BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00028655
         (826 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme...   210   4e-52
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme...   205   1e-50
emb|CBI28010.3| unnamed protein product [Vitis vinifera]              197   3e-48
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   197   3e-48
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu...   194   3e-47
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu...   194   3e-47
gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus no...   182   1e-43
emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]   181   2e-43
gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus pe...   175   2e-41
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme...   174   3e-41
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme...   174   3e-41
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr...   170   6e-40
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr...   170   6e-40
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu...   169   1e-39
ref|XP_002336131.1| hypothetical protein POPTRDRAFT_584507 [Popu...   169   1e-39
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme...   167   3e-39
ref|XP_002310028.1| hypothetical protein POPTRDRAFT_654879 [Popu...   167   4e-39
gb|EOY15730.1| RNA-dependent RNA polymerase family protein, puta...   166   7e-39
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid...   165   2e-38
gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]            165   2e-38

>ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            lycopersicum]
          Length = 1011

 Score =  210 bits (535), Expect = 4e-52
 Identities = 105/196 (53%), Positives = 139/196 (70%), Gaps = 1/196 (0%)
 Frame = +3

Query: 3    DIYYDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAV 182
            DIYYDALDAPKSGKKV +P  LKA  +PHYME+    SYHS+SILGQIYD V +Y +E +
Sbjct: 817  DIYYDALDAPKSGKKVSIPHYLKANKFPHYMEKGNSCSYHSTSILGQIYDHVDSYPDEDL 876

Query: 183  LQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLL 362
               E+ KL CF++ IP+  + +W+ RYE Y+K+M  A+    E +  + NEVIKKYK LL
Sbjct: 877  CITEISKLPCFEVEIPQRCMTLWRGRYEEYKKDMTRAMNFDCELRITSCNEVIKKYKMLL 936

Query: 363  YEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMI-HGVEKCSFAWRVAGSALCNLCAWRIA 539
            Y A + E++ + T+ I++EA+AIYHV Y+ A I + +EKC FAW+VAGSALC + A    
Sbjct: 937  YGAVEFEQTVRKTEDIFDEALAIYHVTYDNARITYSIEKCGFAWKVAGSALCRIHAMY-- 994

Query: 540  GPKEKPLTILPSVLRD 587
              KEK L ILPSVL++
Sbjct: 995  -RKEKDLPILPSVLQE 1009


>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            tuberosum]
          Length = 1110

 Score =  205 bits (522), Expect = 1e-50
 Identities = 104/195 (53%), Positives = 141/195 (72%), Gaps = 2/195 (1%)
 Frame = +3

Query: 3    DIYYDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAV 182
            D+YYDA+DAPKSG KV +P+ LK + +PH++++    SYHS+S+LG+IYDRV  +K E  
Sbjct: 905  DLYYDAIDAPKSGNKVYIPKRLKVDKFPHFLQKKE--SYHSTSVLGEIYDRVEKFKAEEP 962

Query: 183  LQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLL 362
               E+ KLS F++ IP+  + +W+ RY +YR EMKEAL +  ESKND A++VIKKYKQLL
Sbjct: 963  AAVEIKKLSAFEVGIPDTCLRLWEERYRNYRFEMKEALNTSSESKNDLADQVIKKYKQLL 1022

Query: 363  YEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG-VEKCSFAWRVAGSALCNLCAWRIA 539
            YEAPDMEES ++T  +Y +A+AIY V Y+YA   G V KC FAW+VAG+ALC L A   A
Sbjct: 1023 YEAPDMEESIRSTTDMYNDALAIYCVTYDYAKAIGDVRKCGFAWKVAGAALCKLHAELHA 1082

Query: 540  GP-KEKPLTILPSVL 581
                +K + + PS+L
Sbjct: 1083 KEHNQKVMAMSPSIL 1097


>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  197 bits (502), Expect = 3e-48
 Identities = 105/197 (53%), Positives = 140/197 (71%), Gaps = 3/197 (1%)
 Frame = +3

Query: 3    DIYYDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAV 182
            DIYYDALDAPKSG KV V +ELKAE +PH+M R  + SYHS+SILGQIYD V +++ E  
Sbjct: 735  DIYYDALDAPKSGMKVNVSKELKAEKFPHFMGR--ESSYHSTSILGQIYDAVESFQPENQ 792

Query: 183  LQREVWKLSCFDIP-IPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQL 359
              +E+W+L  F+I  +P+A +  WK RY+ YR EM  AL+ G E+K++ A EVI KYKQ+
Sbjct: 793  STKEIWRLPLFNIDAVPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQI 852

Query: 360  LYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG--VEKCSFAWRVAGSALCNLCAWR 533
            LY A + EES +N + I++EA+AIYHV YE+ +I+G  V  C+F WRVAG ALC L   +
Sbjct: 853  LYGAAEFEESPRNLEDIFDEALAIYHVTYEF-VINGARVSYCNFPWRVAGRALCKLYTVK 911

Query: 534  IAGPKEKPLTILPSVLR 584
            +    EK +  +PSVLR
Sbjct: 912  LG---EKSMVCVPSVLR 925


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
            vinifera]
          Length = 943

 Score =  197 bits (502), Expect = 3e-48
 Identities = 105/197 (53%), Positives = 140/197 (71%), Gaps = 3/197 (1%)
 Frame = +3

Query: 3    DIYYDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAV 182
            DIYYDALDAPKSG KV V +ELKAE +PH+M R  + SYHS+SILGQIYD V +++ E  
Sbjct: 749  DIYYDALDAPKSGMKVNVSKELKAEKFPHFMGR--ESSYHSTSILGQIYDAVESFQPENQ 806

Query: 183  LQREVWKLSCFDIP-IPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQL 359
              +E+W+L  F+I  +P+A +  WK RY+ YR EM  AL+ G E+K++ A EVI KYKQ+
Sbjct: 807  STKEIWRLPLFNIDAVPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQI 866

Query: 360  LYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG--VEKCSFAWRVAGSALCNLCAWR 533
            LY A + EES +N + I++EA+AIYHV YE+ +I+G  V  C+F WRVAG ALC L   +
Sbjct: 867  LYGAAEFEESPRNLEDIFDEALAIYHVTYEF-VINGARVSYCNFPWRVAGRALCKLYTVK 925

Query: 534  IAGPKEKPLTILPSVLR 584
            +    EK +  +PSVLR
Sbjct: 926  LG---EKSMVCVPSVLR 939


>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334280|gb|ERP58267.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 877

 Score =  194 bits (493), Expect = 3e-47
 Identities = 100/196 (51%), Positives = 136/196 (69%), Gaps = 2/196 (1%)
 Frame = +3

Query: 3    DIYYDALDAPKSG-KKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEA 179
            DIYYDALDAPK G ++++VP+ LKAE++PH+M +    +Y S+SILG+IYD+V AY++  
Sbjct: 682  DIYYDALDAPKKGGRRIEVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMD 741

Query: 180  VLQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQL 359
            +   +VWKL CFD  + E Y+  WK  Y  YRKEM+ AL++G+ES ND ANEVI+KYK+ 
Sbjct: 742  LSSNDVWKLPCFDDEVHELYLVKWKELYGQYRKEMRNALKAGEES-NDKANEVIRKYKEF 800

Query: 360  LYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG-VEKCSFAWRVAGSALCNLCAWRI 536
            LYEA +   S +  + I+EEA+A+Y V Y +A   G V  CSFAWRVAG ALC L   + 
Sbjct: 801  LYEAAEFNLSKRRDEEIFEEAMALYQVSYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKN 860

Query: 537  AGPKEKPLTILPSVLR 584
             G  E+P+   PS L+
Sbjct: 861  QG--ERPMICSPSALK 874


>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334279|gb|ERP58266.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 899

 Score =  194 bits (493), Expect = 3e-47
 Identities = 100/196 (51%), Positives = 136/196 (69%), Gaps = 2/196 (1%)
 Frame = +3

Query: 3    DIYYDALDAPKSG-KKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEA 179
            DIYYDALDAPK G ++++VP+ LKAE++PH+M +    +Y S+SILG+IYD+V AY++  
Sbjct: 704  DIYYDALDAPKKGGRRIEVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMD 763

Query: 180  VLQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQL 359
            +   +VWKL CFD  + E Y+  WK  Y  YRKEM+ AL++G+ES ND ANEVI+KYK+ 
Sbjct: 764  LSSNDVWKLPCFDDEVHELYLVKWKELYGQYRKEMRNALKAGEES-NDKANEVIRKYKEF 822

Query: 360  LYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG-VEKCSFAWRVAGSALCNLCAWRI 536
            LYEA +   S +  + I+EEA+A+Y V Y +A   G V  CSFAWRVAG ALC L   + 
Sbjct: 823  LYEAAEFNLSKRRDEEIFEEAMALYQVSYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKN 882

Query: 537  AGPKEKPLTILPSVLR 584
             G  E+P+   PS L+
Sbjct: 883  QG--ERPMICSPSALK 896


>gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus notabilis]
          Length = 521

 Score =  182 bits (463), Expect = 1e-43
 Identities = 103/215 (47%), Positives = 136/215 (63%), Gaps = 20/215 (9%)
 Frame = +3

Query: 3   DIYYDALDAPKSGKK-------------------VKVPQELKAEMYPHYMERWPDLSYHS 125
           DIYYDALDAPK G K                   V+VP+ELK   +PHYME+    S+HS
Sbjct: 309 DIYYDALDAPKQGGKQQDLAKFFEAYAALELSFQVEVPRELKPNRFPHYMEK--QNSFHS 366

Query: 126 SSILGQIYDRVIAYKNEAVLQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESG 305
            SILG IYD V AY+ E    +E++KL  F++ +PEA +  WKA Y+ YR +M +AL + 
Sbjct: 367 RSILGWIYDEVDAYQLEDHSNKEIFKLPHFEVEVPEACLTKWKAHYKDYRDDMCDALLAK 426

Query: 306 DESKNDAANEVIKKYKQLLYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMI-HGVEKCS 482
           D  K +AA EV +KYK+LLY A ++EES+K  + IY EA+AIYHV Y+YA+    V  CS
Sbjct: 427 DVGKTEAAEEVKRKYKRLLYGAEELEESTKKMEEIYNEALAIYHVCYDYAISQRKVSYCS 486

Query: 483 FAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 587
           FAW +AGSAL  L A++  G  E+    LPSVL++
Sbjct: 487 FAWNIAGSALLKLHAFKKIG--ERAFFCLPSVLKE 519


>emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]
          Length = 1202

 Score =  181 bits (460), Expect = 2e-43
 Identities = 100/196 (51%), Positives = 132/196 (67%), Gaps = 2/196 (1%)
 Frame = +3

Query: 3    DIYYDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAV 182
            DIYYDALDAPKSG KV V +ELKAE +PH+M R  + SYHS+SILGQIYD V +++ E  
Sbjct: 1018 DIYYDALDAPKSGMKVNVSKELKAEKFPHFMGR--ESSYHSTSILGQIYDAVESFQPENQ 1075

Query: 183  LQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLL 362
              ++          +P+A +  WK RY+ YR EM  AL+ G E+K++ A EVI KYKQ+L
Sbjct: 1076 STKDA---------VPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQIL 1126

Query: 363  YEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG--VEKCSFAWRVAGSALCNLCAWRI 536
            Y A + EES +  + I++EA+AIYHV YE+A I+G  V  C+F WRVAG ALC L   ++
Sbjct: 1127 YGAAEFEESPRKLEDIFDEALAIYHVTYEFA-INGARVSYCNFPWRVAGRALCKLYTVKL 1185

Query: 537  AGPKEKPLTILPSVLR 584
                EK +  +PSVLR
Sbjct: 1186 G---EKSMVCVPSVLR 1198


>gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus persica]
          Length = 798

 Score =  175 bits (443), Expect = 2e-41
 Identities = 91/174 (52%), Positives = 124/174 (71%), Gaps = 3/174 (1%)
 Frame = +3

Query: 3    DIYYDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAV 182
            D+YY+ALDAPK G KV VP ELK+ ++PHYMER    SY S+SILG IYD V AY+ E  
Sbjct: 604  DLYYEALDAPKKGGKVVVPGELKSNLFPHYMERVN--SYKSTSILGLIYDTVNAYQAEDA 661

Query: 183  LQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGD-ESKNDAANEVIKKYKQL 359
              +EV KL  FD+ +PE  +  W+  Y+ YR EM  A++  D +SKN+AA++V++KYK++
Sbjct: 662  SIKEVKKLPMFDVEVPEECLKKWREHYQHYRSEMSSAMQDDDRDSKNNAADKVLRKYKEI 721

Query: 360  LY-EAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG-VEKCSFAWRVAGSALC 515
            LY  A D+E S++    I++EA+AIY V Y++A+  G V KC FAW+VAGSALC
Sbjct: 722  LYGGAEDLENSTRPLHEIFDEALAIYRVTYDHAISQGAVGKCCFAWKVAGSALC 775


>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
            sativus]
          Length = 1056

 Score =  174 bits (442), Expect = 3e-41
 Identities = 96/196 (48%), Positives = 130/196 (66%), Gaps = 1/196 (0%)
 Frame = +3

Query: 3    DIYYDALDAPKSG-KKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEA 179
            +IYYDALDAPK G KK++VP+ LKA   PH+MER  + SY S+SILGQI+D    Y+ E 
Sbjct: 863  NIYYDALDAPKKGGKKIEVPKHLKAGTLPHFMERGKN-SYVSTSILGQIFDTANMYQEE- 920

Query: 180  VLQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQL 359
            V   EV KL CF+  +PE     WK  YE YRK+M +A++   ++KN AA   IKKYK++
Sbjct: 921  VPNIEVQKLPCFEEELPEYIFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEI 980

Query: 360  LYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHGVEKCSFAWRVAGSALCNLCAWRIA 539
            LY A ++E S ++ + +Y+EA+AIY V Y++AM   V  C FAW+VAGSAL  L A +  
Sbjct: 981  LYGAEELEGSPRSNEEVYQEALAIYQVTYDHAMSRSVRNCGFAWKVAGSALFKLYAIK-- 1038

Query: 540  GPKEKPLTILPSVLRD 587
               E+    LPSV+R+
Sbjct: 1039 -HSERSFHCLPSVMRE 1053


>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
          Length = 988

 Score =  174 bits (441), Expect = 3e-41
 Identities = 99/199 (49%), Positives = 136/199 (68%), Gaps = 4/199 (2%)
 Frame = +3

Query: 3    DIYYDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRV-IAYKNEA 179
            DIYY+ALDAPKSG+KV+VP +L AE++PHYME+  D S+ S+SILG IYD V I  +N+ 
Sbjct: 793  DIYYEALDAPKSGRKVQVPNDLIAELFPHYMEK--DKSFTSTSILGLIYDEVEIWLENDM 850

Query: 180  VLQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGDESK-NDAANEVIKKYKQ 356
            V   E+WKL CFD+ +P + +  WK +YE YRK+M +AL   D+SK ++ A EV +KYK+
Sbjct: 851  V--GEIWKLPCFDVEVPPSCLEKWKTKYEEYRKDMTDALNLKDKSKSHEEAAEVNRKYKE 908

Query: 357  LLY-EAPDMEESSKNTQVIYEEAVAIYHVIYEYAMI-HGVEKCSFAWRVAGSALCNLCAW 530
              Y    +ME   K+   I+ EA+A+Y+V YEYAM+   V++C FAW++AGSAL  L   
Sbjct: 909  EFYGPTLEMEGCLKSIGDIFNEALAVYNVSYEYAMLKKEVKRCGFAWKIAGSALTRL--- 965

Query: 531  RIAGPKEKPLTILPSVLRD 587
             I    EK L   PSV+R+
Sbjct: 966  YIIKQNEKALNCDPSVVRE 984


>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
            gi|568843311|ref|XP_006475557.1| PREDICTED: probable
            RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
            sinensis] gi|557554498|gb|ESR64512.1| hypothetical
            protein CICLE_v10007331mg [Citrus clementina]
          Length = 1013

 Score =  170 bits (430), Expect = 6e-40
 Identities = 93/197 (47%), Positives = 128/197 (64%), Gaps = 2/197 (1%)
 Frame = +3

Query: 3    DIYYDALDAPK-SGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEA 179
            +IYYDALDAPK SG KV+VP++LK E +P YM R   +S+ S+S+LG IY+ V +Y+   
Sbjct: 817  NIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVD 876

Query: 180  VLQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQL 359
                E+WKL CFD  +PEA +  WK  Y+ YR EMKEA++     + +AA  VI+KYKQ+
Sbjct: 877  RSVTEIWKLPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQI 936

Query: 360  LYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMI-HGVEKCSFAWRVAGSALCNLCAWRI 536
            LY A + E+S++  + IY EA+AIY++ Y+ A     V  CSFAWRVAGSAL    A R 
Sbjct: 937  LYGAAEFEQSTRTLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARR- 995

Query: 537  AGPKEKPLTILPSVLRD 587
                ++ +    SVLR+
Sbjct: 996  --QGDRSMLCSASVLRE 1010


>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
            gi|568843309|ref|XP_006475556.1| PREDICTED: probable
            RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
            sinensis] gi|557554497|gb|ESR64511.1| hypothetical
            protein CICLE_v10007331mg [Citrus clementina]
          Length = 1015

 Score =  170 bits (430), Expect = 6e-40
 Identities = 93/197 (47%), Positives = 128/197 (64%), Gaps = 2/197 (1%)
 Frame = +3

Query: 3    DIYYDALDAPK-SGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEA 179
            +IYYDALDAPK SG KV+VP++LK E +P YM R   +S+ S+S+LG IY+ V +Y+   
Sbjct: 819  NIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVD 878

Query: 180  VLQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQL 359
                E+WKL CFD  +PEA +  WK  Y+ YR EMKEA++     + +AA  VI+KYKQ+
Sbjct: 879  RSVTEIWKLPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQI 938

Query: 360  LYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMI-HGVEKCSFAWRVAGSALCNLCAWRI 536
            LY A + E+S++  + IY EA+AIY++ Y+ A     V  CSFAWRVAGSAL    A R 
Sbjct: 939  LYGAAEFEQSTRTLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARR- 997

Query: 537  AGPKEKPLTILPSVLRD 587
                ++ +    SVLR+
Sbjct: 998  --QGDRSMLCSASVLRE 1012


>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
            gi|550336519|gb|ERP59562.1| hypothetical protein
            POPTR_0006s17780g [Populus trichocarpa]
          Length = 866

 Score =  169 bits (427), Expect = 1e-39
 Identities = 93/196 (47%), Positives = 128/196 (65%), Gaps = 2/196 (1%)
 Frame = +3

Query: 3    DIYYDALDAPKSG-KKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEA 179
            DIYYDALDAPK G +K++VP+ LKAE++PH+ME+    +Y S+SILG+IYD+V AY++  
Sbjct: 682  DIYYDALDAPKKGGRKIEVPEALKAELFPHFMEKHEKKTYRSTSILGKIYDKVKAYEDMD 741

Query: 180  VLQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQL 359
            +              + E+ +  WK  Y  YR EM+ AL++G E KN+ ANEVIKKYK++
Sbjct: 742  LSSN-----------VHESCLVKWKGLYGQYRTEMRNALQAGKE-KNNEANEVIKKYKEI 789

Query: 360  LYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG-VEKCSFAWRVAGSALCNLCAWRI 536
            LYEA +   S +  + I+EEA A+Y V Y +A   G V KC FAWRVAG ALC L  + +
Sbjct: 790  LYEAAEFNLSRRRDEEIFEEARALYQVTYNHAKRQGAVGKCGFAWRVAGLALCTL--YVL 847

Query: 537  AGPKEKPLTILPSVLR 584
               +E+PL   PS L+
Sbjct: 848  KNQEERPLICSPSALK 863


>ref|XP_002336131.1| hypothetical protein POPTRDRAFT_584507 [Populus trichocarpa]
          Length = 211

 Score =  169 bits (427), Expect = 1e-39
 Identities = 93/196 (47%), Positives = 128/196 (65%), Gaps = 2/196 (1%)
 Frame = +3

Query: 3   DIYYDALDAPKSG-KKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEA 179
           DIYYDALDAPK G +K++VP+ LKAE++PH+ME+    +Y S+SILG+IYD+V AY++  
Sbjct: 27  DIYYDALDAPKKGGRKIEVPEALKAELFPHFMEKHEKKTYRSTSILGKIYDKVKAYEDMD 86

Query: 180 VLQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQL 359
           +              + E+ +  WK  Y  YR EM+ AL++G E KN+ ANEVIKKYK++
Sbjct: 87  LSSN-----------VHESCLVKWKGLYGQYRTEMRNALQAGKE-KNNEANEVIKKYKEI 134

Query: 360 LYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG-VEKCSFAWRVAGSALCNLCAWRI 536
           LYEA +   S +  + I+EEA A+Y V Y +A   G V KC FAWRVAG ALC L  + +
Sbjct: 135 LYEAAEFNLSRRRDEEIFEEARALYQVTYNHAKRQGAVGKCGFAWRVAGLALCTL--YVL 192

Query: 537 AGPKEKPLTILPSVLR 584
              +E+PL   PS L+
Sbjct: 193 KNQEERPLICSPSALK 208


>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
            vesca subsp. vesca]
          Length = 1405

 Score =  167 bits (424), Expect = 3e-39
 Identities = 97/198 (48%), Positives = 129/198 (65%), Gaps = 3/198 (1%)
 Frame = +3

Query: 3    DIYYDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAV 182
            D+YY ALDA K G KV VP+ELK   +PHYM +  + SY S+SILG IY+RV  ++ E  
Sbjct: 1211 DLYYTALDAAKKGVKVDVPKELKVSCFPHYMGK--NRSYPSTSILGSIYNRVDEHQTEDR 1268

Query: 183  LQREVWKLSCFDI-PIPEAYVNMWKARYESYRKEMKEALESGD-ESKNDAANEVIKKYKQ 356
              +EV KL  FD   +P+A ++ W   +  YRKEM  AL+  D +SKN +A+ VI+KY++
Sbjct: 1269 SLKEVEKLPAFDENEVPDACLDKWAELHRQYRKEMASALDDDDKQSKNQSADVVIRKYRK 1328

Query: 357  LLYEAPDMEESSKNTQVIYEEAVAIYHVIYEYA-MIHGVEKCSFAWRVAGSALCNLCAWR 533
            +LYEA D EES +  + IY EA AIYHV Y++A  +  V+ CSFAWRVAG ALC L A  
Sbjct: 1329 ILYEANDFEESRRPIEEIYNEAHAIYHVCYDHAKRVGNVKVCSFAWRVAGKALCQLHA-- 1386

Query: 534  IAGPKEKPLTILPSVLRD 587
                 E+  TI+ SVL +
Sbjct: 1387 -RNNNERFCTIVSSVLME 1403


>ref|XP_002310028.1| hypothetical protein POPTRDRAFT_654879 [Populus trichocarpa]
          Length = 189

 Score =  167 bits (423), Expect = 4e-39
 Identities = 87/182 (47%), Positives = 122/182 (67%), Gaps = 1/182 (0%)
 Frame = +3

Query: 42  KKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAVLQREVWKLSCFDI 221
           K+++VP+ LKAE++PH+M +    +Y S+SILG+IYD+V AY++  +   +VWKL CFD 
Sbjct: 8   KQIEVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKLPCFDG 67

Query: 222 PIPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYEAPDMEESSKNT 401
            + E+ +  WK  Y  YR EM+ AL++G E KN+ ANEVIKKYK++LYEA +   S +  
Sbjct: 68  EVHESCLVKWKGLYGQYRTEMRNALQAGKE-KNNEANEVIKKYKEILYEAAEFNLSRRRD 126

Query: 402 QVIYEEAVAIYHVIYEYAMIHG-VEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSV 578
           + I+EEA A+Y V Y +A   G V  CSFAWRVAG ALC L   +  G  E+P+   PS 
Sbjct: 127 EEIFEEARALYQVTYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKNQG--ERPMICSPSA 184

Query: 579 LR 584
           L+
Sbjct: 185 LK 186


>gb|EOY15730.1| RNA-dependent RNA polymerase family protein, putative isoform 1
           [Theobroma cacao]
          Length = 328

 Score =  166 bits (421), Expect = 7e-39
 Identities = 92/200 (46%), Positives = 135/200 (67%), Gaps = 5/200 (2%)
 Frame = +3

Query: 3   DIYYDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAV 182
           D+YY++LDAPK+GKK++VP+EL+A+ +PHY+ER    S+ S+SILG+IYD V +Y  E +
Sbjct: 132 DLYYESLDAPKTGKKIEVPRELRADAFPHYLER--QKSFKSASILGKIYDFVKSY-GEEL 188

Query: 183 LQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGD----ESKNDAANEVIKKY 350
            ++EV KL CFD+  P+     W   Y+ YR++M + L++ D    E ++ AAN V  KY
Sbjct: 189 PRKEVRKLPCFDVGFPQDCREKWTELYKQYREDMTQTLQTLDGKSKELRDVAANAVYNKY 248

Query: 351 KQLLYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAM-IHGVEKCSFAWRVAGSALCNLCA 527
           KQ LY    +E+  +    IY+EA+AIY++ Y+YA+ I  V KC FAW+VAGSAL +L A
Sbjct: 249 KQELYGGAVLEQRQRPLDQIYKEALAIYNISYDYAIRIDDVGKCGFAWKVAGSALLSLYA 308

Query: 528 WRIAGPKEKPLTILPSVLRD 587
              +   EK L+  PSVL++
Sbjct: 309 ---SEQGEKTLSCAPSVLKE 325


>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
            gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 3;
            Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
            3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
            polymerase 3 [Arabidopsis thaliana]
          Length = 992

 Score =  165 bits (417), Expect = 2e-38
 Identities = 86/196 (43%), Positives = 129/196 (65%), Gaps = 2/196 (1%)
 Frame = +3

Query: 3    DIYYDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAV 182
            DIYYDALDAPK G KV +P +L+ + +PHYMER P   + S+SILG I+D V ++  E  
Sbjct: 796  DIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEP 855

Query: 183  LQREVWKLSCF-DIPIPEAYVNMWKARYESYRKEMKEALESGDESK-NDAANEVIKKYKQ 356
               E+ KL  F D P+P+++++ + + YE+YR EM +A+   D+ K N   NEVI++YKQ
Sbjct: 856  PPSEISKLWYFEDEPVPKSHMDKFTSWYENYRSEMSQAMMETDKVKRNQLTNEVIQRYKQ 915

Query: 357  LLYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHGVEKCSFAWRVAGSALCNLCAWRI 536
              Y A   E+S+K+ + +Y +A+A+Y+V+Y+YA+  GV KC+FAW VAG  LC    + +
Sbjct: 916  DFYGAAGFEDSNKSLEELYPQALALYNVVYDYAIQEGVAKCTFAWNVAGPVLCK---FYL 972

Query: 537  AGPKEKPLTILPSVLR 584
               K+K +    SVL+
Sbjct: 973  KKTKDKSVVASTSVLK 988


>gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
          Length = 966

 Score =  165 bits (417), Expect = 2e-38
 Identities = 86/196 (43%), Positives = 129/196 (65%), Gaps = 2/196 (1%)
 Frame = +3

Query: 3    DIYYDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAYKNEAV 182
            DIYYDALDAPK G KV +P +L+ + +PHYMER P   + S+SILG I+D V ++  E  
Sbjct: 770  DIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEP 829

Query: 183  LQREVWKLSCF-DIPIPEAYVNMWKARYESYRKEMKEALESGDESK-NDAANEVIKKYKQ 356
               E+ KL  F D P+P+++++ + + YE+YR EM +A+   D+ K N   NEVI++YKQ
Sbjct: 830  PPSEISKLWYFEDEPVPKSHMDKFTSWYENYRSEMSQAMMETDKVKRNQLTNEVIQRYKQ 889

Query: 357  LLYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHGVEKCSFAWRVAGSALCNLCAWRI 536
              Y A   E+S+K+ + +Y +A+A+Y+V+Y+YA+  GV KC+FAW VAG  LC    + +
Sbjct: 890  DFYGAAGFEDSNKSLEELYPQALALYNVVYDYAIQEGVAKCTFAWNVAGPVLCK---FYL 946

Query: 537  AGPKEKPLTILPSVLR 584
               K+K +    SVL+
Sbjct: 947  KKTKDKSVVASTSVLK 962