BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00029606
         (1047 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624...   221   4e-55
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc...   197   7e-48
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   196   2e-47
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...   194   4e-47
emb|CAN75728.1| hypothetical protein VITISV_031408 [Vitis vinifera]   194   5e-47
emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]   194   5e-47
emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]   194   6e-47
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   191   3e-46
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   191   3e-46
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   191   4e-46
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol...   191   5e-46
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...   191   5e-46
emb|CAN74951.1| hypothetical protein VITISV_030567 [Vitis vinifera]   190   7e-46
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...   189   2e-45
ref|XP_006580845.1| PREDICTED: uncharacterized protein LOC102660...   189   2e-45
emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]   189   2e-45
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   189   2e-45
gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subc...   187   5e-45
emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]   187   5e-45
emb|CAN68623.1| hypothetical protein VITISV_010681 [Vitis vinifera]   187   6e-45

>ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624640 [Citrus sinensis]
          Length = 1682

 Score =  221 bits (563), Expect = 4e-55
 Identities = 95/150 (63%), Positives = 120/150 (80%)
 Frame = +2

Query: 5   APILANLGIKFRHPCPHSHQQNGRAERKHLHIVEIGLSFLAQAQLPLKYWWHAFSSAVFV 184
           A  L   GI+FRHPCPH H QNGR ERKH HIV+IGL+ LAQA LPLK+WW+AF +AVF+
Sbjct: 58  ASYLTQFGIQFRHPCPHIHHQNGRIERKHRHIVDIGLTLLAQANLPLKFWWNAFHTAVFL 117

Query: 185 INFLPTPVLHHFSPYQILLKQPPDYHFLKVFGCTCYPFLRPYNSHKFQYRSSKCVFLGYS 364
           IN LPTP L++ SPYQ L +Q PDY  L+VFGC C+P+LRPYN HK  +RS++CVF+GYS
Sbjct: 118 INRLPTPTLNNISPYQKLFQQVPDYVSLRVFGCACFPYLRPYNRHKLSFRSNRCVFIGYS 177

Query: 365 DSHKGYKCLDSTGRIYIASTVEFNENEFPF 454
            SHKGY+CL S+GR+Y+++ V F+E  FP+
Sbjct: 178 SSHKGYQCLHSSGRVYVSNHVIFDEQSFPY 207



 Score =  122 bits (307), Expect = 2e-25
 Identities = 60/108 (55%), Positives = 79/108 (73%)
 Frame = +2

Query: 722  HPMVTRSKSGIFKPKTYSVTSLPPLILEPVSVAQALSIPQWKEAMQIEFDALIAKETWTL 901
            HPM+TRSK+GIFKPK++ + +L  +  EP SV+ ALS P+W +AMQ EF AL    TW L
Sbjct: 297  HPMITRSKAGIFKPKSF-LAALLAIPSEPTSVSAALSDPKWFKAMQEEFQALQNNHTWDL 355

Query: 902  VPFNSDMSVIDNKWVFRVKQKSDGSVDRYKARLVAKGFQQTAGVDYFE 1045
            V  +  + V+ NKW+F++K  +DG++ RYKARLVAKGF QT GVDY E
Sbjct: 356  VLPSEPIKVVGNKWIFKIKYHADGTISRYKARLVAKGFHQTQGVDYTE 403


>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1478

 Score =  197 bits (500), Expect = 7e-48
 Identities = 90/155 (58%), Positives = 116/155 (74%), Gaps = 1/155 (0%)
 Frame = +2

Query: 2    LAPILANLGIKFRHPCPHSHQQNGRAERKHLHIVEIGLSFLAQAQLPLKYWWHAFSSAVF 181
            L    + +GI     CPH+HQQNG AERKH HIVEIGLS L+ A +PLK+W  AF +A +
Sbjct: 618  LNSFFSKIGIVHHVSCPHTHQQNGSAERKHRHIVEIGLSLLSHASMPLKFWDEAFQAATY 677

Query: 182  VINFLPTPVLHHFSPYQILLKQPPDYHFLKVFGCTCYPFLRPYNSHKFQYRSSKCVFLGY 361
            +IN +P+ V+H+ SP + L KQ PDY  L++FGC C+P LRPYN+HK Q+RS +CVFLG+
Sbjct: 678  LINRVPSRVIHNISPLEKLFKQKPDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCVFLGF 737

Query: 362  SDSHKGYKCLD-STGRIYIASTVEFNENEFPFSEL 463
            S  HKG+KCL+ STGRIYI+  V F+EN FPF+EL
Sbjct: 738  STMHKGFKCLEVSTGRIYISRDVVFDENIFPFTEL 772



 Score = 91.7 bits (226), Expect = 4e-16
 Identities = 41/79 (51%), Positives = 57/79 (72%)
 Frame = +2

Query: 803  EPVSVAQALSIPQWKEAMQIEFDALIAKETWTLVPFNSDMSVIDNKWVFRVKQKSDGSVD 982
            EP +  +AL    WK AM  E+DAL+  +TW LVP     ++I  KWV+++K+K+DG++D
Sbjct: 937  EPTNDLEALKDKNWKLAMDSEYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKRKADGTLD 996

Query: 983  RYKARLVAKGFQQTAGVDY 1039
            RYKARLVAKGF+Q  G+DY
Sbjct: 997  RYKARLVAKGFKQRYGIDY 1015


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score =  196 bits (497), Expect = 2e-47
 Identities = 90/155 (58%), Positives = 115/155 (74%), Gaps = 1/155 (0%)
 Frame = +2

Query: 2    LAPILANLGIKFRHPCPHSHQQNGRAERKHLHIVEIGLSFLAQAQLPLKYWWHAFSSAVF 181
            L    + +GI     CPH+HQQNG AERKH HIVEIGLS L+ A +PLK+W  AF  A +
Sbjct: 585  LNSFFSKIGIVHHVSCPHTHQQNGSAERKHRHIVEIGLSLLSHASMPLKFWDEAFQVATY 644

Query: 182  VINFLPTPVLHHFSPYQILLKQPPDYHFLKVFGCTCYPFLRPYNSHKFQYRSSKCVFLGY 361
            +IN +P+ V+H+ SP + L KQ PDY  L++FGC C+P LRPYN+HK Q+RS +CVFLG+
Sbjct: 645  LINRVPSRVIHNISPLEKLFKQKPDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCVFLGF 704

Query: 362  SDSHKGYKCLD-STGRIYIASTVEFNENEFPFSEL 463
            S  HKG+KCL+ STGRIYI+  V F+EN FPF+EL
Sbjct: 705  STMHKGFKCLEVSTGRIYISRDVVFDENIFPFTEL 739



 Score = 94.7 bits (234), Expect = 5e-17
 Identities = 48/108 (44%), Positives = 69/108 (63%), Gaps = 6/108 (5%)
 Frame = +2

Query: 734  TRSKSGIFKPKTYSVTSLP------PLILEPVSVAQALSIPQWKEAMQIEFDALIAKETW 895
            TR +SG+ K K Y+  ++           EP +  +AL    WK AM  E+DAL+  +TW
Sbjct: 915  TRLQSGVRKEKVYTDGTIKYKHSWFTASGEPTNDLEALKDKNWKLAMDSEYDALVKNKTW 974

Query: 896  TLVPFNSDMSVIDNKWVFRVKQKSDGSVDRYKARLVAKGFQQTAGVDY 1039
             LVP     ++I  KWV+++K+K+DG++DRYKARLVAKGF+Q  G+DY
Sbjct: 975  HLVPPQRGRNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGIDY 1022


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1256

 Score =  194 bits (494), Expect = 4e-47
 Identities = 90/148 (60%), Positives = 110/148 (74%), Gaps = 1/148 (0%)
 Frame = +2

Query: 23  LGIKFRHPCPHSHQQNGRAERKHLHIVEIGLSFLAQAQLPLKYWWHAFSSAVFVINFLPT 202
           +GI     CPH+HQQNG AERKH HIVE+GLS LA A LPLK+W  A+ S V++IN +PT
Sbjct: 427 IGITHHVSCPHTHQQNGSAERKHRHIVEVGLSLLAHASLPLKFWDEAYQSGVYLINRMPT 486

Query: 203 PVLHHFSPYQILLKQPPDYHFLKVFGCTCYPFLRPYNSHKFQYRSSKCVFLGYSDSHKGY 382
            VL + SP + L KQ PDY  L+ FGC C+P LRPYNSHK  +RS +C FLGYS  HKG+
Sbjct: 487 KVLGYSSPLECLFKQTPDYQALRTFGCACWPDLRPYNSHKMHFRSKRCTFLGYSPLHKGF 546

Query: 383 KCLD-STGRIYIASTVEFNENEFPFSEL 463
           +CLD STGRIYI+  V F+E+ FPF+EL
Sbjct: 547 RCLDSSTGRIYISRDVVFDESVFPFAEL 574



 Score = 95.5 bits (236), Expect = 3e-17
 Identities = 50/107 (46%), Positives = 67/107 (62%), Gaps = 4/107 (3%)
 Frame = +2

Query: 731  VTRSKSGIFKPKTYSVTSLPPLIL----EPVSVAQALSIPQWKEAMQIEFDALIAKETWT 898
            VT  + GI K K Y+  ++    L    EP  +  AL    WK AM  +F AL+  +TW 
Sbjct: 719  VTHLQKGIRKEKIYTDRTVKYGCLTTTGEPRDLHDALHDTNWKHAMDAKFTALLHNKTWH 778

Query: 899  LVPFNSDMSVIDNKWVFRVKQKSDGSVDRYKARLVAKGFQQTAGVDY 1039
            LVP     ++ID KWV+++K+K DGS+DRYKARLVAKGF+Q  G+DY
Sbjct: 779  LVPPQKGRNIIDYKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDY 825


>emb|CAN75728.1| hypothetical protein VITISV_031408 [Vitis vinifera]
          Length = 1099

 Score =  194 bits (493), Expect = 5e-47
 Identities = 87/155 (56%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
 Frame = +2

Query: 2   LAPILANLGIKFRHPCPHSHQQNGRAERKHLHIVEIGLSFLAQAQLPLKYWWHAFSSAVF 181
           L PI    GI FRHPC ++HQQ  R E+KH HI+++ L+ LAQ  +PL +WW A  S+VF
Sbjct: 381 LLPIFEKSGILFRHPCLYTHQQQRRVEQKHHHIIDLSLTLLAQDAMPLTFWWDACVSSVF 440

Query: 182 VINFLPTPVLHHF-SPYQILLKQPPDYHFLKVFGCTCYPFLRPYNSHKFQYRSSKCVFLG 358
           +IN L T VL +F SP++ L     DY F KVFGC+CY +LRPYNSHKF +RS+KC+FLG
Sbjct: 441 IINQLLTKVLANFQSPFKTLFGSKLDYSFFKVFGCSCYSYLRPYNSHKFSFRSTKCLFLG 500

Query: 359 YSDSHKGYKCLDSTGRIYIASTVEFNENEFPFSEL 463
           YS  HKGY+CL  +G+IY+A ++ FNEN+FP+S L
Sbjct: 501 YSPXHKGYRCLSXSGQIYVAKSITFNENDFPYSTL 535


>emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]
          Length = 1365

 Score =  194 bits (493), Expect = 5e-47
 Identities = 89/150 (59%), Positives = 112/150 (74%), Gaps = 1/150 (0%)
 Frame = +2

Query: 14   LANLGIKFRHPCPHSHQQNGRAERKHLHIVEIGLSFLAQAQLPLKYWWHAFSSAVFVINF 193
            L   GI  R  CP++  QNGR ERKH H+VE GL+ LA A LPLK+W +AF +A F+IN 
Sbjct: 572  LQESGILHRFSCPYNSSQNGRVERKHRHVVETGLALLAHAGLPLKFWSYAFQTATFLINR 631

Query: 194  LPTPVLHHFSPYQILLKQPPDYHFLKVFGCTCYPFLRPYNSHKFQYRSSKCVFLGYSDSH 373
            +P+ VL + SPY  L K+ PDY FL+VFGC CYPF+RPYN+HK QYRS KCVFLGYS  H
Sbjct: 632  MPSKVLQNASPYFALFKRNPDYKFLRVFGCLCYPFIRPYNNHKLQYRSLKCVFLGYSLHH 691

Query: 374  KGYKCLDS-TGRIYIASTVEFNENEFPFSE 460
            KGY CLD+ TGR+Y++  V F+E +FPF++
Sbjct: 692  KGYLCLDNLTGRVYVSPHVVFDETQFPFAQ 721



 Score =  103 bits (258), Expect = 9e-20
 Identities = 55/107 (51%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
 Frame = +2

Query: 728  MVTRSKSGIFKPK-TYSVTSLPPLILEPVSVAQALSIPQWKEAMQIEFDALIAKETWTLV 904
            + TRS SGI K K  +++ +    I EP ++ QA+  P W EAMQ E  AL   +TW LV
Sbjct: 806  VTTRSMSGITKRKHIFNLAAFK--ISEPTTLKQAIKDPNWAEAMQTEIAALHKNQTWDLV 863

Query: 905  PFNSDMSVIDNKWVFRVKQKSDGSVDRYKARLVAKGFQQTAGVDYFE 1045
                D+++I  KWV+++K K DGSVDRYKARLVA+GF QT G+DYFE
Sbjct: 864  DPPKDVNIIGCKWVYKLKYKPDGSVDRYKARLVARGFNQTFGLDYFE 910


>emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
          Length = 1402

 Score =  194 bits (492), Expect = 6e-47
 Identities = 89/150 (59%), Positives = 112/150 (74%), Gaps = 1/150 (0%)
 Frame = +2

Query: 14   LANLGIKFRHPCPHSHQQNGRAERKHLHIVEIGLSFLAQAQLPLKYWWHAFSSAVFVINF 193
            L   GI  R  CP++  QNGR ERKH H+VE GL+ LA A LPLK+W +AF +A F+IN 
Sbjct: 622  LQESGILHRFSCPYNSSQNGRVERKHRHVVETGLALLAHAGLPLKFWSYAFQTATFLINR 681

Query: 194  LPTPVLHHFSPYQILLKQPPDYHFLKVFGCTCYPFLRPYNSHKFQYRSSKCVFLGYSDSH 373
            +P+ VL + SPY  L K+ PDY FL+VFGC CYPF+RPYN+HK QYRS KCVFLGYS  H
Sbjct: 682  MPSKVLXNASPYFALFKRNPDYKFLRVFGCLCYPFIRPYNNHKLQYRSLKCVFLGYSLHH 741

Query: 374  KGYKCLDS-TGRIYIASTVEFNENEFPFSE 460
            KGY CLD+ TGR+Y++  V F+E +FPF++
Sbjct: 742  KGYLCLDNLTGRVYVSPHVVFDETQFPFAQ 771



 Score =  101 bits (252), Expect = 4e-19
 Identities = 54/106 (50%), Positives = 68/106 (64%)
 Frame = +2

Query: 728  MVTRSKSGIFKPKTYSVTSLPPLILEPVSVAQALSIPQWKEAMQIEFDALIAKETWTLVP 907
            + TRS SGI K K     +    I EP ++ QA+  P W EAM  E  AL   +TW LV 
Sbjct: 856  VTTRSMSGITKRKPIFNLAASK-ISEPTTLKQAIKDPNWAEAMHTEIAALHKNQTWDLVD 914

Query: 908  FNSDMSVIDNKWVFRVKQKSDGSVDRYKARLVAKGFQQTAGVDYFE 1045
               D+++I  KWV+++K K DGSVDRYKARLVA+GF QT G+DYFE
Sbjct: 915  PPKDVNIIGCKWVYKLKYKXDGSVDRYKARLVARGFNQTFGLDYFE 960


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  191 bits (486), Expect = 3e-46
 Identities = 87/148 (58%), Positives = 112/148 (75%), Gaps = 1/148 (0%)
 Frame = +2

Query: 23   LGIKFRHPCPHSHQQNGRAERKHLHIVEIGLSFLAQAQLPLKYWWHAFSSAVFVINFLPT 202
            +GI  +  CPH+HQQNG AERKH HIVE+GL+ LAQ+ +PLKYW HAF +AV++IN  P+
Sbjct: 598  IGIHHQVSCPHTHQQNGAAERKHRHIVEVGLALLAQSSMPLKYWDHAFLAAVYLINRTPS 657

Query: 203  PVLHHFSPYQILLKQPPDYHFLKVFGCTCYPFLRPYNSHKFQYRSSKCVFLGYSDSHKGY 382
              + H +P   L    PDY  L++FGC C+P LRPYN HK Q+RS++CVFLGYS+ HKG+
Sbjct: 658  KTIAHDTPLHKLTGATPDYSSLRIFGCACWPNLRPYNQHKLQFRSTRCVFLGYSNMHKGF 717

Query: 383  KCLD-STGRIYIASTVEFNENEFPFSEL 463
            KCLD STGRIYI+  V F+E+ FPF+ L
Sbjct: 718  KCLDISTGRIYISRDVVFDEHVFPFASL 745



 Score =  106 bits (265), Expect = 1e-20
 Identities = 55/107 (51%), Positives = 73/107 (68%), Gaps = 5/107 (4%)
 Frame = +2

Query: 734  TRSKSGIFKPKTYSVTSL-----PPLILEPVSVAQALSIPQWKEAMQIEFDALIAKETWT 898
            TR + GI KPK ++  ++        I EP SV++AL+ PQW+ AM+ EF AL    TWT
Sbjct: 896  TRLQHGISKPKQFTDGTVRYGNAAARITEPSSVSEALADPQWRAAMEAEFQALQKNNTWT 955

Query: 899  LVPFNSDMSVIDNKWVFRVKQKSDGSVDRYKARLVAKGFQQTAGVDY 1039
            LVP +   ++ID KWVF+VK  +DGS+DR KARLVAKGF+Q  G+DY
Sbjct: 956  LVPPDRTRNLIDCKWVFKVKYNADGSIDRLKARLVAKGFKQQYGIDY 1002


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score =  191 bits (486), Expect = 3e-46
 Identities = 88/148 (59%), Positives = 111/148 (75%), Gaps = 1/148 (0%)
 Frame = +2

Query: 23   LGIKFRHPCPHSHQQNGRAERKHLHIVEIGLSFLAQAQLPLKYWWHAFSSAVFVINFLPT 202
            +GI     CPH+HQQNG AERKH HIVE+GL+ LA + +PLK+W  AF SAV++IN  P+
Sbjct: 596  VGITHHVSCPHTHQQNGSAERKHRHIVEVGLALLAYSSMPLKFWGEAFLSAVYLINRTPS 655

Query: 203  PVLHHFSPYQILLKQPPDYHFLKVFGCTCYPFLRPYNSHKFQYRSSKCVFLGYSDSHKGY 382
             VLH  SP + LL   PDY+ L+VFGC C+P LRPYN HK Q+RS+ C FLGYS  HKG+
Sbjct: 656  RVLHDVSPLERLLGHKPDYNALRVFGCACWPNLRPYNKHKLQFRSTTCTFLGYSTLHKGF 715

Query: 383  KCLD-STGRIYIASTVEFNENEFPFSEL 463
            KCLD STGR+YI+  V F+E +FPF++L
Sbjct: 716  KCLDPSTGRVYISRDVVFDETQFPFTKL 743



 Score = 97.8 bits (242), Expect = 6e-18
 Identities = 53/106 (50%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
 Frame = +2

Query: 734  TRSKSGIFKPKTYSVTSLPPLIL----EPVSVAQALSIPQWKEAMQIEFDALIAKETWTL 901
            TR +SGI K K Y+  ++   +L    EP ++  AL    WK AM  E+ ALI   TW L
Sbjct: 895  TRLQSGIRKEKVYTDGTVKWGMLTSTGEPENLQDALQNNNWKCAMDAEYMALIKNNTWHL 954

Query: 902  VPFNSDMSVIDNKWVFRVKQKSDGSVDRYKARLVAKGFQQTAGVDY 1039
            VP     +VID KWV+++K+K DGS+DRYKARLVAKGF+Q  G+DY
Sbjct: 955  VPPQQGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDY 1000


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  191 bits (485), Expect = 4e-46
 Identities = 88/149 (59%), Positives = 107/149 (71%)
 Frame = +2

Query: 14   LANLGIKFRHPCPHSHQQNGRAERKHLHIVEIGLSFLAQAQLPLKYWWHAFSSAVFVINF 193
            LA  GI  R  CPH+ QQNG AERKH  IVE GL+ L  A LPLK+W  +F + V++ N 
Sbjct: 661  LAENGIVHRVSCPHTQQQNGVAERKHRTIVEHGLTLLHTASLPLKFWDESFRTVVYLSNR 720

Query: 194  LPTPVLHHFSPYQILLKQPPDYHFLKVFGCTCYPFLRPYNSHKFQYRSSKCVFLGYSDSH 373
            LPT +LHH  P ++L K  PDY FLKVFGC+C+P LRPYN+HK QYRS +C FLGYS  H
Sbjct: 721  LPTAILHHKCPIEVLFKSIPDYSFLKVFGCSCFPNLRPYNTHKLQYRSEECTFLGYSLKH 780

Query: 374  KGYKCLDSTGRIYIASTVEFNENEFPFSE 460
            KGYKC+ S GR+YI+  V FNE  FP+S+
Sbjct: 781  KGYKCMSSNGRVYISHDVIFNETSFPYSK 809



 Score =  110 bits (274), Expect = 1e-21
 Identities = 55/108 (50%), Positives = 70/108 (64%)
 Frame = +2

Query: 722  HPMVTRSKSGIFKPKTYSVTSLPPLILEPVSVAQALSIPQWKEAMQIEFDALIAKETWTL 901
            HPM+TR+KSGI KPK +        I EP SV+ AL   +WK+AM  E+DAL    TW+L
Sbjct: 914  HPMITRAKSGIVKPKIFIAA-----IREPSSVSAALQQDEWKKAMVAEYDALQRNNTWSL 968

Query: 902  VPFNSDMSVIDNKWVFRVKQKSDGSVDRYKARLVAKGFQQTAGVDYFE 1045
            VP  +    I  KWV++ K+  DG+V +YKARLVAKGF Q AG D+ E
Sbjct: 969  VPLPAGRQAIGCKWVYKTKENPDGTVQKYKARLVAKGFHQQAGFDFTE 1016


>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein [Zea
           mays]
          Length = 969

 Score =  191 bits (484), Expect = 5e-46
 Identities = 86/148 (58%), Positives = 111/148 (75%), Gaps = 1/148 (0%)
 Frame = +2

Query: 23  LGIKFRHPCPHSHQQNGRAERKHLHIVEIGLSFLAQAQLPLKYWWHAFSSAVFVINFLPT 202
           +GI     CPH+HQQNG AERKH HIVE+GLS LA A +PLK+W  AF +A ++IN  PT
Sbjct: 445 IGISHLVSCPHAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFLAAAYLINRTPT 504

Query: 203 PVLHHFSPYQILLKQPPDYHFLKVFGCTCYPFLRPYNSHKFQYRSSKCVFLGYSDSHKGY 382
            +L+  +P++ L  + PDY  L++FGC C+P LRPYNSHK Q+RS +CVFLGYS  HKG+
Sbjct: 505 KILNLDTPFERLFHKQPDYSVLRIFGCVCWPNLRPYNSHKLQFRSKQCVFLGYSSLHKGF 564

Query: 383 KCLD-STGRIYIASTVEFNENEFPFSEL 463
           KCLD STGR+Y++  V F+EN FPF+ L
Sbjct: 565 KCLDVSTGRVYVSRDVTFDENFFPFASL 592



 Score = 98.6 bits (244), Expect = 4e-18
 Identities = 49/106 (46%), Positives = 70/106 (66%), Gaps = 4/106 (3%)
 Frame = +2

Query: 734  TRSKSGIFKPKTYSVTSLPPLIL----EPVSVAQALSIPQWKEAMQIEFDALIAKETWTL 901
            TR + G+ KPK Y+  ++         EP  + +AL    WK+AM IE+ AL+  +TW L
Sbjct: 777  TRLQQGVRKPKVYTDGTIRYGCFTSSGEPYDLNEALGDVNWKDAMDIEYSALMKNKTWHL 836

Query: 902  VPFNSDMSVIDNKWVFRVKQKSDGSVDRYKARLVAKGFQQTAGVDY 1039
            VP     +VI  KWV+++K+K+DGS+DRYKARLVAKG++Q  G+DY
Sbjct: 837  VPPKKGRNVIGCKWVYKIKRKADGSLDRYKARLVAKGYKQQYGIDY 882


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea
           mays]
          Length = 1313

 Score =  191 bits (484), Expect = 5e-46
 Identities = 86/148 (58%), Positives = 111/148 (75%), Gaps = 1/148 (0%)
 Frame = +2

Query: 23  LGIKFRHPCPHSHQQNGRAERKHLHIVEIGLSFLAQAQLPLKYWWHAFSSAVFVINFLPT 202
           +GI     CPH+HQQNG AERKH HIVE+GLS LA A +PLK+W  AF +A ++IN  PT
Sbjct: 445 IGISHLVSCPHAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFLAAAYLINRTPT 504

Query: 203 PVLHHFSPYQILLKQPPDYHFLKVFGCTCYPFLRPYNSHKFQYRSSKCVFLGYSDSHKGY 382
            +L+  +P++ L  + PDY  L++FGC C+P LRPYNSHK Q+RS +CVFLGYS  HKG+
Sbjct: 505 KILNLDTPFERLFHKQPDYSVLRIFGCVCWPNLRPYNSHKLQFRSKQCVFLGYSSLHKGF 564

Query: 383 KCLD-STGRIYIASTVEFNENEFPFSEL 463
           KCLD STGR+Y++  V F+EN FPF+ L
Sbjct: 565 KCLDVSTGRVYVSRDVTFDENFFPFASL 592



 Score = 98.6 bits (244), Expect = 4e-18
 Identities = 49/106 (46%), Positives = 70/106 (66%), Gaps = 4/106 (3%)
 Frame = +2

Query: 734  TRSKSGIFKPKTYSVTSLPPLIL----EPVSVAQALSIPQWKEAMQIEFDALIAKETWTL 901
            TR + G+ KPK Y+  ++         EP  + +AL    WK+AM IE+ AL+  +TW L
Sbjct: 777  TRLQQGVRKPKVYTDGTIRYGCFTSSGEPYDLNEALGDVNWKDAMDIEYSALMKNKTWHL 836

Query: 902  VPFNSDMSVIDNKWVFRVKQKSDGSVDRYKARLVAKGFQQTAGVDY 1039
            VP     +VI  KWV+++K+K+DGS+DRYKARLVAKG++Q  G+DY
Sbjct: 837  VPPKKGRNVIGCKWVYKIKRKADGSLDRYKARLVAKGYKQQYGIDY 882


>emb|CAN74951.1| hypothetical protein VITISV_030567 [Vitis vinifera]
          Length = 2203

 Score =  190 bits (483), Expect = 7e-46
 Identities = 80/130 (61%), Positives = 102/130 (78%)
 Frame = +2

Query: 2   LAPILANLGIKFRHPCPHSHQQNGRAERKHLHIVEIGLSFLAQAQLPLKYWWHAFSSAVF 181
           L  +L   GI FRHPCPH HQQNG+ ERKH  IVEIGL+ LA++QLP  +WWHAFS+A +
Sbjct: 579 LQSLLQKKGILFRHPCPHVHQQNGKVERKHRSIVEIGLTLLAKSQLPFTFWWHAFSTATY 638

Query: 182 VINFLPTPVLHHFSPYQILLKQPPDYHFLKVFGCTCYPFLRPYNSHKFQYRSSKCVFLGY 361
           ++N LPTPVLH  +PY++L K  PD+ FLK FGC CYP+LRPY +HK +Y+S++C F+GY
Sbjct: 639 LLNRLPTPVLHCKTPYELLFKSSPDFLFLKTFGCACYPYLRPYKNHKLEYQSTQCTFIGY 698

Query: 362 SDSHKGYKCL 391
           S SHKGY C+
Sbjct: 699 SLSHKGYLCV 708



 Score = 75.9 bits (185), Expect = 3e-11
 Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
 Frame = +2

Query: 26   GIKFRHPCPHSHQQNGRAERKHLHIVEIGLSFLAQAQLPLKYWWHAFSSAVFVIN-FLPT 202
            GI      P + QQNG  ERK+  + E+  + L +  LP  +W  A +++ +V+N  L  
Sbjct: 1182 GINHNFSAPRTPQQNGVVERKNRTLQEMARTMLNENNLPKYFWAEAVNTSCYVLNRILLR 1241

Query: 203  PVLHHFSPYQILLKQPPDYHFLKVFGCTCYPFLRPYNSHKFQYRSSKCVFLGYSDSHKGY 382
            P+L   +PY++   + P+  + KVFGC C+      N  KF  +S   +FLGYS S K +
Sbjct: 1242 PILKK-TPYELWKNKKPNISYFKVFGCKCFILNTKDNLGKFDAKSDVGIFLGYSTSSKAF 1300

Query: 383  K 385
            +
Sbjct: 1301 R 1301


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
           gi|108706314|gb|ABF94109.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1247

 Score =  189 bits (480), Expect = 2e-45
 Identities = 87/155 (56%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
 Frame = +2

Query: 2   LAPILANLGIKFRHPCPHSHQQNGRAERKHLHIVEIGLSFLAQAQLPLKYWWHAFSSAVF 181
           L      +GI     CPH+HQQNG AERKH HIVE+GL+ LA + +PLK+W  AF+SAV+
Sbjct: 389 LNSFFTKIGITHHVSCPHTHQQNGSAERKHRHIVEMGLALLAYSSMPLKFWDEAFTSAVY 448

Query: 182 VINFLPTPVLHHFSPYQILLKQPPDYHFLKVFGCTCYPFLRPYNSHKFQYRSSKCVFLGY 361
           +IN  P+ +L + +P + L KQ PDY+ L+VFGC C+P LRPYN+ K Q+RS +C FLGY
Sbjct: 449 LINRTPSRLLKYATPLERLFKQTPDYNLLRVFGCACWPHLRPYNARKLQFRSKQCTFLGY 508

Query: 362 SDSHKGYKCLD-STGRIYIASTVEFNENEFPFSEL 463
           S  HKG+KCLD STGR+YI+  V F+EN FPF+ L
Sbjct: 509 SPLHKGFKCLDPSTGRVYISHDVIFDENVFPFASL 543



 Score = 97.8 bits (242), Expect = 6e-18
 Identities = 53/108 (49%), Positives = 69/108 (63%), Gaps = 6/108 (5%)
 Frame = +2

Query: 734  TRSKSGIFKPKTYSV------TSLPPLILEPVSVAQALSIPQWKEAMQIEFDALIAKETW 895
            TR +SGI K K Y+       T+   +  EP ++  AL    WK+AM  EF AL   +TW
Sbjct: 709  TRLQSGIRKEKVYTDGTVKYRTTFLTVTGEPENLDDALKDNNWKKAMDAEFMALQNNKTW 768

Query: 896  TLVPFNSDMSVIDNKWVFRVKQKSDGSVDRYKARLVAKGFQQTAGVDY 1039
             LVP     +VID KWV+++K+K DGS+DRYKARLVAKGF+Q  G+DY
Sbjct: 769  HLVPPQKGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDY 816


>ref|XP_006580845.1| PREDICTED: uncharacterized protein LOC102660325 [Glycine max]
          Length = 868

 Score =  189 bits (479), Expect = 2e-45
 Identities = 87/151 (57%), Positives = 111/151 (73%)
 Frame = +2

Query: 14   LANLGIKFRHPCPHSHQQNGRAERKHLHIVEIGLSFLAQAQLPLKYWWHAFSSAVFVINF 193
            L +LGI  R  CPH+H QNG  ERKH + VE GL+ LAQ+ LPLK+W H+F +A ++IN 
Sbjct: 706  LNDLGIVHRFTCPHTHHQNGIVERKHRYTVETGLALLAQSTLPLKFWDHSFVTAAYLINR 765

Query: 194  LPTPVLHHFSPYQILLKQPPDYHFLKVFGCTCYPFLRPYNSHKFQYRSSKCVFLGYSDSH 373
            LP+  L++ S Y  LL + PDY  L+VFGC+C+PFLRPYNSHK  YRS +C+FLGYS +H
Sbjct: 766  LPSVSLNNQSLYFKLLNKQPDYSCLRVFGCSCFPFLRPYNSHKLDYRSQECIFLGYSTAH 825

Query: 374  KGYKCLDSTGRIYIASTVEFNENEFPFSELF 466
            KGYKCL   G IYI+  V F E++FP+S LF
Sbjct: 826  KGYKCLAPNGHIYISKDVLFQESKFPYSTLF 856


>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
          Length = 1262

 Score =  189 bits (479), Expect = 2e-45
 Identities = 87/145 (60%), Positives = 105/145 (72%)
 Frame = +2

Query: 26  GIKFRHPCPHSHQQNGRAERKHLHIVEIGLSFLAQAQLPLKYWWHAFSSAVFVINFLPTP 205
           GI  R  CPH+ +QNG  ERKH HIVE+GL+ LAQA LPLKYW  AFS+AVF+IN LPT 
Sbjct: 460 GIIHRLSCPHTSKQNGIIERKHRHIVELGLTLLAQASLPLKYWPDAFSTAVFLINRLPTE 519

Query: 206 VLHHFSPYQILLKQPPDYHFLKVFGCTCYPFLRPYNSHKFQYRSSKCVFLGYSDSHKGYK 385
           VL    PY+ L    P+Y  LKVFGC C+P LRPYN HK  +RSS C FLGYS  HKGYK
Sbjct: 520 VLKQKCPYEFLFNSKPNYSQLKVFGCLCFPHLRPYNKHKLDFRSSPCTFLGYSSKHKGYK 579

Query: 386 CLDSTGRIYIASTVEFNENEFPFSE 460
           CL+  GR++I+ +V F+E  FPF++
Sbjct: 580 CLNQQGRMFISRSVVFDETRFPFAD 604



 Score =  110 bits (274), Expect = 1e-21
 Identities = 54/108 (50%), Positives = 75/108 (69%)
 Frame = +2

Query: 722  HPMVTRSKSGIFKPKTYSVTSLPPLILEPVSVAQALSIPQWKEAMQIEFDALIAKETWTL 901
            H MVTRSK+GIFKP  Y+V      + EP +  +A+S P+WKEAM  EF AL+  +TW+L
Sbjct: 722  HHMVTRSKNGIFKPXVYTVDLN---VEEPNTFQEAISHPKWKEAMDEEFRALMKNKTWSL 778

Query: 902  VPFNSDMSVIDNKWVFRVKQKSDGSVDRYKARLVAKGFQQTAGVDYFE 1045
            V   ++ + +  +WVF++K+  DGSV RYKARLVAKG+ Q  G D++E
Sbjct: 779  VSLPTNRTSVGCRWVFKLKRNPDGSVSRYKARLVAKGYSQVPGFDFYE 826


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score =  189 bits (479), Expect = 2e-45
 Identities = 86/155 (55%), Positives = 110/155 (70%), Gaps = 1/155 (0%)
 Frame = +2

Query: 2    LAPILANLGIKFRHPCPHSHQQNGRAERKHLHIVEIGLSFLAQAQLPLKYWWHAFSSAVF 181
            L      +GI     CPH+HQQNG AERKH HIVE+GL+ LA + +PLK+W  AF +AV+
Sbjct: 591  LHSFFTKIGITHHVSCPHTHQQNGSAERKHRHIVEVGLTLLAYSSMPLKFWDEAFQAAVY 650

Query: 182  VINFLPTPVLHHFSPYQILLKQPPDYHFLKVFGCTCYPFLRPYNSHKFQYRSSKCVFLGY 361
            +IN  PT +L   +P + L  Q PDY  L+VFGC C+P LRPYN+HK Q+RS +C FLGY
Sbjct: 651  LINRTPTKLLQFLTPLEHLFNQTPDYSSLRVFGCACWPHLRPYNTHKLQFRSKQCTFLGY 710

Query: 362  SDSHKGYKCLD-STGRIYIASTVEFNENEFPFSEL 463
            S  HKG+KCLD STGR+YI+  V F+E  FPF++L
Sbjct: 711  STLHKGFKCLDPSTGRVYISRDVIFDETNFPFAKL 745



 Score = 99.8 bits (247), Expect = 2e-18
 Identities = 51/108 (47%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
 Frame = +2

Query: 734  TRSKSGIFKPKTYSVTSLP------PLILEPVSVAQALSIPQWKEAMQIEFDALIAKETW 895
            TR + GI K K Y+  ++        +  EP ++  AL    WK+AM IE++AL+  +TW
Sbjct: 909  TRLQRGIRKEKVYTDGTVKYKNTFLTVTGEPKNLTDALQNTNWKKAMDIEYEALMNNKTW 968

Query: 896  TLVPFNSDMSVIDNKWVFRVKQKSDGSVDRYKARLVAKGFQQTAGVDY 1039
             LVP     +VID KWV+++K+K DGS+DRYKARLVAKGF+Q  G+DY
Sbjct: 969  HLVPPKQGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDY 1016


>gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1145

 Score =  187 bits (476), Expect = 5e-45
 Identities = 85/155 (54%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
 Frame = +2

Query: 2   LAPILANLGIKFRHPCPHSHQQNGRAERKHLHIVEIGLSFLAQAQLPLKYWWHAFSSAVF 181
           L    + +GI     CPH+HQQNG AERKH HIVE+GLS L+ A +PLK+W  AF +A +
Sbjct: 461 LNSFFSKIGIVHHVSCPHTHQQNGSAERKHRHIVEVGLSLLSHAHMPLKFWDEAFQAATY 520

Query: 182 VINFLPTPVLHHFSPYQILLKQPPDYHFLKVFGCTCYPFLRPYNSHKFQYRSSKCVFLGY 361
           +IN +P+ V+ + +P +    Q PDY  L+VFGC C+P LRPYN HK Q+RS +C FLG+
Sbjct: 521 LINRVPSRVIQNTTPLEKFFHQKPDYSSLRVFGCACWPNLRPYNKHKLQFRSKRCAFLGF 580

Query: 362 SDSHKGYKCLD-STGRIYIASTVEFNENEFPFSEL 463
           S+ HKG+KCLD S+GR+YI+  V F+EN FPFSEL
Sbjct: 581 SNMHKGFKCLDISSGRVYISRDVVFDENIFPFSEL 615


>emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]
          Length = 1449

 Score =  187 bits (476), Expect = 5e-45
 Identities = 85/148 (57%), Positives = 111/148 (75%), Gaps = 1/148 (0%)
 Frame = +2

Query: 14   LANLGIKFRHPCPHSHQQNGRAERKHLHIVEIGLSFLAQAQLPLKYWWHAFSSAVFVINF 193
            LA  GIK +  CP++ +QNGRAERK  HI+E GL+ LA A LP K+W +AF +A+F+IN 
Sbjct: 658  LATHGIKSQFSCPYTPEQNGRAERKLRHIIETGLALLATASLPFKFWLYAFHTAIFLINR 717

Query: 194  LPTPVLHHFSPYQILLKQPPDYHFLKVFGCTCYPFLRPYNSHKFQYRSSKCVFLGYSDSH 373
            LPT VL++ SP+QIL  + P+YH  K+FGC CYP++RPYN +K  YRSS+CVFLGYS +H
Sbjct: 718  LPTKVLNYQSPFQILFGKSPNYHIFKIFGCLCYPYIRPYNKNKLSYRSSQCVFLGYSSNH 777

Query: 374  KGYKCLDS-TGRIYIASTVEFNENEFPF 454
            KGY CL+  TGR+Y+   V F+E  FPF
Sbjct: 778  KGYMCLNPLTGRLYVTRHVVFHETVFPF 805



 Score =  108 bits (271), Expect = 3e-21
 Identities = 57/108 (52%), Positives = 72/108 (66%)
 Frame = +2

Query: 722  HPMVTRSKSGIFKPKTYSVTSLPPLILEPVSVAQALSIPQWKEAMQIEFDALIAKETWTL 901
            HPMVTR+K+GI K K Y  +     I EP +  QA+    W  AM+ EF AL    TW L
Sbjct: 879  HPMVTRAKNGISKKKVYFSSH----ISEPTTFTQAVKDSNWVLAMEKEFSALQRNNTWHL 934

Query: 902  VPFNSDMSVIDNKWVFRVKQKSDGSVDRYKARLVAKGFQQTAGVDYFE 1045
            VP  S+ ++I  KWV+++K K DG+VDRYKARLVA+GF QT G+DYFE
Sbjct: 935  VPPPSNGNIIGCKWVYKLKYKPDGTVDRYKARLVAQGFTQTLGLDYFE 982


>emb|CAN68623.1| hypothetical protein VITISV_010681 [Vitis vinifera]
          Length = 846

 Score =  187 bits (475), Expect = 6e-45
 Identities = 88/149 (59%), Positives = 106/149 (71%)
 Frame = +2

Query: 14  LANLGIKFRHPCPHSHQQNGRAERKHLHIVEIGLSFLAQAQLPLKYWWHAFSSAVFVINF 193
           LA  GI  R  CPH+ QQNG AERKH  IVE GL+ L  A LPLK+W  +F + V++ N 
Sbjct: 243 LAENGIVHRVSCPHTQQQNGVAERKHRTIVEHGLTLLHTASLPLKFWDESFRTVVYLSNR 302

Query: 194 LPTPVLHHFSPYQILLKQPPDYHFLKVFGCTCYPFLRPYNSHKFQYRSSKCVFLGYSDSH 373
           LPT VLHH  P ++L K  PDY FLKVFGC+C+P LRPYN+HK QYRS +C FLGYS  H
Sbjct: 303 LPTAVLHHKCPIEVLFKSIPDYSFLKVFGCSCFPNLRPYNTHKLQYRSEECTFLGYSLKH 362

Query: 374 KGYKCLDSTGRIYIASTVEFNENEFPFSE 460
           KGYKC+ S GR+YI+  V FNE  F +S+
Sbjct: 363 KGYKCMFSNGRVYISRDVIFNETSFSYSK 391



 Score = 62.0 bits (149), Expect = 4e-07
 Identities = 31/62 (50%), Positives = 38/62 (61%)
 Frame = +2

Query: 722 HPMVTRSKSGIFKPKTYSVTSLPPLILEPVSVAQALSIPQWKEAMQIEFDALIAKETWTL 901
           HPM+TR KSGI KPK + V      + EP SVA A    +WK+ M  E+DAL    TW+L
Sbjct: 496 HPMITRGKSGIVKPKIFIVA-----VREPSSVAAAFQQDEWKKTMVAEYDALQRNNTWSL 550

Query: 902 VP 907
           VP
Sbjct: 551 VP 552