BLASTX nr result
ID: Rehmannia23_contig00030736
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia23_contig00030736
(458 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADJ18449.1| gag/pol protein [Bryonia dioica] 49 2e-12
emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera] 47 1e-11
emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera] 44 1e-10
gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subc... 47 4e-09
emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera] 41 1e-08
emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera] 42 2e-08
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc... 46 3e-08
gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group] 46 3e-08
emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group] 48 4e-07
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-... 45 6e-07
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 45 7e-07
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc... 47 1e-06
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc... 44 2e-06
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group] 44 2e-06
gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subc... 43 3e-06
gb|AAX96622.1| retrotransposon protein, putative, Ty1-copia sub-... 45 4e-06
>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
Length = 1292
Score = 48.5 bits (114), Expect(3) = 2e-12
Identities = 22/38 (57%), Positives = 28/38 (73%)
Frame = +3
Query: 147 YTILCTRLDI*YTIGITSQFQSNPEMFH*IIVKNLLKY 260
Y +LCTR DI Y++GI S++QSNP H VKN+LKY
Sbjct: 1113 YAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKY 1150
Score = 38.1 bits (87), Expect(3) = 2e-12
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +2
Query: 23 RMQDSKKRYLPT*YGVVLSKEDCLKAPQEEKT*DAFPMPLQVYNIVY 163
+MQ+SKK LP +G+ LSKE C K PQE + P V +++Y
Sbjct: 1067 KMQNSKKGQLPFRHGIHLSKEQCPKTPQEVEDMRNIPYSSAVGSLMY 1113
Score = 30.4 bits (67), Expect(3) = 2e-12
Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 274 MFVYLGGDKI-DNYTDSDF*LDTNTRKSISGSTCIL 378
M VY D I YTDSDF D + RKS SGS L
Sbjct: 1158 MLVYGAKDLILTGYTDSDFQSDKDARKSTSGSVFTL 1193
>emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]
Length = 668
Score = 47.0 bits (110), Expect(3) = 1e-11
Identities = 19/38 (50%), Positives = 29/38 (76%)
Frame = +3
Query: 147 YTILCTRLDI*YTIGITSQFQSNPEMFH*IIVKNLLKY 260
Y +LCTR DI + +G+ S++QSNP + H + VK++LKY
Sbjct: 453 YAMLCTRPDICFAVGVVSRYQSNPGLDHWVAVKHILKY 490
Score = 38.9 bits (89), Expect(3) = 1e-11
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +2
Query: 26 MQDSKKRYLPT*YGVVLSKEDCLKAPQEEKT*DAFPMPLQVYNIVY 163
M++SKK LP+ +GV LSKE C K PQ+E+ P V +++Y
Sbjct: 408 MENSKKGNLPSRHGVHLSKEQCPKTPQDEEKMRRVPYASAVGSLMY 453
Score = 28.1 bits (61), Expect(3) = 1e-11
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 274 MFVYLGGDKID-NYTDSDF*LDTNTRKSIS 360
M VY G + I YTDSDF D ++RKS S
Sbjct: 498 MLVYSGRELIPIGYTDSDFQSDRDSRKSTS 527
>emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]
Length = 1285
Score = 43.9 bits (102), Expect(3) = 1e-10
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +3
Query: 147 YTILCTRLDI*YTIGITSQFQSNPEMFH*IIVKNLLKY 260
Y +LCTR DI + +G+ S+FQSNP H VK+++KY
Sbjct: 1070 YAMLCTRPDIYFAVGMVSRFQSNPGREHWTAVKHIIKY 1107
Score = 37.4 bits (85), Expect(3) = 1e-10
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +2
Query: 26 MQDSKKRYLPT*YGVVLSKEDCLKAPQEEKT*DAFPMPLQVYNIVY 163
MQ SKK +LP +G+VLSK+ K P+E ++ A P V +++Y
Sbjct: 1025 MQGSKKGFLPFRHGIVLSKDQSPKTPEEIESMKAVPYASAVGSLMY 1070
Score = 29.3 bits (64), Expect(3) = 1e-10
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 310 YTDSDF*LDTNTRKSISGSTCIL 378
YTDSDF D ++RKS SG+ +L
Sbjct: 1128 YTDSDFQSDQDSRKSTSGNVFVL 1150
>gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 932
Score = 46.6 bits (109), Expect(3) = 4e-09
Identities = 21/38 (55%), Positives = 27/38 (71%)
Frame = +3
Query: 147 YTILCTRLDI*YTIGITSQFQSNPEMFH*IIVKNLLKY 260
Y +LCTR D+ Y + TSQ+QS+P H I VKN+LKY
Sbjct: 727 YAMLCTRPDVPYALSATSQYQSDPGESHWIAVKNILKY 764
Score = 33.5 bits (75), Expect(3) = 4e-09
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 26 MQDSKKRYLPT*YGVVLSKEDCLKAPQEEKT*DAFPMPLQVYNIVY 163
MQDSKK +LP +G+ L K C + E P + +I+Y
Sbjct: 682 MQDSKKGFLPLSHGINLGKNQCPQTTDERNKMSVIPYASAIGSIMY 727
Score = 25.4 bits (54), Expect(3) = 4e-09
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +1
Query: 274 MFVYLGGDK---IDNYTDSDF*LDTNTRKSISG 363
MF+ GG + ++NYTD+ F D + +S SG
Sbjct: 771 MFLIYGGQEELVVNNYTDASFQTDKDDFRSQSG 803
>emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera]
Length = 633
Score = 40.8 bits (94), Expect(3) = 1e-08
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +3
Query: 147 YTILCTRLDI*YTIGITSQFQSNPEMFH*IIVKNLLKY 260
Y +LCTR DI + +G+ S+FQSN H VK+++KY
Sbjct: 418 YAMLCTRPDICFAVGMVSRFQSNXGREHWXAVKHIIKY 455
Score = 35.4 bits (80), Expect(3) = 1e-08
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +2
Query: 26 MQDSKKRYLPT*YGVVLSKEDCLKAPQEEKT*DAFPMPLQVYNIVY 163
MQ SKK +LP +G+ LSK+ K P+E ++ A P V +++Y
Sbjct: 373 MQGSKKGFLPFRHGIXLSKDQSPKTPEEIESMKAVPYASAVGSLMY 418
Score = 27.7 bits (60), Expect(3) = 1e-08
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 310 YTDSDF*LDTNTRKSISGSTCIL 378
YTDSDF D ++RKS SG+ L
Sbjct: 476 YTDSDFQSDQDSRKSTSGNVFXL 498
>emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
Length = 1544
Score = 41.6 bits (96), Expect(3) = 2e-08
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +3
Query: 147 YTILCTRLDI*YTIGITSQFQSNPEMFH*IIVKNLLKY 260
Y +LCTR DI + +G+ S+FQ NP H VK+++KY
Sbjct: 1329 YAMLCTRPDICFAVGMVSRFQFNPGREHWTAVKHIIKY 1366
Score = 32.0 bits (71), Expect(3) = 2e-08
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +2
Query: 35 SKKRYLPT*YGVVLSKEDCLKAPQEEKT*DAFPMPLQVYNIVY 163
S K +LP +G+VLSK+ K P+E ++ A P V +++Y
Sbjct: 1287 SNKGFLPFRHGIVLSKDQSPKTPEEIESMKAVPYASAVGSLMY 1329
Score = 29.3 bits (64), Expect(3) = 2e-08
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 310 YTDSDF*LDTNTRKSISGSTCIL 378
YTDSDF D ++RKS SG+ +L
Sbjct: 1387 YTDSDFQSDQDSRKSTSGNVFVL 1409
>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1142
Score = 45.8 bits (107), Expect(2) = 3e-08
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +3
Query: 147 YTILCTRLDI*YTIGITSQFQSNPEMFH*IIVKNLLKY 260
Y +LCTR D+ Y + TS++QS+P H I VKN+LKY
Sbjct: 1026 YAMLCTRPDVSYVLSATSRYQSDPSESHWIAVKNILKY 1063
Score = 37.4 bits (85), Expect(2) = 3e-08
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 26 MQDSKKRYLPT*YGVVLSKEDCLKAPQEEKT*DAFPMPLQVYNIVY 163
MQDSKK +LP +G+ L+K CL+ E+ P + +I+Y
Sbjct: 981 MQDSKKGFLPMSHGINLNKNQCLQTTNEQNKMSVIPYASAIGSIMY 1026
>gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1084
Score = 45.8 bits (107), Expect(2) = 3e-08
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +3
Query: 147 YTILCTRLDI*YTIGITSQFQSNPEMFH*IIVKNLLKY 260
Y +LCTR D+ Y + TS++QS+P H I VKN+LKY
Sbjct: 968 YAMLCTRPDVSYVLSATSRYQSDPSESHWIAVKNILKY 1005
Score = 37.4 bits (85), Expect(2) = 3e-08
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 26 MQDSKKRYLPT*YGVVLSKEDCLKAPQEEKT*DAFPMPLQVYNIVY 163
MQDSKK +LP +G+ L+K CL+ E+ P + +I+Y
Sbjct: 923 MQDSKKGFLPMSHGINLNKNQCLQTTNEQNKMSVIPYASAIGSIMY 968
>emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group]
Length = 873
Score = 48.1 bits (113), Expect(2) = 4e-07
Identities = 20/38 (52%), Positives = 29/38 (76%)
Frame = +3
Query: 147 YTILCTRLDI*YTIGITSQFQSNPEMFH*IIVKNLLKY 260
Y +LCTRLD+ Y + +T+++QS+P H I VKN+LKY
Sbjct: 800 YAMLCTRLDVSYALSVTNRYQSDPGESHWIAVKNILKY 837
Score = 31.2 bits (69), Expect(2) = 4e-07
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 26 MQDSKKRYLPT*YGVVLSKEDCLKAPQEEKT*DAFPMPLQVYNIVY 163
MQDSKK +LP YG+ L K + E P + +I+Y
Sbjct: 755 MQDSKKGFLPMSYGINLGKNQYPQTTDERNKMSVIPYASAIGSIMY 800
>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77550379|gb|ABA93176.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 938
Score = 45.4 bits (106), Expect(2) = 6e-07
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +3
Query: 147 YTILCTRLDI*YTIGITSQFQSNPEMFH*IIVKNLLKY 260
Y +LCTR D+ Y + TSQ+QS+P H I +KN+LKY
Sbjct: 822 YAMLCTRPDVSYALSATSQYQSDPGESHWIALKNILKY 859
Score = 33.5 bits (75), Expect(2) = 6e-07
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 26 MQDSKKRYLPT*YGVVLSKEDCLKAPQEEKT*DAFPMPLQVYNIVY 163
MQDSKK +LP +G+ L K C + E P + +I+Y
Sbjct: 777 MQDSKKGFLPMSHGINLGKNQCPQTTNERNKMSVIPYASAIGSIMY 822
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 45.1 bits (105), Expect(2) = 7e-07
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +3
Query: 147 YTILCTRLDI*YTIGITSQFQSNPEMFH*IIVKNLLKY 260
Y +LCTR D+ Y + TS++QS+P H I VKN+LKY
Sbjct: 974 YAMLCTRPDVSYALSATSRYQSDPGESHWIAVKNILKY 1011
Score = 33.5 bits (75), Expect(2) = 7e-07
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 26 MQDSKKRYLPT*YGVVLSKEDCLKAPQEEKT*DAFPMPLQVYNIVY 163
MQDSKK +LP +G+ L K C + E P + +I+Y
Sbjct: 929 MQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASAIGSIMY 974
>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1745
Score = 47.0 bits (110), Expect(2) = 1e-06
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = +3
Query: 147 YTILCTRLDI*YTIGITSQFQSNPEMFH*IIVKNLLKY 260
Y +LCTR+D+ Y + TS++QS+P H I VKN+LKY
Sbjct: 1567 YAMLCTRIDVSYALSATSRYQSDPGESHWIAVKNILKY 1604
Score = 30.8 bits (68), Expect(2) = 1e-06
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 26 MQDSKKRYLPT*YGVVLSKEDCLKAPQEEKT*DAFPMPLQVYNIVY 163
MQDSKK +LP +G+ K C + E P + +I+Y
Sbjct: 1522 MQDSKKGFLPMSHGINHGKNQCPQTTDERNKMSVIPYAWAIGSIMY 1567
>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1248
Score = 43.9 bits (102), Expect(2) = 2e-06
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +3
Query: 147 YTILCTRLDI*YTIGITSQFQSNPEMFH*IIVKNLLKY 260
Y +LCTRLD+ Y + TS++QS+ H I VKN+LKY
Sbjct: 1052 YAMLCTRLDVSYALSATSRYQSDLGESHWIAVKNILKY 1089
Score = 33.5 bits (75), Expect(2) = 2e-06
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 26 MQDSKKRYLPT*YGVVLSKEDCLKAPQEEKT*DAFPMPLQVYNIVY 163
MQDSKK +LP +G+ L K C + E P + +I+Y
Sbjct: 1007 MQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASAIGSIMY 1052
>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1161
Score = 43.9 bits (102), Expect(2) = 2e-06
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +3
Query: 147 YTILCTRLDI*YTIGITSQFQSNPEMFH*IIVKNLLKY 260
Y +LCTRLD+ Y + TS++QS+ H I VKN+LKY
Sbjct: 965 YAMLCTRLDVSYALSATSRYQSDLGESHWIAVKNILKY 1002
Score = 33.5 bits (75), Expect(2) = 2e-06
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 26 MQDSKKRYLPT*YGVVLSKEDCLKAPQEEKT*DAFPMPLQVYNIVY 163
MQDSKK +LP +G+ L K C + E P + +I+Y
Sbjct: 920 MQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASAIGSIMY 965
>gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1050
Score = 43.1 bits (100), Expect(2) = 3e-06
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = +3
Query: 147 YTILCTRLDI*YTIGITSQFQSNPEMFH*IIVKNLLKY 260
Y +LCT D+ Y + TS++QS+P H I VKN+LKY
Sbjct: 837 YAMLCTHPDVSYALSATSRYQSDPGESHWIAVKNILKY 874
Score = 33.5 bits (75), Expect(2) = 3e-06
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 26 MQDSKKRYLPT*YGVVLSKEDCLKAPQEEKT*DAFPMPLQVYNIVY 163
MQDSKK +LP +G+ L K C + E P + +I+Y
Sbjct: 792 MQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASAIGSIMY 837
>gb|AAX96622.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77550175|gb|ABA92972.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 305
Score = 45.1 bits (105), Expect(2) = 4e-06
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +3
Query: 147 YTILCTRLDI*YTIGITSQFQSNPEMFH*IIVKNLLKY 260
Y +LCTR D+ Y + TS++QS+P H I VKN+LKY
Sbjct: 86 YAMLCTRPDVSYALSATSRYQSDPGETHWIAVKNILKY 123
Score = 31.2 bits (69), Expect(2) = 4e-06
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 26 MQDSKKRYLPT*YGVVLSKEDCLKAPQEEKT*DAFPMPLQVYNIVY 163
MQDSKK +LP + + L K C + E P + +I+Y
Sbjct: 41 MQDSKKGFLPMSHDINLGKNQCSQTTDERNKMSVIPYASAIGSIMY 86