BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00028997
         (654 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004292479.1| PREDICTED: putative ribonuclease H protein A...    45   1e-08
ref|XP_004292563.1| PREDICTED: putative ribonuclease H protein A...    44   3e-08
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...    59   1e-07
ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis ...    59   1e-07
gb|EMJ07893.1| hypothetical protein PRUPE_ppa024911mg [Prunus pe...    41   1e-07
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...    56   2e-07
gb|AAG51754.1|AC068667_33 reverse transcriptase, putative; 10003...    51   3e-07
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    52   3e-07
ref|XP_004301837.1| PREDICTED: putative ribonuclease H protein A...    52   5e-07
emb|CAB75484.1| putative protein [Arabidopsis thaliana]                59   2e-06
ref|XP_006491472.1| PREDICTED: uncharacterized protein LOC102626...    47   2e-06
ref|XP_006483194.1| PREDICTED: putative ribonuclease H protein A...    47   2e-06
ref|XP_002521812.1| conserved hypothetical protein [Ricinus comm...    49   2e-06
ref|XP_006577420.1| PREDICTED: putative ribonuclease H protein A...    41   4e-06
gb|AAF18538.1|AC006551_24 Very similar to retrotransposon revers...    57   5e-06
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1...    45   5e-06
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...    40   5e-06
gb|AAD17395.1| putative non-LTR retroelement reverse transcripta...    45   6e-06
gb|AAB84340.1| putative non-LTR retroelement reverse transcripta...    49   8e-06

>ref|XP_004292479.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 473

 Score = 45.1 bits (105), Expect(2) = 1e-08
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
 Frame = -2

Query: 653 IGKSRDMDPLFWYFNKSGIYSVNSEYALLSSDKLNKLFPESSWQHQHNKLIICKRSWKIR 474
           IG     D + W +NK G+Y+V+S Y  ++S K   + P         +  + ++ WKIR
Sbjct: 199 IGSHDGEDRIIWPWNKRGVYTVSSRYTWINS-KCRVINPPKCSSSHSVETAVWRQLWKIR 257

Query: 473 IKDKLR--TFIWKCFSG-ILPFNDLLISR 396
              K+    F+WK  SG I  F ++ I +
Sbjct: 258 APPKVNFFFFLWKAISGAIATFKNMFIRK 286



 Score = 40.8 bits (94), Expect(2) = 1e-08
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
 Frame = -3

Query: 406 LFLEE*MLDPLCHICGEVAETMEYLFFFCKRALIV*KMAPLDLEGLHDKQLNFCSWWLQI 227
           +F+ +    PLC ICG   E+ E++   C  A  V   + L L+   +      SW  +I
Sbjct: 282 MFIRKLASTPLCPICGAYEESNEHMLLLCPWAEAVWFGSSLGLKINKNHISTLDSWLKEI 341

Query: 226 CKLDNSKKYNDRIQLTTY---ILWWL*KTRNAWILQNTLKPEKATVVVAHNEWLEY 68
           CK  NS+   DRI + T    I W + K+R +++         A +  + N  LE+
Sbjct: 342 CKAHNSQ---DRIWVLTMVGCICWSIWKSRCSFVYDRRPISPPAVIQSSLNLALEF 394


>ref|XP_004292563.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 504

 Score = 43.9 bits (102), Expect(2) = 3e-08
 Identities = 28/95 (29%), Positives = 39/95 (41%)
 Frame = -2

Query: 653 IGKSRDMDPLFWYFNKSGIYSVNSEYALLSSDKLNKLFPESSWQHQHNKLIICKRSWKIR 474
           IG    +D   W +NK G+Y+V S Y    +       P     HQ +   I K  W I+
Sbjct: 153 IGDGEVLDCFLWPWNKIGVYTVRSGYHWYHTSMSIPRAPSIGSSHQFDPK-IWKILWSIK 211

Query: 473 IKDKLRTFIWKCFSGILPFNDLLISRGMNVRPSLP 369
              K+R F+W+   G  P    L  R +   P  P
Sbjct: 212 TLPKVRIFLWRVLHGAAPTMHSLHKRKIVSNPLCP 246



 Score = 40.4 bits (93), Expect(2) = 3e-08
 Identities = 28/105 (26%), Positives = 45/105 (42%)
 Frame = -3

Query: 382 DPLCHICGEVAETMEYLFFFCKRALIV*KMAPLDLEGLHDKQLNFCSWWLQICKLDNSKK 203
           +PLC +CG+  ET E+L   C     +   +PL +     K   F  W + I     S +
Sbjct: 242 NPLCPVCGKTEETFEHLLLLCHWVNPIWFGSPLGIRIDKRKITTFDRWLISIYNHCPSSE 301

Query: 202 YNDRIQLTTYILWWL*KTRNAWILQNTLKPEKATVVVAHNEWLEY 68
               + L + I W + K R  ++ Q+       T+  A N  LE+
Sbjct: 302 REAVLTLISTICWAIWKERCHFVYQHREVSPPFTIRAARNLALEF 346


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1750

 Score = 58.5 bits (140), Expect(2) = 1e-07
 Identities = 30/95 (31%), Positives = 48/95 (50%)
 Frame = -2

Query: 653  IGKSRDMDPLFWYFNKSGIYSVNSEYALLSSDKLNKLFPESSWQHQHNKLIICKRSWKIR 474
            + KS+  D + W +N +G Y+V S Y LL+ D    +    +    H  + +  R W + 
Sbjct: 1376 LAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNI---PAINPPHGSIDLKTRIWNLP 1432

Query: 473  IKDKLRTFIWKCFSGILPFNDLLISRGMNVRPSLP 369
            I  KL+ F+W+  S  L   + L +RGM + PS P
Sbjct: 1433 IMPKLKHFLWRALSQALATTERLTTRGMRIDPSCP 1467



 Score = 23.5 bits (49), Expect(2) = 1e-07
 Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 10/117 (8%)
 Frame = -3

Query: 385  LDPLCHICGEVAETMEYLFFFCKRA----------LIV*KMAPLDLEGLHDKQLNFCSWW 236
            +DP C  C    E++ +  F C  A          LI  ++   D E      LNF    
Sbjct: 1462 IDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNF---- 1517

Query: 235  LQICKLDNSKKYNDRIQLTTYILWWL*KTRNAWILQNTLKPEKATVVVAHNEWLEYL 65
            +Q   + +  K      L  +++W + K RN  +     +    TV+ A  E  ++L
Sbjct: 1518 VQDTTMSDFHKL-----LPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWL 1569


>ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis thaliana]
           gi|6682231|gb|AAF23283.1|AC016661_8 putative non-LTR
           reverse transcriptase [Arabidopsis thaliana]
           gi|332641254|gb|AEE74775.1| RNase H domain-containing
           protein [Arabidopsis thaliana]
          Length = 484

 Score = 58.5 bits (140), Expect(2) = 1e-07
 Identities = 30/95 (31%), Positives = 48/95 (50%)
 Frame = -2

Query: 653 IGKSRDMDPLFWYFNKSGIYSVNSEYALLSSDKLNKLFPESSWQHQHNKLIICKRSWKIR 474
           + KS+  D + W +N +G Y+V S Y LL+ D    +    +    H  + +  R W + 
Sbjct: 110 LAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNI---PAINPPHGSIDLKTRIWNLP 166

Query: 473 IKDKLRTFIWKCFSGILPFNDLLISRGMNVRPSLP 369
           I  KL+ F+W+  S  L   + L +RGM + PS P
Sbjct: 167 IMPKLKHFLWRALSQALATTERLTTRGMRIDPSCP 201



 Score = 23.5 bits (49), Expect(2) = 1e-07
 Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 10/117 (8%)
 Frame = -3

Query: 385 LDPLCHICGEVAETMEYLFFFCKRA----------LIV*KMAPLDLEGLHDKQLNFCSWW 236
           +DP C  C    E++ +  F C  A          LI  ++   D E      LNF    
Sbjct: 196 IDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNF---- 251

Query: 235 LQICKLDNSKKYNDRIQLTTYILWWL*KTRNAWILQNTLKPEKATVVVAHNEWLEYL 65
           +Q   + +  K      L  +++W + K RN  +     +    TV+ A  E  ++L
Sbjct: 252 VQDTTMSDFHKL-----LPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWL 303


>gb|EMJ07893.1| hypothetical protein PRUPE_ppa024911mg [Prunus persica]
          Length = 378

 Score = 41.2 bits (95), Expect(2) = 1e-07
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
 Frame = -3

Query: 373 CHICGEVAETMEYLFFFCKRALIV*KMAP--LDLEGLHDKQLNFCSWWLQICKLDNSKKY 200
           C +CG   +T  +LFF C+ A +    +P  LD+ G+  +    C W   + K    +K 
Sbjct: 250 CLLCGNNGKTEVHLFFRCEIARLFWFASPSHLDVHGVEGEDFLSC-WECLLQKFAQVEKM 308

Query: 199 NDRIQLTTYILWWL*KTRNAWILQ-NTLKP---EKATVVVAHNEWLEYLQ 62
           ++ +Q+  + LW + K RNA + +  +L P    +    V   EW E L+
Sbjct: 309 DEILQIVAFGLWRIWKWRNAVVFERQSLDPMDLGRGVGWVIRTEWGELLR 358



 Score = 40.8 bits (94), Expect(2) = 1e-07
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
 Frame = -2

Query: 620 WYFNKSGIYSVNSEYALLSSDKLNKLFPESS---WQHQHNKLIICKRSWKIRIKDKLRTF 450
           W+F K G Y+V S Y L    + N +  +       +Q  +    K  W +++  K++ F
Sbjct: 165 WHFTKYGGYTVKSGYDLAIKLRRNGVIGKKGKGECSNQSGQSGPWKHIWALQVPPKIQMF 224

Query: 449 IWKCFSGILPFNDLLISRGMNV 384
           IW+C+  +L   + L  R ++V
Sbjct: 225 IWRCYRNVLAVRENLRRRRVDV 246


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1524

 Score = 56.2 bits (134), Expect(2) = 2e-07
 Identities = 29/95 (30%), Positives = 47/95 (49%)
 Frame = -2

Query: 653  IGKSRDMDPLFWYFNKSGIYSVNSEYALLSSDKLNKLFPESSWQHQHNKLIICKRSWKIR 474
            + KS+  D + W +N +G Y+V S Y LL+ D    +    +    H  + +  R W + 
Sbjct: 1150 LAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNI---PAINPPHGSIDLKTRIWNLP 1206

Query: 473  IKDKLRTFIWKCFSGILPFNDLLISRGMNVRPSLP 369
            I  KL+ F+W+  S  L   + L +RGM + P  P
Sbjct: 1207 IMPKLKHFLWRALSQALATTERLTTRGMRIDPICP 1241



 Score = 25.0 bits (53), Expect(2) = 2e-07
 Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 10/117 (8%)
 Frame = -3

Query: 385  LDPLCHICGEVAETMEYLFFFCKRA----------LIV*KMAPLDLEGLHDKQLNFCSWW 236
            +DP+C  C    E++ +  F C  A          LI  ++   D E      LNF    
Sbjct: 1236 IDPICPRCHRENESINHALFTCPFATMAWWLSDSSLIRNQLMSNDFEENISNILNF---- 1291

Query: 235  LQICKLDNSKKYNDRIQLTTYILWWL*KTRNAWILQNTLKPEKATVVVAHNEWLEYL 65
            +Q   + +  K      L  +++W + K RN  +     +    TV+ A  E  ++L
Sbjct: 1292 VQDTTMSDFHKL-----LPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWL 1343


>gb|AAG51754.1|AC068667_33 reverse transcriptase, putative; 100033-105622 [Arabidopsis thaliana]
          Length = 1557

 Score = 51.2 bits (121), Expect(2) = 3e-07
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
 Frame = -2

Query: 638  DMDPLF-WYFNKSGIYSVNSEYALLSSDKLNKLFPESSWQHQHNKLIICKRSWKIRIKDK 462
            DMD  + W  +KSG YSV S Y L+      +L  ++  Q   N L   ++ W      K
Sbjct: 1271 DMDDFWVWLHSKSGEYSVKSGYWLVFQSNKPELLFKACRQPSTNGLK--EKIWSTSTFPK 1328

Query: 461  LRTFIWKCFSGILPFNDLLISRGMNVRP 378
            ++ F+W+  S  LP  D ++ RGMNV P
Sbjct: 1329 IKLFLWRILSAALPVADQILRRGMNVDP 1356



 Score = 29.6 bits (65), Expect(2) = 3e-07
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 385  LDPLCHICGEVAETMEYLFFFCKRA 311
            +DP C ICG+  E++ ++ F C  A
Sbjct: 1354 VDPCCQICGQEGESINHVLFTCSVA 1378


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
            (fragment)
          Length = 1365

 Score = 52.0 bits (123), Expect(2) = 3e-07
 Identities = 25/81 (30%), Positives = 41/81 (50%)
 Frame = -2

Query: 632  DPLFWYFNKSGIYSVNSEYALLSSDKLNKLFPESSWQHQHNKLIICKRSWKIRIKDKLRT 453
            D   W  + +G+YSV + Y  LS    ++L+ E+  +   N L    + W +    K+R 
Sbjct: 999  DSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLF--DKIWNLHTAPKIRI 1056

Query: 452  FIWKCFSGILPFNDLLISRGM 390
            F+WK   G +P  D L +RG+
Sbjct: 1057 FLWKALHGAIPVEDRLRTRGI 1077



 Score = 28.9 bits (63), Expect(2) = 3e-07
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 9/111 (8%)
 Frame = -3

Query: 382  DPLCHICGEVAETMEYLFFFCKRALIV*KMAPLDLEGLHDKQLNFCSWWLQICKLDNSKK 203
            D  C +C    ET+ ++ F C  A  V  +  L   G         S +  + +L +  +
Sbjct: 1080 DDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEFSN----SVYTNMSRLIDLTQ 1135

Query: 202  YNDRIQ----LTTYILWWL*KTRNAWILQNTLKPEKATVVV-----AHNEW 77
             ND       ++ +ILW+L K RNA + +   K    T +V     A++EW
Sbjct: 1136 QNDLPHHLRFVSPWILWFLWKNRNALLFEG--KGSITTTLVDKAYEAYHEW 1184


>ref|XP_004301837.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 420

 Score = 51.6 bits (122), Expect(2) = 5e-07
 Identities = 26/71 (36%), Positives = 39/71 (54%)
 Frame = -2

Query: 632 DPLFWYFNKSGIYSVNSEYALLSSDKLNKLFPESSWQHQHNKLIICKRSWKIRIKDKLRT 453
           D L W+F+K G+YSV S Y L      ++    SS     NK    K+ WK+R+  K+++
Sbjct: 107 DRLIWHFDKHGLYSVRSGYHLAGGVNADQSRGSSSSPAGSNKT--WKQVWKVRVLPKVKS 164

Query: 452 FIWKCFSGILP 420
           F+W+    ILP
Sbjct: 165 FVWRLMRNILP 175



 Score = 28.5 bits (62), Expect(2) = 5e-07
 Identities = 22/89 (24%), Positives = 38/89 (42%)
 Frame = -3

Query: 388 MLDPLCHICGEVAETMEYLFFFCKRALIV*KMAPLDLEGLHDKQLNFCSWWLQICKLDNS 209
           M + LC  C    ET  +LF  C  A  +  ++PL L   +    N   W + +  +  +
Sbjct: 186 MEEQLCPFCRTENETALHLFKECSGAACMLIISPLGLRARNHGANNMEEWVVGMMDVLTT 245

Query: 208 KKYNDRIQLTTYILWWL*KTRNAWILQNT 122
                ++++   +LW L   RN  + Q T
Sbjct: 246 ----GQVEMFFMLLWALWVERNNMVWQGT 270


>emb|CAB75484.1| putative protein [Arabidopsis thaliana]
          Length = 851

 Score = 58.5 bits (140), Expect = 2e-06
 Identities = 30/91 (32%), Positives = 45/91 (49%)
 Frame = -2

Query: 632 DPLFWYFNKSGIYSVNSEYALLSSDKLNKLFPESSWQHQHNKLIICKRSWKIRIKDKLRT 453
           D L W +N +G Y+V S Y L + D  N +    +    H  + +  + W + I  KL+ 
Sbjct: 622 DRLIWSYNSTGDYTVRSGYWLSTHDPSNTI---PTMAKPHGSVDLKTKIWNLPIMPKLKH 678

Query: 452 FIWKCFSGILPFNDLLISRGMNVRPSLPHLR 360
           F+W+  S  LP  D L +RGM + P  P  R
Sbjct: 679 FLWRILSKALPTTDRLTTRGMRIDPGCPRCR 709


>ref|XP_006491472.1| PREDICTED: uncharacterized protein LOC102626455 [Citrus sinensis]
          Length = 1452

 Score = 47.0 bits (110), Expect(2) = 2e-06
 Identities = 25/82 (30%), Positives = 43/82 (52%)
 Frame = -2

Query: 641  RDMDPLFWYFNKSGIYSVNSEYALLSSDKLNKLFPESSWQHQHNKLIICKRSWKIRIKDK 462
            ++ D + W+F+K G YSV S Y L     LN+ FP    +  ++   + K  W + + +K
Sbjct: 1090 KEEDEVLWHFDKKGEYSVKSGYQL----ALNQNFPNEP-ESSNSSSRLWKIPWMLDLPEK 1144

Query: 461  LRTFIWKCFSGILPFNDLLISR 396
            ++ F+W+    ILP  + L  R
Sbjct: 1145 VKIFMWRALKNILPTAENLWKR 1166



 Score = 30.8 bits (68), Expect(2) = 2e-06
 Identities = 22/98 (22%), Positives = 41/98 (41%)
 Frame = -3

Query: 421  PLTTCLFLEE*MLDPLCHICGEVAETMEYLFFFCKRALIV*KMAPLDLEGLHDKQLNFCS 242
            P    L+    + +P+C  C    ET+ ++   CK A  +  +APL ++   D   +F S
Sbjct: 1158 PTAENLWKRRSLQEPICQRCKLQVETVSHVLIECKAARKIWDLAPLIVQPSKDHNQDFFS 1217

Query: 241  WWLQICKLDNSKKYNDRIQLTTYILWWL*KTRNAWILQ 128
               ++     S+      +L     W +   RN +I +
Sbjct: 1218 AIQEMW----SRSSTAEAELMIVYCWVIWSARNKFIFE 1251


>ref|XP_006483194.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
           sinensis]
          Length = 765

 Score = 47.0 bits (110), Expect(2) = 2e-06
 Identities = 25/82 (30%), Positives = 43/82 (52%)
 Frame = -2

Query: 641 RDMDPLFWYFNKSGIYSVNSEYALLSSDKLNKLFPESSWQHQHNKLIICKRSWKIRIKDK 462
           ++ D + W+F+K G YSV S Y L     LN+ FP    +  ++   + K  W + + +K
Sbjct: 403 KEEDEVLWHFDKKGEYSVKSGYQL----ALNQNFPNEP-ESSNSSSRLWKIPWMLDLPEK 457

Query: 461 LRTFIWKCFSGILPFNDLLISR 396
           ++ F+W+    ILP  + L  R
Sbjct: 458 VKIFMWRALKNILPTAENLWKR 479



 Score = 30.8 bits (68), Expect(2) = 2e-06
 Identities = 22/98 (22%), Positives = 41/98 (41%)
 Frame = -3

Query: 421 PLTTCLFLEE*MLDPLCHICGEVAETMEYLFFFCKRALIV*KMAPLDLEGLHDKQLNFCS 242
           P    L+    + +P+C  C    ET+ ++   CK A  +  +APL ++   D   +F S
Sbjct: 471 PTAENLWKRRSLQEPICQRCKLQVETVSHVLIECKAARKIWDLAPLIVQPSKDHNQDFFS 530

Query: 241 WWLQICKLDNSKKYNDRIQLTTYILWWL*KTRNAWILQ 128
              ++     S+      +L     W +   RN +I +
Sbjct: 531 AIQEMW----SRSSTAEAELMIVYCWVIWSARNKFIFE 564


>ref|XP_002521812.1| conserved hypothetical protein [Ricinus communis]
           gi|223539025|gb|EEF40622.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 315

 Score = 48.5 bits (114), Expect(2) = 2e-06
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
 Frame = -2

Query: 635 MDPLFWYFNKSGIYSVNSEY-ALLSSDKLNKLFPESSWQHQHNKLIICKRSWKIRIKDKL 459
           +D L W+++ S  YSV S Y A +  +++      S+ Q     L  CK  WK++I +K+
Sbjct: 126 IDRLKWHYHNSSRYSVGSGYFAWVHRERIGH---HSNLQEATAVLHHCKNLWKMKIPNKI 182

Query: 458 RTFIWKCFSGILPFNDLLISR 396
           + FIWK FS  LP      SR
Sbjct: 183 KIFIWKLFSIALPVGSSSASR 203



 Score = 29.3 bits (64), Expect(2) = 2e-06
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
 Frame = -3

Query: 382 DPLCHICGEVAETMEYLFFFCKRALIV*KMAPLDLEGLHDKQLNFCSWWLQICKLDNSKK 203
           D  C  CG     M +LFF C  +  V  ++PL L        +    W +I     +  
Sbjct: 207 DGSCIWCGAWKSRM-HLFFLCPFSQHVWSLSPLRLLPSVFHLSDISLVWEKILLDIQTLS 265

Query: 202 YNDRI-QLTTYILWWL*KTRNAWILQNTLKPEK 107
            ND +     +ILW + K RNA +  N    E+
Sbjct: 266 SNDHLPSCPAFILWHIWKARNASVFDNRWTSEQ 298


>ref|XP_006577420.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
           max]
          Length = 597

 Score = 40.8 bits (94), Expect(2) = 4e-06
 Identities = 25/84 (29%), Positives = 38/84 (45%)
 Frame = -2

Query: 632 DPLFWYFNKSGIYSVNSEYALLSSDKLNKLFPESSWQHQHNKLIICKRSWKIRIKDKLRT 453
           D + W  + SG+Y+  S Y LL       + P S    +    ++    W ++I  K   
Sbjct: 308 DVMLWKADPSGVYTTKSAYNLL-------ITPSSPALDRRTSQLL----WNMKIPPKHAV 356

Query: 452 FIWKCFSGILPFNDLLISRGMNVR 381
           F WK  SG LP    L  RG+N++
Sbjct: 357 FTWKFLSGRLPTRANLSRRGVNIQ 380



 Score = 36.2 bits (82), Expect(2) = 4e-06
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
 Frame = -3

Query: 382 DPLCHICGEVAETMEYLFFFCKRALIV*KMAPLDLEGLHDKQLNFCSWWLQICKLDNSKK 203
           D  C +CG+V E + +LFF CK+ L +   +   ++ +    ++    +LQ C    +++
Sbjct: 381 DTACPLCGDVQEEVGHLFFNCKKILGLWWESMSWIQAMGPLSVSPVDHFLQFCDGFGAER 440

Query: 202 YNDRIQLTTYILWWL*KTRNAW------ILQN-TLKPEKATVVVAHNEWLEYLQF 59
            +     +T   WW+  T   W      I QN   KP+K       + W   L F
Sbjct: 441 NH-----STCCGWWVALTSTIWKHRNFLIFQNKPFKPQKVMEDAMFSIWRGSLGF 490


>gb|AAF18538.1|AC006551_24 Very similar to retrotransposon reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score = 57.0 bits (136), Expect = 5e-06
 Identities = 31/79 (39%), Positives = 44/79 (55%)
 Frame = -2

Query: 620  WYFNKSGIYSVNSEYALLSSDKLNKLFPESSWQHQHNKLIICKRSWKIRIKDKLRTFIWK 441
            W  NKSG YSV   Y L S+  L ++  E+  Q   N L    + WK++ + K++ F+WK
Sbjct: 852  WKHNKSGDYSVKLGYWLASNQNLGQVAIEAMMQPSLNDLKT--QVWKLQTEPKIKVFLWK 909

Query: 440  CFSGILPFNDLLISRGMNV 384
              SG +P  DLL  RGM +
Sbjct: 910  VLSGAIPVVDLLSYRGMKL 928


>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
            thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
            reverse transcriptase [Arabidopsis thaliana]
          Length = 1333

 Score = 45.1 bits (105), Expect(2) = 5e-06
 Identities = 27/81 (33%), Positives = 38/81 (46%)
 Frame = -2

Query: 620  WYFNKSGIYSVNSEYALLSSDKLNKLFPESSWQHQHNKLIICKRSWKIRIKDKLRTFIWK 441
            W  +KSG YSV S Y L       +L  E+  Q   N L   ++ W      K++ F+W+
Sbjct: 1006 WLHSKSGEYSVKSGYWLAFQTNKPELIREARVQPSTNGLK--EKIWSTLTSPKIKLFLWR 1063

Query: 440  CFSGILPFNDLLISRGMNVRP 378
              S  LP    +I RGM + P
Sbjct: 1064 ILSSALPVAYQIIRRGMPIDP 1084



 Score = 31.6 bits (70), Expect(2) = 5e-06
 Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = -3

Query: 385  LDPLCHICGEVAETMEYLFFFCKRALIV*KMAPLDLEGLHDKQLNFCSWWLQICKLDNSK 206
            +DP C +CGE  E++ ++ F C  A  V  ++ +       +  +  +    + +L    
Sbjct: 1082 IDPRCQVCGEEGESINHVLFTCSLARQVWALSGVPTSQFGFQNSSIFANIQYLLELKGKG 1141

Query: 205  KYNDRIQLT-TYILWWL*KTRNAWILQNTL 119
               ++I+ +  ++LW L K R+    + T+
Sbjct: 1142 LIPEQIKKSWPWVLWRLWKNRDKLFFEGTI 1171


>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1225

 Score = 40.4 bits (93), Expect(2) = 5e-06
 Identities = 27/88 (30%), Positives = 40/88 (45%)
 Frame = -2

Query: 632  DPLFWYFNKSGIYSVNSEYALLSSDKLNKLFPESSWQHQHNKLIICKRSWKIRIKDKLRT 453
            D   W F KSG Y+V S Y   ++  L++   +  +Q      +  +  WKI+   K + 
Sbjct: 881  DDFSWSFTKSGNYTVKSGY--WAARDLSRPTCDLPFQGPSVSALQAQ-VWKIKTTRKFKH 937

Query: 452  FIWKCFSGILPFNDLLISRGMNVRPSLP 369
            F W+C SG L  N  L SR +      P
Sbjct: 938  FEWQCLSGCLATNQRLFSRHIGTEKVCP 965



 Score = 36.2 bits (82), Expect(2) = 5e-06
 Identities = 21/102 (20%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
 Frame = -3

Query: 382  DPLCHICGEVAETMEYLFFFCKRALIV*KMAPL-DLEGLHDKQLNFCSWWLQICKLDNSK 206
            + +C  CG   E++ +L F C  +  +  ++P+   E +  +   F ++   + +     
Sbjct: 961  EKVCPRCGAEEESINHLLFLCPPSRQIWALSPIPSSEYIFPRNSLFYNFDFLLSRGKEFD 1020

Query: 205  KYNDRIQLTTYILWWL*KTRNAWILQNTLKPEKATVVVAHNE 80
               D +++  +ILW++ K+RN +I +N ++  +  +  A  E
Sbjct: 1021 IAEDIMEIFPWILWYIWKSRNRFIFENVIESPQVILDFAIQE 1062


>gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1138

 Score = 45.1 bits (105), Expect(2) = 6e-06
 Identities = 25/81 (30%), Positives = 39/81 (48%)
 Frame = -2

Query: 620  WYFNKSGIYSVNSEYALLSSDKLNKLFPESSWQHQHNKLIICKRSWKIRIKDKLRTFIWK 441
            W   K+G YSV S Y L        L  +++     N L   ++ W  +   K++ F+W+
Sbjct: 780  WLHAKTGEYSVKSGYWLAFQSNKLDLIQQANLLPSTNGLK--EQVWSTKSSPKIKMFLWR 837

Query: 440  CFSGILPFNDLLISRGMNVRP 378
              S  LP  D +I RGM++ P
Sbjct: 838  ILSAALPVADQIIRRGMSIDP 858



 Score = 31.2 bits (69), Expect(2) = 6e-06
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
 Frame = -3

Query: 385  LDPLCHICGEVAETMEYLFFFCKRALIV*KMAPLDLEGLHDKQLNF--CSWWLQICKLDN 212
            +DP C ICG+  E+  ++ F C  A  V       L G+   +  F   S +  I  L  
Sbjct: 856  IDPRCQICGDEGESTNHVLFTCSMARQV-----WALSGVPTPEFGFQNASIFANIQFLFE 910

Query: 211  SKK---YNDRIQLT-TYILWWL*KTRNAWILQNTLKPEKATVVVAHNEWLEYLQ 62
             KK     D ++ +  ++LW L K RN             ++V    + LE+ Q
Sbjct: 911  LKKMILVPDLVKRSWPWVLWRLWKNRNKLFFDGITFCPLNSIVKIQEDTLEWFQ 964


>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1094

 Score = 49.3 bits (116), Expect(2) = 8e-06
 Identities = 25/81 (30%), Positives = 39/81 (48%)
 Frame = -2

Query: 632 DPLFWYFNKSGIYSVNSEYALLSSDKLNKLFPESSWQHQHNKLIICKRSWKIRIKDKLRT 453
           D   W+    G+Y+V SEY L S     ++F E+  Q   N L    + W +    K++ 
Sbjct: 729 DSFCWFGTNHGLYTVKSEYDLCSRQVHKQMFKEAEEQPSLNPLF--GKIWNLNSAPKIKV 786

Query: 452 FIWKCFSGILPFNDLLISRGM 390
           F+WK   G +   D L +RG+
Sbjct: 787 FLWKVLKGAVAVEDRLRTRGV 807



 Score = 26.6 bits (57), Expect(2) = 8e-06
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
 Frame = -3

Query: 388  MLDPLCHICGEVAETMEYLFFFCKRALIV*KMAPLDL--EGLHDKQLNFCSWWLQICKLD 215
            +++  C +C E  ET+ ++ F C  A  V  + P+     G  D      +  +  C   
Sbjct: 808  LIEDGCSMCPEKNETLNHILFQCPLARQVWALTPMQSPNHGFGDSIFTNVNHVIGNC--H 865

Query: 214  NSKKYNDRIQLTTYILWWL*KTRNAWILQNTLKPEKATVVVAHNEWLEYLQ 62
            N++       ++ +I+W L K RN  + +       + V  A  +  E+L+
Sbjct: 866  NTELSPHLRYVSPWIIWILWKNRNKRLFEGIGSVSLSIVGKALEDCKEWLK 916