKDVPRYPQDTVI--SRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV 524
+EPKDV RY + + S I T +AF+GDTLHFL + +F S KLQTLYAT+V
Sbjct: 120 IEPKDVTRYNLEDLFKPSITPEIQTRVAFIGDTLHFLPLGAIREIFTSSQKLQTLYATMV 179
Query: 525 LPPEALYRLRSLYPQIY 575
LPPEA++R+ S++P IY
Sbjct: 180 LPPEAMHRMHSIHPSIY 196
Score = 68.9 bits (167), Expect(2) = 7e-54
Identities = 31/52 (59%), Positives = 42/52 (80%)
Frame = +1
Query: 34 RNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGI 189
R+V Q+ DPSL+AVIQ+EAYR +K+ +A+T+ NP+AQ P AAD+LE LGI
Sbjct: 5 RSVLDQMNDPSLRAVIQEEAYREIKKTIAETKQYNPYAQDPAAADSLEKLGI 56
>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
Length = 1541
Score = 168 bits (425), Expect(2) = 7e-54
Identities = 80/137 (58%), Positives = 103/137 (75%), Gaps = 2/137 (1%)
Frame = +3
Query: 171 PRSVRHHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAH 350
P SVR HTHAAAK+IE D+Y++ + LPKENP++FLFMK +KL++FHRGP HGD FLNA
Sbjct: 60 PFSVRAHTHAAAKSIELDMYKITGYSLPKENPITFLFMKRSKLQYFHRGPQHGDLFLNAC 119
Query: 351 VEPKDVPRYPQDTVI--SRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV 524
+EPKDV RY + + S I T +AF+GDTLHFL + +F S KLQTLYAT+V
Sbjct: 120 IEPKDVTRYALEDLFKPSITPEIQTRVAFIGDTLHFLPLGAIREIFTSSQKLQTLYATMV 179
Query: 525 LPPEALYRLRSLYPQIY 575
LPPEA++R+ S++P IY
Sbjct: 180 LPPEAMHRMHSIHPSIY 196
Score = 68.9 bits (167), Expect(2) = 7e-54
Identities = 31/52 (59%), Positives = 42/52 (80%)
Frame = +1
Query: 34 RNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGI 189
R+V Q+ DPSL+AVIQ+EAYR +K+ +A+T+ NP+AQ P AAD+LE LGI
Sbjct: 5 RSVLDQMNDPSLRAVIQEEAYREIKKTIAETKQYNPYAQDPAAADSLEKLGI 56
>ref|YP_054402.1| replication-associated protein [Zygocactus virus X]
gi|38146347|gb|AAR11542.1| replication-associated
protein [Zygocactus virus X]
Length = 1543
Score = 173 bits (438), Expect(2) = 9e-54
Identities = 82/137 (59%), Positives = 105/137 (76%), Gaps = 2/137 (1%)
Frame = +3
Query: 171 PRSVRHHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAH 350
P +V HTH AAKAIE+D+Y +V++YLPKENPV+F +MK KL F RGP GD F+N+H
Sbjct: 60 PLAVEAHTHGAAKAIENDMYNIVANYLPKENPVTFYYMKKGKLGKFRRGPQQGDLFVNSH 119
Query: 351 VEPKDVPRYPQDTVISRLENIP--TNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV 524
EPKD+ RYP++T++ LE+ P T++AFMGDTLHF SP + LF SPKL+TLYAT+V
Sbjct: 120 FEPKDIARYPEETIVEHLESKPCTTSLAFMGDTLHFWSPKQLLTLFNASPKLKTLYATIV 179
Query: 525 LPPEALYRLRSLYPQIY 575
LP EA +RL SL+P IY
Sbjct: 180 LPIEATHRLPSLHPSIY 196
Score = 63.5 bits (153), Expect(2) = 9e-54
Identities = 31/53 (58%), Positives = 39/53 (73%)
Frame = +1
Query: 31 VRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGI 189
VR VFS +TD SLKAVIQ+EAY+T++ +L NP+AQ +AAD LE LGI
Sbjct: 4 VREVFSSITDSSLKAVIQEEAYKTIQTQLRLAASINPYAQPADAADVLETLGI 56
>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
replicase [Alternanthera mosaic virus]
Length = 1541
Score = 167 bits (423), Expect(2) = 1e-53
Identities = 79/137 (57%), Positives = 103/137 (75%), Gaps = 2/137 (1%)
Frame = +3
Query: 171 PRSVRHHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAH 350
P SVR HTHAAAK+IE D+Y++ + LPKENP++FLFMK +KL++FHRGP HGD FLNA
Sbjct: 60 PFSVRAHTHAAAKSIELDMYKITGYSLPKENPITFLFMKRSKLQYFHRGPQHGDLFLNAW 119
Query: 351 VEPKDVPRYPQDTVI--SRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV 524
+EPKDV RY + + S I T +AF+GDTLHFL + +F +S KL TLYAT+V
Sbjct: 120 IEPKDVTRYDLEDLFKPSITPEIQTRVAFIGDTLHFLPLGAIREIFTNSQKLHTLYATMV 179
Query: 525 LPPEALYRLRSLYPQIY 575
LPPEA++R+ S++P IY
Sbjct: 180 LPPEAMHRMHSIHPSIY 196
Score = 68.9 bits (167), Expect(2) = 1e-53
Identities = 31/52 (59%), Positives = 42/52 (80%)
Frame = +1
Query: 34 RNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGI 189
R+V Q+ DPSL+AVIQ+EAYR +K+ +A+T+ NP+AQ P AAD+LE LGI
Sbjct: 5 RSVLDQMNDPSLRAVIQEEAYREIKKTIAETKQYNPYAQDPAAADSLEKLGI 56
>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
RecName: Full=RNA replication protein; AltName: Full=176
kDa protein; AltName: Full=ORF1 protein; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
protein product [Papaya mosaic virus]
gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
virus]
Length = 1547
Score = 174 bits (442), Expect(2) = 1e-52
Identities = 85/137 (62%), Positives = 104/137 (75%), Gaps = 2/137 (1%)
Frame = +3
Query: 171 PRSVRHHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAH 350
P +V+ HTHAAAK IE D+Y++VS YLPKENP +F+FMK +KL++F RGP D FLNAH
Sbjct: 60 PFAVKAHTHAAAKTIELDMYKIVSFYLPKENPTTFMFMKRSKLQYFRRGPQQKDVFLNAH 119
Query: 351 VEPKDVPRYPQDTVISR--LENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV 524
+EPKDV RY DT+ + I TN AFMGDTLHFL + + +F SPKLQTLYAT+V
Sbjct: 120 IEPKDVARYDVDTLFDKNVTPQITTNTAFMGDTLHFLPLTAIERIFKSSPKLQTLYATMV 179
Query: 525 LPPEALYRLRSLYPQIY 575
LPPEAL+RL SL+P IY
Sbjct: 180 LPPEALHRLHSLHPGIY 196
Score = 58.2 bits (139), Expect(2) = 1e-52
Identities = 28/54 (51%), Positives = 39/54 (72%)
Frame = +1
Query: 28 SVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGI 189
++R+VF QL D SL+AVIQ+EAYR +K + +T+ NP+A AD+LE LGI
Sbjct: 3 NLRSVFEQLNDVSLRAVIQEEAYRDIKLTIKETKTYNPYAHPVAVADSLEKLGI 56
>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 178 bits (451), Expect(2) = 1e-52
Identities = 85/135 (62%), Positives = 102/135 (75%)
Frame = +3
Query: 171 PRSVRHHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAH 350
P +V HTHAAAK +E DLY VSHY+PKENPV+FLFMK AKL++F RG GD F+N
Sbjct: 60 PYAVAAHTHAAAKCLELDLYASVSHYMPKENPVTFLFMKRAKLQYFRRGTQQGDVFVNTL 119
Query: 351 VEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP 530
EPKD RYP DT+ S + I T +AFMGDTLHFL P+F+T LF SP L TLYAT+VLP
Sbjct: 120 FEPKDAARYPLDTICSAIPPIQTQMAFMGDTLHFLEPAFLTDLFDRSPHLNTLYATMVLP 179
Query: 531 PEALYRLRSLYPQIY 575
PEA ++LRSL+P +Y
Sbjct: 180 PEAKHKLRSLHPLVY 194
Score = 54.7 bits (130), Expect(2) = 1e-52
Identities = 25/53 (47%), Positives = 36/53 (67%)
Frame = +1
Query: 31 VRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGI 189
V V + ++DPSLKAVIQ+EAY++++ L +H NP+A E A+ LE GI
Sbjct: 4 VSQVLASISDPSLKAVIQEEAYKSIRTTLQAAKHLNPYAHPSETAEFLERQGI 56