BLASTX nr result

ID: Rehmannia23_contig00027816 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00027816
         (374 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275052.2| PREDICTED: double-stranded RNA-binding prote...    55   7e-06
emb|CBI21312.3| unnamed protein product [Vitis vinifera]               55   7e-06
emb|CAN71476.1| hypothetical protein VITISV_038619 [Vitis vinifera]    55   7e-06

>ref|XP_002275052.2| PREDICTED: double-stranded RNA-binding protein 5 [Vitis vinifera]
          Length = 484

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 48/135 (35%), Positives = 60/135 (44%), Gaps = 34/135 (25%)
 Frame = +3

Query: 6   SQVKVHEIPPELNER---DHEWISKISEAIIKKNPTEMK-GSNNSSSHFYGGKPVYNPFP 173
           SQVK+ E+P  L E    + EW+   S  I K  PTE +  SN ++S  YG   +Y PFP
Sbjct: 295 SQVKMPEVPTLLEEHQRDEEEWLDGKSNLIRK--PTEKECPSNANASSVYGANSIYRPFP 352

Query: 174 LP------FPLPATDHTCSQ------------------------IGRSTFTGGVYKQISR 263
           LP        LP + H   +                        I R+  TGG       
Sbjct: 353 LPNAGKLNTSLPDSPHQPHEQTHIKNNPFGNPTPSAMKGSAGIHIPRTMGTGGFQ---PH 409

Query: 264 SIAPAVQVRSVIPVC 308
            IAPAVQ+RSVIPVC
Sbjct: 410 RIAPAVQIRSVIPVC 424


>emb|CBI21312.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 48/135 (35%), Positives = 60/135 (44%), Gaps = 34/135 (25%)
 Frame = +3

Query: 6   SQVKVHEIPPELNER---DHEWISKISEAIIKKNPTEMK-GSNNSSSHFYGGKPVYNPFP 173
           SQVK+ E+P  L E    + EW+   S  I K  PTE +  SN ++S  YG   +Y PFP
Sbjct: 292 SQVKMPEVPTLLEEHQRDEEEWLDGKSNLIRK--PTEKECPSNANASSVYGANSIYRPFP 349

Query: 174 LP------FPLPATDHTCSQ------------------------IGRSTFTGGVYKQISR 263
           LP        LP + H   +                        I R+  TGG       
Sbjct: 350 LPNAGKLNTSLPDSPHQPHEQTHIKNNPFGNPTPSAMKGSAGIHIPRTMGTGGFQ---PH 406

Query: 264 SIAPAVQVRSVIPVC 308
            IAPAVQ+RSVIPVC
Sbjct: 407 RIAPAVQIRSVIPVC 421


>emb|CAN71476.1| hypothetical protein VITISV_038619 [Vitis vinifera]
          Length = 552

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 48/135 (35%), Positives = 60/135 (44%), Gaps = 34/135 (25%)
 Frame = +3

Query: 6   SQVKVHEIPPELNER---DHEWISKISEAIIKKNPTEMK-GSNNSSSHFYGGKPVYNPFP 173
           SQVK+ E+P  L E    + EW+   S  I K  PTE +  SN ++S  YG   +Y PFP
Sbjct: 363 SQVKMPEVPTLLEEHQRDEEEWLDGKSNLIRK--PTEKECPSNANASSVYGANSIYRPFP 420

Query: 174 LP------FPLPATDHTCSQ------------------------IGRSTFTGGVYKQISR 263
           LP        LP + H   +                        I R+  TGG       
Sbjct: 421 LPNAGKLNTSLPDSPHQPHEQTHIKNNPFGNPTPSAMKGSAGIHIPRTMGTGGFQ---PH 477

Query: 264 SIAPAVQVRSVIPVC 308
            IAPAVQ+RSVIPVC
Sbjct: 478 RIAPAVQIRSVIPVC 492


Top