BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00027632
         (948 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme...   349   8e-94
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme...   318   2e-84
ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polyme...   316   7e-84
emb|CBI28010.3| unnamed protein product [Vitis vinifera]              295   2e-77
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   291   2e-76
gb|ESW24973.1| hypothetical protein PHAVU_004G1764001g, partial ...   290   4e-76
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu...   287   5e-75
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu...   287   5e-75
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr...   285   2e-74
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr...   285   2e-74
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid...   281   3e-73
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ...   280   4e-73
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme...   277   4e-72
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps...   277   5e-72
ref|XP_006408907.1| hypothetical protein EUTSA_v10001896mg [Eutr...   273   9e-71
ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polyme...   273   9e-71
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr...   272   2e-70
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme...   271   3e-70
gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus no...   270   5e-70
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid...   270   5e-70

>ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            tuberosum]
          Length = 911

 Score =  349 bits (896), Expect = 8e-94
 Identities = 182/316 (57%), Positives = 231/316 (73%), Gaps = 1/316 (0%)
 Frame = +1

Query: 1    HIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKILTVKFLEDGAYVTDKIVEEGILVG 180
            HIY CH+ ++G   FKGPYLN+ R HLQR+LGDD +L VKF+ED +   + IVEEGILVG
Sbjct: 237  HIYYCHIKQNGQCTFKGPYLNTARTHLQRALGDDNVLLVKFVEDTS-CANMIVEEGILVG 295

Query: 181  PWRYRFFVFKDERKRVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGNYILSGKRISE 360
              RYRFFV+KD++++ K   M  +K AS   +KCYFVR +S+    D G+Y+ S KRIS+
Sbjct: 296  LRRYRFFVYKDDKEKKKSPAMMKKKTAS---LKCYFVRFESIETCNDGGSYVFSTKRISQ 352

Query: 361  ARCRFMHIYNVSTIEKYMARFSLILSKTIKLEVDLADATVETIEDIPFQDENGSIIHDED 540
            ARC+FMH++ VS + KY AR SLILSKTIKL+V+LA  T+E IEDI  +DENG II DED
Sbjct: 353  ARCQFMHVHMVSNMAKYAARLSLILSKTIKLQVNLASVTIERIEDILCRDENGCIIKDED 412

Query: 541  GKPILHTDGTGYISEDLAMQCPKDFSTAKYIRDNSFE-IVNSGDAACQKRGAEARNKEPP 717
            G+P +HTDGTG+ISEDLAM CPKDF  A+YI+D ++E  V+  D   ++R + + N+EPP
Sbjct: 413  GEPRIHTDGTGFISEDLAMHCPKDFVKAEYIKDENYENFVDIVDLDAERRESVSWNREPP 472

Query: 718  LLMQCRLFHGGYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFNSLEIVNISH 897
            LLMQCRLF  G AVKGT LVN+K+    I IRPSM+KV  D       TF+SLEIV ISH
Sbjct: 473  LLMQCRLFFNGCAVKGTFLVNRKIGSRKIHIRPSMVKVEIDPAISSIPTFDSLEIVAISH 532

Query: 898  RPGRNCFSKYLIALLN 945
            RP +   SK LI+LL+
Sbjct: 533  RPNKAYLSKNLISLLS 548


>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            tuberosum]
          Length = 1110

 Score =  318 bits (814), Expect = 2e-84
 Identities = 169/317 (53%), Positives = 217/317 (68%), Gaps = 3/317 (0%)
 Frame = +1

Query: 1    HIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKILTVKFLEDGAYVTDKIVEEGILVG 180
            H+Y CHV  DGSY FKGPYL + R HLQ+SLGD+ +L VKF ++     ++IV+ GILVG
Sbjct: 319  HLYHCHVHSDGSYTFKGPYLKAERTHLQQSLGDENVLIVKFEQNTPGCPEEIVQNGILVG 378

Query: 181  PWRYRFFVFKDERKRVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGNYILSGKRISE 360
              RYRFFV+KD+ K+    +   +K+    +VKCYFVR++S+ PY  +  YIL  K + E
Sbjct: 379  LRRYRFFVYKDDGKK----RSSKDKEEKIDSVKCYFVRMESLNPYEKE-TYILRDKMVHE 433

Query: 361  ARCRFMHIYNVSTIEKYMARFSLILSKTIKLEVDLADATVETIEDIPFQDENGSIIHDED 540
            ARC FMH++ VS++ KYMARFSL LS T+KL+VDL    ++ IEDI   D++G II+DED
Sbjct: 434  ARCNFMHVHMVSSMAKYMARFSLTLSTTVKLQVDLNSVNIDRIEDICCHDKSGRIIYDED 493

Query: 541  GKPILHTDGTGYISEDLAMQCPKDFSTAKYIRDNSFEIVNS---GDAACQKRGAEARNKE 711
            GKP++HTDGTGYISEDLA +CP+DF   K+   N     N    G+ + +   AE ++ E
Sbjct: 494  GKPLIHTDGTGYISEDLARKCPQDFFNVKHRCANLERYTNGVKLGENSSELGEAEFQSGE 553

Query: 712  PPLLMQCRLFHGGYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFNSLEIVNI 891
            PPLLMQCRLF+ G AVKGTLLVN+KL   TIQIRPSMIKV  D      + FNSLEI   
Sbjct: 554  PPLLMQCRLFYNGLAVKGTLLVNRKLPRRTIQIRPSMIKVEADPRLSRAQMFNSLEINTP 613

Query: 892  SHRPGRNCFSKYLIALL 942
            S +P     S+ LIALL
Sbjct: 614  SLKPRNTYLSRTLIALL 630


>ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            lycopersicum]
          Length = 759

 Score =  316 bits (810), Expect = 7e-84
 Identities = 169/317 (53%), Positives = 216/317 (68%), Gaps = 3/317 (0%)
 Frame = +1

Query: 1    HIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKILTVKFLEDGAYVTDKIVEEGILVG 180
            H+Y CHV  D SY FKGPYL + R HLQ SLGD+ +L VKF ++     ++IV+ GILVG
Sbjct: 263  HLYHCHVHSDRSYTFKGPYLKAERTHLQHSLGDENVLIVKFEQNTPGCPEEIVQNGILVG 322

Query: 181  PWRYRFFVFKDERKRVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGNYILSGKRISE 360
              RYRFFV+KD+ K+    +   +K+    +VKCYFVR++S+ PY ++  YIL  K + E
Sbjct: 323  LRRYRFFVYKDDGKK----RRLKDKEEKIDSVKCYFVRMESLNPYENE-TYILHDKMVHE 377

Query: 361  ARCRFMHIYNVSTIEKYMARFSLILSKTIKLEVDLADATVETIEDIPFQDENGSIIHDED 540
            ARC FMH++ VS++ KYMARFSLILS T+KL+VDL    ++ IEDI   D++G II+DED
Sbjct: 378  ARCNFMHVHMVSSMAKYMARFSLILSTTVKLQVDLNSVNIDRIEDIYCHDKSGRIIYDED 437

Query: 541  GKPILHTDGTGYISEDLAMQCPKDFSTAKYIRDNSFEIVNS---GDAACQKRGAEARNKE 711
            GKP++HTDGTGYISEDLA +CP+DF   K+   N     N    G+ + +   AE ++ E
Sbjct: 438  GKPLIHTDGTGYISEDLARKCPQDFFNVKHKCANLVRYANGVKLGENSSELGEAEFQSGE 497

Query: 712  PPLLMQCRLFHGGYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFNSLEIVNI 891
            PPLLMQCRLF+ G AVKGTLLVN+KL   TIQIRPSMIKV  D        FNSLEI   
Sbjct: 498  PPLLMQCRLFYNGLAVKGTLLVNRKLPQRTIQIRPSMIKVEADPRLSRAHMFNSLEINTP 557

Query: 892  SHRPGRNCFSKYLIALL 942
            S +P     S+ LIALL
Sbjct: 558  SLKPRNTYLSRTLIALL 574


>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  295 bits (755), Expect = 2e-77
 Identities = 170/330 (51%), Positives = 211/330 (63%), Gaps = 15/330 (4%)
 Frame = +1

Query: 1    HIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKILTVKFLEDGAYVTD---------- 150
            HIY CHV  DGSY FKGPYLN TR HLQR LGD+ IL VKF ED   VTD          
Sbjct: 175  HIYHCHVSPDGSYRFKGPYLNKTRTHLQRVLGDENILLVKFAED---VTDRSSLNCSTDS 231

Query: 151  -----KIVEEGILVGPWRYRFFVFKDERKRVKKNKMENEKKASYSAVKCYFVRIDSVVPY 315
                 KI  EGI VG  +YRFFVFKD  K       E +KK   S+VKCYFV ++S    
Sbjct: 232  NASYNKIAREGIFVGLRQYRFFVFKDGGK-------EEKKKNPTSSVKCYFVFMESSA-- 282

Query: 316  GDDGNYILSGKRISEARCRFMHIYNVSTIEKYMARFSLILSKTIKLEVDLADATVETIED 495
                   LSGK + EARC FMH + VS++ KYMARFSLILSKT+KL+VDL+   ++ I+D
Sbjct: 283  -------LSGKTVHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDD 335

Query: 496  IPFQDENGSIIHDEDGKPILHTDGTGYISEDLAMQCPKDFSTAKYIRDNSFEIVNSGDAA 675
             P +DE+G +++DED KP++ TDGTG+ISEDLA++CP +    KY        +N+G++ 
Sbjct: 336  EPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCRGKY--------MNNGNS- 386

Query: 676  CQKRGAEARNKEPPLLMQCRLFHGGYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPM 855
                         PLL+QCRLF+ G AVKGTLL+N+KL P TIQIRPSMIKV  D     
Sbjct: 387  ------------DPLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSD 434

Query: 856  KETFNSLEIVNISHRPGRNCFSKYLIALLN 945
             +T NS+EI   S++P R+  SKYLIALL+
Sbjct: 435  TQTVNSVEINGTSNQPRRSYLSKYLIALLS 464


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
            vinifera]
          Length = 943

 Score =  291 bits (745), Expect = 2e-76
 Identities = 169/338 (50%), Positives = 212/338 (62%), Gaps = 23/338 (6%)
 Frame = +1

Query: 1    HIYCCHVCEDGSYYFK--------GPYLNSTRNHLQRSLGDDKILTVKFLEDGAYVTD-- 150
            HIY CHV  DGSY FK        GPYLN TR HLQR LGD+ IL VKF ED   VTD  
Sbjct: 175  HIYHCHVSPDGSYRFKVCISSSLNGPYLNKTRTHLQRVLGDENILLVKFAED---VTDRS 231

Query: 151  -------------KIVEEGILVGPWRYRFFVFKDERKRVKKNKMENEKKASYSAVKCYFV 291
                         KI  EGI VG  +YRFFVFKD  K       E +KK   S+VKCYFV
Sbjct: 232  SLNCSTDSNASYNKIAREGIFVGLRQYRFFVFKDGGK-------EEKKKNPTSSVKCYFV 284

Query: 292  RIDSVVPYGDDGNYILSGKRISEARCRFMHIYNVSTIEKYMARFSLILSKTIKLEVDLAD 471
             ++S           LSGK + EARC FMH + VS++ KYMARFSLILSKT+KL+VDL+ 
Sbjct: 285  FMESSA---------LSGKTVHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLST 335

Query: 472  ATVETIEDIPFQDENGSIIHDEDGKPILHTDGTGYISEDLAMQCPKDFSTAKYIRDNSFE 651
              ++ I+D P +DE+G +++DED KP++ TDGTG+ISEDLA++CP +    KY+ + + +
Sbjct: 336  VNIQRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCRGKYMNNGNSD 395

Query: 652  IVNSGDAACQKRGAEARNKEPPLLMQCRLFHGGYAVKGTLLVNKKLEPGTIQIRPSMIKV 831
            + +S                 PLL+QCRLF+ G AVKGTLL+N+KL P TIQIRPSMIKV
Sbjct: 396  VCDS---------------RYPLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKV 440

Query: 832  VKDRTSPMKETFNSLEIVNISHRPGRNCFSKYLIALLN 945
              D      +T NS+EI   S++P R+  SKYLIALL+
Sbjct: 441  ETDPKLSDTQTVNSVEINGTSNQPRRSYLSKYLIALLS 478


>gb|ESW24973.1| hypothetical protein PHAVU_004G1764001g, partial [Phaseolus vulgaris]
          Length = 689

 Score =  290 bits (743), Expect = 4e-76
 Identities = 170/333 (51%), Positives = 214/333 (64%), Gaps = 18/333 (5%)
 Frame = +1

Query: 1    HIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKILTVKFLEDG-----------AY-V 144
            H+Y C+V  DGS  FKGP L ST+ HLQRSLGDD +L VKF E+G           AY +
Sbjct: 183  HVYQCYVSSDGSLRFKGPILQSTQTHLQRSLGDDNVLLVKFAENGIANNIRTSAEEAYRL 242

Query: 145  TDKIVEEGILVGPWRYRFFVFKDERKRVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDD 324
              K  +EGI VG   YRFFVFKD  K  KK      K  + S+VKCYFVR+ S       
Sbjct: 243  YGKFGKEGINVGLRLYRFFVFKDGGKEEKK------KDPTSSSVKCYFVRMQSCWSIDGS 296

Query: 325  GNYILSGKRISEARCRFMHIYNVSTIEKYMARFSLILSKTIKLEVDLADATVETIEDIPF 504
             NYILS K +SEAR  FMH + + +++KYMARFSLILSKT KL +DLA   V+TI+D+  
Sbjct: 297  ANYILSNKTVSEARGLFMHAHLLPSLDKYMARFSLILSKTFKLNIDLATVNVQTIQDVYC 356

Query: 505  QDENGSIIHDEDGKPILHTDGTGYISEDLAMQCPKDFSTAKYIRDNSFEIVNS---GDAA 675
            QDENG+II+D + KP + TDGTG+IS DLA+ CP        + +N  + +N+    +  
Sbjct: 357  QDENGNIIYDNE-KPRILTDGTGFISGDLALLCPNSVCKGNNLENNYIQEINNLLELEDM 415

Query: 676  CQKRG---AEARNKEPPLLMQCRLFHGGYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRT 846
            C++ G    +    +PPLL+QCRLFH G A+KGTLLVNKKL P TI +RPSMIKV  D +
Sbjct: 416  CKEMGETELKLTTHQPPLLIQCRLFHMGSAIKGTLLVNKKLPPRTIHVRPSMIKVETDLS 475

Query: 847  SPMKETFNSLEIVNISHRPGRNCFSKYLIALLN 945
              M ++ NSLEIVN S +P R   SK LIALL+
Sbjct: 476  LNM-QSINSLEIVNTSIKPNRTYLSKNLIALLS 507


>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334280|gb|ERP58267.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 877

 Score =  287 bits (734), Expect = 5e-75
 Identities = 166/328 (50%), Positives = 213/328 (64%), Gaps = 13/328 (3%)
 Frame = +1

Query: 1    HIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKILTVKF-------------LEDGAY 141
            HIY CHV  DGSY FKGPYL+  RN LQR+LGDD IL VKF             L+D   
Sbjct: 92   HIYHCHVDPDGSYRFKGPYLSKLRNVLQRTLGDDNILMVKFGEVKDDRDSGSRSLDDYFS 151

Query: 142  VTDKIVEEGILVGPWRYRFFVFKDERKRVKKNKMENEKKASYSAVKCYFVRIDSVVPYGD 321
              +K++ EGI VG   YRFFVFKD  K  KK      K  + S VKC+FVR++SV    +
Sbjct: 152  KYNKVLGEGIHVGLRCYRFFVFKDGGKEEKK------KDPTTSPVKCFFVRMESVASIDN 205

Query: 322  DGNYILSGKRISEARCRFMHIYNVSTIEKYMARFSLILSKTIKLEVDLADATVETIEDIP 501
              N ILSGK I +AR  FMH+ N+S++  YMARFSLILSKT+ LEVDL+   ++TI D P
Sbjct: 206  QDN-ILSGKTIRQARSVFMHVDNLSSLSNYMARFSLILSKTMNLEVDLSCVDIKTIADEP 264

Query: 502  FQDENGSIIHDEDGKPILHTDGTGYISEDLAMQCPKDFSTAKYIRDNSFEIVNSGDAACQ 681
             +D++G++++  DGKP++HTDGTG+IS DLA++CPK+      +R ++ E +N  +   +
Sbjct: 265  CRDKDGNVVYGTDGKPLIHTDGTGFISHDLALKCPKNQFKGTCLRASNIERLNVHNEVME 324

Query: 682  KRGAEARNKEPPLLMQCRLFHGGYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKE 861
            +   E RN +PPLL+Q RLF+ G AVKGT LVNKKL   T+ IRPSMIKV  D       
Sbjct: 325  QY-PECRNGDPPLLIQFRLFNNGRAVKGTFLVNKKLTHQTLHIRPSMIKVETDPKLSSTF 383

Query: 862  TFNSLEIVNISHRPGRNCFSKYLIALLN 945
            + NSLEIV  S RP +   SK LIALL+
Sbjct: 384  SKNSLEIVGTSSRPKKTFLSKNLIALLS 411


>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334279|gb|ERP58266.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 899

 Score =  287 bits (734), Expect = 5e-75
 Identities = 166/328 (50%), Positives = 213/328 (64%), Gaps = 13/328 (3%)
 Frame = +1

Query: 1    HIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKILTVKF-------------LEDGAY 141
            HIY CHV  DGSY FKGPYL+  RN LQR+LGDD IL VKF             L+D   
Sbjct: 114  HIYHCHVDPDGSYRFKGPYLSKLRNVLQRTLGDDNILMVKFGEVKDDRDSGSRSLDDYFS 173

Query: 142  VTDKIVEEGILVGPWRYRFFVFKDERKRVKKNKMENEKKASYSAVKCYFVRIDSVVPYGD 321
              +K++ EGI VG   YRFFVFKD  K  KK      K  + S VKC+FVR++SV    +
Sbjct: 174  KYNKVLGEGIHVGLRCYRFFVFKDGGKEEKK------KDPTTSPVKCFFVRMESVASIDN 227

Query: 322  DGNYILSGKRISEARCRFMHIYNVSTIEKYMARFSLILSKTIKLEVDLADATVETIEDIP 501
              N ILSGK I +AR  FMH+ N+S++  YMARFSLILSKT+ LEVDL+   ++TI D P
Sbjct: 228  QDN-ILSGKTIRQARSVFMHVDNLSSLSNYMARFSLILSKTMNLEVDLSCVDIKTIADEP 286

Query: 502  FQDENGSIIHDEDGKPILHTDGTGYISEDLAMQCPKDFSTAKYIRDNSFEIVNSGDAACQ 681
             +D++G++++  DGKP++HTDGTG+IS DLA++CPK+      +R ++ E +N  +   +
Sbjct: 287  CRDKDGNVVYGTDGKPLIHTDGTGFISHDLALKCPKNQFKGTCLRASNIERLNVHNEVME 346

Query: 682  KRGAEARNKEPPLLMQCRLFHGGYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKE 861
            +   E RN +PPLL+Q RLF+ G AVKGT LVNKKL   T+ IRPSMIKV  D       
Sbjct: 347  QY-PECRNGDPPLLIQFRLFNNGRAVKGTFLVNKKLTHQTLHIRPSMIKVETDPKLSSTF 405

Query: 862  TFNSLEIVNISHRPGRNCFSKYLIALLN 945
            + NSLEIV  S RP +   SK LIALL+
Sbjct: 406  SKNSLEIVGTSSRPKKTFLSKNLIALLS 433


>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
            gi|568843311|ref|XP_006475557.1| PREDICTED: probable
            RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
            sinensis] gi|557554498|gb|ESR64512.1| hypothetical
            protein CICLE_v10007331mg [Citrus clementina]
          Length = 1013

 Score =  285 bits (729), Expect = 2e-74
 Identities = 168/335 (50%), Positives = 208/335 (62%), Gaps = 20/335 (5%)
 Frame = +1

Query: 1    HIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKILTVKFLE------------DGAYV 144
            H+Y CH+   G+  FKGPYLN TR HLQR LGDD IL VKF E            D    
Sbjct: 222  HMYHCHISTKGNCTFKGPYLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSK 281

Query: 145  TDKIVEEGILVGPWRYRFFVFKDERKRVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDD 324
             ++I  EGILVG   Y FFVFKD  K  KK      K  S S VKCYFVR++S       
Sbjct: 282  YNEIAREGILVGLRCYHFFVFKDGGKEEKK------KDPSTSPVKCYFVRMESSAFIDMG 335

Query: 325  GNYILSGKRISEARCRFMHIYNVSTIEKYMARFSLILSKTIKLEVDLADATVETIEDIPF 504
              YILSGK + EAR  FMH+  VS++  YM+R SLILSKT+KLEVD +   +E IED P 
Sbjct: 336  YQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPC 395

Query: 505  QDENGSIIHDEDGKPILHTDGTGYISEDLAMQCPKDFSTAKYIRDNSFE--------IVN 660
            +D++G++++ +DG+ ++HTDGTG+ISEDLA++CP      K   D+S E          N
Sbjct: 396  RDKDGNVVY-KDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEAN 454

Query: 661  SGDAACQKRGAEARNKEPPLLMQCRLFHGGYAVKGTLLVNKKLEPGTIQIRPSMIKVVKD 840
              D A      E+   EPPLLMQ RLF+ G AVKGTLL+NKKL P TIQIRPSMIKV  D
Sbjct: 455  FSDVA----RTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKAD 510

Query: 841  RTSPMKETFNSLEIVNISHRPGRNCFSKYLIALLN 945
            R     +TFNSLE+V  S++P +   S+ LIALL+
Sbjct: 511  RDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLS 545


>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
            gi|568843309|ref|XP_006475556.1| PREDICTED: probable
            RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
            sinensis] gi|557554497|gb|ESR64511.1| hypothetical
            protein CICLE_v10007331mg [Citrus clementina]
          Length = 1015

 Score =  285 bits (729), Expect = 2e-74
 Identities = 168/335 (50%), Positives = 208/335 (62%), Gaps = 20/335 (5%)
 Frame = +1

Query: 1    HIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKILTVKFLE------------DGAYV 144
            H+Y CH+   G+  FKGPYLN TR HLQR LGDD IL VKF E            D    
Sbjct: 224  HMYHCHISTKGNCTFKGPYLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSK 283

Query: 145  TDKIVEEGILVGPWRYRFFVFKDERKRVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDD 324
             ++I  EGILVG   Y FFVFKD  K  KK      K  S S VKCYFVR++S       
Sbjct: 284  YNEIAREGILVGLRCYHFFVFKDGGKEEKK------KDPSTSPVKCYFVRMESSAFIDMG 337

Query: 325  GNYILSGKRISEARCRFMHIYNVSTIEKYMARFSLILSKTIKLEVDLADATVETIEDIPF 504
              YILSGK + EAR  FMH+  VS++  YM+R SLILSKT+KLEVD +   +E IED P 
Sbjct: 338  YQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPC 397

Query: 505  QDENGSIIHDEDGKPILHTDGTGYISEDLAMQCPKDFSTAKYIRDNSFE--------IVN 660
            +D++G++++ +DG+ ++HTDGTG+ISEDLA++CP      K   D+S E          N
Sbjct: 398  RDKDGNVVY-KDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEAN 456

Query: 661  SGDAACQKRGAEARNKEPPLLMQCRLFHGGYAVKGTLLVNKKLEPGTIQIRPSMIKVVKD 840
              D A      E+   EPPLLMQ RLF+ G AVKGTLL+NKKL P TIQIRPSMIKV  D
Sbjct: 457  FSDVA----RTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKAD 512

Query: 841  RTSPMKETFNSLEIVNISHRPGRNCFSKYLIALLN 945
            R     +TFNSLE+V  S++P +   S+ LIALL+
Sbjct: 513  RDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLS 547


>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
            gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 3;
            Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
            3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
            polymerase 3 [Arabidopsis thaliana]
          Length = 992

 Score =  281 bits (718), Expect = 3e-73
 Identities = 158/327 (48%), Positives = 199/327 (60%), Gaps = 12/327 (3%)
 Frame = +1

Query: 1    HIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKILTVKFLE--------DGAYVTDK- 153
            H Y CHV  DGSY FKG  L +T  HL + LGDD +LTVKF +        +  Y T K 
Sbjct: 214  HYYQCHVATDGSYKFKGHLLENTGTHLHKVLGDDNVLTVKFDKVLGVETYCNDLYSTYKG 273

Query: 154  IVEEGILVGPWRYRFFVFKDERKRVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGNY 333
            I + GI+VG  RYRFFVFKD  K  KK      K  S   VKCYF+R DS         Y
Sbjct: 274  IAKNGIMVGLRRYRFFVFKDGGKEEKK------KDVSTKGVKCYFIRTDSTASIDMQNPY 327

Query: 334  ILSGKRISEARCRFMHIYNVSTIEKYMARFSLILSKTIKLEVDLADATVETIEDIPFQDE 513
            I +GK + EAR  FMH+  +S++  YM+RFSLILSKT  LEVD+   T E I+DI   D+
Sbjct: 328  IFAGKSMHEARMHFMHVNTLSSLPNYMSRFSLILSKTKTLEVDMTGITFEQIDDIHCHDQ 387

Query: 514  NGSIIHDEDGKPILHTDGTGYISEDLAMQCPKDFSTAKYIRDNSFEIVN---SGDAACQK 684
            +   + D++GKP +H+DGTGYISEDLA  CP +    K +R N+ +  N    G   C  
Sbjct: 388  DDKDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFKGKSMRSNNIQSKNLNFEGQGPC-- 445

Query: 685  RGAEARNKEPPLLMQCRLFHGGYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKET 864
                   +EPPLL+Q R+F+ GYAVKGT L NKKL P T+Q+RPSMIKV +DRT     T
Sbjct: 446  ------GQEPPLLIQFRIFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLST 499

Query: 865  FNSLEIVNISHRPGRNCFSKYLIALLN 945
            FNSLE+V  S+ P +   S+ L+ALL+
Sbjct: 500  FNSLEVVTTSNPPRKARLSRNLVALLS 526


>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
            RNA polymerase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 981

 Score =  280 bits (717), Expect = 4e-73
 Identities = 152/325 (46%), Positives = 198/325 (60%), Gaps = 10/325 (3%)
 Frame = +1

Query: 1    HIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKILTVKFLE----------DGAYVTD 150
            H Y CHV  DGSY FKGP L  T  HL + LGD+ +LTVKF +          D  +   
Sbjct: 213  HYYQCHVAPDGSYTFKGPLLEHTGTHLHKVLGDENVLTVKFADVPKNSSTYSNDRYFTYK 272

Query: 151  KIVEEGILVGPWRYRFFVFKDERKRVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGN 330
            +I + GI++G  RY+FFVFKD  K  KK  +  +K      VKCYF+R DS      +  
Sbjct: 273  EIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKK------VKCYFIRTDSTASCDMENP 326

Query: 331  YILSGKRISEARCRFMHIYNVSTIEKYMARFSLILSKTIKLEVDLADATVETIEDIPFQD 510
            YI +GK I EAR  FMH++   T+  YMARFSLILSKT  LEVD+   T + I+DI   D
Sbjct: 327  YIFTGKSIHEARMHFMHVHRAPTLANYMARFSLILSKTKTLEVDMTGITFDPIDDIHCHD 386

Query: 511  ENGSIIHDEDGKPILHTDGTGYISEDLAMQCPKDFSTAKYIRDNSFEIVNSGDAACQKRG 690
            ++G  + D++ KP +H+DGTGYISEDLA  CP +    K +R  + +             
Sbjct: 387  QDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLRSENIQ------------- 433

Query: 691  AEARNKEPPLLMQCRLFHGGYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFN 870
             EA N++PPLL+Q R+F+ GYAVKGT L+NKKL P T+Q+RPSMIKV KD +     TFN
Sbjct: 434  -EACNQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFN 492

Query: 871  SLEIVNISHRPGRNCFSKYLIALLN 945
            +LE+V  S+ P R   SK L+ALL+
Sbjct: 493  ALEVVTTSNPPRRTKLSKNLVALLS 517


>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
            sativus]
          Length = 1056

 Score =  277 bits (709), Expect = 4e-72
 Identities = 169/337 (50%), Positives = 207/337 (61%), Gaps = 22/337 (6%)
 Frame = +1

Query: 1    HIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKILTVKFLEDGA------------YV 144
            HIY CHV  DGS  FKGP+LN+T+ HLQR LGDD +L VKF ED +            Y 
Sbjct: 265  HIYHCHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYA 324

Query: 145  TDKIVEEGILVGPWRYRFFVFKDERKRVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDD 324
              KI  +GIL+G  RY FFVFKD  K  KK      K  + SAVKCYFVR++S       
Sbjct: 325  YSKIARDGILLGLRRYHFFVFKDGGKEEKK------KNPTTSAVKCYFVRMESDAYIDKI 378

Query: 325  GNYILSGKRISEARCRFMHIYNVSTIEKYMARFSLILSKTIKLEVDLADATVETIEDIPF 504
              Y LS + + EAR  FMH + VS+I  YMARFSLILSKTI L++DL+   V+ I DIP 
Sbjct: 379  EPYKLSNRTVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPC 438

Query: 505  QDENGSIIHDEDGKPILHTDGTGYISEDLAMQCPKDF--STAKYIRD--------NSFEI 654
            +D  G++I+  DGKP++HTDGTG+ISEDLA++CP +     AK+  D         +FE 
Sbjct: 439  KDIYGNVIY-RDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLKAIWQRIPAFEG 497

Query: 655  VNSGDAACQKRGAEARNKEPPLLMQCRLFHGGYAVKGTLLVNKKLEPGTIQIRPSMIKVV 834
              +        G E R  EPPLL+Q RLF+ G AVKGT L+NK+L P TIQIR SMIKV 
Sbjct: 498  FQNKTLQLTLPGLELR--EPPLLIQFRLFYNGLAVKGTFLLNKQLPPRTIQIRDSMIKVE 555

Query: 835  KDRTSPMKETFNSLEIVNISHRPGRNCFSKYLIALLN 945
             D      ET NSLE+V  S+ P R   S+ LIALLN
Sbjct: 556  IDPDLENFETENSLELVGTSNPPKRTFLSRNLIALLN 592


>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
            gi|482565615|gb|EOA29804.1| hypothetical protein
            CARUB_v10012898mg [Capsella rubella]
          Length = 982

 Score =  277 bits (708), Expect = 5e-72
 Identities = 155/325 (47%), Positives = 199/325 (61%), Gaps = 10/325 (3%)
 Frame = +1

Query: 1    HIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKILTVKFLE----------DGAYVTD 150
            H Y CHV  DGSY FKGP L ST  HL + LGD+ +LTVKF            D  +   
Sbjct: 217  HYYQCHVAPDGSYTFKGPLLESTGTHLHKVLGDENVLTVKFANVQKNSSTYCSDSYFTYK 276

Query: 151  KIVEEGILVGPWRYRFFVFKDERKRVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGN 330
             I + GI+VG  RY+FFVFKD  K   KNK  + K+A     KCYF+R DS      +  
Sbjct: 277  GIAKNGIMVGLRRYKFFVFKDGGKD-DKNKDVSTKRA-----KCYFIRTDSTASIDMEKP 330

Query: 331  YILSGKRISEARCRFMHIYNVSTIEKYMARFSLILSKTIKLEVDLADATVETIEDIPFQD 510
            YI SGK I EAR  FMH++ + ++  YMARFSLILSKT KLEVDL     E I+DIP  D
Sbjct: 331  YIFSGKSIHEARMHFMHVHTLPSLANYMARFSLILSKTKKLEVDLTGVNFEIIKDIPCHD 390

Query: 511  ENGSIIHDEDGKPILHTDGTGYISEDLAMQCPKDFSTAKYIRDNSFEIVNSGDAACQKRG 690
            ++G  + D++ KP +H+DGTGYISEDLA  CP +    K +R +  +             
Sbjct: 391  QDGKDVLDKNKKPRIHSDGTGYISEDLAQMCPVNIYKGKCLRSDKIK------------- 437

Query: 691  AEARNKEPPLLMQCRLFHGGYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFN 870
             EA  +EPPLL+Q R+F+ GYA+KGT L+NKK+   T+Q+RPSMIKV+ D + P   TFN
Sbjct: 438  -EACGQEPPLLIQFRMFYNGYAIKGTFLLNKKIPSRTVQVRPSMIKVLPD-SLPNISTFN 495

Query: 871  SLEIVNISHRPGRNCFSKYLIALLN 945
            +LE+VN S  P R   S+ L+ALL+
Sbjct: 496  TLEVVNTSFPPKRTKLSRNLVALLS 520


>ref|XP_006408907.1| hypothetical protein EUTSA_v10001896mg [Eutrema salsugineum]
            gi|557110063|gb|ESQ50360.1| hypothetical protein
            EUTSA_v10001896mg [Eutrema salsugineum]
          Length = 988

 Score =  273 bits (697), Expect = 9e-71
 Identities = 155/320 (48%), Positives = 194/320 (60%), Gaps = 9/320 (2%)
 Frame = +1

Query: 13   CHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKILTVKFLE--------DGAYVTDK-IVEE 165
            CHV  DGSY  KGP + +T  HL + LGDD +LTVKF +        +  Y T K I + 
Sbjct: 199  CHVAADGSYRLKGPLMENTGTHLHKVLGDDNVLTVKFADVPGEETYCNDLYSTYKGIAKN 258

Query: 166  GILVGPWRYRFFVFKDERKRVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGNYILSG 345
            GI+VG  RY+FFVFKD  K  KK      K  S   VKCYF+R DS         Y  SG
Sbjct: 259  GIMVGLRRYQFFVFKDGGKEEKK------KDFSTKGVKCYFIRTDSTASIDLQNPYFFSG 312

Query: 346  KRISEARCRFMHIYNVSTIEKYMARFSLILSKTIKLEVDLADATVETIEDIPFQDENGSI 525
            K I EAR  FMH+  + ++  YMARFSLILSKT KLEVD+   T + I+DI   D+  + 
Sbjct: 313  KSIHEARMHFMHVNTLPSLANYMARFSLILSKTKKLEVDMTGITFQQIDDIHCHDQENNN 372

Query: 526  IHDEDGKPILHTDGTGYISEDLAMQCPKDFSTAKYIRDNSFEIVNSGDAACQKRGAEARN 705
            + D+ GKP +H+DGTGYISEDLA  CP D    K I     + + S     + +G     
Sbjct: 373  VLDKHGKPCIHSDGTGYISEDLARMCPTDIFKGKCI---GIDNIQSKIPNVEAQG--TCG 427

Query: 706  KEPPLLMQCRLFHGGYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFNSLEIV 885
            KEPPLL+Q R+F+ GYAVKGT L+NKKL   T+Q+RPSMIKV  D+T     TFNSLE+V
Sbjct: 428  KEPPLLIQFRMFYDGYAVKGTFLLNKKLPDRTVQVRPSMIKVYNDQTLSNFSTFNSLEVV 487

Query: 886  NISHRPGRNCFSKYLIALLN 945
            N S+ P R   S+ L+ALL+
Sbjct: 488  NTSNPPNRTKLSRNLVALLS 507


>ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cicer
            arietinum]
          Length = 997

 Score =  273 bits (697), Expect = 9e-71
 Identities = 158/331 (47%), Positives = 205/331 (61%), Gaps = 16/331 (4%)
 Frame = +1

Query: 1    HIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKILTVKFLED------------GAYV 144
            HIY C V  +GS  FKGP L  TR HLQ+SLGDD +L VKF ED             A  
Sbjct: 208  HIYQCFVSPNGSLRFKGPILQHTRTHLQKSLGDDNVLLVKFAEDQYARKSETSAQKAAKH 267

Query: 145  TDKIVEEGILVGPWRYRFFVFKDERKRVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDD 324
             +K  +EG+ VG   YRFFVFK   K  KK      K  + S+VKCYFVR +S     + 
Sbjct: 268  YEKFGKEGLRVGLRLYRFFVFKVGGKEEKK------KDPTTSSVKCYFVRTESSCSTDER 321

Query: 325  GNYILSGKRISEARCRFMHIYNVSTIEKYMARFSLILSKTIKLEVDLADATVETIEDIPF 504
             +YILS + + E+R  FMH + +  I+KYMARFSLILSKT KL VD    +V+TI D+  
Sbjct: 322  ESYILSNRTMFESRSLFMHAHMLPNIDKYMARFSLILSKTYKLNVDWTTVSVKTIPDVCC 381

Query: 505  QDENGSIIHDEDGKPILHTDGTGYISEDLAMQCPKDFSTAKYIRDNSFE----IVNSGDA 672
            QDE+G+ ++  + + IL TDGTG+ISEDLA+ CP +      +++   +    +V   D 
Sbjct: 382  QDEHGNTVYHNEKRCIL-TDGTGFISEDLAVLCPNNVLKGSNLKNTHIKEISNLVKLEDM 440

Query: 673  ACQKRGAEARNKEPPLLMQCRLFHGGYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSP 852
            +     A     +PPLL+QCRLFH G A+KGTLLVNKKL P TIQ+RPSMIKV+ D +  
Sbjct: 441  SKAMGEAALSKHQPPLLIQCRLFHMGCAMKGTLLVNKKLSPSTIQVRPSMIKVMTDPSLS 500

Query: 853  MKETFNSLEIVNISHRPGRNCFSKYLIALLN 945
              ++ NS+E+VN SH+P R   SKYLIALL+
Sbjct: 501  NIQSLNSMEVVNTSHKPNRAYLSKYLIALLS 531


>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
            gi|557110064|gb|ESQ50361.1| hypothetical protein
            EUTSA_v10001897mg [Eutrema salsugineum]
          Length = 988

 Score =  272 bits (695), Expect = 2e-70
 Identities = 152/325 (46%), Positives = 198/325 (60%), Gaps = 10/325 (3%)
 Frame = +1

Query: 1    HIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKILTVKFLE----DGAYVTDK----- 153
            H Y CHV  DGSY FKGP L  T  HL + LGD+ +LTVKF +       Y  D+     
Sbjct: 221  HYYQCHVASDGSYTFKGPLLEPTGTHLHKVLGDENVLTVKFADVQKNSSTYSNDRYSAYK 280

Query: 154  -IVEEGILVGPWRYRFFVFKDERKRVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGN 330
             I + GI+VG  RY+FFVFKD  K  KK      K  S + VKCYF+R DS         
Sbjct: 281  RIAKNGIMVGLRRYQFFVFKDVGKAEKK------KDFSTNGVKCYFIRTDSTAANDMGKA 334

Query: 331  YILSGKRISEARCRFMHIYNVSTIEKYMARFSLILSKTIKLEVDLADATVETIEDIPFQD 510
            YI SGK I+EAR  FMH++ + ++ KYMARFSLILSKT KLEVD+   T + I++I   D
Sbjct: 335  YIFSGKTINEARMHFMHVHTLPSLAKYMARFSLILSKTKKLEVDMTGITYQEIKEIHCHD 394

Query: 511  ENGSIIHDEDGKPILHTDGTGYISEDLAMQCPKDFSTAKYIRDNSFEIVNSGDAACQKRG 690
            +N +++ D++ +P +H+DGTGYISEDLA  CP +              +  G    +K  
Sbjct: 395  QNNNVVLDKNKEPRMHSDGTGYISEDLARMCPVN--------------IFKGKCLSKKNI 440

Query: 691  AEARNKEPPLLMQCRLFHGGYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFN 870
             E+  ++PPLL+Q R+F+ G AVKGT L+NKKL   T+Q+RPSMIKV KDR      TFN
Sbjct: 441  QESCGQDPPLLIQFRMFYDGNAVKGTFLLNKKLPDRTVQVRPSMIKVSKDRALSNFSTFN 500

Query: 871  SLEIVNISHRPGRNCFSKYLIALLN 945
            SLE+V  S+ P R   S+ L+ALL+
Sbjct: 501  SLEVVTTSNPPKRTKLSRNLVALLS 525


>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
          Length = 988

 Score =  271 bits (693), Expect = 3e-70
 Identities = 157/333 (47%), Positives = 206/333 (61%), Gaps = 18/333 (5%)
 Frame = +1

Query: 1    HIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKILTVKFLEDGA------------YV 144
            H+Y C V  DG+  FKGP L STR HLQ++LGDD +L VKF EDG+             +
Sbjct: 197  HVYQCFVFPDGNLRFKGPILQSTRTHLQKTLGDDNVLLVKFAEDGSGKNFRTHAEEANAL 256

Query: 145  TDKIVEEGILVGPWRYRFFVFKDERKRVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDD 324
              K  +EGI VG   YRFFVFKD          E +K  + S VKCYFVR+ S     + 
Sbjct: 257  YGKFGKEGIRVGLRLYRFFVFKDGGNE------EKQKDPTSSTVKCYFVRMQSGCSADEG 310

Query: 325  GNYILSGKRISEARCRFMHIYNV-STIEKYMARFSLILSKTIKLEVDLADATVETIEDIP 501
             +YILS K +SEAR  FMH + +   + KYMARFSLILSKT+KL +DL   +V+ I D  
Sbjct: 311  ADYILSNKTVSEARTLFMHAHMLLPNLNKYMARFSLILSKTLKLNIDLTTVSVQKIPDEY 370

Query: 502  FQDENGSIIHDEDGKPILHTDGTGYISEDLAMQCPKDFSTAKYIRDNSFEIVNS-----G 666
             +D NG+I+ D + KP + TDGTG+IS DLA+ CP +      + +N  + +N+      
Sbjct: 371  CKDANGNIMVDNE-KPRILTDGTGFISRDLALLCPNNVYKGSNLENNCIQEINNLVELED 429

Query: 667  DAACQKRGAEARNKEPPLLMQCRLFHGGYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRT 846
             +       +    EPPLL+QCRLFH G+A+KGTLLVN+KL P TIQ+RPSMIKV KD +
Sbjct: 430  MSNAMGEAEQLSTHEPPLLIQCRLFHMGHAIKGTLLVNRKLPPRTIQVRPSMIKVEKDPS 489

Query: 847  SPMKETFNSLEIVNISHRPGRNCFSKYLIALLN 945
              M ++ NSLE+V  S++P R   SK+LIALL+
Sbjct: 490  VHM-QSINSLEVVTTSNKPKRGYLSKHLIALLS 521


>gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus notabilis]
          Length = 529

 Score =  270 bits (691), Expect = 5e-70
 Identities = 157/313 (50%), Positives = 200/313 (63%), Gaps = 18/313 (5%)
 Frame = +1

Query: 1    HIYCCHVCEDGSYYFKGPYLNSTRNHLQRSLGDDKILTVKFLEDGA----------YVT- 147
            HIY CHV  +GS+ FKGPYL   + HLQ+ LGDD +L VKF E+ A          Y   
Sbjct: 193  HIYRCHVSPEGSFRFKGPYLEKPKKHLQKVLGDDNVLMVKFAEEEAERFSIGSRDHYYAG 252

Query: 148  -DKIVEEGILVGPWRYRFFVFKDERKRVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDD 324
              KI  EGILVG  RY FFVFKD  K  KK      K  + S VKC+F+RI S      +
Sbjct: 253  YSKICREGILVGLRRYCFFVFKDGGKEEKK------KDPTSSPVKCFFIRIHSDACIDQN 306

Query: 325  GNYILSGKRISEARCRFMHIYNVSTIEKYMARFSLILSKTIKLEVDLADATVETIEDIPF 504
             +YILSG+ ISEAR  FMH + VS++  YM RFSLILS T+ L++DL+   ++ IED   
Sbjct: 307  VSYILSGRTISEARKLFMHAHTVSSVSNYMIRFSLILSNTLSLKIDLSSVNIDIIEDEYC 366

Query: 505  QDENGSIIHDEDGKPILHTDGTGYISEDLAMQCPKDFSTAKYIRDNSFEIVNSGD----- 669
            QDE+G+ I+  DGKP+++TDGTG+ISEDLA+ CPK+    K I DN+ EI+++ D     
Sbjct: 367  QDESGNPIY-RDGKPLIYTDGTGFISEDLALLCPKNLEKWKRINDNNIEIMHNQDGHVEN 425

Query: 670  -AACQKRGAEARNKEPPLLMQCRLFHGGYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRT 846
             A     G E    EPP+L+Q R+F+ G AVKGT LVNKKLEP TI+IR SM+KV  DR 
Sbjct: 426  VAEMGHHGTE--TLEPPMLIQFRMFNKGRAVKGTFLVNKKLEPKTIKIRHSMVKVEPDRK 483

Query: 847  SPMKETFNSLEIV 885
              + +T +SLEIV
Sbjct: 484  LLINQTSDSLEIV 496


>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
            gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 5;
            Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
            5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
            polymerase 5 [Arabidopsis thaliana]
          Length = 977

 Score =  270 bits (691), Expect = 5e-70
 Identities = 153/331 (46%), Positives = 197/331 (59%), Gaps = 16/331 (4%)
 Frame = +1

Query: 1    HIYCCHVCEDGSYYFK------GPYLNSTRNHLQRSLGDDKILTVKFLE----------D 132
            H Y C+V  +GSY FK      GP L  T  HL + LGDD +LTVKF +          D
Sbjct: 203  HYYQCNVAPNGSYTFKVLSALQGPLLEHTGTHLHKVLGDDNVLTVKFADVQKSSSTYSID 262

Query: 133  GAYVTDKIVEEGILVGPWRYRFFVFKDERKRVKKNKMENEKKASYSAVKCYFVRIDSVVP 312
              +    I + GI++G  RY+FFVFKD  K  KK  +  +K      VKCYF+R DS   
Sbjct: 263  HYFTYKGIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKK------VKCYFIRTDSTAF 316

Query: 313  YGDDGNYILSGKRISEARCRFMHIYNVSTIEKYMARFSLILSKTIKLEVDLADATVETIE 492
            Y     YIL+GK I EAR  FMH++   T+  YMARFSLILSKT  LEVD+   T + I+
Sbjct: 317  YDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSLILSKTKTLEVDMTGITFDQID 376

Query: 493  DIPFQDENGSIIHDEDGKPILHTDGTGYISEDLAMQCPKDFSTAKYIRDNSFEIVNSGDA 672
            DI   D++G  + D++ KP +H+DGTGYISEDLA  CP +    K +R  S +       
Sbjct: 377  DIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLRSESIQ------- 429

Query: 673  ACQKRGAEARNKEPPLLMQCRLFHGGYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSP 852
                   EA  ++PPLL+Q R+F+ GYAVKGT L+NKKL P T+Q+RPSMIKV KD +  
Sbjct: 430  -------EACYQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLS 482

Query: 853  MKETFNSLEIVNISHRPGRNCFSKYLIALLN 945
               TFN+LE+V  S+ P R   SK L+ALL+
Sbjct: 483  NFSTFNALEVVTTSNPPKRTKLSKNLVALLS 513