BLASTX nr result

ID: Rehmannia23_contig00026700 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00026700
         (543 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002300727.2| hypothetical protein POPTR_0002s02860g [Popu...    68   2e-09
ref|XP_002300728.2| hypothetical protein POPTR_0002s02860g [Popu...    68   2e-09
ref|XP_002307701.2| hypothetical protein POPTR_0005s25670g [Popu...    65   1e-08

>ref|XP_002300727.2| hypothetical protein POPTR_0002s02860g [Populus trichocarpa]
           gi|550344155|gb|EEE80000.2| hypothetical protein
           POPTR_0002s02860g [Populus trichocarpa]
          Length = 1932

 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 55/164 (33%), Positives = 76/164 (46%), Gaps = 8/164 (4%)
 Frame = +2

Query: 68  EKNEGPLDSEGEALEDSLSAFFQKVQSGMTGKARNASRLKQVKQTQVLDDGSKPNSGAGS 247
           E +  PLD +   LEDS+SAFFQK QSG+  K+R  S  KQ+ + Q LDD   P SG GS
Sbjct: 183 ESSNRPLDGK---LEDSISAFFQKKQSGLARKSRANSSFKQINRVQCLDDRLSPGSGVGS 239

Query: 248 ------EAPVGKSESSSTLAKKFLVPDDNRHAAPGQGSIKSTS--IYRSVDDRLPEVINC 403
                  A    S S S++  K L  +++ H       + S+S  I    + RL      
Sbjct: 240 GGSKDVAARTIGSGSVSSVVCKDLEAENSFHTVADLSLLDSSSRQILHEKNQRLDNGFCE 299

Query: 404 TPENATDSKQGISSSTPDSNQIWRSTDCMDGSSREVISENSASV 535
           T     ++   I       ++  +S D   G S EV +E SA V
Sbjct: 300 TSYFTNENSDRIKGIPATKDETMKSDDKRHGKSSEVTAEVSAPV 343


>ref|XP_002300728.2| hypothetical protein POPTR_0002s02860g [Populus trichocarpa]
           gi|550344154|gb|EEE80001.2| hypothetical protein
           POPTR_0002s02860g [Populus trichocarpa]
          Length = 1907

 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 55/164 (33%), Positives = 76/164 (46%), Gaps = 8/164 (4%)
 Frame = +2

Query: 68  EKNEGPLDSEGEALEDSLSAFFQKVQSGMTGKARNASRLKQVKQTQVLDDGSKPNSGAGS 247
           E +  PLD +   LEDS+SAFFQK QSG+  K+R  S  KQ+ + Q LDD   P SG GS
Sbjct: 183 ESSNRPLDGK---LEDSISAFFQKKQSGLARKSRANSSFKQINRVQCLDDRLSPGSGVGS 239

Query: 248 ------EAPVGKSESSSTLAKKFLVPDDNRHAAPGQGSIKSTS--IYRSVDDRLPEVINC 403
                  A    S S S++  K L  +++ H       + S+S  I    + RL      
Sbjct: 240 GGSKDVAARTIGSGSVSSVVCKDLEAENSFHTVADLSLLDSSSRQILHEKNQRLDNGFCE 299

Query: 404 TPENATDSKQGISSSTPDSNQIWRSTDCMDGSSREVISENSASV 535
           T     ++   I       ++  +S D   G S EV +E SA V
Sbjct: 300 TSYFTNENSDRIKGIPATKDETMKSDDKRHGKSSEVTAEVSAPV 343


>ref|XP_002307701.2| hypothetical protein POPTR_0005s25670g [Populus trichocarpa]
           gi|550339740|gb|EEE94697.2| hypothetical protein
           POPTR_0005s25670g [Populus trichocarpa]
          Length = 1669

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 57/192 (29%), Positives = 89/192 (46%), Gaps = 17/192 (8%)
 Frame = +2

Query: 5   GTSELDDDFKQNISGNDAMQHEKNEGPLDSEGEA-----LEDSLSAFFQKVQSGMTGKAR 169
           G + +DDD +   S    +++++ E  L  E  +     LEDS+SAF+QK QSG   K+ 
Sbjct: 159 GDAAVDDDSEGLGSQGALLENQEEESLLPGESSSQSLDKLEDSISAFYQKKQSGSVRKSC 218

Query: 170 NASRLKQVKQTQVLDDGSKPNSGAGS------EAPVGKSESSSTLAKKFLVPDDNRHAAP 331
             S  KQ+ + Q L+    P +G GS      +    +S   S++  K L   D+ H   
Sbjct: 219 ANSSSKQINRVQCLEARLSPETGVGSGGSKDVDLSTFRSSPVSSVVCKDLEGGDSSHIVA 278

Query: 332 GQGSIKSTSIY------RSVDDRLPEVINCTPENATDSKQGISSSTPDSNQIWRSTDCMD 493
               + STS        + +D+   E   C  EN +D  +G+S S  +S    +S D   
Sbjct: 279 NSSLLDSTSRQILNTKNQRLDNGFGETSYCIEEN-SDRIKGLSVSKDES---MKSNDKRH 334

Query: 494 GSSREVISENSA 529
           G S EV +E +A
Sbjct: 335 GKSSEVTAEVAA 346


Top