BLASTX nr result

ID: Rehmannia23_contig00027737 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00027737
         (348 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAA84682.1| unknown protein (chloroplast) [Nicotiana tabacum]...    77   2e-15
ref|XP_002335728.1| predicted protein [Populus trichocarpa]            69   8e-10
gb|AAA84681.1| unknown protein (chloroplast) [Nicotiana tabacum]...    49   9e-07

>gb|AAA84682.1| unknown protein (chloroplast) [Nicotiana tabacum]
           gi|224352|prf||1102209F ORF 6
          Length = 79

 Score = 77.4 bits (189), Expect(2) = 2e-15
 Identities = 43/71 (60%), Positives = 48/71 (67%), Gaps = 8/71 (11%)
 Frame = +1

Query: 22  MKVDYLSVYFQTSIIPSRTKHESFDSFGSHAQLLRVNSHSFFL*M**AY--------PLF 177
           MKVDY S+ FQ SIIPSRTKHESFDSFGSHAQLL+VNSH FF      Y         LF
Sbjct: 1   MKVDYFSIPFQNSIIPSRTKHESFDSFGSHAQLLKVNSHIFF------YECNEPIFSSLF 54

Query: 178 FFQSPKKTNLM 210
            FQ   +TN++
Sbjct: 55  IFQKDIETNVI 65



 Score = 30.8 bits (68), Expect(2) = 2e-15
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = +3

Query: 201 ESNAKQKYLEDSSDKIKNM 257
           E+N   KY EDSSDKIKNM
Sbjct: 61  ETNVIPKYSEDSSDKIKNM 79


>ref|XP_002335728.1| predicted protein [Populus trichocarpa]
          Length = 79

 Score = 68.6 bits (166), Expect = 8e-10
 Identities = 33/45 (73%), Positives = 40/45 (88%), Gaps = 3/45 (6%)
 Frame = +1

Query: 22  MKVDYLSVYFQTSIIPSRTKHESFDSFGSHAQLLRV---NSHSFF 147
           MKVDYLS++ +TS+IPSRTKHESFDSFGSHAQL+++   NSH FF
Sbjct: 1   MKVDYLSIHCKTSMIPSRTKHESFDSFGSHAQLVQLLMGNSHLFF 45


>gb|AAA84681.1| unknown protein (chloroplast) [Nicotiana tabacum]
           gi|224350|prf||1102209D ORF 4
          Length = 64

 Score = 48.5 bits (114), Expect(2) = 9e-07
 Identities = 23/31 (74%), Positives = 26/31 (83%)
 Frame = -3

Query: 292 EEKKRNNFADNYIFLILSEESSKYFCFALDS 200
           ++KKRNNFADNYIF ILSEESS+YF   L S
Sbjct: 17  KKKKRNNFADNYIFFILSEESSEYFGITLVS 47



 Score = 30.0 bits (66), Expect(2) = 9e-07
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -1

Query: 195 FWTLKKEERIGSLHS 151
           FW + KEE+IGSLHS
Sbjct: 50  FWNMNKEEKIGSLHS 64


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