BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00027223
         (461 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004292254.1| PREDICTED: putative ribonuclease H protein A...    49   1e-07
ref|XP_004309966.1| PREDICTED: putative ribonuclease H protein A...    45   5e-07

>ref|XP_004292254.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 197

 Score = 48.5 bits (114), Expect(2) = 1e-07
 Identities = 33/87 (37%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
 Frame = -2

Query: 460 KSVPVLWHKPPSDLVKLNIDGATRGLINLAGLGGVLRIFYGFAMVLL---LPVMRALQQY 290
           K V V+WH P    VKLN DGA RG   LAG GG+ R   G  +      L +  AL+  
Sbjct: 25  KIVEVMWHVPSIYQVKLNTDGAARGSPGLAGFGGIFRDHLGHVLGCFSGNLGIANALEAE 84

Query: 289 YWLLLKAYQFSSQLVLIKSLWKHILWL 209
              ++ A Q +SQ       W H LW+
Sbjct: 85  LQTVIHAIQMASQ-----RGW-HSLWI 105



 Score = 33.1 bits (74), Expect(2) = 1e-07
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 180 RNLMAGMDLQFSHILREGNQVADAVAHLG 94
           R ++  M ++ SHI REGN +AD +A+ G
Sbjct: 135 RTILTTMTVKVSHIYREGNSIADCLANFG 163


>ref|XP_004309966.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 197

 Score = 44.7 bits (104), Expect(2) = 5e-07
 Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
 Frame = -2

Query: 460 KSVPVLWHKPPSDLVKLNIDGATRGLINLAGLGGVLRIFYGFAMVLL---LPVMRALQQY 290
           K V V+WH      VKLN DGA RG   LAG GG+ R   G  +      L +  AL+  
Sbjct: 25  KIVEVMWHVLSIYQVKLNTDGAARGSPGLAGFGGIFRDHLGQVLCCFSGNLGIATALEAE 84

Query: 289 YWLLLKAYQFSSQLVLIKSLW 227
              ++ A Q +SQ    +SLW
Sbjct: 85  LQAVIHAIQMASQRGW-RSLW 104



 Score = 34.7 bits (78), Expect(2) = 5e-07
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = -3

Query: 180 RNLMAGMDLQFSHILREGNQVADAVAHLG 94
           R ++  M ++ SHI REGN+VAD +A+ G
Sbjct: 135 RTILTSMTVKVSHIYREGNRVADCLANFG 163