BLASTX nr result
ID: Rehmannia23_contig00029102
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia23_contig00029102
(1170 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme... 313 7e-83
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 298 4e-78
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 298 4e-78
ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme... 295 2e-77
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 285 2e-74
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 285 2e-74
gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus no... 281 4e-73
gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus pe... 270 8e-70
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme... 267 5e-69
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 265 3e-68
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A... 263 8e-68
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu... 259 2e-66
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme... 254 5e-65
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid... 253 1e-64
dbj|BAF01243.1| hypothetical protein [Arabidopsis thaliana] 253 1e-64
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr... 249 2e-63
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps... 246 1e-62
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 244 6e-62
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 244 6e-62
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid... 243 1e-61
>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 1110
Score = 313 bits (803), Expect = 7e-83
Identities = 163/311 (52%), Positives = 215/311 (69%), Gaps = 5/311 (1%)
Frame = +3
Query: 3 AYEMATGDFDGDMYWVSRNPELLKYFKANKPWTRSNSVPQSKKRNPQEFSDVXXXXXXXX 182
A E+A GDFDGD YWVS+NP+LLKYF A++PW+R +S P++ R P FS
Sbjct: 794 ATEIANGDFDGDKYWVSQNPQLLKYFTASRPWSRIHSTPKTLHREPNNFSAEEREHDLFQ 853
Query: 183 XXXXARSPSFSMATAADSWLTYMDRLLILGDHCATEKI---SLKDKMIQLVDIYYDALDA 353
R P++SMA A+ +W MDRLLILG + TE S+K+K+ +L+D+YYDA+DA
Sbjct: 854 TFLETRMPNYSMADASANWYALMDRLLILGKNNTTENEEIKSVKEKLFELIDLYYDAIDA 913
Query: 354 PKTGNKVPVPIELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQKEIWKMS 533
PK+GNKV +P L+VD FPH +++ SY S SVLG+IYD V+ FK+E EI K+S
Sbjct: 914 PKSGNKVYIPKRLKVDKFPHFLQK--KESYHSTSVLGEIYDRVEKFKAEEPAAVEIKKLS 971
Query: 534 CFDVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLYEAPDMEES 713
F+V IP+ + +W+ RY NYR EM +ALN+ ESKND A++VIKKYKQLLYEAPDMEES
Sbjct: 972 AFEVGIPDTCLRLWEERYRNYRFEMKEALNTSSESKNDLADQVIKKYKQLLYEAPDMEES 1031
Query: 714 PKDSEVIYDEAIAIYHVTYDYAMGHG-VEKCGFAWRVAGSALCSLCAWKLAGP-KEKPIV 887
+ + +Y++A+AIY VTYDYA G V KCGFAW+VAG+ALC L A A +K +
Sbjct: 1032 IRSTTDMYNDALAIYCVTYDYAKAIGDVRKCGFAWKVAGAALCKLHAELHAKEHNQKVMA 1091
Query: 888 ILPSVLRDLLN 920
+ PS+L LLN
Sbjct: 1092 MSPSILHKLLN 1102
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 298 bits (762), Expect = 4e-78
Identities = 158/309 (51%), Positives = 202/309 (65%), Gaps = 3/309 (0%)
Frame = +3
Query: 3 AYEMATGDFDGDMYWVSRNPELLKYFKANKPWTRSNSVPQSKKRNPQEFSDVXXXXXXXX 182
A EMA DFDGDMYWVSRN +LL+YF+A++PW R S + P +FS
Sbjct: 626 ADEMANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQ 685
Query: 183 XXXXAR-SPSFSMATAADSWLTYMDRLLILGDHCATEKISLKDKMIQLVDIYYDALDAPK 359
R S ++ AAD+WL +MDRLL L D C+ EK LK KM++L DIYYDALDAPK
Sbjct: 686 LFLTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPK 745
Query: 360 TGNKVPVPIELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQKEIWKMSCF 539
+G KV V EL+ + FPH M G +SSY S S+LGQIYD V++F+ E KEIW++ F
Sbjct: 746 SGMKVNVSKELKAEKFPHFM--GRESSYHSTSILGQIYDAVESFQPENQSTKEIWRLPLF 803
Query: 540 DVP-IPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLYEAPDMEESP 716
++ +P+ + WK RYD YR EMA AL G E+K++ A EVI KYKQ+LY A + EESP
Sbjct: 804 NIDAVPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQILYGAAEFEESP 863
Query: 717 KDSEVIYDEAIAIYHVTYDYAM-GHGVEKCGFAWRVAGSALCSLCAWKLAGPKEKPIVIL 893
++ E I+DEA+AIYHVTY++ + G V C F WRVAG ALC L KL EK +V +
Sbjct: 864 RNLEDIFDEALAIYHVTYEFVINGARVSYCNFPWRVAGRALCKLYTVKLG---EKSMVCV 920
Query: 894 PSVLRDLLN 920
PSVLR + N
Sbjct: 921 PSVLRQVFN 929
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 298 bits (762), Expect = 4e-78
Identities = 158/309 (51%), Positives = 202/309 (65%), Gaps = 3/309 (0%)
Frame = +3
Query: 3 AYEMATGDFDGDMYWVSRNPELLKYFKANKPWTRSNSVPQSKKRNPQEFSDVXXXXXXXX 182
A EMA DFDGDMYWVSRN +LL+YF+A++PW R S + P +FS
Sbjct: 640 ADEMANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQ 699
Query: 183 XXXXAR-SPSFSMATAADSWLTYMDRLLILGDHCATEKISLKDKMIQLVDIYYDALDAPK 359
R S ++ AAD+WL +MDRLL L D C+ EK LK KM++L DIYYDALDAPK
Sbjct: 700 LFLTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPK 759
Query: 360 TGNKVPVPIELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQKEIWKMSCF 539
+G KV V EL+ + FPH M G +SSY S S+LGQIYD V++F+ E KEIW++ F
Sbjct: 760 SGMKVNVSKELKAEKFPHFM--GRESSYHSTSILGQIYDAVESFQPENQSTKEIWRLPLF 817
Query: 540 DVP-IPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLYEAPDMEESP 716
++ +P+ + WK RYD YR EMA AL G E+K++ A EVI KYKQ+LY A + EESP
Sbjct: 818 NIDAVPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQILYGAAEFEESP 877
Query: 717 KDSEVIYDEAIAIYHVTYDYAM-GHGVEKCGFAWRVAGSALCSLCAWKLAGPKEKPIVIL 893
++ E I+DEA+AIYHVTY++ + G V C F WRVAG ALC L KL EK +V +
Sbjct: 878 RNLEDIFDEALAIYHVTYEFVINGARVSYCNFPWRVAGRALCKLYTVKLG---EKSMVCV 934
Query: 894 PSVLRDLLN 920
PSVLR + N
Sbjct: 935 PSVLRQVFN 943
>ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 1011
Score = 295 bits (756), Expect = 2e-77
Identities = 150/306 (49%), Positives = 205/306 (66%), Gaps = 1/306 (0%)
Frame = +3
Query: 3 AYEMATGDFDGDMYWVSRNPELLKYFKANKPWTRSNSVPQSKKRNPQEFSDVXXXXXXXX 182
A E+A GDFDGDMYWVS N +L+ + ++PW R +S P + + P EFS
Sbjct: 709 ATEIANGDFDGDMYWVSINRKLVDSYTTSRPWIRMHSTPNAVSKKPSEFSADELEYELFR 768
Query: 183 XXXXARSPSFSMATAADSWLTYMDRLLILGDHCATEKISLKDKMIQLVDIYYDALDAPKT 362
A+S +M+ AADSWL +MDRLL L D + SLK KM+ L+DIYYDALDAPK+
Sbjct: 769 QFLEAKSKGANMSLAADSWLAFMDRLLTLRDDNVDDMHSLKGKMLHLIDIYYDALDAPKS 828
Query: 363 GNKVPVPIELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQKEIWKMSCFD 542
G KV +P L+ + FPH+ME+G SY S S+LGQIYD V ++ E + EI K+ CF+
Sbjct: 829 GKKVSIPHYLKANKFPHYMEKGNSCSYHSTSILGQIYDHVDSYPDEDLCITEISKLPCFE 888
Query: 543 VPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLYEAPDMEESPKD 722
V IP+ + +W+ RY+ Y+K+M +A+N E + + NEVIKKYK LLY A + E++ +
Sbjct: 889 VEIPQRCMTLWRGRYEEYKKDMTRAMNFDCELRITSCNEVIKKYKMLLYGAVEFEQTVRK 948
Query: 723 SEVIYDEAIAIYHVTYDYA-MGHGVEKCGFAWRVAGSALCSLCAWKLAGPKEKPIVILPS 899
+E I+DEA+AIYHVTYD A + + +EKCGFAW+VAGSALC + A KEK + ILPS
Sbjct: 949 TEDIFDEALAIYHVTYDNARITYSIEKCGFAWKVAGSALCRIHAMY---RKEKDLPILPS 1005
Query: 900 VLRDLL 917
VL+++L
Sbjct: 1006 VLQEIL 1011
>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334280|gb|ERP58267.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 877
Score = 285 bits (730), Expect = 2e-74
Identities = 148/308 (48%), Positives = 199/308 (64%), Gaps = 3/308 (0%)
Frame = +3
Query: 3 AYEMATGDFDGDMYWVSRNPELLKYFKANKPWTRSNSVPQSKKRNPQEFSDVXXXXXXXX 182
A EM+ GDFDGDM++VSRNP+LL+ FK +PWT S S P R P EFSD
Sbjct: 573 ADEMSGGDFDGDMFFVSRNPQLLETFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFK 632
Query: 183 XXXXAR-SPSFSMATAADSWLTYMDRLLILGDHCATEKISLKDKMIQLVDIYYDALDAPK 359
R PS ++ AADSWL MDRLL LG+ CA E + +K+ + L+DIYYDALDAPK
Sbjct: 633 LFLRNRFQPSSTVGVAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPK 692
Query: 360 TGNK-VPVPIELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQKEIWKMSC 536
G + + VP L+ + FPH M + +YRS S+LG+IYD V+A++ + ++WK+ C
Sbjct: 693 KGGRRIEVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKLPC 752
Query: 537 FDVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLYEAPDMEESP 716
FD + E+Y+ WK Y YRKEM AL +G+ES ND ANEVI+KYK+ LYEA + S
Sbjct: 753 FDDEVHELYLVKWKELYGQYRKEMRNALKAGEES-NDKANEVIRKYKEFLYEAAEFNLSK 811
Query: 717 KDSEVIYDEAIAIYHVTYDYAMGHG-VEKCGFAWRVAGSALCSLCAWKLAGPKEKPIVIL 893
+ E I++EA+A+Y V+Y++A G V C FAWRVAG ALC+L K G E+P++
Sbjct: 812 RRDEEIFEEAMALYQVSYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKNQG--ERPMICS 869
Query: 894 PSVLRDLL 917
PS L+ +L
Sbjct: 870 PSALKGIL 877
>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334279|gb|ERP58266.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 899
Score = 285 bits (730), Expect = 2e-74
Identities = 148/308 (48%), Positives = 199/308 (64%), Gaps = 3/308 (0%)
Frame = +3
Query: 3 AYEMATGDFDGDMYWVSRNPELLKYFKANKPWTRSNSVPQSKKRNPQEFSDVXXXXXXXX 182
A EM+ GDFDGDM++VSRNP+LL+ FK +PWT S S P R P EFSD
Sbjct: 595 ADEMSGGDFDGDMFFVSRNPQLLETFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFK 654
Query: 183 XXXXAR-SPSFSMATAADSWLTYMDRLLILGDHCATEKISLKDKMIQLVDIYYDALDAPK 359
R PS ++ AADSWL MDRLL LG+ CA E + +K+ + L+DIYYDALDAPK
Sbjct: 655 LFLRNRFQPSSTVGVAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPK 714
Query: 360 TGNK-VPVPIELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQKEIWKMSC 536
G + + VP L+ + FPH M + +YRS S+LG+IYD V+A++ + ++WK+ C
Sbjct: 715 KGGRRIEVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKLPC 774
Query: 537 FDVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLYEAPDMEESP 716
FD + E+Y+ WK Y YRKEM AL +G+ES ND ANEVI+KYK+ LYEA + S
Sbjct: 775 FDDEVHELYLVKWKELYGQYRKEMRNALKAGEES-NDKANEVIRKYKEFLYEAAEFNLSK 833
Query: 717 KDSEVIYDEAIAIYHVTYDYAMGHG-VEKCGFAWRVAGSALCSLCAWKLAGPKEKPIVIL 893
+ E I++EA+A+Y V+Y++A G V C FAWRVAG ALC+L K G E+P++
Sbjct: 834 RRDEEIFEEAMALYQVSYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKNQG--ERPMICS 891
Query: 894 PSVLRDLL 917
PS L+ +L
Sbjct: 892 PSALKGIL 899
>gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus notabilis]
Length = 521
Score = 281 bits (719), Expect = 4e-73
Identities = 155/326 (47%), Positives = 201/326 (61%), Gaps = 21/326 (6%)
Frame = +3
Query: 3 AYEMATGDFDGDMYWVSRNPELLKYFKANKPWTRSNSVPQSKKRNPQEFSDVXXXXXXXX 182
A EMA GDFDGDM+WVSRNPELLKYFK + PW + +S + K + P + SD
Sbjct: 200 ADEMAGGDFDGDMFWVSRNPELLKYFKPSDPWIKKSSTGKVKSKQPIDLSDRELEDELIK 259
Query: 183 XXXXAR-SPSFSMATAADSWLTYMDRLLILGDHCATEKISLKDKMIQLVDIYYDALDAPK 359
R PSF+ + A++ WL MDR L LGD C EK ++KD + +LVDIYYDALDAPK
Sbjct: 260 LFLTVRFKPSFAKSEASEGWLALMDRFLTLGDDCVAEKNAVKDNLFELVDIYYDALDAPK 319
Query: 360 TGNK-------------------VPVPIELRVDTFPHHMERGLDSSYRSISVLGQIYDMV 482
G K V VP EL+ + FPH+ME+ +S+ S S+LG IYD V
Sbjct: 320 QGGKQQDLAKFFEAYAALELSFQVEVPRELKPNRFPHYMEK--QNSFHSRSILGWIYDEV 377
Query: 483 QAFKSEAVPQKEIWKMSCFDVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEV 662
A++ E KEI+K+ F+V +PE + WKA Y +YR +M AL + D K +AA EV
Sbjct: 378 DAYQLEDHSNKEIFKLPHFEVEVPEACLTKWKAHYKDYRDDMCDALLAKDVGKTEAAEEV 437
Query: 663 IKKYKQLLYEAPDMEESPKDSEVIYDEAIAIYHVTYDYAMG-HGVEKCGFAWRVAGSALC 839
+KYK+LLY A ++EES K E IY+EA+AIYHV YDYA+ V C FAW +AGSAL
Sbjct: 438 KRKYKRLLYGAEELEESTKKMEEIYNEALAIYHVCYDYAISQRKVSYCSFAWNIAGSALL 497
Query: 840 SLCAWKLAGPKEKPIVILPSVLRDLL 917
L A+K G E+ LPSVL+++L
Sbjct: 498 KLHAFKKIG--ERAFFCLPSVLKEVL 521
>gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus persica]
Length = 798
Score = 270 bits (690), Expect = 8e-70
Identities = 150/310 (48%), Positives = 202/310 (65%), Gaps = 5/310 (1%)
Frame = +3
Query: 3 AYEMATGDFDGDMYWVSRNPELLKYFKANKPWTR-SNSVPQSKKRNPQEFSDVXXXXXXX 179
A EM GDFDGD+YWVSRNP+LL+ FK ++PW S+S P+ P E
Sbjct: 494 ADEMGGGDFDGDLYWVSRNPQLLECFKPSEPWIEASSSTPKVASTRPSELLPNHIEDALI 553
Query: 180 XXXXXAR-SPSFSMATAADSWLTYMDRLLILGDHCATEKISLKDKMIQLVDIYYDALDAP 356
R PSF+M+ A+DSWL MDRLLILGD +EK +K M++LVD+YY+ALDAP
Sbjct: 554 KLFLKTRFEPSFAMSEASDSWLAMMDRLLILGDSSNSEKTHVKANMLRLVDLYYEALDAP 613
Query: 357 KTGNKVPVPIELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQKEIWKMSC 536
K G KV VP EL+ + FPH+MER +SY+S S+LG IYD V A+++E KE+ K+
Sbjct: 614 KKGGKVVVPGELKSNLFPHYMER--VNSYKSTSILGLIYDTVNAYQAEDASIKEVKKLPM 671
Query: 537 FDVPIPEIYVEMWKARYDNYRKEMAKALNSGD-ESKNDAANEVIKKYKQLLY-EAPDMEE 710
FDV +PE ++ W+ Y +YR EM+ A+ D +SKN+AA++V++KYK++LY A D+E
Sbjct: 672 FDVEVPEECLKKWREHYQHYRSEMSSAMQDDDRDSKNNAADKVLRKYKEILYGGAEDLEN 731
Query: 711 SPKDSEVIYDEAIAIYHVTYDYAMGHG-VEKCGFAWRVAGSALCSLCAWKLAGPKEKPIV 887
S + I+DEA+AIY VTYD+A+ G V KC FAW+VAGSALC K + I
Sbjct: 732 STRPLHEIFDEALAIYRVTYDHAISQGAVGKCCFAWKVAGSALCKYYMNKQGA---RTIE 788
Query: 888 ILPSVLRDLL 917
SVL+DL+
Sbjct: 789 ASFSVLKDLV 798
>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
sativus]
Length = 1056
Score = 267 bits (683), Expect = 5e-69
Identities = 142/306 (46%), Positives = 193/306 (63%), Gaps = 2/306 (0%)
Frame = +3
Query: 3 AYEMATGDFDGDMYWVSRNPELLKYFKANKPWTRSNSVPQSKKRNPQEFSDVXXXXXXXX 182
A E+A GDFDGDMYWVSRN +LL+YF+ +PW S S + P+EFS
Sbjct: 754 ADEIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNKKPKEFSADELENELFK 813
Query: 183 XXXXAR-SPSFSMATAADSWLTYMDRLLILGDHCATEKISLKDKMIQLVDIYYDALDAPK 359
R PS++ + AAD+WL MD+ L+LG+ E+ ++ K++QL++IYYDALDAPK
Sbjct: 814 LFLSTRFQPSYAKSVAADNWLALMDQFLMLGEERKEERNCIRAKILQLINIYYDALDAPK 873
Query: 360 TGNK-VPVPIELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQKEIWKMSC 536
G K + VP L+ T PH MERG +SY S S+LGQI+D ++ E VP E+ K+ C
Sbjct: 874 KGGKKIEVPKHLKAGTLPHFMERG-KNSYVSTSILGQIFDTANMYQEE-VPNIEVQKLPC 931
Query: 537 FDVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLYEAPDMEESP 716
F+ +PE WK Y+ YRK+M A+ ++KN AA IKKYK++LY A ++E SP
Sbjct: 932 FEEELPEYIFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSP 991
Query: 717 KDSEVIYDEAIAIYHVTYDYAMGHGVEKCGFAWRVAGSALCSLCAWKLAGPKEKPIVILP 896
+ +E +Y EA+AIY VTYD+AM V CGFAW+VAGSAL L A K E+ LP
Sbjct: 992 RSNEEVYQEALAIYQVTYDHAMSRSVRNCGFAWKVAGSALFKLYAIK---HSERSFHCLP 1048
Query: 897 SVLRDL 914
SV+R++
Sbjct: 1049 SVMREI 1054
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 265 bits (677), Expect = 3e-68
Identities = 144/310 (46%), Positives = 197/310 (63%), Gaps = 8/310 (2%)
Frame = +3
Query: 9 EMATGDFDGDMYWVSRNPELLKYFKANKPW------TRSNSVPQSKKRNPQEFSDVXXXX 170
E+A GDFDGDMY++SRNPELL++FK ++PW ++SNS + +P+E +
Sbjct: 681 EIAGGDFDGDMYFISRNPELLEHFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEM 740
Query: 171 XXXXXXXXARSPSFSMATAADSWLTYMDRLLILGDHCATEKISLKDKMIQLVDIYYDALD 350
+ + AADSWLT MDRLLILGD A EK +K KM++L+DIYYDALD
Sbjct: 741 FLKAGFHASNV----IGIAADSWLTIMDRLLILGDERAEEKAEMKKKMLKLIDIYYDALD 796
Query: 351 APKTGNKVPVPIELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQA-FKSEAVPQKEIWK 527
APK G+KV +P ELR D FPH+MER + ++S S+LG IYD V++ E P EI K
Sbjct: 797 APKKGDKVYLPNELRPDIFPHYMER--EKKFKSTSILGLIYDFVKSQTTEEPTPSSEISK 854
Query: 528 MSCF-DVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLYEAPDM 704
+ CF D P+ E ++E + YDNYR EM +A+ + K+++ANEVI++YKQ Y A
Sbjct: 855 LPCFEDEPVSEFHMEKCRRWYDNYRSEMTQAMKT---DKDESANEVIQRYKQEFYGAAGF 911
Query: 705 EESPKDSEVIYDEAIAIYHVTYDYAMGHGVEKCGFAWRVAGSALCSLCAWKLAGPKEKPI 884
E+S K E +Y +A+ +Y + YDYA+ GV KCGF W+VAG LC K +EK +
Sbjct: 912 EDSKKSLEELYPQALTLYKIVYDYAIHAGVSKCGFVWKVAGPVLCRFYLMKKM--QEKSL 969
Query: 885 VILPSVLRDL 914
V PSVL++L
Sbjct: 970 VCAPSVLKEL 979
>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
gi|548857326|gb|ERN15132.1| hypothetical protein
AMTR_s00056p00110240 [Amborella trichopoda]
Length = 988
Score = 263 bits (673), Expect = 8e-68
Identities = 148/307 (48%), Positives = 193/307 (62%), Gaps = 2/307 (0%)
Frame = +3
Query: 3 AYEMATGDFDGDMYWVSRNPELLKYFKANKPWTRSNSVPQSKKRNPQEFSDVXXXXXXXX 182
A E+A GDFDGDMYW+S NPELL YFKA PW RS+S +R P E+S
Sbjct: 688 ADEIANGDFDGDMYWISTNPELLHYFKAGPPWERSSSEKPPPQRKPIEYSPDELETELFD 747
Query: 183 XXXXAR-SPSFSMATAADSWLTYMDRLLILGDHCATEKISLKDKMIQLVDIYYDALDAPK 359
+R PS + AADSWL YMDRLL LGD CA EK L KM++L D+YY+A+DAPK
Sbjct: 748 LFLESRFHPSIAKCAAADSWLVYMDRLLTLGDECAEEKGCLHQKMLKLADLYYEAVDAPK 807
Query: 360 TGNKVPVPIELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQKEIWKMSCF 539
+G KV VP +L+ + +PH MER Y S S+LGQIYD+V + + + VP ++I + CF
Sbjct: 808 SGKKVEVPKDLKPERYPHFMER--TYQYTSTSILGQIYDLVASAQMD-VPCEDIELLPCF 864
Query: 540 DVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLYEAPDMEESPK 719
+ +E WK Y YR EM KAL+S D+ K++ A+EVI+ YK++LY A + EE +
Sbjct: 865 LEEVEPSGMEKWKGLYAQYRDEMNKALSSTDQKKSN-ADEVIQNYKKILYGAQEYEERTR 923
Query: 720 DSEVIYDEAIAIYHVTYDYAMGHG-VEKCGFAWRVAGSALCSLCAWKLAGPKEKPIVILP 896
E I+ EA IY ++Y YA + KCGFAW+VAG ALC L A K K+ I L
Sbjct: 924 PREEIFREACEIYAISYFYAKEKSDIAKCGFAWKVAGCALCELHALK---QKKNSITCLS 980
Query: 897 SVLRDLL 917
SVL++LL
Sbjct: 981 SVLQELL 987
>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
gi|550336519|gb|ERP59562.1| hypothetical protein
POPTR_0006s17780g [Populus trichocarpa]
Length = 866
Score = 259 bits (661), Expect = 2e-66
Identities = 145/308 (47%), Positives = 188/308 (61%), Gaps = 3/308 (0%)
Frame = +3
Query: 3 AYEMATGDFDGDMYWVSRNPELLKYFKANKPWTRSNSVPQSKKRNPQEFSDVXXXXXXXX 182
A EM+ GDFDGDM++VSRNP LL+ FK +PWT S S P R P EFSD
Sbjct: 573 ADEMSGGDFDGDMFFVSRNPRLLENFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFK 632
Query: 183 XXXXAR-SPSFSMATAADSWLTYMDRLLILGDHCATEKISLKDKMIQLVDIYYDALDAPK 359
R PSF++ AADSWL MDRLL LG+ C E +K + L+DIYYDALDAPK
Sbjct: 633 LFLRNRFQPSFTVGVAADSWLAMMDRLLTLGNDCTEEIACVKKNINLLIDIYYDALDAPK 692
Query: 360 T-GNKVPVPIELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQKEIWKMSC 536
G K+ VP L+ + FPH ME+ +YRS S+LG+IYD V+A++ +
Sbjct: 693 KGGRKIEVPEALKAELFPHFMEKHEKKTYRSTSILGKIYDKVKAYEDMDLSSN------- 745
Query: 537 FDVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLYEAPDMEESP 716
+ E + WK Y YR EM AL +G E KN+ ANEVIKKYK++LYEA + S
Sbjct: 746 ----VHESCLVKWKGLYGQYRTEMRNALQAGKE-KNNEANEVIKKYKEILYEAAEFNLSR 800
Query: 717 KDSEVIYDEAIAIYHVTYDYAMGHG-VEKCGFAWRVAGSALCSLCAWKLAGPKEKPIVIL 893
+ E I++EA A+Y VTY++A G V KCGFAWRVAG ALC+L + L +E+P++
Sbjct: 801 RRDEEIFEEARALYQVTYNHAKRQGAVGKCGFAWRVAGLALCTL--YVLKNQEERPLICS 858
Query: 894 PSVLRDLL 917
PS L+ +L
Sbjct: 859 PSALKGIL 866
>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
vesca subsp. vesca]
Length = 1405
Score = 254 bits (649), Expect = 5e-65
Identities = 145/310 (46%), Positives = 197/310 (63%), Gaps = 5/310 (1%)
Frame = +3
Query: 3 AYEMATGDFDGDMYWVSRNPELLKYFKANKPWTRSN-SVPQSKKRNPQEFSDVXXXXXXX 179
A EM GDFDGD+YWVSRNP+LL+++K ++PW ++ S ++ R P + S
Sbjct: 1101 ADEMGGGDFDGDLYWVSRNPQLLEWYKPSEPWIEASISTKKNPSRCPSDHSPEDLEDVLF 1160
Query: 180 XXXXXAR-SPSFSMATAADSWLTYMDRLLILGDHCATEKISLKDKMIQLVDIYYDALDAP 356
R PSF+M+ AAD+WL +MD L LGD EK ++K+K++QLVD+YY ALDA
Sbjct: 1161 RSFLTTRFEPSFAMSEAADNWLAWMDHFLTLGDSNIHEKNNVKEKILQLVDLYYTALDAA 1220
Query: 357 KTGNKVPVPIELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQKEIWKMSC 536
K G KV VP EL+V FPH+M G + SY S S+LG IY+ V ++E KE+ K+
Sbjct: 1221 KKGVKVDVPKELKVSCFPHYM--GKNRSYPSTSILGSIYNRVDEHQTEDRSLKEVEKLPA 1278
Query: 537 FDV-PIPEIYVEMWKARYDNYRKEMAKALNSGD-ESKNDAANEVIKKYKQLLYEAPDMEE 710
FD +P+ ++ W + YRKEMA AL+ D +SKN +A+ VI+KY+++LYEA D EE
Sbjct: 1279 FDENEVPDACLDKWAELHRQYRKEMASALDDDDKQSKNQSADVVIRKYRKILYEANDFEE 1338
Query: 711 SPKDSEVIYDEAIAIYHVTYDYAMGHG-VEKCGFAWRVAGSALCSLCAWKLAGPKEKPIV 887
S + E IY+EA AIYHV YD+A G V+ C FAWRVAG ALC L A E+
Sbjct: 1339 SRRPIEEIYNEAHAIYHVCYDHAKRVGNVKVCSFAWRVAGKALCQLHA---RNNNERFCT 1395
Query: 888 ILPSVLRDLL 917
I+ SVL ++L
Sbjct: 1396 IVSSVLMEIL 1405
>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 5;
Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
polymerase 5 [Arabidopsis thaliana]
Length = 977
Score = 253 bits (646), Expect = 1e-64
Identities = 140/310 (45%), Positives = 195/310 (62%), Gaps = 8/310 (2%)
Frame = +3
Query: 9 EMATGDFDGDMYWVSRNPELLKYFKANKPW------TRSNSVPQSKKRNPQEFSDVXXXX 170
E+A GDFDGDMY++SRNPELL+ FK ++PW ++SNS + +P+E +
Sbjct: 677 EIAGGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEM 736
Query: 171 XXXXXXXXARSPSFSMATAADSWLTYMDRLLILGDHCATEKISLKDKMIQLVDIYYDALD 350
+ + AADSWLT MDR LILGD A EK +K KM++L+DIYYDALD
Sbjct: 737 FLTAGFHASNV----IGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALD 792
Query: 351 APKTGNKVPVPIELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQA-FKSEAVPQKEIWK 527
APK G+KV +P +L+ D FPH+MER D ++S S+LG I+D V++ E P EI K
Sbjct: 793 APKKGDKVYLPNKLKPDIFPHYMER--DKKFQSTSILGLIFDFVKSQTTEEPSPSSEISK 850
Query: 528 MSCF-DVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLYEAPDM 704
+ CF D P+ E +++ + YDNYR EM +A+ + K+++ANEVI++YKQ Y A
Sbjct: 851 LPCFEDEPVSEFHMQKCRLWYDNYRTEMTQAMKT---DKDESANEVIQRYKQEFYGAAGF 907
Query: 705 EESPKDSEVIYDEAIAIYHVTYDYAMGHGVEKCGFAWRVAGSALCSLCAWKLAGPKEKPI 884
E+S K E +Y +A+A+Y + YDYA+ GV KC F W+VAG LC K +EK +
Sbjct: 908 EDSKKSLEELYPQALALYKIVYDYAIHAGVSKCRFVWKVAGPVLCRFYLNKKM--QEKCL 965
Query: 885 VILPSVLRDL 914
V PSVL++L
Sbjct: 966 VCAPSVLKEL 975
>dbj|BAF01243.1| hypothetical protein [Arabidopsis thaliana]
Length = 339
Score = 253 bits (646), Expect = 1e-64
Identities = 140/310 (45%), Positives = 195/310 (62%), Gaps = 8/310 (2%)
Frame = +3
Query: 9 EMATGDFDGDMYWVSRNPELLKYFKANKPW------TRSNSVPQSKKRNPQEFSDVXXXX 170
E+A GDFDGDMY++SRNPELL+ FK ++PW ++SNS + +P+E +
Sbjct: 39 EIAGGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEM 98
Query: 171 XXXXXXXXARSPSFSMATAADSWLTYMDRLLILGDHCATEKISLKDKMIQLVDIYYDALD 350
+ + AADSWLT MDR LILGD A EK +K KM++L+DIYYDALD
Sbjct: 99 FLTAGFHASNV----IGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALD 154
Query: 351 APKTGNKVPVPIELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQA-FKSEAVPQKEIWK 527
APK G+KV +P +L+ D FPH+MER D ++S S+LG I+D V++ E P EI K
Sbjct: 155 APKKGDKVYLPNKLKPDIFPHYMER--DKKFQSTSILGLIFDFVKSQTTEEPSPSSEISK 212
Query: 528 MSCF-DVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLYEAPDM 704
+ CF D P+ E +++ + YDNYR EM +A+ + K+++ANEVI++YKQ Y A
Sbjct: 213 LPCFEDEPVSEFHMQKCRLWYDNYRTEMTQAMKT---DKDESANEVIQRYKQEFYGAAGF 269
Query: 705 EESPKDSEVIYDEAIAIYHVTYDYAMGHGVEKCGFAWRVAGSALCSLCAWKLAGPKEKPI 884
E+S K E +Y +A+A+Y + YDYA+ GV KC F W+VAG LC K +EK +
Sbjct: 270 EDSKKSLEELYPQALALYKIVYDYAIHAGVSKCRFVWKVAGPVLCRFYLNKKM--QEKCL 327
Query: 885 VILPSVLRDL 914
V PSVL++L
Sbjct: 328 VCAPSVLKEL 337
>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
gi|557110064|gb|ESQ50361.1| hypothetical protein
EUTSA_v10001897mg [Eutrema salsugineum]
Length = 988
Score = 249 bits (635), Expect = 2e-63
Identities = 144/307 (46%), Positives = 190/307 (61%), Gaps = 5/307 (1%)
Frame = +3
Query: 9 EMATGDFDGDMYWVSRNPELLKYFKANKPWTRSNSVPQSKK-RNPQEFSDVXXXXXXXXX 185
E+A GDFDGDMY++SRNPELL+ FK ++PW + +S R P +FS
Sbjct: 689 EIAGGDFDGDMYFISRNPELLEQFKPSEPWVSLSPPSKSNSTRKPIDFSPEELEEELFDM 748
Query: 186 XXXARSPSFSM-ATAADSWLTYMDRLLILGDHCATEKISLKDKMIQLVDIYYDALDAPKT 362
AR S ++ AADSWLT MDR L LGD A EK +K KM+ L+DIYYDALDA K
Sbjct: 749 FLKARFHSSNVIGMAADSWLTIMDRFLTLGDERAEEKAEMKRKMLSLIDIYYDALDAAKK 808
Query: 363 GNKVPVPIELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEA-VPQKEIWKMSCF 539
G KV +P L+ D FPH+MER D ++S S+LG IYD VQ+ +E P EI K+ CF
Sbjct: 809 GVKVSLPDALKPDIFPHYMER--DKKFKSTSILGIIYDFVQSQTAEEHTPSSEISKLQCF 866
Query: 540 -DVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLYEAPDMEESP 716
D P+ E + E + YDNYR EM +AL+ +K+D A+EVI+KYKQ Y A E+S
Sbjct: 867 EDEPVSEFHKEKCRPWYDNYRAEMIQALS----NKDDTASEVIEKYKQEFYGAAGFEDSK 922
Query: 717 KDSEVIYDEAIAIYHVTYDYAMG-HGVEKCGFAWRVAGSALCSLCAWKLAGPKEKPIVIL 893
K E +Y +A+A+Y++ YDYA+ V KCGFAW+VAG LC K G K ++
Sbjct: 923 KSLEELYPQALALYNIVYDYAIEMKSVRKCGFAWKVAGPVLCRFYLKKTGG---KALLCS 979
Query: 894 PSVLRDL 914
S+L++L
Sbjct: 980 LSMLKEL 986
>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
gi|482565615|gb|EOA29804.1| hypothetical protein
CARUB_v10012898mg [Capsella rubella]
Length = 982
Score = 246 bits (629), Expect = 1e-62
Identities = 140/308 (45%), Positives = 190/308 (61%), Gaps = 6/308 (1%)
Frame = +3
Query: 9 EMATGDFDGDMYWVSRNPELLKYFKANKPWTRSNSVPQSKK---RNPQEFSDVXXXXXXX 179
E+A GDFDGD+Y++SRNPELL++FK ++PW + P SK R P +FS
Sbjct: 684 EIAGGDFDGDIYFISRNPELLEHFKPSEPWV--SLTPPSKSNSARGPCQFSPEELEEELF 741
Query: 180 XXXXXAR-SPSFSMATAADSWLTYMDRLLILGDHCATEKISLKDKMIQLVDIYYDALDAP 356
A S + AADSWLT MDR LILGD A EK +K KM++L+DIYYDALDAP
Sbjct: 742 EMFLKAGFHASNVIGMAADSWLTIMDRFLILGDESADEKAEMKQKMLELIDIYYDALDAP 801
Query: 357 KTGNKVPVPIELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQA-FKSEAVPQKEIWKMS 533
K G KV +P ELR D FPH+MER D ++S S+LG IYD VQ+ + P EI K+
Sbjct: 802 KKGAKVYLPNELRPDIFPHYMER--DKKFKSTSILGLIYDFVQSQTTKQPSPPSEINKLP 859
Query: 534 CF-DVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLYEAPDMEE 710
CF D P+ E +++ + YD Y+ EM A+N+ +K NE+I++ K+ Y A EE
Sbjct: 860 CFEDEPVSEFHMKECRRWYDEYKDEMTHAMNTDASNK----NEIIERCKEDFYGAASFEE 915
Query: 711 SPKDSEVIYDEAIAIYHVTYDYAMGHGVEKCGFAWRVAGSALCSLCAWKLAGPKEKPIVI 890
S K E +Y +A+A+Y++ YD+A GV +CGF W+VAG LC + L EK +V
Sbjct: 916 SKKSLEELYPQALALYNIVYDHATHAGVSRCGFVWKVAGPV---LCRFYLKKRHEKTLVS 972
Query: 891 LPSVLRDL 914
PSVL+++
Sbjct: 973 SPSVLKEI 980
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 244 bits (622), Expect = 6e-62
Identities = 139/307 (45%), Positives = 191/307 (62%), Gaps = 3/307 (0%)
Frame = +3
Query: 3 AYEMATGDFDGDMYWVSRNPELLKYFKANKPWTRSNSVPQSKKRNPQEFSDVXXXXXXXX 182
A E+A GDFDGDMY+VSRNPELLK+FK ++ W S S S + P +FS
Sbjct: 709 ADEIAGGDFDGDMYFVSRNPELLKHFKESERWM-STSKNLSANKRPIDFSLEELESELFK 767
Query: 183 XXXXAR-SPSFSMATAADSWLTYMDRLLILGDHCATEKISLKDKMIQLVDIYYDALDAPK 359
R PS + + AAD W MDR L LGD A EK ++K+ M++L++IYYDALDAPK
Sbjct: 768 LFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPK 827
Query: 360 -TGNKVPVPIELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQKEIWKMSC 536
+G KV VP +L+V+ FP +M R S+ S SVLG IY+ V+++++ EIWK+ C
Sbjct: 828 KSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPC 887
Query: 537 FDVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLYEAPDMEESP 716
FD +PE + WK YD YR EM +A++ + +AA VI+KYKQ+LY A + E+S
Sbjct: 888 FDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQST 947
Query: 717 KDSEVIYDEAIAIYHVTYDYAMG-HGVEKCGFAWRVAGSALCSLCAWKLAGPKEKPIVIL 893
+ E IY+EA+AIY++TYD A V C FAWRVAGSAL A + ++ ++
Sbjct: 948 RTLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARRQG---DRSMLCS 1004
Query: 894 PSVLRDL 914
SVLR++
Sbjct: 1005 ASVLREI 1011
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 244 bits (622), Expect = 6e-62
Identities = 139/307 (45%), Positives = 191/307 (62%), Gaps = 3/307 (0%)
Frame = +3
Query: 3 AYEMATGDFDGDMYWVSRNPELLKYFKANKPWTRSNSVPQSKKRNPQEFSDVXXXXXXXX 182
A E+A GDFDGDMY+VSRNPELLK+FK ++ W S S S + P +FS
Sbjct: 711 ADEIAGGDFDGDMYFVSRNPELLKHFKESERWM-STSKNLSANKRPIDFSLEELESELFK 769
Query: 183 XXXXAR-SPSFSMATAADSWLTYMDRLLILGDHCATEKISLKDKMIQLVDIYYDALDAPK 359
R PS + + AAD W MDR L LGD A EK ++K+ M++L++IYYDALDAPK
Sbjct: 770 LFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPK 829
Query: 360 -TGNKVPVPIELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQKEIWKMSC 536
+G KV VP +L+V+ FP +M R S+ S SVLG IY+ V+++++ EIWK+ C
Sbjct: 830 KSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPC 889
Query: 537 FDVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLYEAPDMEESP 716
FD +PE + WK YD YR EM +A++ + +AA VI+KYKQ+LY A + E+S
Sbjct: 890 FDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQST 949
Query: 717 KDSEVIYDEAIAIYHVTYDYAMG-HGVEKCGFAWRVAGSALCSLCAWKLAGPKEKPIVIL 893
+ E IY+EA+AIY++TYD A V C FAWRVAGSAL A + ++ ++
Sbjct: 950 RTLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARRQG---DRSMLCS 1006
Query: 894 PSVLRDL 914
SVLR++
Sbjct: 1007 ASVLREI 1013
>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
polymerase 3 [Arabidopsis thaliana]
Length = 992
Score = 243 bits (620), Expect = 1e-61
Identities = 135/307 (43%), Positives = 186/307 (60%), Gaps = 4/307 (1%)
Frame = +3
Query: 9 EMATGDFDGDMYWVSRNPELLKYFKANKPWTRSNSVPQSK-KRNPQEFSDVXXXXXXXXX 185
E+A GDFDGDMY++SRNP+LL++FK ++PW S+ + R P E S+
Sbjct: 688 EIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELEEELFKM 747
Query: 186 XXXARSPSFSM-ATAADSWLTYMDRLLILGDHCATEKISLKDKMIQLVDIYYDALDAPKT 362
AR + AAD WL MD L LGD A EK K +++L+DIYYDALDAPK
Sbjct: 748 FLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDALDAPKK 807
Query: 363 GNKVPVPIELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQKEIWKMSCF- 539
G KV +P +L + FPH+MER +RS S+LG I+D V + +E P EI K+ F
Sbjct: 808 GAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPSEISKLWYFE 867
Query: 540 DVPIPEIYVEMWKARYDNYRKEMAKALNSGDESK-NDAANEVIKKYKQLLYEAPDMEESP 716
D P+P+ +++ + + Y+NYR EM++A+ D+ K N NEVI++YKQ Y A E+S
Sbjct: 868 DEPVPKSHMDKFTSWYENYRSEMSQAMMETDKVKRNQLTNEVIQRYKQDFYGAAGFEDSN 927
Query: 717 KDSEVIYDEAIAIYHVTYDYAMGHGVEKCGFAWRVAGSALCSLCAWKLAGPKEKPIVILP 896
K E +Y +A+A+Y+V YDYA+ GV KC FAW VAG LC + L K+K +V
Sbjct: 928 KSLEELYPQALALYNVVYDYAIQEGVAKCTFAWNVAGPVLCK---FYLKKTKDKSVVAST 984
Query: 897 SVLRDLL 917
SVL+ LL
Sbjct: 985 SVLKKLL 991