BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00031595
         (768 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme...   130   5e-28
ref|XP_002310025.1| hypothetical protein POPTRDRAFT_562704 [Popu...   129   8e-28
ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polyme...   123   8e-26
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr...   114   4e-23
ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polyme...   109   9e-22
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu...   104   3e-20
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu...   101   3e-19
ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme...   100   4e-19
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme...   100   9e-19
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu...    99   1e-18
ref|XP_002310027.1| hypothetical protein POPTRDRAFT_562706 [Popu...    99   2e-18
gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus no...    94   4e-17
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr...    90   1e-15
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps...    90   1e-15
emb|CBI28010.3| unnamed protein product [Vitis vinifera]               89   2e-15
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...    89   2e-15
ref|XP_006296898.1| hypothetical protein CARUB_v10012890mg [Caps...    88   4e-15
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid...    85   2e-14
gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]             85   2e-14
gb|ESW24973.1| hypothetical protein PHAVU_004G1764001g, partial ...    85   3e-14

>ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
           tuberosum]
          Length = 911

 Score =  130 bits (327), Expect = 5e-28
 Identities = 91/255 (35%), Positives = 138/255 (54%)
 Frame = +1

Query: 1   PESIERIIKRICQEKNQPPLKYYARKMLAEIGEQASMELLTMILSSKKTITSFSGYVSYL 180
           P S+E ++++IC E+ Q PL    R+ L+ IGE+ S+E+L  I+SS+    S S ++ YL
Sbjct: 21  PYSVETMLEKICNEQGQKPLGTGIRRRLSSIGEKGSLEILK-IISSRPIKKSLSAFLVYL 79

Query: 181 IKRDYTIEAAKVLSAYGSPQVSTQTQRMLSPSSISPYISTQKLNGEXXXXXXXXXXXXXX 360
           I R     ++   S + SP      +R  SP  + P    +++ GE              
Sbjct: 80  IDRYPDCLSS---SPFNSP-----LKRSSSPL-LFPSPEGKRVQGESPSKSKLEMGFLAC 130

Query: 361 XXXXXKTDLQSICCELSFDDETQEKRSFSVKRQSSLAGEHREVAESTTVSQQLMVLNKLE 540
                    Q +  +LSF +E +     + +R S              VSQQLM+LN+LE
Sbjct: 131 ASP------QKVARQLSFREEPES----NCRRTSP------------NVSQQLMILNELE 168

Query: 541 YRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFESKIWITYGQKFCDKSDRSQY 720
           +RKLFLVLSYIG +KLE +V+   A++I   K+L M  FES+IW  +G+ +  +SDRS+Y
Sbjct: 169 FRKLFLVLSYIGCKKLEDIVSPQIADDIVRKKNLSMTDFESEIWNAFGKAYYAESDRSKY 228

Query: 721 LGWDSGKTHIYCCHV 765
           + W+  KTHIY CH+
Sbjct: 229 VDWNCRKTHIYYCHI 243


>ref|XP_002310025.1| hypothetical protein POPTRDRAFT_562704 [Populus trichocarpa]
          Length = 305

 Score =  129 bits (325), Expect = 8e-28
 Identities = 87/258 (33%), Positives = 134/258 (51%), Gaps = 3/258 (1%)
 Frame = +1

Query: 1   PESIERIIKRICQEKNQPPLKYYARKMLAEIGEQASMELLTMILSSKKTITSFSGYVSYL 180
           P  +E +I +IC+E+N+ PL+   R  LA +GE+ ++ +L  I S ++   SF G+V +L
Sbjct: 13  PCVVEELIAKICREQNRRPLETNTRLTLASLGEEVALNILWRI-SGQEIRKSFDGFVLHL 71

Query: 181 IKRDYTIEAAKVLSAYGSPQV-STQTQRMLSPSSISPYISTQKLNGEXXXXXXXXXXXXX 357
            K+     +  + ++  SP + S+ +     P + SP  +T+ L                
Sbjct: 72  AKQF----SPNINASSSSPNIHSSLSPSPQQPQNRSPITTTRLLMNSQS----------- 116

Query: 358 XXXXXXKTDLQSICCELSFDDETQEKRSFSVKRQSSLAGEHREVAESTTVSQQLMVLNKL 537
                              D   Q   S  ++  S++  + +   ESTT SQ L+ L +L
Sbjct: 117 -------------------DSGAQSPISLKLEGSSTMDSQRQRGNESTT-SQHLVALGEL 156

Query: 538 EYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFESKIWITYG--QKFCDKSDR 711
           E+RK FL+LSY+G + LE VV++D   +I   KDLPM  FESKIW  +G  + +  + DR
Sbjct: 157 EFRKAFLILSYLGGKNLEEVVSVD---QIRGYKDLPMRTFESKIWEAFGCRRDYIKEEDR 213

Query: 712 SQYLGWDSGKTHIYCCHV 765
            +YL WDSGKTHIY CHV
Sbjct: 214 VKYLDWDSGKTHIYHCHV 231


>ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
           lycopersicum]
          Length = 759

 Score =  123 bits (308), Expect = 8e-26
 Identities = 87/270 (32%), Positives = 134/270 (49%), Gaps = 15/270 (5%)
 Frame = +1

Query: 1   PESIERIIKRICQEKNQPPLKYYARKMLAEIGEQASMELLTMILSS--KKTITSFSGYVS 174
           P S++++I +IC+++ Q       R++L  IGE+ S+ +L  I     KKT+   SG++ 
Sbjct: 15  PSSVQQMINQICKKERQNSPDDTVRRLLVAIGEERSLYILNEISKCQIKKTL---SGFIV 71

Query: 175 YLIKRDYTIEAAK----------VLSA---YGSPQVSTQTQRMLSPSSISPYISTQKLNG 315
           ++ K+ Y  E  +          VLSA   Y SPQ+   +  + SP+S    ++    N 
Sbjct: 72  FMAKKYYQSETQQFYQKQNHEQPVLSAESFYHSPQIRRNS--LSSPNSSCSSVNFSPRN- 128

Query: 316 EXXXXXXXXXXXXXXXXXXXKTDLQSICCELSFDDETQEKRSFSVKRQSSLAGEHREVAE 495
                                +D  +    +     +    SF          + R+ A 
Sbjct: 129 --------RPIFQDRDIVGDTSDSPTSGPRIPSPPLSPVTTSFQKCHYDPSPSKFRDRAS 180

Query: 496 STTVSQQLMVLNKLEYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFESKIWI 675
           +  +S+QL+ LNKLE+RK FL+L+YIGR+K+E V+TL    +I  M   PM  FES IW 
Sbjct: 181 TRGISEQLLALNKLEFRKFFLILNYIGRRKVEDVITLHDVGDILDMIYQPMSHFESYIWN 240

Query: 676 TYGQKFCDKSDRSQYLGWDSGKTHIYCCHV 765
            YG   C+ + R QYL WDSG+TH+Y CHV
Sbjct: 241 KYGH-LCEHNKRVQYLDWDSGRTHLYHCHV 269


>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
           gi|568843309|ref|XP_006475556.1| PREDICTED: probable
           RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
           sinensis] gi|557554497|gb|ESR64511.1| hypothetical
           protein CICLE_v10007331mg [Citrus clementina]
          Length = 1015

 Score =  114 bits (285), Expect = 4e-23
 Identities = 84/262 (32%), Positives = 129/262 (49%), Gaps = 7/262 (2%)
 Frame = +1

Query: 1   PESIERIIKRICQEKNQPPLKYYARKMLAEIGEQASMELLTMILSSKKTITSFSGYVSYL 180
           P S+E++I +I  E+N+ P    AR+ LA +GE A++++L  I S K    SFSGY++YL
Sbjct: 16  PLSVEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDKIKY-SFSGYINYL 74

Query: 181 IKR--DYTIEAAKVLSAYGSPQ-----VSTQTQRMLSPSSISPYISTQKLNGEXXXXXXX 339
           +K+  +      +V  +  SPQ     V+  T R+L+    + Y+  Q    +       
Sbjct: 75  VKKRNNNGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSPVADQQPRG-- 132

Query: 340 XXXXXXXXXXXXKTDLQSICCELSFDDETQEKRSFSVKRQSSLAGEHREVAESTTVSQQL 519
                        + + SI              S +++ ++S+               Q 
Sbjct: 133 -------------SPMSSI--------------SHAMRHRASIP--------------QY 151

Query: 520 MVLNKLEYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFESKIWITYGQKFCD 699
           + L +LE+RK FL+LSYIG   LE V+T D   EI  M+DL M  FES++W   G+K   
Sbjct: 152 VALGELEFRKAFLILSYIGENSLEEVITAD---EIRGMRDLQMARFESEVWEKLGRKNIS 208

Query: 700 KSDRSQYLGWDSGKTHIYCCHV 765
           + DR   L WDSGKTH+Y CH+
Sbjct: 209 QEDRRMSLKWDSGKTHMYHCHI 230


>ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cicer
           arietinum]
          Length = 997

 Score =  109 bits (273), Expect = 9e-22
 Identities = 82/256 (32%), Positives = 127/256 (49%), Gaps = 1/256 (0%)
 Frame = +1

Query: 1   PESIERIIKRICQEKNQPPLKYYARKMLAEIGEQASMELLTMILSSKKTITSFSGYVSYL 180
           P S+E +I +I ++++QPPL    R+ LAE+GEQ ++++L  I S++    S + +  Y+
Sbjct: 9   PSSVENLINQIREQQSQPPLDSSIRRNLAELGEQKALQILYYI-STQPIKRSLNAFTVYM 67

Query: 181 IKRDYTIEAAKVLSAYGSPQVSTQTQRMLSPSSISPYISTQKLNGEXXXXXXXXXXXXXX 360
           I +  +  +    S   S Q  +Q+Q    P S+   + +                    
Sbjct: 68  INQHRSPPSP---SRPSSSQSQSQSQSQSRPYSLQSQLLSH------------------- 105

Query: 361 XXXXXKTDLQSICCELSFDDETQEKRSFSVKRQSSLAGEHREVAESTTVSQQLMVLNKLE 540
                   LQS    L         RS S+   S+    H +V         L  L +LE
Sbjct: 106 --------LQSRPSPLPL-------RSQSLPSSSTAPPPHSDV---------LTALGELE 141

Query: 541 YRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFESKIWITYGQKFCDK-SDRSQ 717
           +RK FL++SY GR+ +E VVT   A  + S+K+L M+ FE +IW T GQK+ ++ +DR  
Sbjct: 142 FRKSFLLMSYAGRENIENVVT---AEYVRSLKELTMKNFEKEIWETVGQKYIERPTDRLV 198

Query: 718 YLGWDSGKTHIYCCHV 765
           YL WDSG+THIY C V
Sbjct: 199 YLDWDSGRTHIYQCFV 214


>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
           gi|550334279|gb|ERP58266.1| hypothetical protein
           POPTR_0007s06560g [Populus trichocarpa]
          Length = 899

 Score =  104 bits (260), Expect = 3e-20
 Identities = 56/119 (47%), Positives = 76/119 (63%), Gaps = 2/119 (1%)
 Frame = +1

Query: 415 DDETQEKRSFSVKRQSSLAGEHREVAESTTVSQQLMVLNKLEYRKLFLVLSYIGRQKLEA 594
           D   Q   S  ++  S++  + +   ESTT SQ L+ L +LE+RK FL+LSY+G + LE 
Sbjct: 6   DSGAQSPISLKLEGSSTMDSQRQRGNESTT-SQHLVALGELEFRKAFLILSYLGGKNLEE 64

Query: 595 VVTLDGANEIHSMKDLPMEVFESKIWITYG--QKFCDKSDRSQYLGWDSGKTHIYCCHV 765
           VV++D   +I   KDLPM  FESKIW  +G  + +  + DR +YL WDSGKTHIY CHV
Sbjct: 65  VVSVD---QIRGYKDLPMRTFESKIWEAFGCRRDYIKEEDRVKYLDWDSGKTHIYHCHV 120


>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
           gi|550334280|gb|ERP58267.1| hypothetical protein
           POPTR_0007s06560g [Populus trichocarpa]
          Length = 877

 Score =  101 bits (251), Expect = 3e-19
 Identities = 50/97 (51%), Positives = 66/97 (68%), Gaps = 2/97 (2%)
 Frame = +1

Query: 481 REVAESTTVSQQLMVLNKLEYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFE 660
           R+    +T SQ L+ L +LE+RK FL+LSY+G + LE VV++D   +I   KDLPM  FE
Sbjct: 5   RQRGNESTTSQHLVALGELEFRKAFLILSYLGGKNLEEVVSVD---QIRGYKDLPMRTFE 61

Query: 661 SKIWITYG--QKFCDKSDRSQYLGWDSGKTHIYCCHV 765
           SKIW  +G  + +  + DR +YL WDSGKTHIY CHV
Sbjct: 62  SKIWEAFGCRRDYIKEEDRVKYLDWDSGKTHIYHCHV 98


>ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
           lycopersicum]
          Length = 1011

 Score =  100 bits (250), Expect = 4e-19
 Identities = 84/241 (34%), Positives = 123/241 (51%), Gaps = 2/241 (0%)
 Frame = +1

Query: 1   PESIERIIKRICQEKNQPPLKYYARKMLAEIGEQASMELLTMILSSKKTITSFSGYVSYL 180
           P S+E ++ RIC+E+ Q P     R+ L+ IGE+ S+E+L  I+S +    S S ++ Y+
Sbjct: 17  PYSVETMLDRICKEQGQKPPCTGIRRRLSSIGEKGSLEML-KIISRRPIKKSLSAFLVYM 75

Query: 181 IKRDYTIEAAKVLSAYGSPQVSTQTQRMLSPSSISPYISTQKLNGEXXXXXXXXXXXXXX 360
           I R         LS+  SP  +   +R  SP  + P    ++L GE              
Sbjct: 76  IDR-----YPDCLSSSSSP-FNCLLKRSSSP-RLFPSPEGKRLQGE-------------- 114

Query: 361 XXXXXKTDLQSICCELSFDDETQEKRSFSVKRQSSLAGEHREVAESTT--VSQQLMVLNK 534
                K ++  + C       + +K    V RQ S   E       T+  VSQQLM+LN+
Sbjct: 115 SSSKSKLEMGLLAC------ASPQK----VARQLSFCEEPESNCRRTSPYVSQQLMILNE 164

Query: 535 LEYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFESKIWITYGQKFCDKSDRS 714
           LE+RKLFLVLSYIG  KLE V++   A++I   K+L M  FES+IW  +G+     SDRS
Sbjct: 165 LEFRKLFLVLSYIGCNKLEDVISPQIADDIVRKKNLSMTDFESEIWNAFGKACYAVSDRS 224

Query: 715 Q 717
           +
Sbjct: 225 K 225


>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
           tuberosum]
          Length = 1110

 Score = 99.8 bits (247), Expect = 9e-19
 Identities = 48/95 (50%), Positives = 65/95 (68%)
 Frame = +1

Query: 481 REVAESTTVSQQLMVLNKLEYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFE 660
           R+ A +  +S+QL+ L+KLE+RK FL+L+YIGR+K+E V+ L    +I  M   PM  FE
Sbjct: 232 RDRASTRGISEQLLALSKLEFRKFFLILNYIGRRKVEDVIMLHDVGDILDMIYQPMSHFE 291

Query: 661 SKIWITYGQKFCDKSDRSQYLGWDSGKTHIYCCHV 765
           S IW  YG   C+ + R QYL WDSG+TH+Y CHV
Sbjct: 292 SYIWNKYGH-LCEHNKRVQYLDWDSGRTHLYHCHV 325


>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
           gi|550336519|gb|ERP59562.1| hypothetical protein
           POPTR_0006s17780g [Populus trichocarpa]
          Length = 866

 Score = 99.4 bits (246), Expect = 1e-18
 Identities = 49/97 (50%), Positives = 66/97 (68%), Gaps = 2/97 (2%)
 Frame = +1

Query: 481 REVAESTTVSQQLMVLNKLEYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFE 660
           R+    +T SQ L+ L +LE+RK FL+L+Y+G + LE VV+   A++I   KDLPME FE
Sbjct: 5   RQRGSESTTSQHLVALGELEFRKAFLILNYLGGKNLEEVVS---ADQIRGYKDLPMETFE 61

Query: 661 SKIWITYG--QKFCDKSDRSQYLGWDSGKTHIYCCHV 765
           SKIW  +G  + +  + DR +YL WDSGK HIY CHV
Sbjct: 62  SKIWDAFGCRRDYIKEEDRVKYLDWDSGKAHIYHCHV 98


>ref|XP_002310027.1| hypothetical protein POPTRDRAFT_562706 [Populus trichocarpa]
          Length = 216

 Score = 98.6 bits (244), Expect = 2e-18
 Identities = 73/228 (32%), Positives = 116/228 (50%)
 Frame = +1

Query: 1   PESIERIIKRICQEKNQPPLKYYARKMLAEIGEQASMELLTMILSSKKTITSFSGYVSYL 180
           P ++E +I +IC+EK++ PL+   R  LA +GE+ ++ +L  I S  +   SF G+V +L
Sbjct: 13  PCAVEELITKICREKDRRPLETNTRSTLASLGEEVALNILRRI-SGLEIRKSFDGFVLHL 71

Query: 181 IKRDYTIEAAKVLSAYGSPQVSTQTQRMLSPSSISPYISTQKLNGEXXXXXXXXXXXXXX 360
            K+              SP ++  +      SS+SP  S Q+                  
Sbjct: 72  AKQC-------------SPNINASSSSPHMHSSLSP--SPQQPQN--------------- 101

Query: 361 XXXXXKTDLQSICCELSFDDETQEKRSFSVKRQSSLAGEHREVAESTTVSQQLMVLNKLE 540
                +T+ + +    S D   Q      ++  S++  + +  +ESTT SQ L+ L +LE
Sbjct: 102 -----RTNTRLLMNSQS-DSGAQSPTPLKLEGSSTMDSQRQRGSESTT-SQHLVALGELE 154

Query: 541 YRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFESKIWITYG 684
           +RK FL+LSY+G + LE VV+   A++I   KDLPME FESKIW  +G
Sbjct: 155 FRKAFLILSYLGGKNLEEVVS---ADQIRGYKDLPMETFESKIWEAFG 199


>gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus notabilis]
          Length = 529

 Score = 94.4 bits (233), Expect = 4e-17
 Identities = 44/84 (52%), Positives = 60/84 (71%)
 Frame = +1

Query: 514 QLMVLNKLEYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFESKIWITYGQKF 693
           Q+  L +LE+RK FL+L+YIGR +L++V T   A EI S+K+L M  FE ++W  +G+K+
Sbjct: 119 QMEALGELEFRKQFLILNYIGRNELQSVTT---AEEIRSLKNLSMVQFEKQVWQRFGEKY 175

Query: 694 CDKSDRSQYLGWDSGKTHIYCCHV 765
            D+ DR  Y  WDSGKTHIY CHV
Sbjct: 176 VDQEDRRIYHDWDSGKTHIYRCHV 199


>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
           gi|568843311|ref|XP_006475557.1| PREDICTED: probable
           RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
           sinensis] gi|557554498|gb|ESR64512.1| hypothetical
           protein CICLE_v10007331mg [Citrus clementina]
          Length = 1013

 Score = 89.7 bits (221), Expect = 1e-15
 Identities = 48/115 (41%), Positives = 67/115 (58%), Gaps = 9/115 (7%)
 Frame = +1

Query: 448 VKRQSSLAGEHREVAESTTVSQ---------QLMVLNKLEYRKLFLVLSYIGRQKLEAVV 600
           V +QS +A +    +  +++S          Q + L +LE+RK FL+LSYIG   LE V+
Sbjct: 117 VVKQSPVADQQPRGSPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVI 176

Query: 601 TLDGANEIHSMKDLPMEVFESKIWITYGQKFCDKSDRSQYLGWDSGKTHIYCCHV 765
           T D   EI  M+DL M  FES++W   G+K   + DR   L WDSGKTH+Y CH+
Sbjct: 177 TAD---EIRGMRDLQMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHI 228


>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
           gi|482565615|gb|EOA29804.1| hypothetical protein
           CARUB_v10012898mg [Capsella rubella]
          Length = 982

 Score = 89.7 bits (221), Expect = 1e-15
 Identities = 75/253 (29%), Positives = 116/253 (45%), Gaps = 1/253 (0%)
 Frame = +1

Query: 10  IERIIKRICQEKNQPPLKYYARKMLAEIGEQASMELLTMILSSKK-TITSFSGYVSYLIK 186
           IE  +  I ++ N  P+    R+ L  I E  + EL++ +LS +   I +   ++   + 
Sbjct: 23  IEIALVNIYRQHNLTPINDETRQRLCSIPENLAFELVSDVLSLQVGVIYNLDSFIVSKVN 82

Query: 187 RDYTIEAAKVLSAYGSPQVSTQTQRMLSPSSISPYISTQKLNGEXXXXXXXXXXXXXXXX 366
           +  ++  ++ LS+ GS   S Q +   SPS                              
Sbjct: 83  QAVSVTGSQRLSSGGS---SAQPR---SPSG----------------------------- 107

Query: 367 XXXKTDLQSICCELSFDDETQEKRSFSVKRQSSLAGEHREVAESTTVSQQLMVLNKLEYR 546
                  + +C  L  D+ + +  + S K         RE    T    QL+ L +LE++
Sbjct: 108 -------RHVCRVLDQDEMSVDSDAPSSKSLQ------REDVGGTLHIPQLVALGELEFK 154

Query: 547 KLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFESKIWITYGQKFCDKSDRSQYLG 726
           K FL+LSYI  Q+L  VVT   A EI   KDLPM  +E+ +W + G+KFC ++D  + L 
Sbjct: 155 KAFLLLSYIPGQRLGEVVT---AEEIRRWKDLPMVAYEAAVWDSLGRKFCPQTD-ERVLQ 210

Query: 727 WDSGKTHIYCCHV 765
           WDSGKTH Y CHV
Sbjct: 211 WDSGKTHYYQCHV 223


>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score = 89.0 bits (219), Expect = 2e-15
 Identities = 43/86 (50%), Positives = 60/86 (69%)
 Frame = +1

Query: 508 SQQLMVLNKLEYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFESKIWITYGQ 687
           S QL+ L +LE+RK FL+LSYIG ++ E +++   A EI  +K+LPM VFE+++W   G+
Sbjct: 99  SPQLVALGELEFRKAFLILSYIGDKRPEDLLS---AEEILKLKNLPMGVFETEVWNNLGR 155

Query: 688 KFCDKSDRSQYLGWDSGKTHIYCCHV 765
           KF  + DR +   WDS KTHIY CHV
Sbjct: 156 KFIKEEDRQRSFDWDSDKTHIYHCHV 181


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
           vinifera]
          Length = 943

 Score = 88.6 bits (218), Expect = 2e-15
 Identities = 43/86 (50%), Positives = 59/86 (68%)
 Frame = +1

Query: 508 SQQLMVLNKLEYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFESKIWITYGQ 687
           S QL+ L +LE+RK FL+LSYIG  + E +++   A EI  +K+LPM VFE+++W   G+
Sbjct: 99  SPQLVALGELEFRKAFLILSYIGELRPEDLLS---AEEILKLKNLPMGVFETEVWNNLGR 155

Query: 688 KFCDKSDRSQYLGWDSGKTHIYCCHV 765
           KF  + DR +   WDS KTHIY CHV
Sbjct: 156 KFIKEEDRQRSFDWDSDKTHIYHCHV 181


>ref|XP_006296898.1| hypothetical protein CARUB_v10012890mg [Capsella rubella]
           gi|482565607|gb|EOA29796.1| hypothetical protein
           CARUB_v10012890mg [Capsella rubella]
          Length = 998

 Score = 87.8 bits (216), Expect = 4e-15
 Identities = 60/252 (23%), Positives = 110/252 (43%)
 Frame = +1

Query: 10  IERIIKRICQEKNQPPLKYYARKMLAEIGEQASMELLTMILSSKKTITSFSGYVSYLIKR 189
           +E ++++I  +    P+    R+ L+ I E+ ++E L+ + ++    ++    + Y +K 
Sbjct: 29  VETLLEKIYGKHKHRPINLETRRKLSLISEELALEALSKVFNATYVKSTVDVLIKYFVKD 88

Query: 190 DYTIEAAKVLSAYGSPQVSTQTQRMLSPSSISPYISTQKLNGEXXXXXXXXXXXXXXXXX 369
             T++        GSP+ S     + SP +                              
Sbjct: 89  AATVD--------GSPRPSPDESPVQSPRT------------------------------ 110

Query: 370 XXKTDLQSICCELSFDDETQEKRSFSVKRQSSLAGEHREVAESTTVSQQLMVLNKLEYRK 549
             K   ++   E+S D E    +              RE    +     L+ L +LE++K
Sbjct: 111 PGKKSCRAFQAEVSLDLEIPSPKLL-----------RREETGGSNHIPPLVALGELEFKK 159

Query: 550 LFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFESKIWITYGQKFCDKSDRSQYLGW 729
           +FL+LSY+G + LE +      ++I   KDLPM  +E+++W   G+++C K +R + L  
Sbjct: 160 MFLLLSYLGGKPLEVI----SGDDIRQWKDLPMVSYEAEVWFQLGERYCSKKERRRSLEG 215

Query: 730 DSGKTHIYCCHV 765
           DS KTH Y CHV
Sbjct: 216 DSEKTHYYQCHV 227


>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
           gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
           Full=Probable RNA-dependent RNA polymerase 3;
           Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
           3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
           polymerase 3 [Arabidopsis thaliana]
          Length = 992

 Score = 85.1 bits (209), Expect = 2e-14
 Identities = 69/255 (27%), Positives = 113/255 (44%), Gaps = 2/255 (0%)
 Frame = +1

Query: 7   SIERIIKRICQEKNQP-PLKYYARKMLAEIGEQASMELLTMILSSKKTITSFSGYVSYLI 183
           S+E ++++I ++ N   P+    R+ L+ I E+ ++E L  + + K  + +  G + Y +
Sbjct: 20  SVETMLEKIYEKHNHRLPISVETRRKLSSISEELALETLRKVFN-KPYLKTLDGLIMYFV 78

Query: 184 KRDYTIEAAKVLSAYGSPQVSTQTQRMLSPSSISPYISTQKLNGEXXXXXXXXXXXXXXX 363
           K   T++ +  LS   SP  S +T     P+  S   S                      
Sbjct: 79  KGTVTVDGSPRLSPGESPVQSPRT-----PAKKSCRASQ--------------------- 112

Query: 364 XXXXKTDLQSICCELSFDDETQEKRSFSVKRQSSLAGEHREVAESTTVSQQLMVLNKLEY 543
                        ++S D ET   +              RE    +     L+ L +LE+
Sbjct: 113 -------------DVSLDLETPSPKFMK-----------REENGGSKYIPPLLALGELEF 148

Query: 544 RKLFLVLSYIGRQKL-EAVVTLDGANEIHSMKDLPMEVFESKIWITYGQKFCDKSDRSQY 720
           +K FL+LSYIG + L E V++ D   +I   KDLPM  +E+ +W   GQ++C   +R + 
Sbjct: 149 KKAFLLLSYIGGESLVEEVISGD---QIRKWKDLPMVSYEAAVWNRLGQRYCSPKERRRP 205

Query: 721 LGWDSGKTHIYCCHV 765
           L  DSG TH Y CHV
Sbjct: 206 LEGDSGMTHYYQCHV 220


>gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
          Length = 966

 Score = 85.1 bits (209), Expect = 2e-14
 Identities = 69/255 (27%), Positives = 113/255 (44%), Gaps = 2/255 (0%)
 Frame = +1

Query: 7   SIERIIKRICQEKNQP-PLKYYARKMLAEIGEQASMELLTMILSSKKTITSFSGYVSYLI 183
           S+E ++++I ++ N   P+    R+ L+ I E+ ++E L  + + K  + +  G + Y +
Sbjct: 20  SVETMLEKIYEKHNHRLPISVETRRKLSSISEELALETLRKVFN-KPYLKTLDGLIMYFV 78

Query: 184 KRDYTIEAAKVLSAYGSPQVSTQTQRMLSPSSISPYISTQKLNGEXXXXXXXXXXXXXXX 363
           K   T++ +  LS   SP  S +T     P+  S   S                      
Sbjct: 79  KGTVTVDGSPRLSPGESPVQSPRT-----PAKKSCRASQ--------------------- 112

Query: 364 XXXXKTDLQSICCELSFDDETQEKRSFSVKRQSSLAGEHREVAESTTVSQQLMVLNKLEY 543
                        ++S D ET   +              RE    +     L+ L +LE+
Sbjct: 113 -------------DVSLDLETPSPKFMK-----------REENGGSKYIPPLLALGELEF 148

Query: 544 RKLFLVLSYIGRQKL-EAVVTLDGANEIHSMKDLPMEVFESKIWITYGQKFCDKSDRSQY 720
           +K FL+LSYIG + L E V++ D   +I   KDLPM  +E+ +W   GQ++C   +R + 
Sbjct: 149 KKAFLLLSYIGGESLVEEVISGD---QIRKWKDLPMVSYEAAVWNRLGQRYCSPKERRRP 205

Query: 721 LGWDSGKTHIYCCHV 765
           L  DSG TH Y CHV
Sbjct: 206 LEGDSGMTHYYQCHV 220


>gb|ESW24973.1| hypothetical protein PHAVU_004G1764001g, partial [Phaseolus
           vulgaris]
          Length = 689

 Score = 84.7 bits (208), Expect = 3e-14
 Identities = 43/87 (49%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
 Frame = +1

Query: 508 SQQLMVLNKLEYRKLFLVLSYIGRQKLEAVVTLDGANEIHSMKDLPMEVFESKIWITYGQ 687
           S  L  L ++E+RK FL LSYIGR+ LE V + D    I S+KDLPM  FE  IW  +G+
Sbjct: 106 SSALHALGEMEFRKAFLCLSYIGRESLENVASADC---IRSLKDLPMATFEKTIWEAFGK 162

Query: 688 -KFCDKSDRSQYLGWDSGKTHIYCCHV 765
                +SDR  Y+ WDSG+TH+Y C+V
Sbjct: 163 DHIYSQSDRQVYVDWDSGRTHVYQCYV 189