BLASTX nr result
ID: Rehmannia23_contig00032897
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia23_contig00032897
(622 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624... 199 4e-49
emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera] 173 3e-41
emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera] 172 7e-41
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera] 170 3e-40
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 169 6e-40
emb|CAN75728.1| hypothetical protein VITISV_031408 [Vitis vinifera] 169 8e-40
ref|XP_006580845.1| PREDICTED: uncharacterized protein LOC102660... 166 6e-39
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 164 2e-38
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 163 4e-38
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni... 162 5e-38
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera] 162 7e-38
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group... 162 7e-38
ref|XP_004967136.1| PREDICTED: uncharacterized protein LOC101762... 161 2e-37
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group... 161 2e-37
emb|CAN68623.1| hypothetical protein VITISV_010681 [Vitis vinifera] 160 3e-37
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol... 159 8e-37
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop... 159 8e-37
gb|ABA97707.2| retrotransposon protein, putative, Ty1-copia subc... 158 1e-36
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 158 1e-36
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc... 158 1e-36
>ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624640 [Citrus sinensis]
Length = 1682
Score = 199 bits (507), Expect = 4e-49
Identities = 93/181 (51%), Positives = 120/181 (66%)
Frame = +3
Query: 3 GIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTP 182
GI FRHPCPH H QNG+ ERKHRHIV++GLTLL QA++PL++WW AF+T+ FLIN L TP
Sbjct: 65 GIQFRHPCPHIHHQNGRIERKHRHIVDIGLTLLAQANLPLKFWWNAFHTAVFLINRLPTP 124
Query: 183 TLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYK 362
TLN+ SP + GCACFP+++ YN+HKL FRS +CVFIGYS +HKGY+
Sbjct: 125 TLNNISPYQKLFQQVPDYVSLRVFGCACFPYLRPYNRHKLSFRSNRCVFIGYSSSHKGYQ 184
Query: 363 CLHPSGKIYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQSSNIQYSHWLPFLSHSSQVQ 542
CLH SG++Y++ V F+E FP+ SG S S S S+ +P S +Q
Sbjct: 185 CLHSSGRVYVSNHVIFDEQSFPYVSGSDFSSIAQSCSPLDISSESKVTLVPIPQVQSPLQ 244
Query: 543 E 545
E
Sbjct: 245 E 245
>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
Length = 1262
Score = 173 bits (439), Expect = 3e-41
Identities = 79/144 (54%), Positives = 99/144 (68%)
Frame = +3
Query: 3 GIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTP 182
GI R CPHT QNG ERKHRHIVE+GLTLL QAS+PL+YW +AF+T+ FLIN L T
Sbjct: 460 GIIHRLSCPHTSKQNGIIERKHRHIVELGLTLLAQASLPLKYWPDAFSTAVFLINRLPTE 519
Query: 183 TLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYK 362
L + P E GC CFPH++ YN+HKLDFRS+ C F+GYS HKGYK
Sbjct: 520 VLKQKCPYEFLFNSKPNYSQLKVFGCLCFPHLRPYNKHKLDFRSSPCTFLGYSSKHKGYK 579
Query: 363 CLHPSGKIYIAQSVTFNECEFPFS 434
CL+ G+++I++SV F+E FPF+
Sbjct: 580 CLNQQGRMFISRSVVFDETRFPFA 603
>emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]
Length = 1242
Score = 172 bits (436), Expect = 7e-41
Identities = 79/143 (55%), Positives = 98/143 (68%)
Frame = +3
Query: 3 GIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTP 182
GI R CPHT QNG ERKHRHIVE+GLTLL QAS+PL+YW +AF+T FLIN L T
Sbjct: 706 GIIHRLSCPHTSKQNGIIERKHRHIVELGLTLLAQASLPLKYWPDAFSTXVFLINRLPTE 765
Query: 183 TLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYK 362
L + P E GC CFPH++ YN+HKLDFRS+ C F+GYS HKGYK
Sbjct: 766 VLKQKCPYEFLFNSKPNYSQLKVFGCLCFPHLRPYNKHKLDFRSSPCTFLGYSSKHKGYK 825
Query: 363 CLHPSGKIYIAQSVTFNECEFPF 431
CL+ G+++I++SV F+E +FPF
Sbjct: 826 CLNQQGRMFISRSVXFDETKFPF 848
>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
Length = 1424
Score = 170 bits (431), Expect = 3e-40
Identities = 78/144 (54%), Positives = 98/144 (68%)
Frame = +3
Query: 3 GIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTP 182
GI R CP+TH QNG +ERKHRHIVE G+ LL QAS+P +YW EAF TS +LIN L TP
Sbjct: 648 GIIHRISCPYTHEQNGLAERKHRHIVEHGIALLAQASLPFKYWDEAFRTSVYLINRLPTP 707
Query: 183 TLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYK 362
L ++SP+E GC C+P+++ +N HKL FRS C F+GYS NHKGYK
Sbjct: 708 VLKNKSPLEVLFHQKPSYSXLKVFGCMCYPNLRPFNHHKLQFRSIPCTFLGYSLNHKGYK 767
Query: 363 CLHPSGKIYIAQSVTFNECEFPFS 434
CL P+G I I++ V F+E FPF+
Sbjct: 768 CLSPNGNILISRDVIFDEXAFPFA 791
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gi|531389|gb|AAA57005.1| copia-like retrotransposon
Hopscotch polyprotein [Zea mays]
Length = 1439
Score = 169 bits (428), Expect = 6e-40
Identities = 82/178 (46%), Positives = 113/178 (63%), Gaps = 1/178 (0%)
Frame = +3
Query: 3 GIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTP 182
GIH + CPHTH QNG +ERKHRHIVE+GL LL Q+SMPL+YW AF + +LIN +
Sbjct: 599 GIHHQVSCPHTHQQNGAAERKHRHIVEVGLALLAQSSMPLKYWDHAFLAAVYLINRTPSK 658
Query: 183 TLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYK 362
T+ H +P+ GCAC+P+++ YNQHKL FRST+CVF+GYS HKG+K
Sbjct: 659 TIAHDTPLHKLTGATPDYSSLRIFGCACWPNLRPYNQHKLQFRSTRCVFLGYSNMHKGFK 718
Query: 363 CLHPS-GKIYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQSSNIQYSHWLPFLSHSS 533
CL S G+IYI++ V F+E FPF+ S ++++ ++Y+ + L H S
Sbjct: 719 CLDISTGRIYISRDVVFDEHVFPFA------------SLNKNAGVKYTSEVLLLPHDS 764
>emb|CAN75728.1| hypothetical protein VITISV_031408 [Vitis vinifera]
Length = 1099
Score = 169 bits (427), Expect = 8e-40
Identities = 74/146 (50%), Positives = 101/146 (69%), Gaps = 1/146 (0%)
Frame = +3
Query: 3 GIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTP 182
GI FRHPC +TH Q + E+KH HI+++ LTLL Q +MPL +WW+A +S F+IN L T
Sbjct: 389 GILFRHPCLYTHQQQRRVEQKHHHIIDLSLTLLAQDAMPLTFWWDACVSSVFIINQLLTK 448
Query: 183 TL-NHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGY 359
L N QSP + GC+C+ +++ YN HK FRSTKC+F+GYSP HKGY
Sbjct: 449 VLANFQSPFKTLFGSKLDYSFFKVFGCSCYSYLRPYNSHKFSFRSTKCLFLGYSPXHKGY 508
Query: 360 KCLHPSGKIYIAQSVTFNECEFPFSS 437
+CL SG+IY+A+S+TFNE +FP+S+
Sbjct: 509 RCLSXSGQIYVAKSITFNENDFPYST 534
>ref|XP_006580845.1| PREDICTED: uncharacterized protein LOC102660325 [Glycine max]
Length = 868
Score = 166 bits (419), Expect = 6e-39
Identities = 79/156 (50%), Positives = 104/156 (66%), Gaps = 4/156 (2%)
Frame = +3
Query: 3 GIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTP 182
GI R CPHTH QNG ERKHR+ VE GL LL Q+++PL++W +F T+A+LIN L +
Sbjct: 710 GIVHRFTCPHTHHQNGIVERKHRYTVETGLALLAQSTLPLKFWDHSFVTAAYLINRLPSV 769
Query: 183 TLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYK 362
+LN+QS GC+CFP ++ YN HKLD+RS +C+F+GYS HKGYK
Sbjct: 770 SLNNQSLYFKLLNKQPDYSCLRVFGCSCFPFLRPYNSHKLDYRSQECIFLGYSTAHKGYK 829
Query: 363 CLHPSGKIYIAQSVTFNECEFPFSSGFHT----SFF 458
CL P+G IYI++ V F E +FP+S+ FHT SFF
Sbjct: 830 CLAPNGHIYISKDVLFQESKFPYSTLFHTIPHYSFF 865
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 164 bits (414), Expect = 2e-38
Identities = 77/151 (50%), Positives = 99/151 (65%), Gaps = 1/151 (0%)
Frame = +3
Query: 3 GIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTP 182
GI CPHTH QNG +ERKHRHIVE+GLTLL +SMPL++W EAF + +LIN T
Sbjct: 599 GITHHVSCPHTHQQNGSAERKHRHIVEVGLTLLAYSSMPLKFWDEAFQAAVYLINRTPTK 658
Query: 183 TLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYK 362
L +P+E GCAC+PH++ YN HKL FRS +C F+GYS HKG+K
Sbjct: 659 LLQFLTPLEHLFNQTPDYSSLRVFGCACWPHLRPYNTHKLQFRSKQCTFLGYSTLHKGFK 718
Query: 363 CLHPS-GKIYIAQSVTFNECEFPFSSGFHTS 452
CL PS G++YI++ V F+E FPF+ HT+
Sbjct: 719 CLDPSTGRVYISRDVIFDETNFPFAK-LHTN 748
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 163 bits (412), Expect = 4e-38
Identities = 73/146 (50%), Positives = 102/146 (69%), Gaps = 1/146 (0%)
Frame = +3
Query: 3 GIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTP 182
GI CPHTH QNG +ERKHRHI+E+GL+LL+ ASMPL++W EAF + +LIN + +
Sbjct: 599 GIDHHVSCPHTHQQNGSAERKHRHIIEVGLSLLSYASMPLKFWDEAFVAATYLINRVPSK 658
Query: 183 TLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYK 362
T+ + +P+E GCAC+PH++ YN HKL FRS +CVF+G+S +HKG+K
Sbjct: 659 TIQNSTPLEKLFNQKPDYLSLRVFGCACWPHLRPYNTHKLQFRSKQCVFLGFSTHHKGFK 718
Query: 363 CLH-PSGKIYIAQSVTFNECEFPFSS 437
CL SG++YI++ V F+E FPFS+
Sbjct: 719 CLDVSSGRVYISRDVVFDENIFPFST 744
>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108706314|gb|ABF94109.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1247
Score = 162 bits (411), Expect = 5e-38
Identities = 75/146 (51%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
Frame = +3
Query: 3 GIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTP 182
GI CPHTH QNG +ERKHRHIVEMGL LL +SMPL++W EAF ++ +LIN +
Sbjct: 397 GITHHVSCPHTHQQNGSAERKHRHIVEMGLALLAYSSMPLKFWDEAFTSAVYLINRTPSR 456
Query: 183 TLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYK 362
L + +P+E GCAC+PH++ YN KL FRS +C F+GYSP HKG+K
Sbjct: 457 LLKYATPLERLFKQTPDYNLLRVFGCACWPHLRPYNARKLQFRSKQCTFLGYSPLHKGFK 516
Query: 363 CLHPS-GKIYIAQSVTFNECEFPFSS 437
CL PS G++YI+ V F+E FPF+S
Sbjct: 517 CLDPSTGRVYISHDVIFDENVFPFAS 542
>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
Length = 1455
Score = 162 bits (410), Expect = 7e-38
Identities = 80/174 (45%), Positives = 104/174 (59%)
Frame = +3
Query: 3 GIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTP 182
GI R CPHT QNG +ERKHR IVE GLTLL AS+PL++W E+F T +L N L T
Sbjct: 665 GIVHRVSCPHTQQQNGVAERKHRTIVEHGLTLLHTASLPLKFWDESFRTVVYLSNRLPTA 724
Query: 183 TLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYK 362
L+H+ PIE GC+CFP+++ YN HKL +RS +C F+GYS HKGYK
Sbjct: 725 ILHHKCPIEVLFKSIPDYSFLKVFGCSCFPNLRPYNTHKLQYRSEECTFLGYSLKHKGYK 784
Query: 363 CLHPSGKIYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQSSNIQYSHWLPFLS 524
C+ +G++YI+ V FNE FP+S S S +S++ S P LS
Sbjct: 785 CMSSNGRVYISHDVIFNETSFPYSKTIQVSSCLLSTVSPSTSHLSPSASPPVLS 838
>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708884|gb|ABF96679.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1437
Score = 162 bits (410), Expect = 7e-38
Identities = 74/145 (51%), Positives = 99/145 (68%), Gaps = 1/145 (0%)
Frame = +3
Query: 3 GIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTP 182
GI CPHTH QNG +ERKHRHIVE+GL LL +SMPL++W EAF ++ +LIN +
Sbjct: 597 GITHHVSCPHTHQQNGSAERKHRHIVEVGLALLAYSSMPLKFWGEAFLSAVYLINRTPSR 656
Query: 183 TLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYK 362
L+ SP+E GCAC+P+++ YN+HKL FRST C F+GYS HKG+K
Sbjct: 657 VLHDVSPLERLLGHKPDYNALRVFGCACWPNLRPYNKHKLQFRSTTCTFLGYSTLHKGFK 716
Query: 363 CLHPS-GKIYIAQSVTFNECEFPFS 434
CL PS G++YI++ V F+E +FPF+
Sbjct: 717 CLDPSTGRVYISRDVVFDETQFPFT 741
>ref|XP_004967136.1| PREDICTED: uncharacterized protein LOC101762311 [Setaria italica]
Length = 866
Score = 161 bits (407), Expect = 2e-37
Identities = 76/145 (52%), Positives = 97/145 (66%), Gaps = 1/145 (0%)
Frame = +3
Query: 3 GIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTP 182
GI R CPHTH QNG +ERKHRHI+E+GL LL ASMPL++W +AF T+ +LIN L +
Sbjct: 511 GISHRVSCPHTHQQNGAAERKHRHIIEVGLALLANASMPLKFWDQAFLTATYLINLLPSK 570
Query: 183 TLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYK 362
+N + P GCAC+P+++ YN HKL FRST+C FIGYS HKG+K
Sbjct: 571 VINFEIPATRLFGDTSDYSNLRVFGCACWPNLRPYNSHKLSFRSTQCAFIGYSSMHKGFK 630
Query: 363 CLHPS-GKIYIAQSVTFNECEFPFS 434
CL S G+IYI++ V F+E FPFS
Sbjct: 631 CLDISTGRIYISRDVVFDEAVFPFS 655
>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1256
Score = 161 bits (407), Expect = 2e-37
Identities = 72/145 (49%), Positives = 97/145 (66%), Gaps = 1/145 (0%)
Frame = +3
Query: 3 GIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTP 182
GI CPHTH QNG +ERKHRHIVE+GL+LL AS+PL++W EA+ + +LIN + T
Sbjct: 428 GITHHVSCPHTHQQNGSAERKHRHIVEVGLSLLAHASLPLKFWDEAYQSGVYLINRMPTK 487
Query: 183 TLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYK 362
L + SP+E GCAC+P ++ YN HK+ FRS +C F+GYSP HKG++
Sbjct: 488 VLGYSSPLECLFKQTPDYQALRTFGCACWPDLRPYNSHKMHFRSKRCTFLGYSPLHKGFR 547
Query: 363 CLHPS-GKIYIAQSVTFNECEFPFS 434
CL S G+IYI++ V F+E FPF+
Sbjct: 548 CLDSSTGRIYISRDVVFDESVFPFA 572
>emb|CAN68623.1| hypothetical protein VITISV_010681 [Vitis vinifera]
Length = 846
Score = 160 bits (405), Expect = 3e-37
Identities = 79/174 (45%), Positives = 104/174 (59%)
Frame = +3
Query: 3 GIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTP 182
GI R CPHT QNG +ERKHR IVE GLTLL AS+PL++W E+F T +L N L T
Sbjct: 247 GIVHRVSCPHTQQQNGVAERKHRTIVEHGLTLLHTASLPLKFWDESFRTVVYLSNRLPTA 306
Query: 183 TLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYK 362
L+H+ PIE GC+CFP+++ YN HKL +RS +C F+GYS HKGYK
Sbjct: 307 VLHHKCPIEVLFKSIPDYSFLKVFGCSCFPNLRPYNTHKLQYRSEECTFLGYSLKHKGYK 366
Query: 363 CLHPSGKIYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQSSNIQYSHWLPFLS 524
C+ +G++YI++ V FNE F +S S S +S++ S P LS
Sbjct: 367 CMFSNGRVYISRDVIFNETSFSYSKTIQASSCLPSTVSPSTSHLSPSAPPPILS 420
>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 969
Score = 159 bits (401), Expect = 8e-37
Identities = 75/146 (51%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
Frame = +3
Query: 3 GIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTP 182
GI CPH H QNG +ERKHRHIVE+GL+LL ASMPL++W EAF +A+LIN T
Sbjct: 446 GISHLVSCPHAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFLAAAYLINRTPTK 505
Query: 183 TLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYK 362
LN +P E GC C+P+++ YN HKL FRS +CVF+GYS HKG+K
Sbjct: 506 ILNLDTPFERLFHKQPDYSVLRIFGCVCWPNLRPYNSHKLQFRSKQCVFLGYSSLHKGFK 565
Query: 363 CLHPS-GKIYIAQSVTFNECEFPFSS 437
CL S G++Y+++ VTF+E FPF+S
Sbjct: 566 CLDVSTGRVYVSRDVTFDENFFPFAS 591
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 1313
Score = 159 bits (401), Expect = 8e-37
Identities = 75/146 (51%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
Frame = +3
Query: 3 GIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTP 182
GI CPH H QNG +ERKHRHIVE+GL+LL ASMPL++W EAF +A+LIN T
Sbjct: 446 GISHLVSCPHAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFLAAAYLINRTPTK 505
Query: 183 TLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYK 362
LN +P E GC C+P+++ YN HKL FRS +CVF+GYS HKG+K
Sbjct: 506 ILNLDTPFERLFHKQPDYSVLRIFGCVCWPNLRPYNSHKLQFRSKQCVFLGYSSLHKGFK 565
Query: 363 CLHPS-GKIYIAQSVTFNECEFPFSS 437
CL S G++Y+++ VTF+E FPF+S
Sbjct: 566 CLDVSTGRVYVSRDVTFDENFFPFAS 591
>gb|ABA97707.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1001
Score = 158 bits (400), Expect = 1e-36
Identities = 76/145 (52%), Positives = 97/145 (66%), Gaps = 1/145 (0%)
Frame = +3
Query: 3 GIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTP 182
GI R CPH H QNG +ERKHRHIVE+GL LL ASMPL++W EAF T+ +LIN
Sbjct: 338 GISHRVSCPHAHQQNGAAERKHRHIVEVGLALLAHASMPLKFWDEAFCTATYLINRTPAK 397
Query: 183 TLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYK 362
T+N +P+E GCAC+P+++ YN KL FRST+CVF+GYS +KG+K
Sbjct: 398 TINFDTPLERLFHQKPEYASLRTFGCACWPNLRPYNSKKLVFRSTQCVFLGYSRLYKGFK 457
Query: 363 CLHPS-GKIYIAQSVTFNECEFPFS 434
CLH S G+IYI++ V F E FPF+
Sbjct: 458 CLHVSTGRIYISRDVIFYENVFPFA 482
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 158 bits (399), Expect = 1e-36
Identities = 73/145 (50%), Positives = 100/145 (68%), Gaps = 1/145 (0%)
Frame = +3
Query: 3 GIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTP 182
GI CPHTH QNG +ERKHRHIVE+GL+LL+ ASMPL++W EAF + +LIN + +
Sbjct: 593 GIVHHVSCPHTHQQNGSAERKHRHIVEIGLSLLSHASMPLKFWDEAFQVATYLINRVPSR 652
Query: 183 TLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYK 362
+++ SP+E GCAC+P+++ YN HKL FRS +CVF+G+S HKG+K
Sbjct: 653 VIHNISPLEKLFKQKPDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCVFLGFSTMHKGFK 712
Query: 363 CLHPS-GKIYIAQSVTFNECEFPFS 434
CL S G+IYI++ V F+E FPF+
Sbjct: 713 CLEVSTGRIYISRDVVFDENIFPFT 737
>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1478
Score = 158 bits (399), Expect = 1e-36
Identities = 73/145 (50%), Positives = 100/145 (68%), Gaps = 1/145 (0%)
Frame = +3
Query: 3 GIHFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTP 182
GI CPHTH QNG +ERKHRHIVE+GL+LL+ ASMPL++W EAF + +LIN + +
Sbjct: 626 GIVHHVSCPHTHQQNGSAERKHRHIVEIGLSLLSHASMPLKFWDEAFQAATYLINRVPSR 685
Query: 183 TLNHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYK 362
+++ SP+E GCAC+P+++ YN HKL FRS +CVF+G+S HKG+K
Sbjct: 686 VIHNISPLEKLFKQKPDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCVFLGFSTMHKGFK 745
Query: 363 CLHPS-GKIYIAQSVTFNECEFPFS 434
CL S G+IYI++ V F+E FPF+
Sbjct: 746 CLEVSTGRIYISRDVVFDENIFPFT 770