BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00031513
         (821 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   363   4e-98
emb|CBI18448.3| unnamed protein product [Vitis vinifera]              363   4e-98
ref|XP_006353749.1| PREDICTED: RNA pseudouridine synthase 3, mit...   362   9e-98
ref|XP_004243668.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   362   9e-98
ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mit...   361   2e-97
gb|EOY26277.1| Pseudouridine synthase family protein [Theobroma ...   361   2e-97
ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citr...   360   3e-97
ref|XP_006436405.1| hypothetical protein CICLE_v10031422mg [Citr...   360   3e-97
gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis]           359   6e-97
gb|EMJ11188.1| hypothetical protein PRUPE_ppa005240mg [Prunus pe...   359   6e-97
gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis]           357   3e-96
ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [...   356   5e-96
dbj|BAD43982.1| unnamed protein product [Arabidopsis thaliana]        355   1e-95
ref|NP_178012.2| RNA pseudourine synthase 3 [Arabidopsis thalian...   355   1e-95
ref|XP_006389943.1| hypothetical protein EUTSA_v10018480mg [Eutr...   353   3e-95
ref|XP_006300371.1| hypothetical protein CARUB_v10022381mg [Caps...   352   1e-94
ref|XP_004300876.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   352   1e-94
ref|XP_002887761.1| hypothetical protein ARALYDRAFT_477057 [Arab...   351   2e-94
ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   350   5e-94
gb|AAC83020.1| Contains similarity to gi|1786244 hypothetical 24...   348   1e-93

>ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
           vinifera]
          Length = 479

 Score =  363 bits (932), Expect = 4e-98
 Identities = 176/219 (80%), Positives = 191/219 (87%)
 Frame = -2

Query: 820 AKPLSKEWNDSCEEMYQRYWALVIGSPKQKEGLICAPLTKVLLDDGETERVILANNSGLE 641
           AK LSK W+D+CE   QRYWALVIGSPKQKEG+I APL+KVLLDDG+TERVILAN SGLE
Sbjct: 261 AKSLSKAWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVILANQSGLE 320

Query: 640 ASQEAITEYRVLGPTINECSWIELRPYTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRW 461
           ASQEAITEYRVLGP IN CSWIEL P TSRKHQLRVHCAEALGTPIVGDYKYGWFVH RW
Sbjct: 321 ASQEAITEYRVLGPMINGCSWIELCPRTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRW 380

Query: 460 KQMPRVDFEPMTGEPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNVAKFIELHKRP 281
           KQMPRVD EP TG+PYK+RRPEGLDVQKGSVLSKVPLLHLHCRE++LPN+AKF+ +    
Sbjct: 381 KQMPRVDLEPTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFLPILDPK 440

Query: 280 FGNYHVDPEHDSKPDILRFVAPMPSHMKISWNLMSSYLV 164
             N +  P+   KPDILRFVA MP+HMKISWNLMSSYLV
Sbjct: 441 PKNQNQYPKLSLKPDILRFVASMPNHMKISWNLMSSYLV 479


>emb|CBI18448.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  363 bits (932), Expect = 4e-98
 Identities = 176/219 (80%), Positives = 191/219 (87%)
 Frame = -2

Query: 820 AKPLSKEWNDSCEEMYQRYWALVIGSPKQKEGLICAPLTKVLLDDGETERVILANNSGLE 641
           AK LSK W+D+CE   QRYWALVIGSPKQKEG+I APL+KVLLDDG+TERVILAN SGLE
Sbjct: 263 AKSLSKAWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVILANQSGLE 322

Query: 640 ASQEAITEYRVLGPTINECSWIELRPYTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRW 461
           ASQEAITEYRVLGP IN CSWIEL P TSRKHQLRVHCAEALGTPIVGDYKYGWFVH RW
Sbjct: 323 ASQEAITEYRVLGPMINGCSWIELCPRTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRW 382

Query: 460 KQMPRVDFEPMTGEPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNVAKFIELHKRP 281
           KQMPRVD EP TG+PYK+RRPEGLDVQKGSVLSKVPLLHLHCRE++LPN+AKF+ +    
Sbjct: 383 KQMPRVDLEPTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFLPILDPK 442

Query: 280 FGNYHVDPEHDSKPDILRFVAPMPSHMKISWNLMSSYLV 164
             N +  P+   KPDILRFVA MP+HMKISWNLMSSYLV
Sbjct: 443 PKNQNQYPKLSLKPDILRFVASMPNHMKISWNLMSSYLV 481


>ref|XP_006353749.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
           X1 [Solanum tuberosum] gi|565374397|ref|XP_006353750.1|
           PREDICTED: RNA pseudouridine synthase 3,
           mitochondrial-like isoform X2 [Solanum tuberosum]
           gi|565374399|ref|XP_006353751.1| PREDICTED: RNA
           pseudouridine synthase 3, mitochondrial-like isoform X3
           [Solanum tuberosum]
          Length = 475

 Score =  362 bits (929), Expect = 9e-98
 Identities = 171/219 (78%), Positives = 191/219 (87%)
 Frame = -2

Query: 820 AKPLSKEWNDSCEEMYQRYWALVIGSPKQKEGLICAPLTKVLLDDGETERVILANNSGLE 641
           +K LSK WND+C   YQRYWALVIGSPK+KEG+I APLTKVLLDDG TERV+LA  SGLE
Sbjct: 260 SKSLSKAWNDACGSTYQRYWALVIGSPKEKEGVISAPLTKVLLDDGRTERVMLAQQSGLE 319

Query: 640 ASQEAITEYRVLGPTINECSWIELRPYTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRW 461
           AS EA+TEYR+LGP IN CSWIELRP+TSRKHQ+RVHCAEALGTPIVGDYKYGWFVH +W
Sbjct: 320 ASDEAVTEYRLLGPMINGCSWIELRPHTSRKHQIRVHCAEALGTPIVGDYKYGWFVHRKW 379

Query: 460 KQMPRVDFEPMTGEPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNVAKFIELHKRP 281
           KQMPRVD EP TG+PY+L+RPEGLDVQKGSVLSKVPLLHLHCRE+VLPN+AKFIELH R 
Sbjct: 380 KQMPRVDVEPTTGKPYRLKRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRK 439

Query: 280 FGNYHVDPEHDSKPDILRFVAPMPSHMKISWNLMSSYLV 164
              +    ++ SKPD+LRFVAPMPS MKISW LMSS L+
Sbjct: 440 TKKH---SDYSSKPDLLRFVAPMPSPMKISWKLMSSCLI 475


>ref|XP_004243668.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Solanum
           lycopersicum]
          Length = 475

 Score =  362 bits (929), Expect = 9e-98
 Identities = 172/219 (78%), Positives = 191/219 (87%)
 Frame = -2

Query: 820 AKPLSKEWNDSCEEMYQRYWALVIGSPKQKEGLICAPLTKVLLDDGETERVILANNSGLE 641
           +K LSK WND+C   YQRYWALVIGSPK KEG+I APLTKVLLDDG TERV+LA  SGLE
Sbjct: 260 SKSLSKAWNDACGSTYQRYWALVIGSPKVKEGVISAPLTKVLLDDGRTERVMLAQQSGLE 319

Query: 640 ASQEAITEYRVLGPTINECSWIELRPYTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRW 461
           AS EA+TEYR+LGP IN CSWIELRP+TSRKHQLRVHCAEALGTPIVGDYKYGWFVH +W
Sbjct: 320 ASDEAVTEYRLLGPMINGCSWIELRPHTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRKW 379

Query: 460 KQMPRVDFEPMTGEPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNVAKFIELHKRP 281
           KQMPRVD EP+TG+PY+L+RPEGLDVQKGSVLSKVPLLHLHCRE+VLPN+AKFIELH R 
Sbjct: 380 KQMPRVDVEPITGKPYRLKRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSR- 438

Query: 280 FGNYHVDPEHDSKPDILRFVAPMPSHMKISWNLMSSYLV 164
                 + ++ SKPD+LRFVAPMPS MKISW LMSS L+
Sbjct: 439 --KTRKNTDYSSKPDLLRFVAPMPSPMKISWKLMSSCLI 475


>ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like [Citrus
           sinensis]
          Length = 471

 Score =  361 bits (927), Expect = 2e-97
 Identities = 175/222 (78%), Positives = 194/222 (87%), Gaps = 3/222 (1%)
 Frame = -2

Query: 820 AKPLSKEWNDSCEEMYQRYWALVIGSPKQKEGLICAPLTKVLLDDGETERVILANNSGLE 641
           +K LSK WND+CE MYQRYWALVIGSP++K+G+I APL+KVLLDDG+TER+ILA NSGLE
Sbjct: 252 SKSLSKAWNDACEAMYQRYWALVIGSPREKQGIIRAPLSKVLLDDGKTERIILAQNSGLE 311

Query: 640 ASQEAITEYRVLGPTINECSWIELRPYTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRW 461
           ASQEA+TEYRVLGP IN CSWIELRP T RKHQLRVHCAEALGTPIVGDYKYGWFVH RW
Sbjct: 312 ASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRW 371

Query: 460 KQMPRVDFEPMTGEPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNVAKFIELHKRP 281
           KQMPRVD EP +G+PYKLRRP+GLDVQKGSVLSKVPLLHLHCRE+VLPN+AKFI +  + 
Sbjct: 372 KQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFINVLNQK 431

Query: 280 FGNYHVDPEHDSK---PDILRFVAPMPSHMKISWNLMSSYLV 164
             N  + P   SK   PD+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 432 SDN--LFPTLSSKPDGPDLLRFVASMPSHMKISWNLMSSYLV 471


>gb|EOY26277.1| Pseudouridine synthase family protein [Theobroma cacao]
          Length = 471

 Score =  361 bits (926), Expect = 2e-97
 Identities = 172/218 (78%), Positives = 188/218 (86%)
 Frame = -2

Query: 817 KPLSKEWNDSCEEMYQRYWALVIGSPKQKEGLICAPLTKVLLDDGETERVILANNSGLEA 638
           K   K WND+C+  YQR+WALVIG+PK+KEGLICAPL+K+LLDDG+TERVILA N GLEA
Sbjct: 256 KSSCKAWNDACDVKYQRFWALVIGTPKEKEGLICAPLSKILLDDGKTERVILAQNVGLEA 315

Query: 637 SQEAITEYRVLGPTINECSWIELRPYTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWK 458
           SQEAITEYRVLGP IN CSWIELRP TSRKHQLRVHCAEALGTPIVGDYKYGWFVH RWK
Sbjct: 316 SQEAITEYRVLGPMINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWK 375

Query: 457 QMPRVDFEPMTGEPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNVAKFIELHKRPF 278
           QMPRVD EP TG+PYKLRRPEGLDVQKGSVLSKVPLLHLHCRE+VLPN+AKF+ +  +  
Sbjct: 376 QMPRVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLPVLNK-- 433

Query: 277 GNYHVDPEHDSKPDILRFVAPMPSHMKISWNLMSSYLV 164
               + P    KPD+LRFVA MP HMKISWNLMSSYLV
Sbjct: 434 NTETLPPALSMKPDLLRFVATMPKHMKISWNLMSSYLV 471


>ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citrus clementina]
           gi|557538602|gb|ESR49646.1| hypothetical protein
           CICLE_v10031422mg [Citrus clementina]
          Length = 471

 Score =  360 bits (925), Expect = 3e-97
 Identities = 175/222 (78%), Positives = 193/222 (86%), Gaps = 3/222 (1%)
 Frame = -2

Query: 820 AKPLSKEWNDSCEEMYQRYWALVIGSPKQKEGLICAPLTKVLLDDGETERVILANNSGLE 641
           +K LSK WND+CE MYQRYWALVIGSPK+K+G+I APL+KVLLDDG+TER+ILA NSGLE
Sbjct: 252 SKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLE 311

Query: 640 ASQEAITEYRVLGPTINECSWIELRPYTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRW 461
           ASQEA+TEYRVLGP IN CSWIELRP T RKHQLRVHCAEALGTPIVGDYKYGWFVH RW
Sbjct: 312 ASQEAVTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRW 371

Query: 460 KQMPRVDFEPMTGEPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNVAKFIELHKRP 281
           KQMPRVD EP +G+PYKLRRP+GLDVQKGSVLSKVPLLHLHCRE+VLPN+AKF  +  + 
Sbjct: 372 KQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFRNVLNQK 431

Query: 280 FGNYHVDPEHDSK---PDILRFVAPMPSHMKISWNLMSSYLV 164
             N  + P   SK   PD+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 432 SDN--LFPTLSSKPDGPDLLRFVASMPSHMKISWNLMSSYLV 471


>ref|XP_006436405.1| hypothetical protein CICLE_v10031422mg [Citrus clementina]
           gi|557538601|gb|ESR49645.1| hypothetical protein
           CICLE_v10031422mg [Citrus clementina]
          Length = 343

 Score =  360 bits (925), Expect = 3e-97
 Identities = 175/222 (78%), Positives = 193/222 (86%), Gaps = 3/222 (1%)
 Frame = -2

Query: 820 AKPLSKEWNDSCEEMYQRYWALVIGSPKQKEGLICAPLTKVLLDDGETERVILANNSGLE 641
           +K LSK WND+CE MYQRYWALVIGSPK+K+G+I APL+KVLLDDG+TER+ILA NSGLE
Sbjct: 124 SKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLE 183

Query: 640 ASQEAITEYRVLGPTINECSWIELRPYTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRW 461
           ASQEA+TEYRVLGP IN CSWIELRP T RKHQLRVHCAEALGTPIVGDYKYGWFVH RW
Sbjct: 184 ASQEAVTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRW 243

Query: 460 KQMPRVDFEPMTGEPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNVAKFIELHKRP 281
           KQMPRVD EP +G+PYKLRRP+GLDVQKGSVLSKVPLLHLHCRE+VLPN+AKF  +  + 
Sbjct: 244 KQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFRNVLNQK 303

Query: 280 FGNYHVDPEHDSK---PDILRFVAPMPSHMKISWNLMSSYLV 164
             N  + P   SK   PD+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 304 SDN--LFPTLSSKPDGPDLLRFVASMPSHMKISWNLMSSYLV 343


>gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis]
          Length = 449

 Score =  359 bits (922), Expect = 6e-97
 Identities = 169/214 (78%), Positives = 190/214 (88%)
 Frame = -2

Query: 805 KEWNDSCEEMYQRYWALVIGSPKQKEGLICAPLTKVLLDDGETERVILANNSGLEASQEA 626
           K WND+CE  YQ+YWALVIGSPK+KEG+ICAPL+KVLL+DG+TERVILA+ +G +ASQEA
Sbjct: 238 KAWNDACEAKYQKYWALVIGSPKEKEGIICAPLSKVLLNDGKTERVILAHQTGFQASQEA 297

Query: 625 ITEYRVLGPTINECSWIELRPYTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMPR 446
           ITEYRVLGP IN CSW+ELRP TSRKHQLRVHCAEALGTPIVGDYKYGWFVH RWKQMP+
Sbjct: 298 ITEYRVLGPMINGCSWLELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQ 357

Query: 445 VDFEPMTGEPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNVAKFIELHKRPFGNYH 266
           V+ EP TG+PYKLRRPEGLDVQKGSV+SKVPLLHL CRE+VLPN+AKF+ +  R   N  
Sbjct: 358 VNIEPTTGKPYKLRRPEGLDVQKGSVMSKVPLLHLQCRELVLPNIAKFLRVFDRKSQNQ- 416

Query: 265 VDPEHDSKPDILRFVAPMPSHMKISWNLMSSYLV 164
            DP  +SKPD+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 417 -DPALESKPDLLRFVARMPSHMKISWNLMSSYLV 449


>gb|EMJ11188.1| hypothetical protein PRUPE_ppa005240mg [Prunus persica]
          Length = 471

 Score =  359 bits (922), Expect = 6e-97
 Identities = 173/218 (79%), Positives = 190/218 (87%)
 Frame = -2

Query: 817 KPLSKEWNDSCEEMYQRYWALVIGSPKQKEGLICAPLTKVLLDDGETERVILANNSGLEA 638
           K   + W+D+CE  YQRYWALVIGSPK+KEGLICAPL+KVLLD+G+TERVILA+ SGLEA
Sbjct: 256 KSSCQAWDDACEARYQRYWALVIGSPKEKEGLICAPLSKVLLDNGKTERVILAHQSGLEA 315

Query: 637 SQEAITEYRVLGPTINECSWIELRPYTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWK 458
           SQ+AIT+YRVLGPTIN CSWIELRP TSRKHQLRVHCAEALGTPIVGDYKYGWFVH RWK
Sbjct: 316 SQKAITQYRVLGPTINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWK 375

Query: 457 QMPRVDFEPMTGEPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNVAKFIELHKRPF 278
           QMP VD EP +G PYKLRRP GLDVQKGSVLSKVPLLHLHCRE+VLPN+AKF+ +  +  
Sbjct: 376 QMPHVDVEPTSGLPYKLRRPAGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLLILDQKL 435

Query: 277 GNYHVDPEHDSKPDILRFVAPMPSHMKISWNLMSSYLV 164
            + H  P   SKPDILRFVA MPSHMKISWNLMSSYLV
Sbjct: 436 DSLH--PAVSSKPDILRFVASMPSHMKISWNLMSSYLV 471


>gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis]
          Length = 449

 Score =  357 bits (916), Expect = 3e-96
 Identities = 168/214 (78%), Positives = 189/214 (88%)
 Frame = -2

Query: 805 KEWNDSCEEMYQRYWALVIGSPKQKEGLICAPLTKVLLDDGETERVILANNSGLEASQEA 626
           K WND+CE  YQ+YWALVIGSPK+KEG+ICAPL+KVLL+DG+TERVILA+ +G +ASQEA
Sbjct: 238 KAWNDACEAKYQKYWALVIGSPKEKEGIICAPLSKVLLNDGKTERVILAHQTGFQASQEA 297

Query: 625 ITEYRVLGPTINECSWIELRPYTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMPR 446
           ITEYRVLGP IN CSW+ELRP TSRKHQLRVHCAEALGTPIVGDYKYGW VH RWKQMP+
Sbjct: 298 ITEYRVLGPMINGCSWLELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWLVHKRWKQMPQ 357

Query: 445 VDFEPMTGEPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNVAKFIELHKRPFGNYH 266
           V+ EP TG+PYKLRRPEGLDVQKGSV+SKVPLLHL CRE+VLPN+AKF+ +  R   N  
Sbjct: 358 VNIEPTTGKPYKLRRPEGLDVQKGSVMSKVPLLHLQCRELVLPNIAKFLRVFDRKSENQ- 416

Query: 265 VDPEHDSKPDILRFVAPMPSHMKISWNLMSSYLV 164
            DP  +SKPD+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 417 -DPALESKPDLLRFVARMPSHMKISWNLMSSYLV 449


>ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223533842|gb|EEF35573.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 468

 Score =  356 bits (914), Expect = 5e-96
 Identities = 170/214 (79%), Positives = 187/214 (87%)
 Frame = -2

Query: 805 KEWNDSCEEMYQRYWALVIGSPKQKEGLICAPLTKVLLDDGETERVILANNSGLEASQEA 626
           K WND+C+  YQRYWALVIGSPK+KEGLI APL+KVLL+DG+TERV+LA +SGLEASQEA
Sbjct: 257 KAWNDACKATYQRYWALVIGSPKEKEGLIRAPLSKVLLNDGKTERVVLAQHSGLEASQEA 316

Query: 625 ITEYRVLGPTINECSWIELRPYTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMPR 446
           +TEYRVLGP IN CSWIELRP TSRKHQLRVHCAEALGTPIVGDYKYGW VH RWKQMPR
Sbjct: 317 LTEYRVLGPRINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWCVHQRWKQMPR 376

Query: 445 VDFEPMTGEPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNVAKFIELHKRPFGNYH 266
           VD EP +G+PYKLRRP GLDVQKGSVLSKVPLLHLHCRE VLPN+AKF+ +      N H
Sbjct: 377 VDIEPFSGKPYKLRRPAGLDVQKGSVLSKVPLLHLHCREFVLPNIAKFLAVLNEKSENIH 436

Query: 265 VDPEHDSKPDILRFVAPMPSHMKISWNLMSSYLV 164
             P  D+KPD+LRFVA MP+HMKISWNLMSSYLV
Sbjct: 437 --PALDAKPDLLRFVASMPTHMKISWNLMSSYLV 468


>dbj|BAD43982.1| unnamed protein product [Arabidopsis thaliana]
          Length = 326

 Score =  355 bits (910), Expect = 1e-95
 Identities = 169/217 (77%), Positives = 186/217 (85%), Gaps = 3/217 (1%)
 Frame = -2

Query: 805 KEWNDSCEEMYQRYWALVIGSPKQKEGLICAPLTKVLLDDGETERVILANNSGLEASQEA 626
           K WN +CE MYQ+YWALVIGSPK+KEGLI APL+KVLLDDG+T+RV+LA  SG EASQ+A
Sbjct: 114 KAWNKACEAMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFEASQDA 173

Query: 625 ITEYRVLGPTINECSWIELRPYTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMPR 446
           ITEY+VLGP IN CSW+ELRP TSRKHQLRVHCAEALGTPIVGDYKYGWFVH RWKQMP+
Sbjct: 174 ITEYKVLGPKINGCSWVELRPITSRKHQLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQ 233

Query: 445 VDFEPMTGEPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNVAKFIELHKRPFGNYH 266
           VD EP TG+PYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPN+AKF+ +         
Sbjct: 234 VDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHV----MNQQE 289

Query: 265 VDPEHD---SKPDILRFVAPMPSHMKISWNLMSSYLV 164
            +P H     KPD+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 290 TEPLHTGIIDKPDLLRFVASMPSHMKISWNLMSSYLV 326


>ref|NP_178012.2| RNA pseudourine synthase 3 [Arabidopsis thaliana]
           gi|75110951|sp|Q5XET6.1|PUS3_ARATH RecName: Full=RNA
           pseudouridine synthase 3, mitochondrial; AltName:
           Full=RNA pseudouridylate synthase 3; AltName:
           Full=RNA-uridine isomerase 3; Flags: Precursor
           gi|53850479|gb|AAU95416.1| At1g78910 [Arabidopsis
           thaliana] gi|56790228|gb|AAW30031.1| At1g78910
           [Arabidopsis thaliana] gi|332198052|gb|AEE36173.1| RNA
           pseudourine synthase 3 [Arabidopsis thaliana]
          Length = 478

 Score =  355 bits (910), Expect = 1e-95
 Identities = 169/217 (77%), Positives = 186/217 (85%), Gaps = 3/217 (1%)
 Frame = -2

Query: 805 KEWNDSCEEMYQRYWALVIGSPKQKEGLICAPLTKVLLDDGETERVILANNSGLEASQEA 626
           K WN +CE MYQ+YWALVIGSPK+KEGLI APL+KVLLDDG+T+RV+LA  SG EASQ+A
Sbjct: 266 KAWNKACEAMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFEASQDA 325

Query: 625 ITEYRVLGPTINECSWIELRPYTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMPR 446
           ITEY+VLGP IN CSW+ELRP TSRKHQLRVHCAEALGTPIVGDYKYGWFVH RWKQMP+
Sbjct: 326 ITEYKVLGPKINGCSWVELRPITSRKHQLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQ 385

Query: 445 VDFEPMTGEPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNVAKFIELHKRPFGNYH 266
           VD EP TG+PYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPN+AKF+ +         
Sbjct: 386 VDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHV----MNQQE 441

Query: 265 VDPEHD---SKPDILRFVAPMPSHMKISWNLMSSYLV 164
            +P H     KPD+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 442 TEPLHTGIIDKPDLLRFVASMPSHMKISWNLMSSYLV 478


>ref|XP_006389943.1| hypothetical protein EUTSA_v10018480mg [Eutrema salsugineum]
           gi|557086377|gb|ESQ27229.1| hypothetical protein
           EUTSA_v10018480mg [Eutrema salsugineum]
          Length = 478

 Score =  353 bits (907), Expect = 3e-95
 Identities = 167/217 (76%), Positives = 187/217 (86%), Gaps = 3/217 (1%)
 Frame = -2

Query: 805 KEWNDSCEEMYQRYWALVIGSPKQKEGLICAPLTKVLLDDGETERVILANNSGLEASQEA 626
           K WN +CE MYQ+YWALVIGSPK KEG+I AP++KVLLDDG+T+RV+LA  SG EASQEA
Sbjct: 266 KAWNKACEAMYQQYWALVIGSPKDKEGVISAPISKVLLDDGKTDRVVLARGSGFEASQEA 325

Query: 625 ITEYRVLGPTINECSWIELRPYTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMPR 446
           ITEYRVLGP IN CSW+ELRP TSRKHQLRVHCAEALGTPIVGDYKYGWFVH +WKQMP+
Sbjct: 326 ITEYRVLGPMINGCSWLELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHKKWKQMPQ 385

Query: 445 VDFEPMTGEPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNVAKFIELHKRPFGNYH 266
           VD EP +G+PYKLRRPEGLD+QKGSVLSKVPLLHLHCREMVLPN+AKF+ +      N  
Sbjct: 386 VDIEPTSGKPYKLRRPEGLDIQKGSVLSKVPLLHLHCREMVLPNIAKFLHV----LNNQE 441

Query: 265 VDPEHD---SKPDILRFVAPMPSHMKISWNLMSSYLV 164
           +D  H    SKPD+LRFVA MPSHMKISWN+MSSYLV
Sbjct: 442 IDSLHPGIISKPDLLRFVASMPSHMKISWNIMSSYLV 478


>ref|XP_006300371.1| hypothetical protein CARUB_v10022381mg [Capsella rubella]
           gi|482569081|gb|EOA33269.1| hypothetical protein
           CARUB_v10022381mg [Capsella rubella]
          Length = 478

 Score =  352 bits (902), Expect = 1e-94
 Identities = 171/218 (78%), Positives = 185/218 (84%), Gaps = 4/218 (1%)
 Frame = -2

Query: 805 KEWNDSCEEMYQRYWALVIGSPKQKEGLICAPLTKVLLDDGETERVILANNSGLEASQEA 626
           K WN SCE MYQ+YWALVIGSPK+KEGLI APL+KVLLDDG+T+RV+LA  S  EASQEA
Sbjct: 266 KAWNKSCEAMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSCFEASQEA 325

Query: 625 ITEYRVLGPTINECSWIELRPYTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMPR 446
           ITEYRVLGP IN CSW+ELRP TSRKHQLRVHCAEALGTPIVGDYKYGWFVH RWKQMP+
Sbjct: 326 ITEYRVLGPMINGCSWLELRPITSRKHQLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQ 385

Query: 445 VDFEPMTGEPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNVAKFIEL----HKRPF 278
           VD EP TG+PYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPN+AKF+ +       P 
Sbjct: 386 VDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHVLNQQEAEPI 445

Query: 277 GNYHVDPEHDSKPDILRFVAPMPSHMKISWNLMSSYLV 164
               +D     KPD+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 446 RTGIID-----KPDLLRFVASMPSHMKISWNLMSSYLV 478


>ref|XP_004300876.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Fragaria
           vesca subsp. vesca]
          Length = 469

 Score =  352 bits (902), Expect = 1e-94
 Identities = 171/219 (78%), Positives = 187/219 (85%), Gaps = 1/219 (0%)
 Frame = -2

Query: 817 KPLSKEWNDSCEEMYQRYWALVIGSPKQKEGLICAPLTKVLLDDGETERVILANNSGLEA 638
           K   + WND+C    QRYWALVIGSPK+KEGLICAPLTKVLLDDG+TERVILA+ SGLEA
Sbjct: 254 KSSCRAWNDACRAKCQRYWALVIGSPKEKEGLICAPLTKVLLDDGKTERVILAHQSGLEA 313

Query: 637 SQEAITEYRVLGPTINECSWIELRPYTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWK 458
           SQ A+T+YRVLGPTIN CSWIEL+P TSRKHQLRVHCAEALGTPIVGDYKYGWFVH RWK
Sbjct: 314 SQPALTQYRVLGPTINGCSWIELQPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWK 373

Query: 457 QMPRVDFEPMTGEPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNVAKFIELHKRPF 278
           QMP +D EP TG  YKLRRP GLDVQKGSV+SKVPLLHLHCRE+VLPN+AKF+ L  +  
Sbjct: 374 QMPHIDIEPATGLQYKLRRPAGLDVQKGSVVSKVPLLHLHCRELVLPNIAKFLCLLDQKL 433

Query: 277 GN-YHVDPEHDSKPDILRFVAPMPSHMKISWNLMSSYLV 164
            N Y VD    SKPD+LRFVA MP+HMKISWNLMSSYLV
Sbjct: 434 DNRYTVD---SSKPDVLRFVASMPTHMKISWNLMSSYLV 469


>ref|XP_002887761.1| hypothetical protein ARALYDRAFT_477057 [Arabidopsis lyrata subsp.
           lyrata] gi|297333602|gb|EFH64020.1| hypothetical protein
           ARALYDRAFT_477057 [Arabidopsis lyrata subsp. lyrata]
          Length = 477

 Score =  351 bits (900), Expect = 2e-94
 Identities = 170/218 (77%), Positives = 185/218 (84%), Gaps = 4/218 (1%)
 Frame = -2

Query: 805 KEWNDSCEEMYQRYWALVIGSPKQKEGLICAPLTKVLLDDGETERVILANNSGLEASQEA 626
           K WN +CE MYQ+YWALVIGSPK+KEGLI APL+KVLLDDG+T+RV+LA  SG EASQEA
Sbjct: 265 KAWNKACEAMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFEASQEA 324

Query: 625 ITEYRVLGPTINECSWIELRPYTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMPR 446
           ITEYRVLGP IN CSW+ELRP TSRKHQLRVHCAEALGT IVGDYKYGWFVH RWKQMP+
Sbjct: 325 ITEYRVLGPMINGCSWLELRPITSRKHQLRVHCAEALGTSIVGDYKYGWFVHKRWKQMPQ 384

Query: 445 VDFEPMTGEPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNVAKFIEL----HKRPF 278
           VD EP TG+PYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPN+AKF+ +       P 
Sbjct: 385 VDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHVLNQQETEPL 444

Query: 277 GNYHVDPEHDSKPDILRFVAPMPSHMKISWNLMSSYLV 164
               +D     KPD+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 445 RTGIID-----KPDLLRFVASMPSHMKISWNLMSSYLV 477


>ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like isoform
           X1 [Cicer arietinum]
          Length = 479

 Score =  350 bits (897), Expect = 5e-94
 Identities = 163/218 (74%), Positives = 188/218 (86%)
 Frame = -2

Query: 817 KPLSKEWNDSCEEMYQRYWALVIGSPKQKEGLICAPLTKVLLDDGETERVILANNSGLEA 638
           K   K WND+CE  YQRYWALVIG+PK+KEG+I APL+KVLL+DG+TERVILA+ S +E 
Sbjct: 264 KSSCKAWNDACESTYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERVILAHESSIEP 323

Query: 637 SQEAITEYRVLGPTINECSWIELRPYTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWK 458
            QEA+TEYRVLGP IN CSW+ELRP T RKHQLRVHCAEALGTPIVGDYKYGWFVH+RWK
Sbjct: 324 HQEAVTEYRVLGPKINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRWK 383

Query: 457 QMPRVDFEPMTGEPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNVAKFIELHKRPF 278
           QMPRVD EP TG+PYKLRRPEGLDVQKGSVLSKVPLLHLHCRE+ LPN+AKF+ + ++  
Sbjct: 384 QMPRVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELALPNIAKFLNVLEK-- 441

Query: 277 GNYHVDPEHDSKPDILRFVAPMPSHMKISWNLMSSYLV 164
            +  +DP    +PD+LRFVA MP+HM+ISWNLMSSYLV
Sbjct: 442 SSQQLDPSLSLQPDVLRFVATMPNHMRISWNLMSSYLV 479


>gb|AAC83020.1| Contains similarity to gi|1786244 hypothetical 24.9 kD protein in
           surA-hepA intergenic region yab0 from Escherichia coli
           genome gb|AE000116, and to hypothetical YABO family
           PF|00849 [Arabidopsis thaliana]
          Length = 491

 Score =  348 bits (893), Expect = 1e-93
 Identities = 169/223 (75%), Positives = 186/223 (83%), Gaps = 9/223 (4%)
 Frame = -2

Query: 805 KEWNDSCEEMYQRYWALVIGSPKQKEGLICAPLTKVLLDDGETERVILANNSGLEASQEA 626
           K WN +CE MYQ+YWALVIGSPK+KEGLI APL+KVLLDDG+T+RV+LA  SG EASQ+A
Sbjct: 273 KAWNKACEAMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFEASQDA 332

Query: 625 ITEYRVLGPTINECSWIELRPYTSRKHQ------LRVHCAEALGTPIVGDYKYGWFVHNR 464
           ITEY+VLGP IN CSW+ELRP TSRKHQ      LRVHCAEALGTPIVGDYKYGWFVH R
Sbjct: 333 ITEYKVLGPKINGCSWVELRPITSRKHQPPSKKQLRVHCAEALGTPIVGDYKYGWFVHKR 392

Query: 463 WKQMPRVDFEPMTGEPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNVAKFIELHKR 284
           WKQMP+VD EP TG+PYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPN+AKF+ +   
Sbjct: 393 WKQMPQVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHV--- 449

Query: 283 PFGNYHVDPEHD---SKPDILRFVAPMPSHMKISWNLMSSYLV 164
                  +P H     KPD+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 450 -MNQQETEPLHTGIIDKPDLLRFVASMPSHMKISWNLMSSYLV 491