BLASTX nr result

ID: Rehmannia23_contig00033353 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00033353
         (393 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004229413.1| PREDICTED: transcription regulatory protein ...    63   4e-08
ref|XP_006349214.1| PREDICTED: transcription regulatory protein ...    60   4e-07
gb|EOY05607.1| Chromatin remodeling complex subunit isoform 2 [T...    57   3e-06
gb|EOY05606.1| Chromatin remodeling complex subunit isoform 1 [T...    57   3e-06
ref|NP_187252.2| SNF2/Brahma-type chromatin-remodeling protein C...    56   6e-06
gb|AAF23228.1|AC013454_15 putative transcriptional regulator [Ar...    56   6e-06

>ref|XP_004229413.1| PREDICTED: transcription regulatory protein SNF2-like [Solanum
           lycopersicum]
          Length = 1106

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 32/57 (56%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
 Frame = +3

Query: 189 EPENPLDSAKTLICALNFLSRNLPLPQHVYDAVSSI----CQDASTDSGDDGPADLD 347
           E +  L+  KTLICALNFLSRNLP+P  V+DAVSSI      D     GD  PAD+D
Sbjct: 32  ESQEQLEKTKTLICALNFLSRNLPIPPDVFDAVSSIYNSDANDVDVGDGDASPADVD 88


>ref|XP_006349214.1| PREDICTED: transcription regulatory protein SNF2-like [Solanum
           tuberosum]
          Length = 1105

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 31/57 (54%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
 Frame = +3

Query: 189 EPENPLDSAKTLICALNFLSRNLPLPQHVYDAVSSI----CQDASTDSGDDGPADLD 347
           E ++ L   KTLICALNFLSRNLP+P  V+DAVSSI      D      D  PAD+D
Sbjct: 31  ESQDQLQKTKTLICALNFLSRNLPIPPDVFDAVSSIYHSDANDVEVGDEDASPADVD 87


>gb|EOY05607.1| Chromatin remodeling complex subunit isoform 2 [Theobroma cacao]
          Length = 1083

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 35/80 (43%), Positives = 44/80 (55%), Gaps = 13/80 (16%)
 Frame = +3

Query: 174 VEADPEPENP----LDSAKTLICALNFLSRNLPLPQHVYDAVSSICQD------ASTD-- 317
           +E   + E P    L  AK+LICALNF+SRNLPLP  ++D VSSIC D       +TD  
Sbjct: 5   LEHQQQKEEPCLDNLQKAKSLICALNFVSRNLPLPPDLFDVVSSICYDEQEGLSEATDDG 64

Query: 318 -SGDDGPADLDCDGEGEDRN 374
             GDDG  +      G D +
Sbjct: 65  TQGDDGSDEAGVSQMGTDES 84


>gb|EOY05606.1| Chromatin remodeling complex subunit isoform 1 [Theobroma cacao]
          Length = 1127

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 35/80 (43%), Positives = 44/80 (55%), Gaps = 13/80 (16%)
 Frame = +3

Query: 174 VEADPEPENP----LDSAKTLICALNFLSRNLPLPQHVYDAVSSICQD------ASTD-- 317
           +E   + E P    L  AK+LICALNF+SRNLPLP  ++D VSSIC D       +TD  
Sbjct: 5   LEHQQQKEEPCLDNLQKAKSLICALNFVSRNLPLPPDLFDVVSSICYDEQEGLSEATDDG 64

Query: 318 -SGDDGPADLDCDGEGEDRN 374
             GDDG  +      G D +
Sbjct: 65  TQGDDGSDEAGVSQMGTDES 84


>ref|NP_187252.2| SNF2/Brahma-type chromatin-remodeling protein CHR12 [Arabidopsis
           thaliana] gi|332640808|gb|AEE74329.1| SNF2/Brahma-type
           chromatin-remodeling protein CHR12 [Arabidopsis
           thaliana]
          Length = 1102

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 25/45 (55%), Positives = 36/45 (80%)
 Frame = +3

Query: 195 ENPLDSAKTLICALNFLSRNLPLPQHVYDAVSSICQDASTDSGDD 329
           E+P+++ K+LICALN++SR+LPLP H++ AVSSI   AS+ S  D
Sbjct: 16  EDPVETTKSLICALNYISRDLPLPPHLFTAVSSIYHGASSSSLSD 60


>gb|AAF23228.1|AC013454_15 putative transcriptional regulator [Arabidopsis thaliana]
          Length = 1132

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 25/45 (55%), Positives = 36/45 (80%)
 Frame = +3

Query: 195 ENPLDSAKTLICALNFLSRNLPLPQHVYDAVSSICQDASTDSGDD 329
           E+P+++ K+LICALN++SR+LPLP H++ AVSSI   AS+ S  D
Sbjct: 16  EDPVETTKSLICALNYISRDLPLPPHLFTAVSSIYHGASSSSLSD 60


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