BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00026184
         (428 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006347873.1| PREDICTED: pentatricopeptide repeat-containi...   171   7e-41
ref|XP_002511709.1| pentatricopeptide repeat-containing protein,...   171   7e-41
ref|XP_002511699.1| pentatricopeptide repeat-containing protein,...   171   7e-41
ref|XP_004229808.1| PREDICTED: pentatricopeptide repeat-containi...   167   1e-39
emb|CBI38872.3| unnamed protein product [Vitis vinifera]              163   2e-38
ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containi...   163   2e-38
emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]   162   4e-38
gb|ESW27348.1| hypothetical protein PHAVU_003G194000g [Phaseolus...   157   2e-36
ref|XP_006490914.1| PREDICTED: pentatricopeptide repeat-containi...   154   2e-35
ref|XP_006445271.1| hypothetical protein CICLE_v10023562mg, part...   154   2e-35
ref|XP_004514160.1| PREDICTED: pentatricopeptide repeat-containi...   153   3e-35
gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionem...   148   6e-34
ref|XP_002320719.2| pentatricopeptide repeat-containing family p...   148   8e-34
gb|EOX96228.1| Pentatricopeptide repeat (PPR) superfamily protei...   147   1e-33
gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]         146   3e-33
gb|AHB18411.1| pentatricopeptide repeat-containing protein [Goss...   145   4e-33
ref|XP_006296085.1| hypothetical protein CARUB_v10025235mg [Caps...   144   2e-32
gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pas...   143   3e-32
ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containi...   142   3e-32
gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wall...   142   6e-32

>ref|XP_006347873.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Solanum tuberosum]
          Length = 625

 Score =  171 bits (434), Expect = 7e-41
 Identities = 81/128 (63%), Positives = 101/128 (78%)
 Frame = +3

Query: 3   WNTMISGYMKLENGFESARDLFDKMPDKDLVSWNLMIDCCAKNGKMGTAQVLFDRMPERD 182
           WN M++GY+KL+ GF+ A +LFDKMP++DLVSWNLM+ CC K+G    A  LFD +P++D
Sbjct: 224 WNAMLTGYVKLDQGFDVAWELFDKMPERDLVSWNLMLYCCVKSGNAEKATALFDMIPKKD 283

Query: 183 VVSWASMVDGYARMGNVNAARCFFDAMPQRDVISCNAMMAGYVNNGCYNEALKVFHDMLG 362
           VVSWA MVDGYA++G ++ AR +FD MP RDVISCNA+MAGYV NG   EALKVFHDML 
Sbjct: 284 VVSWAIMVDGYAKIGKIDIARRYFDDMPVRDVISCNAIMAGYVKNGHCLEALKVFHDML- 342

Query: 363 SAFALAPD 386
              +LAPD
Sbjct: 343 RGNSLAPD 350


>ref|XP_002511709.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548889|gb|EEF50378.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 450

 Score =  171 bits (434), Expect = 7e-41
 Identities = 76/118 (64%), Positives = 97/118 (82%)
 Frame = +3

Query: 3   WNTMISGYMKLENGFESARDLFDKMPDKDLVSWNLMIDCCAKNGKMGTAQVLFDRMPERD 182
           WN+++SGYM+ +NGFE A +LF+KMP++DL+SWN MID CAK G+M  AQ LFD MPER 
Sbjct: 202 WNSLLSGYMRSDNGFELAWNLFEKMPERDLISWNSMIDGCAKRGRMEDAQALFDTMPERT 261

Query: 183 VVSWASMVDGYARMGNVNAARCFFDAMPQRDVISCNAMMAGYVNNGCYNEALKVFHDM 356
           ++SWA+MVDGYA++G V+ AR FFD MP RDV++CNAMM+GYV NG   EAL +FHDM
Sbjct: 262 IISWANMVDGYAKLGYVDIARKFFDNMPDRDVVACNAMMSGYVQNGYCMEALGIFHDM 319



 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
 Frame = +3

Query: 87  DLVSWNLMIDCCAKNGKMGTAQVLFDRMPERDVVSWASMVDGYARMGNVNAARCFFDAMP 266
           D+   N +I    K   +  A+ +FD+MP RD VS+ SM+ GY + GN++ AR  +D MP
Sbjct: 134 DVFLQNCLIGLYVKCRCIDYARQVFDKMPMRDSVSYNSMIAGYVKHGNIDLARQLYDVMP 193

Query: 267 --QRDVISCNAMMAGYVNN 317
              R+++S N++++GY+ +
Sbjct: 194 INWRNLVSWNSLLSGYMRS 212


>ref|XP_002511699.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548879|gb|EEF50368.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 474

 Score =  171 bits (434), Expect = 7e-41
 Identities = 76/118 (64%), Positives = 97/118 (82%)
 Frame = +3

Query: 3   WNTMISGYMKLENGFESARDLFDKMPDKDLVSWNLMIDCCAKNGKMGTAQVLFDRMPERD 182
           WN+++SGYM+ +NGFE A +LF+KMP++DL+SWN MID CAK G+M  AQ LFD MPER 
Sbjct: 226 WNSLLSGYMRSDNGFELAWNLFEKMPERDLISWNSMIDGCAKRGRMEDAQALFDTMPERT 285

Query: 183 VVSWASMVDGYARMGNVNAARCFFDAMPQRDVISCNAMMAGYVNNGCYNEALKVFHDM 356
           ++SWA+MVDGYA++G V+ AR FFD MP RDV++CNAMM+GYV NG   EAL +FHDM
Sbjct: 286 IISWANMVDGYAKLGYVDIARKFFDNMPDRDVVACNAMMSGYVQNGYCMEALGIFHDM 343



 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
 Frame = +3

Query: 87  DLVSWNLMIDCCAKNGKMGTAQVLFDRMPERDVVSWASMVDGYARMGNVNAARCFFDAMP 266
           D+   N +I    K   +  A+ +FD+MP RD VS+ SM+ GY + GN++ AR  +D MP
Sbjct: 158 DVFLQNCLIGLYVKCRCIDYARQVFDKMPMRDSVSYNSMIAGYVKHGNIDLARQLYDVMP 217

Query: 267 --QRDVISCNAMMAGYVNN 317
              R+++S N++++GY+ +
Sbjct: 218 INWRNLVSWNSLLSGYMRS 236


>ref|XP_004229808.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Solanum lycopersicum]
          Length = 625

 Score =  167 bits (424), Expect = 1e-39
 Identities = 78/128 (60%), Positives = 100/128 (78%)
 Frame = +3

Query: 3   WNTMISGYMKLENGFESARDLFDKMPDKDLVSWNLMIDCCAKNGKMGTAQVLFDRMPERD 182
           WN +++GY+KL+ GF+ A +LFD+MP +DLVSWNLM+ CC K+G    A  LFD +P++D
Sbjct: 224 WNALLTGYVKLDQGFDVAWELFDRMPQRDLVSWNLMLYCCVKSGNAEKATALFDMIPKKD 283

Query: 183 VVSWASMVDGYARMGNVNAARCFFDAMPQRDVISCNAMMAGYVNNGCYNEALKVFHDMLG 362
           VVSWA MVDGYA++G ++ AR +FD MP RDVISCNA+MAGYV NG   EALKVFHDML 
Sbjct: 284 VVSWAIMVDGYAKIGKIDIARRYFDDMPVRDVISCNAIMAGYVKNGHCLEALKVFHDMLS 343

Query: 363 SAFALAPD 386
            + + APD
Sbjct: 344 DS-SPAPD 350


>emb|CBI38872.3| unnamed protein product [Vitis vinifera]
          Length = 379

 Score =  163 bits (413), Expect = 2e-38
 Identities = 80/128 (62%), Positives = 96/128 (75%)
 Frame = +3

Query: 3   WNTMISGYMKLENGFESARDLFDKMPDKDLVSWNLMIDCCAKNGKMGTAQVLFDRMPERD 182
           WN+MISGY + E G   A +LF++MP +DL+SWN MID C K GKM  A  LF++MP+RD
Sbjct: 224 WNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNQMPKRD 283

Query: 183 VVSWASMVDGYARMGNVNAARCFFDAMPQRDVISCNAMMAGYVNNGCYNEALKVFHDMLG 362
           VVSWA+MVDGYA++G ++ AR  FD MP+RDVISCNAMMAGYV NG   EAL  FHDML 
Sbjct: 284 VVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGHLMEALNFFHDML- 342

Query: 363 SAFALAPD 386
           S   L PD
Sbjct: 343 SRKELFPD 350



 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
 Frame = +3

Query: 87  DLVSWNLMIDCCAKNGKMGTAQVLFDRMPERDVVSWASMVDGYARMGNVNAARCFFDAMP 266
           D+   N ++    + G +G A+ LFDRM +RD VS+ SM+DGY + G V +AR  FD MP
Sbjct: 156 DVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSARELFDVMP 215

Query: 267 --QRDVISCNAMMAGYVNNGCYNEALKV 344
             Q+++IS N+M++GY  +    E L+V
Sbjct: 216 MEQKNLISWNSMISGYARS---EEGLRV 240


>ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Vitis vinifera]
          Length = 635

 Score =  163 bits (413), Expect = 2e-38
 Identities = 80/128 (62%), Positives = 96/128 (75%)
 Frame = +3

Query: 3   WNTMISGYMKLENGFESARDLFDKMPDKDLVSWNLMIDCCAKNGKMGTAQVLFDRMPERD 182
           WN+MISGY + E G   A +LF++MP +DL+SWN MID C K GKM  A  LF++MP+RD
Sbjct: 224 WNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNQMPKRD 283

Query: 183 VVSWASMVDGYARMGNVNAARCFFDAMPQRDVISCNAMMAGYVNNGCYNEALKVFHDMLG 362
           VVSWA+MVDGYA++G ++ AR  FD MP+RDVISCNAMMAGYV NG   EAL  FHDML 
Sbjct: 284 VVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGHLMEALNFFHDML- 342

Query: 363 SAFALAPD 386
           S   L PD
Sbjct: 343 SRKELFPD 350



 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
 Frame = +3

Query: 87  DLVSWNLMIDCCAKNGKMGTAQVLFDRMPERDVVSWASMVDGYARMGNVNAARCFFDAMP 266
           D+   N ++    + G +G A+ LFDRM +RD VS+ SM+DGY + G V +AR  FD MP
Sbjct: 156 DVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSARELFDVMP 215

Query: 267 --QRDVISCNAMMAGYVNNGCYNEALKV 344
             Q+++IS N+M++GY  +    E L+V
Sbjct: 216 MEQKNLISWNSMISGYARS---EEGLRV 240


>emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]
          Length = 690

 Score =  162 bits (410), Expect = 4e-38
 Identities = 76/119 (63%), Positives = 91/119 (76%)
 Frame = +3

Query: 3   WNTMISGYMKLENGFESARDLFDKMPDKDLVSWNLMIDCCAKNGKMGTAQVLFDRMPERD 182
           WN+MISGY + E G   A +LF++MP +DL+SWN MID C K GKM  A  LF+ MP+RD
Sbjct: 280 WNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNXMPKRD 339

Query: 183 VVSWASMVDGYARMGNVNAARCFFDAMPQRDVISCNAMMAGYVNNGCYNEALKVFHDML 359
           VVSWA+MVDGYA++G ++ AR  FD MP+RDVISCNAMMAGYV NG   EAL  FHDML
Sbjct: 340 VVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGXLMEALXFFHDML 398



 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 37/88 (42%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
 Frame = +3

Query: 87  DLVSWNLMIDCCAKNGKMGTAQVLFDRMPERDVVSWASMVDGYARMGNVNAARCFFDAMP 266
           D+   N ++    + G +G A+ LFDRM  RD VS+ SM+DGY + G V +AR  FD MP
Sbjct: 212 DVFLQNCLMCLYLRCGCLGIARQLFDRMMXRDSVSFNSMIDGYVKHGMVKSARELFDVMP 271

Query: 267 --QRDVISCNAMMAGYVNNGCYNEALKV 344
             Q+++IS N+M++GY  +    E L+V
Sbjct: 272 MEQKNLISWNSMISGYARS---EEGLRV 296


>gb|ESW27348.1| hypothetical protein PHAVU_003G194000g [Phaseolus vulgaris]
          Length = 618

 Score =  157 bits (396), Expect = 2e-36
 Identities = 74/118 (62%), Positives = 90/118 (76%)
 Frame = +3

Query: 3   WNTMISGYMKLENGFESARDLFDKMPDKDLVSWNLMIDCCAKNGKMGTAQVLFDRMPERD 182
           WN+MI GY+  E G   A  LF KMP++DLVSWN MI  C K+G++  A+ LFD MPERD
Sbjct: 219 WNSMIGGYVMWEEGLGFAWSLFVKMPERDLVSWNTMIGGCVKHGRVEDARRLFDEMPERD 278

Query: 183 VVSWASMVDGYARMGNVNAARCFFDAMPQRDVISCNAMMAGYVNNGCYNEALKVFHDM 356
           +VSW +M+DGYA+ G+V AAR  FD MP+RDVISCN+MMAGYV NG   EALK+FHDM
Sbjct: 279 LVSWVTMIDGYAKSGDVLAARRLFDEMPRRDVISCNSMMAGYVQNGYCVEALKIFHDM 336



 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 32/75 (42%), Positives = 49/75 (65%)
 Frame = +3

Query: 87  DLVSWNLMIDCCAKNGKMGTAQVLFDRMPERDVVSWASMVDGYARMGNVNAARCFFDAMP 266
           D+   N +I    + G +  A+ +FDRMP+RD+VS+ SM+ GY + G V  AR  FD M 
Sbjct: 153 DVFLQNCLIGLFVRCGCVELARQVFDRMPDRDIVSYNSMIGGYVKFGKVEQARDLFDGME 212

Query: 267 QRDVISCNAMMAGYV 311
           +R++I+ N+M+ GYV
Sbjct: 213 ERNLITWNSMIGGYV 227


>ref|XP_006490914.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Citrus sinensis]
          Length = 634

 Score =  154 bits (388), Expect = 2e-35
 Identities = 66/118 (55%), Positives = 94/118 (79%)
 Frame = +3

Query: 3   WNTMISGYMKLENGFESARDLFDKMPDKDLVSWNLMIDCCAKNGKMGTAQVLFDRMPERD 182
           WN++++GY +L++G + A  +F+KMP++DL+SWN M+  C K GKM  AQ LFD+MP+RD
Sbjct: 221 WNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRD 280

Query: 183 VVSWASMVDGYARMGNVNAARCFFDAMPQRDVISCNAMMAGYVNNGCYNEALKVFHDM 356
           VVSWA+M+DGYA++G V+ AR  FD MP+RDV++CNAMM GYV NG   +AL++F +M
Sbjct: 281 VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM 338



 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
 Frame = +3

Query: 87  DLVSWNLMIDCCAKNGKMGTAQVLFDRMPERDVVSWASMVDGYARMGNVNAARCFFDAMP 266
           DL   N +I    + G +  A+ LFD+M  RD VS+ SM+DGY + GN+ +AR  FD+MP
Sbjct: 153 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 212

Query: 267 --QRDVISCNAMMAGY 308
             +R++IS N+++ GY
Sbjct: 213 IRERNLISWNSVLNGY 228


>ref|XP_006445271.1| hypothetical protein CICLE_v10023562mg, partial [Citrus clementina]
           gi|557547533|gb|ESR58511.1| hypothetical protein
           CICLE_v10023562mg, partial [Citrus clementina]
          Length = 658

 Score =  154 bits (388), Expect = 2e-35
 Identities = 66/118 (55%), Positives = 94/118 (79%)
 Frame = +3

Query: 3   WNTMISGYMKLENGFESARDLFDKMPDKDLVSWNLMIDCCAKNGKMGTAQVLFDRMPERD 182
           WN++++GY +L++G + A  +F+KMP++DL+SWN M+  C K GKM  AQ LFD+MP+RD
Sbjct: 278 WNSVLNGYAQLKSGLQFAWQIFEKMPERDLISWNSMLHGCVKCGKMDDAQALFDKMPKRD 337

Query: 183 VVSWASMVDGYARMGNVNAARCFFDAMPQRDVISCNAMMAGYVNNGCYNEALKVFHDM 356
           VVSWA+M+DGYA++G V+ AR  FD MP+RDV++CNAMM GYV NG   +AL++F +M
Sbjct: 338 VVSWANMIDGYAKLGRVDIARRLFDEMPKRDVVACNAMMGGYVRNGYSMKALEIFDNM 395



 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
 Frame = +3

Query: 87  DLVSWNLMIDCCAKNGKMGTAQVLFDRMPERDVVSWASMVDGYARMGNVNAARCFFDAMP 266
           DL   N +I    + G +  A+ LFD+M  RD VS+ SM+DGY + GN+ +AR  FD+MP
Sbjct: 210 DLFLQNCLISLYVRCGYLEFARQLFDKMGIRDSVSYNSMIDGYVKSGNIESARELFDSMP 269

Query: 267 --QRDVISCNAMMAGY 308
             +R++IS N+++ GY
Sbjct: 270 IRERNLISWNSVLNGY 285


>ref|XP_004514160.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cicer arietinum]
          Length = 630

 Score =  153 bits (386), Expect = 3e-35
 Identities = 70/122 (57%), Positives = 90/122 (73%), Gaps = 4/122 (3%)
 Frame = +3

Query: 3   WNTMISGYMKL----ENGFESARDLFDKMPDKDLVSWNLMIDCCAKNGKMGTAQVLFDRM 170
           WN+MI GY++     ++G   A  LF KMP++DLVSWN MID C K G M  AQ  FD+M
Sbjct: 227 WNSMIGGYLRYGEDDDDGLRFAWSLFVKMPERDLVSWNTMIDGCVKRGNMEDAQAFFDKM 286

Query: 171 PERDVVSWASMVDGYARMGNVNAARCFFDAMPQRDVISCNAMMAGYVNNGCYNEALKVFH 350
           P+RD+VSW +M+DGYA++G++ AA   FD MP+RDV+ CN+MMAGYV NG   EALK+FH
Sbjct: 287 PKRDLVSWVTMIDGYAKLGDIVAATSLFDGMPRRDVVCCNSMMAGYVQNGYCIEALKLFH 346

Query: 351 DM 356
           DM
Sbjct: 347 DM 348


>gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionema grandiflorum]
          Length = 594

 Score =  148 bits (374), Expect = 6e-34
 Identities = 69/128 (53%), Positives = 97/128 (75%)
 Frame = +3

Query: 3   WNTMISGYMKLENGFESARDLFDKMPDKDLVSWNLMIDCCAKNGKMGTAQVLFDRMPERD 182
           WN+MISGY +  +G  +A  LF +MP+KDL+SWN MI+ C K+G++  A+ LFD MP RD
Sbjct: 203 WNSMISGYAQTADGLNTASKLFSEMPEKDLISWNSMINGCVKHGRIEDAKGLFDVMPRRD 262

Query: 183 VVSWASMVDGYARMGNVNAARCFFDAMPQRDVISCNAMMAGYVNNGCYNEALKVFHDMLG 362
           VV+WA+M+DGYA++G V+ A+  FD M QRDV++CN+MMAGYV N  + EAL++F+DM  
Sbjct: 263 VVTWATMIDGYAKLGFVHHAKSLFDQMHQRDVVACNSMMAGYVQNKYHMEALEIFNDMEK 322

Query: 363 SAFALAPD 386
            +  L+PD
Sbjct: 323 DSH-LSPD 329



 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
 Frame = +3

Query: 87  DLVSWNLMIDCCAKNGKMGTAQVLFDRMPERDVVSWASMVDGYARMGNVNAARCFFDAMP 266
           DL   N +I    K G +G A+ +FDRMP+RD VS+ SM+DGY + G + +A   FD MP
Sbjct: 135 DLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLMKSAHKLFDLMP 194

Query: 267 Q--RDVISCNAMMAGYVNNG-CYNEALKVFHDM 356
           +  +++IS N+M++GY       N A K+F +M
Sbjct: 195 REIKNLISWNSMISGYAQTADGLNTASKLFSEM 227


>ref|XP_002320719.2| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|550323642|gb|EEE99034.2|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 643

 Score =  148 bits (373), Expect = 8e-34
 Identities = 69/118 (58%), Positives = 87/118 (73%)
 Frame = +3

Query: 3   WNTMISGYMKLENGFESARDLFDKMPDKDLVSWNLMIDCCAKNGKMGTAQVLFDRMPERD 182
           WN++I GY + E+G   A  LF KMP++DL+SWN MID C K G+M  AQ LFDRMP RD
Sbjct: 229 WNSLIRGYAQSEDGILVAWQLFAKMPERDLISWNSMIDGCVKCGRMEDAQGLFDRMPNRD 288

Query: 183 VVSWASMVDGYARMGNVNAARCFFDAMPQRDVISCNAMMAGYVNNGCYNEALKVFHDM 356
           +VSWA+M+DGYA+ G V+ AR  FD MP+RDV++ NAMM GYV NG   EAL +F+ M
Sbjct: 289 IVSWANMIDGYAKNGRVDIARSLFDEMPERDVVAYNAMMGGYVQNGYCMEALGIFYGM 346



 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
 Frame = +3

Query: 87  DLVSWNLMIDCCAKNGKMGTAQVLFDRMPERDVVSWASMVDGYARMGNVNAARCFFDAMP 266
           DL   N +I    K G +  A  +FDRMP+RD VS+ SM+DGY + G ++ AR  FD +P
Sbjct: 161 DLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARVVFDCIP 220

Query: 267 --QRDVISCNAMMAGYVNN 317
             +R++IS N+++ GY  +
Sbjct: 221 LEERNLISWNSLIRGYAQS 239


>gb|EOX96228.1| Pentatricopeptide repeat (PPR) superfamily protein, putative
           [Theobroma cacao]
          Length = 637

 Score =  147 bits (371), Expect = 1e-33
 Identities = 67/118 (56%), Positives = 90/118 (76%)
 Frame = +3

Query: 3   WNTMISGYMKLENGFESARDLFDKMPDKDLVSWNLMIDCCAKNGKMGTAQVLFDRMPERD 182
           WN+MISGY +LE G   A  LF++MPD+DL+SWN MI+   K G M  AQ LF +MP+RD
Sbjct: 224 WNSMISGYAQLEYGMVMALKLFEEMPDRDLISWNSMINGFVKCGNMEDAQALFVKMPKRD 283

Query: 183 VVSWASMVDGYARMGNVNAARCFFDAMPQRDVISCNAMMAGYVNNGCYNEALKVFHDM 356
           VVSWA+M++GYA++G ++ AR  FD MP+RDV+ CNAMM GYV NG  +EAL++F+ +
Sbjct: 284 VVSWANMINGYAKVGKIDLARRLFDEMPERDVVVCNAMMGGYVQNGYCSEALEIFYHL 341



 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
 Frame = +3

Query: 87  DLVSWNLMIDCCAKNGKMGTAQVLFDRMPERDVVSWASMVDGYARMGNVNAARCFFDAMP 266
           DL   N +I    + G +G A+ LFDRM  RD VS+ SM+DGY + G ++ AR  F+ MP
Sbjct: 156 DLFLQNCLISLYIRCGFVGYARQLFDRMCRRDSVSYNSMIDGYIKTGMIHLARELFEFMP 215

Query: 267 QRD--VISCNAMMAGYVN-NGCYNEALKVFHDM 356
             D  +I+ N+M++GY         ALK+F +M
Sbjct: 216 MEDKNLITWNSMISGYAQLEYGMVMALKLFEEM 248


>gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
          Length = 615

 Score =  146 bits (368), Expect = 3e-33
 Identities = 68/128 (53%), Positives = 98/128 (76%)
 Frame = +3

Query: 3   WNTMISGYMKLENGFESARDLFDKMPDKDLVSWNLMIDCCAKNGKMGTAQVLFDRMPERD 182
           WN+MI+GY +  +G + A +LFD+MP+KDL+SWN +ID   K+G++  A+ LFD+MP RD
Sbjct: 225 WNSMINGYAQRADGVDIASNLFDEMPEKDLISWNSLIDGYVKHGRIEDAKDLFDKMPRRD 284

Query: 183 VVSWASMVDGYARMGNVNAARCFFDAMPQRDVISCNAMMAGYVNNGCYNEALKVFHDMLG 362
           VV+WA+MVDGYA++G V+ A+  FD MPQRDV++ N+MMAGYV N  + EA+ +F+DM  
Sbjct: 285 VVTWATMVDGYAKLGFVHQAKSLFDQMPQRDVVAYNSMMAGYVQNRYHMEAIDIFNDMEK 344

Query: 363 SAFALAPD 386
            +  L+PD
Sbjct: 345 ESH-LSPD 351



 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 34/76 (44%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
 Frame = +3

Query: 87  DLVSWNLMIDCCAKNGKMGTAQVLFDRMPERDVVSWASMVDGYARMGNVNAARCFFDAMP 266
           DL   N +I    K G +G A+ +FDRM +RD VS+ SM+DGY + G + +AR  FD MP
Sbjct: 157 DLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLIESARELFDLMP 216

Query: 267 --QRDVISCNAMMAGY 308
             ++++IS N+M+ GY
Sbjct: 217 SEKKNLISWNSMINGY 232


>gb|AHB18411.1| pentatricopeptide repeat-containing protein [Gossypium hirsutum]
          Length = 637

 Score =  145 bits (367), Expect = 4e-33
 Identities = 68/128 (53%), Positives = 95/128 (74%)
 Frame = +3

Query: 3   WNTMISGYMKLENGFESARDLFDKMPDKDLVSWNLMIDCCAKNGKMGTAQVLFDRMPERD 182
           WN+MISGY +L++G   A  LF+KMPD+DL+SWN MI+   K G M  AQ+LFD+MP RD
Sbjct: 224 WNSMISGYTQLKDGMGLALGLFEKMPDRDLISWNSMINGFVKCGNMEDAQILFDKMPRRD 283

Query: 183 VVSWASMVDGYARMGNVNAARCFFDAMPQRDVISCNAMMAGYVNNGCYNEALKVFHDMLG 362
           VVSWA+M++GYA++G ++ AR  F+ M +RD++ CNAMMAG V NG   EAL++F+ +  
Sbjct: 284 VVSWANMINGYAKVGKIDLARSLFNEMSERDIVVCNAMMAGCVQNGYCGEALEIFYHLPR 343

Query: 363 SAFALAPD 386
           +  +L PD
Sbjct: 344 NC-SLQPD 350



 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
 Frame = +3

Query: 87  DLVSWNLMIDCCAKNGKMGTAQVLFDRMPERDVVSWASMVDGYARMGNVNAARCFFDAMP 266
           DL   N +I    + G +G A+ LFDRM  RD VS+ SM+DGY + G ++ A+  FD MP
Sbjct: 156 DLFLQNCLISYYLRCGFIGYARQLFDRMSMRDSVSYNSMIDGYIKRGMIDLAKELFDVMP 215

Query: 267 --QRDVISCNAMMAGY 308
              +++I+ N+M++GY
Sbjct: 216 LENKNLITWNSMISGY 231


>ref|XP_006296085.1| hypothetical protein CARUB_v10025235mg [Capsella rubella]
           gi|482564793|gb|EOA28983.1| hypothetical protein
           CARUB_v10025235mg [Capsella rubella]
          Length = 607

 Score =  144 bits (362), Expect = 2e-32
 Identities = 69/128 (53%), Positives = 94/128 (73%)
 Frame = +3

Query: 3   WNTMISGYMKLENGFESARDLFDKMPDKDLVSWNLMIDCCAKNGKMGTAQVLFDRMPERD 182
           WN++ISGY +  NGF+ A  LF +MP+KDL+SWN MID   K+G++  A+ LFD MP RD
Sbjct: 217 WNSIISGYAQASNGFDIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKELFDVMPSRD 276

Query: 183 VVSWASMVDGYARMGNVNAARCFFDAMPQRDVISCNAMMAGYVNNGCYNEALKVFHDMLG 362
           VV+WA+M+DGYA++G V+ A+  FD MP RDV+S N+MMAGYV N  + EAL++F  M  
Sbjct: 277 VVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMMAGYVQNKYHMEALEIFSHMEK 336

Query: 363 SAFALAPD 386
            +  L+PD
Sbjct: 337 ESH-LSPD 343



 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 40/94 (42%), Positives = 64/94 (68%), Gaps = 4/94 (4%)
 Frame = +3

Query: 87  DLVSWNLMIDCCAKNGKMGTAQVLFDRMPERDVVSWASMVDGYARMGNVNAARCFFDAMP 266
           DL   N +I    K G +G A+ +FDRMP+RD VS+ SM+DGY + G++ +AR  FD MP
Sbjct: 149 DLFLHNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYVKCGSIESARELFDLMP 208

Query: 267 Q--RDVISCNAMMAGY--VNNGCYNEALKVFHDM 356
           +  +++IS N++++GY   +NG ++ A K+F +M
Sbjct: 209 REVKNLISWNSIISGYAQASNG-FDIASKLFAEM 241


>gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
          Length = 617

 Score =  143 bits (360), Expect = 3e-32
 Identities = 68/128 (53%), Positives = 95/128 (74%)
 Frame = +3

Query: 3   WNTMISGYMKLENGFESARDLFDKMPDKDLVSWNLMIDCCAKNGKMGTAQVLFDRMPERD 182
           WN++ISGY +  +G + A +LF +MP+KDL+SWN MID   K+G++  A+ LFD MP RD
Sbjct: 227 WNSIISGYAQTSDGVDIASNLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDAMPRRD 286

Query: 183 VVSWASMVDGYARMGNVNAARCFFDAMPQRDVISCNAMMAGYVNNGCYNEALKVFHDMLG 362
           VV+WA+M+DGYA++G V+ A+  FD MP RDV+S N+MMAGYV N  + EAL++F DM  
Sbjct: 287 VVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMMAGYVQNKYHMEALEIFSDMEK 346

Query: 363 SAFALAPD 386
            +  L+PD
Sbjct: 347 ESH-LSPD 353



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 34/76 (44%), Positives = 52/76 (68%), Gaps = 2/76 (2%)
 Frame = +3

Query: 87  DLVSWNLMIDCCAKNGKMGTAQVLFDRMPERDVVSWASMVDGYARMGNVNAARCFFDAMP 266
           DL   N +I    K G +G A+ +FDRMP+RD VS+ SM+DGY + G + +AR  FD MP
Sbjct: 159 DLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYVKRGLIESARELFDLMP 218

Query: 267 Q--RDVISCNAMMAGY 308
           +  +++IS N++++GY
Sbjct: 219 REVKNLISWNSIISGY 234


>ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
           gi|449480068|ref|XP_004155790.1| PREDICTED:
           pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
          Length = 638

 Score =  142 bits (359), Expect = 3e-32
 Identities = 63/128 (49%), Positives = 95/128 (74%)
 Frame = +3

Query: 3   WNTMISGYMKLENGFESARDLFDKMPDKDLVSWNLMIDCCAKNGKMGTAQVLFDRMPERD 182
           WN+M+ G+ + ++G   A +LF+KMP++DLVSWN +I   AK G++  A  LF+RMP+RD
Sbjct: 227 WNSMLGGFAQTKDGIGLALELFEKMPERDLVSWNTIIGGFAKCGRIEFAHSLFNRMPKRD 286

Query: 183 VVSWASMVDGYARMGNVNAARCFFDAMPQRDVISCNAMMAGYVNNGCYNEALKVFHDMLG 362
           V+SW++M+DGYA++G++  AR  FD MP +DV++ N +MAGY  NG Y EAL++FH+M  
Sbjct: 287 VISWSNMIDGYAKLGDIKVARTLFDEMPDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQR 346

Query: 363 SAFALAPD 386
            +  L+PD
Sbjct: 347 QS-NLSPD 353



 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
 Frame = +3

Query: 102 NLMIDCCAKNGKMGTAQVLFDRMPERDVVSWASMVDGYARMGNVNAARCFFDAMPQRD-- 275
           N +I    + G +  A+ +FDRMP +D VS+ SM+DGY + G ++ AR  FD+MP  D  
Sbjct: 164 NCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMIDGYVKSGTIDLARELFDSMPLEDKN 223

Query: 276 VISCNAMMAGY 308
           +IS N+M+ G+
Sbjct: 224 LISWNSMLGGF 234


>gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
          Length = 617

 Score =  142 bits (357), Expect = 6e-32
 Identities = 68/128 (53%), Positives = 93/128 (72%)
 Frame = +3

Query: 3   WNTMISGYMKLENGFESARDLFDKMPDKDLVSWNLMIDCCAKNGKMGTAQVLFDRMPERD 182
           WN+MISGY +  +G + A  LF +MPDKDL+SWN MID   K+G++  A+ LFD MP RD
Sbjct: 227 WNSMISGYAQTSDGVDIASKLFSEMPDKDLISWNSMIDGYVKHGRIEDAKYLFDVMPRRD 286

Query: 183 VVSWASMVDGYARMGNVNAARCFFDAMPQRDVISCNAMMAGYVNNGCYNEALKVFHDMLG 362
           VV+W++M+DGYA++G V+ A+  FD MP RDV+S N+M+AGYV N    EAL++F DM  
Sbjct: 287 VVTWSTMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMIAGYVQNRYNMEALEIFSDMEK 346

Query: 363 SAFALAPD 386
            +  L+PD
Sbjct: 347 ESH-LSPD 353



 Score = 85.9 bits (211), Expect = 5e-15
 Identities = 52/121 (42%), Positives = 75/121 (61%), Gaps = 4/121 (3%)
 Frame = +3

Query: 6   NTMISGYMKLE-NGFESARDLFDKMPDKDLVSWNLMIDCCAKNGKMGTAQVLFDRMPE-- 176
           N +I  Y+K    GF  AR +FD+MP +D VS+N MID   K G   +A+ LFD MPE  
Sbjct: 164 NCLIGLYLKCGWLGF--ARQIFDRMPQRDSVSYNSMIDGYVKCGSTESARELFDLMPEEM 221

Query: 177 RDVVSWASMVDGYARMGN-VNAARCFFDAMPQRDVISCNAMMAGYVNNGCYNEALKVFHD 353
           ++++SW SM+ GYA+  + V+ A   F  MP +D+IS N+M+ GYV +G   +A  +F  
Sbjct: 222 KNLISWNSMISGYAQTSDGVDIASKLFSEMPDKDLISWNSMIDGYVKHGRIEDAKYLFDV 281

Query: 354 M 356
           M
Sbjct: 282 M 282



 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 39/93 (41%), Positives = 60/93 (64%), Gaps = 3/93 (3%)
 Frame = +3

Query: 87  DLVSWNLMIDCCAKNGKMGTAQVLFDRMPERDVVSWASMVDGYARMGNVNAARCFFDAMP 266
           DL   N +I    K G +G A+ +FDRMP+RD VS+ SM+DGY + G+  +AR  FD MP
Sbjct: 159 DLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSTESARELFDLMP 218

Query: 267 Q--RDVISCNAMMAGYV-NNGCYNEALKVFHDM 356
           +  +++IS N+M++GY   +   + A K+F +M
Sbjct: 219 EEMKNLISWNSMISGYAQTSDGVDIASKLFSEM 251