BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00025996
         (1003 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras...   321   2e-85
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]         321   2e-85
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   321   3e-85
sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymeras...   320   7e-85
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]   319   1e-84
ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   318   2e-84
ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   315   1e-83
dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymer...   313   9e-83
gb|EMJ26582.1| hypothetical protein PRUPE_ppa000780mg [Prunus pe...   288   2e-75
emb|CAA69305.1| mitochondrial single-subunit DNA-dependent RNA p...   279   1e-72
gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus pe...   277   4e-72
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   276   7e-72
ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/m...   273   8e-71
ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citr...   268   2e-69
ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citr...   268   2e-69
ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citr...   268   2e-69
ref|XP_006484275.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   268   3e-69
ref|XP_006437832.1| hypothetical protein CICLE_v10030633mg [Citr...   268   3e-69
gb|EOY03847.1| DNA/RNA polymerases superfamily protein [Theobrom...   267   4e-69
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras...   266   7e-69

>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial;
           AltName: Full=NictaRpoT1-tom; AltName: Full=T7
           bacteriophage-type single subunit RNA polymerase 1B;
           Flags: Precursor
          Length = 1002

 Score =  321 bits (823), Expect = 2e-85
 Identities = 186/327 (56%), Positives = 222/327 (67%), Gaps = 28/327 (8%)
 Frame = -2

Query: 930 MWRNLSRQSYLRKLKIFSESHPS-------FNAFYAVKSP-----------------QDS 823
           MWR +S+ +Y RK   F  SH S       +++ +    P                 Q+S
Sbjct: 1   MWRYISKHAYSRK---FRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTHPNLGLSQNS 57

Query: 822 IFIE---KTRSLEPQNELFFSQDLISWRRQSEVSFLKYAFPNDTFRHFGNT-RTRGYAAV 655
           IF     K R LE   E       +   + S  S +K  F     R  G+  R R Y + 
Sbjct: 58  IFSRISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRGSGSLGRLRSYGSA 117

Query: 654 AEALVSTSGSEEEVDEVQELIDEINKEINVKRSDIREQKQPKMVGGMGLGKYNSLRRRQI 475
           AEA+VSTS  EE++DE+QELI+E++KE    ++++ + KQPK +GGMG+GKYN LRRRQI
Sbjct: 118 AEAIVSTS--EEDIDEIQELIEEMDKENEALKANL-QPKQPKTIGGMGVGKYNFLRRRQI 174

Query: 474 KMETEAWEEAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKN 295
           K+ETEAWEEAAKEYQELLMDMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ LC EGKN
Sbjct: 175 KVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKN 234

Query: 294 RGAYAPYIDQLPADMMAVITMHKLMGLLMTGGCNGSARVVQAACHIGEAIEHEVRIHKFL 115
           RGAYAP+ DQLPA+MMAVITMHKLMGLLMTGG  GSARVVQAA +IGEAIEHE RIH+FL
Sbjct: 235 RGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFL 294

Query: 114 ENCKRKNALNRTCEEGPDPEAKEQERL 34
           E  K+ NAL+   EE P    KE+ERL
Sbjct: 295 EKTKKSNALSGDLEETPGDMMKERERL 321


>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
          Length = 1002

 Score =  321 bits (823), Expect = 2e-85
 Identities = 186/327 (56%), Positives = 222/327 (67%), Gaps = 28/327 (8%)
 Frame = -2

Query: 930 MWRNLSRQSYLRKLKIFSESHPS-------FNAFYAVKSP-----------------QDS 823
           MWR +S+ +Y RK   F  SH S       +++ +    P                 Q+S
Sbjct: 1   MWRYISKHAYSRK---FRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTHPNLGLSQNS 57

Query: 822 IFIE---KTRSLEPQNELFFSQDLISWRRQSEVSFLKYAFPNDTFRHFGNT-RTRGYAAV 655
           IF     K R LE   E       +   + S  S +K  F     R  G+  R R Y + 
Sbjct: 58  IFSRISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRGSGSLGRLRSYGSA 117

Query: 654 AEALVSTSGSEEEVDEVQELIDEINKEINVKRSDIREQKQPKMVGGMGLGKYNSLRRRQI 475
           AEA+VSTS  EE++DE+QELI+E++KE    ++++ + KQPK +GGMG+GKYN LRRRQI
Sbjct: 118 AEAIVSTS--EEDIDEIQELIEEMDKENEALKANL-QPKQPKTIGGMGVGKYNFLRRRQI 174

Query: 474 KMETEAWEEAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKN 295
           K+ETEAWEEAAKEYQELLMDMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ LC EGKN
Sbjct: 175 KVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKN 234

Query: 294 RGAYAPYIDQLPADMMAVITMHKLMGLLMTGGCNGSARVVQAACHIGEAIEHEVRIHKFL 115
           RGAYAP+ DQLPA+MMAVITMHKLMGLLMTGG  GSARVVQAA +IGEAIEHE RIH+FL
Sbjct: 235 RGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFL 294

Query: 114 ENCKRKNALNRTCEEGPDPEAKEQERL 34
           E  K+ NAL+   EE P    KE+ERL
Sbjct: 295 EKTKKSNALSGDLEETPGDMMKERERL 321


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
           vinifera]
          Length = 978

 Score =  321 bits (822), Expect = 3e-85
 Identities = 177/310 (57%), Positives = 216/310 (69%), Gaps = 11/310 (3%)
 Frame = -2

Query: 930 MWRNLSRQSYLRKLKIFSESHPSFNAFYAVKSPQDSIFIEKTRSLEPQNELFFSQDLISW 751
           MWRNL++ +Y R+L++ S+ H SF+            F +K R+LE Q+ +   + +   
Sbjct: 1   MWRNLAKHAYTRRLQLSSQ-HSSFSPSNCTSR---FYFPDKARALESQDHVNSLRPVAGL 56

Query: 750 RRQSEVSFLKYAFPNDTFRHFGNTRT-----------RGYAAVAEALVSTSGSEEEVDEV 604
           RR   +SF +       F   G T+T           +GYA+ AEA+ S       VDEV
Sbjct: 57  RRIGVLSFQQDELGRPGF---GVTKTPVNFFGLFGYQKGYASAAEAIASEEDMSG-VDEV 112

Query: 603 QELIDEINKEINVKRSDIREQKQPKMVGGMGLGKYNSLRRRQIKMETEAWEEAAKEYQEL 424
           QEL++E+NK   +       +KQPK++GG+  GK+N LRRRQIKMETEAWEEAAKEY+EL
Sbjct: 113 QELVEEVNKGDKL-------EKQPKLIGGVAQGKHNVLRRRQIKMETEAWEEAAKEYREL 165

Query: 423 LMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKNRGAYAPYIDQLPADMMA 244
           L DMCEQKLAPNLPYIKSLFLGWFEPLRD IAAEQDLCK+GKNR AYAPY D LPADMMA
Sbjct: 166 LSDMCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMA 225

Query: 243 VITMHKLMGLLMTGGCNGSARVVQAACHIGEAIEHEVRIHKFLENCKRKNALNRTCEEGP 64
           VITMHKLMGLLMTG  NGSARVVQAACHIGEAIEHEVRI +F+E  K+K+A +   + G 
Sbjct: 226 VITMHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGS 285

Query: 63  DPEAKEQERL 34
           +P  KEQE+L
Sbjct: 286 NPVTKEQEKL 295


>sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial;
           AltName: Full=NsRpoT-A; AltName: Full=T7
           bacteriophage-type single subunit RNA polymerase 1;
           Flags: Precursor gi|15824083|dbj|BAB69431.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 1002

 Score =  320 bits (819), Expect = 7e-85
 Identities = 185/327 (56%), Positives = 221/327 (67%), Gaps = 28/327 (8%)
 Frame = -2

Query: 930 MWRNLSRQSYLRKLKIFSESHPS-------FNAFYAVKSP-----------------QDS 823
           MWR +S+Q+Y RK   F  SH S       +++ +    P                 Q+S
Sbjct: 1   MWRYISKQAYSRK---FRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTNPNLGLSQNS 57

Query: 822 IFIE---KTRSLEPQNELFFSQDLISWRRQSEVSFLKYAFPNDTFRHFGNTR-TRGYAAV 655
           IF     K R LE   E       +   + S  S +K  F     R  G+    R Y + 
Sbjct: 58  IFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRSYGSA 117

Query: 654 AEALVSTSGSEEEVDEVQELIDEINKEINVKRSDIREQKQPKMVGGMGLGKYNSLRRRQI 475
           AEA+ STS  EE++DE+QELI+E+NKE    ++++ + KQPK +GGMG+GKYN LRRRQI
Sbjct: 118 AEAIASTS--EEDIDEIQELIEEMNKENEALKTNL-QPKQPKTIGGMGVGKYNLLRRRQI 174

Query: 474 KMETEAWEEAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKN 295
           K+ETEAWEEAAKEYQELLMDMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ LC EGKN
Sbjct: 175 KVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKN 234

Query: 294 RGAYAPYIDQLPADMMAVITMHKLMGLLMTGGCNGSARVVQAACHIGEAIEHEVRIHKFL 115
           RGAYAP+ DQLPA+MMAVITMHKLMGLLMTGG  GSARVVQAA HIGEAIEHE RIH+FL
Sbjct: 235 RGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIHRFL 294

Query: 114 ENCKRKNALNRTCEEGPDPEAKEQERL 34
           E  K+ NAL+   E+ P    KE+ER+
Sbjct: 295 EKTKKSNALSGDLEDTPGDIMKERERV 321


>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score =  319 bits (817), Expect = 1e-84
 Identities = 185/327 (56%), Positives = 220/327 (67%), Gaps = 28/327 (8%)
 Frame = -2

Query: 930 MWRNLSRQSYLRKLKIFSESHPS-------FNAFYAVKSP-----------------QDS 823
           MWR +S+ +Y RK   F  SH S       +++ +    P                 Q+S
Sbjct: 1   MWRYISKHAYSRK---FRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTNPNLGLSQNS 57

Query: 822 IFIE---KTRSLEPQNELFFSQDLISWRRQSEVSFLKYAFPNDTFRHFGNTR-TRGYAAV 655
           IF     K R LE   E       +   + S  S +K  F     R  G+    R Y + 
Sbjct: 58  IFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRSYGSA 117

Query: 654 AEALVSTSGSEEEVDEVQELIDEINKEINVKRSDIREQKQPKMVGGMGLGKYNSLRRRQI 475
           AEA+ STS  EE++DE+QELI+E+NKE    ++++ + KQPK +GGMG+GKYN LRRRQI
Sbjct: 118 AEAIASTS--EEDIDEIQELIEEMNKENEALKTNL-QPKQPKTIGGMGVGKYNLLRRRQI 174

Query: 474 KMETEAWEEAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKN 295
           K+ETEAWEEAAKEYQELLMDMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ LC EGKN
Sbjct: 175 KVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKN 234

Query: 294 RGAYAPYIDQLPADMMAVITMHKLMGLLMTGGCNGSARVVQAACHIGEAIEHEVRIHKFL 115
           RGAYAP+ DQLPA+MMAVITMHKLMGLLMTGG  GSARVVQAA HIGEAIEHE RIH+FL
Sbjct: 235 RGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIHRFL 294

Query: 114 ENCKRKNALNRTCEEGPDPEAKEQERL 34
           E  K+ NAL+   E+ P    KE+ERL
Sbjct: 295 EKTKKSNALSGDLEDTPGDIMKERERL 321


>ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like
           [Solanum tuberosum]
          Length = 993

 Score =  318 bits (815), Expect = 2e-84
 Identities = 186/321 (57%), Positives = 223/321 (69%), Gaps = 22/321 (6%)
 Frame = -2

Query: 930 MWRNLSRQSYLRKLK------------IFSESHPSFNAFYAV-KSP-----QDSIFIE-- 811
           MWR +S+Q+Y RKL+             F ++ P       + ++P     Q SIF    
Sbjct: 1   MWRYISKQAYSRKLRNTHDSDFLGFAQSFGKTRPLQGLCEEIYRNPNLGVSQSSIFTRVN 60

Query: 810 -KTRSLEPQNELFFSQDLISWRRQSEVSFLKYAFPNDTFRHFGNTRT-RGYAAVAEALVS 637
            K+R L+   E       + +   S  S +K       FR  G+    R Y + AEA+ S
Sbjct: 61  GKSRCLDGMCEDSCRNHYLGFSESSIFSRVK-----GDFRVCGSLGILRSYGSAAEAIAS 115

Query: 636 TSGSEEEVDEVQELIDEINKEINVKRSDIREQKQPKMVGGMGLGKYNSLRRRQIKMETEA 457
           TS  EE++DE+QELI+E+NKE    ++++ + KQPK VGGMG+GKYN LRRRQIK+ETEA
Sbjct: 116 TS--EEDIDEIQELIEEMNKENEALKTNL-QPKQPKTVGGMGIGKYNLLRRRQIKVETEA 172

Query: 456 WEEAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKNRGAYAP 277
           WE+AAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQ LC EGKNRGAYAP
Sbjct: 173 WEDAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAP 232

Query: 276 YIDQLPADMMAVITMHKLMGLLMTGGCNGSARVVQAACHIGEAIEHEVRIHKFLENCKRK 97
           + DQLPA+MMAVITMHKLMGLLMTGG +GSARVVQAA HIGEAIEHE RIH+FLE  K K
Sbjct: 233 FFDQLPAEMMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHEARIHRFLEKTK-K 291

Query: 96  NALNRTCEEGPDPEAKEQERL 34
           NAL+ + EE      KE+ERL
Sbjct: 292 NALDGSLEETAGDIMKERERL 312


>ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like
           [Solanum lycopersicum]
          Length = 993

 Score =  315 bits (808), Expect = 1e-83
 Identities = 185/321 (57%), Positives = 220/321 (68%), Gaps = 22/321 (6%)
 Frame = -2

Query: 930 MWRNLSRQSYLRKLKIFSESH-----PSFNAFYAVKS-------------PQDSIFIE-- 811
           MWR +S+Q Y RKL+   +S       SF     ++               Q SIF    
Sbjct: 1   MWRYISKQVYSRKLRNTHDSDFLGFAQSFRKTRPLQGLCEEGYRNPNLGVSQSSIFSRVN 60

Query: 810 -KTRSLEPQNELFFSQDLISWRRQSEVSFLKYAFPNDTFRHFGNTRT-RGYAAVAEALVS 637
            K+R L+   E       + +   S  S +K       FR  G+    R Y + AEA+ S
Sbjct: 61  GKSRCLDGMCEDSCRNHYLGFSESSIFSRVK-----GDFRVCGSLGVLRSYGSAAEAIAS 115

Query: 636 TSGSEEEVDEVQELIDEINKEINVKRSDIREQKQPKMVGGMGLGKYNSLRRRQIKMETEA 457
           TS  EE++DE+QELI+E+NKE    ++++ + KQPK VGGMG+GKYN LRRRQIK+ETEA
Sbjct: 116 TS--EEDIDEIQELIEEMNKENEALKTNL-QPKQPKTVGGMGIGKYNLLRRRQIKVETEA 172

Query: 456 WEEAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKNRGAYAP 277
           WE+AAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPL+DAIAAEQ LC EGKNRGAYAP
Sbjct: 173 WEDAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLKDAIAAEQKLCDEGKNRGAYAP 232

Query: 276 YIDQLPADMMAVITMHKLMGLLMTGGCNGSARVVQAACHIGEAIEHEVRIHKFLENCKRK 97
           + DQLPA+MMAVITMHKLMGLLMTGG +GSARVVQAA HIGEAIEHE RIH+FLE  K K
Sbjct: 233 FFDQLPAEMMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHEARIHRFLEKTK-K 291

Query: 96  NALNRTCEEGPDPEAKEQERL 34
           NAL+ + EE      KE+ERL
Sbjct: 292 NALDGSLEETAGDIMKERERL 312


>dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
           sylvestris]
          Length = 1002

 Score =  313 bits (801), Expect = 9e-83
 Identities = 183/327 (55%), Positives = 218/327 (66%), Gaps = 28/327 (8%)
 Frame = -2

Query: 930 MWRNLSRQSYLRKLKIFSESHPS-------FNAFYAVKSP-----------------QDS 823
           MWR +S+Q+Y RK   F  SH S       +++ +    P                 Q+S
Sbjct: 1   MWRYISKQAYSRK---FRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTNPNLGLSQNS 57

Query: 822 IFIE---KTRSLEPQNELFFSQDLISWRRQSEVSFLKYAFPNDTFRHFGNTR-TRGYAAV 655
           IF     K R LE   E       +   + S  S +K  F     R  G+    R Y + 
Sbjct: 58  IFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRSYGSA 117

Query: 654 AEALVSTSGSEEEVDEVQELIDEINKEINVKRSDIREQKQPKMVGGMGLGKYNSLRRRQI 475
           AEA+ STS  EE+ DE+QELI+E+NKE    ++++ + KQPK +GGMG+GKYN LRRRQI
Sbjct: 118 AEAIASTS--EEDTDEIQELIEEMNKENEALKTNL-QPKQPKTIGGMGVGKYNLLRRRQI 174

Query: 474 KMETEAWEEAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKN 295
           K+ETEAWEEAAKEYQELLMDMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ LC EGKN
Sbjct: 175 KVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKN 234

Query: 294 RGAYAPYIDQLPADMMAVITMHKLMGLLMTGGCNGSARVVQAACHIGEAIEHEVRIHKFL 115
           RGA AP+ DQLPA+MMAVITMHKLMG LMTGG  GSARVVQAA HIGEAIEHE RIH+FL
Sbjct: 235 RGACAPFFDQLPAEMMAVITMHKLMGWLMTGGGTGSARVVQAASHIGEAIEHEARIHRFL 294

Query: 114 ENCKRKNALNRTCEEGPDPEAKEQERL 34
           E  K+ NAL+   E+ P    KE+ER+
Sbjct: 295 EKTKKSNALSGDLEDTPGDIMKERERV 321


>gb|EMJ26582.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
          Length = 1006

 Score =  288 bits (737), Expect = 2e-75
 Identities = 161/315 (51%), Positives = 215/315 (68%), Gaps = 16/315 (5%)
 Frame = -2

Query: 930 MWRNLSRQSYLRKLKIFSESHPSFNAFYAVKSPQDSIFIEKTRSLEPQNELFFSQDLISW 751
           MWRNL++Q   RK  + S+SH    +  ++   Q+S F++K R  E +  +     ++ +
Sbjct: 1   MWRNLAKQVASRKTNLSSQSHFGSPSSTSMIFSQESSFLDKARHFEARKCINNRILVMGF 60

Query: 750 RRQSEVSFLK------------YAFPNDTFRHFGNTRTRGYAAVAEALVSTSGSEEEV-- 613
           R+  +++  K            Y +    F ++     +GYA+VAEA+ ST G E+    
Sbjct: 61  RQVGDMASQKEELGRCSSLNPSYPYGISGFCNYA----KGYASVAEAIASTDGEEDSSGS 116

Query: 612 DEVQELIDEINKEINVKRSDIREQKQPKMVGGMGLGKYNSLRRRQIKMETEAWEEAAKEY 433
           +E+QE+++++ +E N+  S  ++ K  ++V GMG+GKYN LR+RQIK+ETEAW+EAAKEY
Sbjct: 117 EEIQEMLEDLIRENNMVESHFKQPK--RVVVGMGVGKYNLLRKRQIKLETEAWQEAAKEY 174

Query: 432 QELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKNRGAYAPYIDQLPAD 253
           QELL DMCEQKLAPNLPYIKSLFLGWFEPLRDAIAA+QD CK+  +R ++APY D LPAD
Sbjct: 175 QELLADMCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQDSCKQPNSRQSHAPYFDHLPAD 234

Query: 252 MMAVITMHKLMGLLMT-GGCNGSARVVQAACHIGEAIEHEVRIHKFLENC-KRKNALNRT 79
            MAVITMHKLMGLLMT  G  GS RVVQAAC IGEAIEHEVRIH+FLE   K+KN +++ 
Sbjct: 235 KMAVITMHKLMGLLMTNNGGIGSVRVVQAACAIGEAIEHEVRIHRFLEKTKKKKNTIDKK 294

Query: 78  CEEGPDPEAKEQERL 34
            E    P   EQE+L
Sbjct: 295 AEADSVPVTIEQEKL 309


>emb|CAA69305.1| mitochondrial single-subunit DNA-dependent RNA polymerase
           [Chenopodium album]
          Length = 988

 Score =  279 bits (713), Expect = 1e-72
 Identities = 157/309 (50%), Positives = 192/309 (62%), Gaps = 10/309 (3%)
 Frame = -2

Query: 930 MWRNLSRQSYLRKLKIFSESHPSFNAFYAVKSPQDSIFIEKTRSLEPQNELFFSQDLISW 751
           MW+  S+   LRK++   E  PS N     +S QDS    K R    QN +     ++ +
Sbjct: 1   MWKKASKFEILRKIRNSGELKPSSNVSRWKESSQDSA---KIRQFLGQNSVNPRFPMLGF 57

Query: 750 RRQSEV----------SFLKYAFPNDTFRHFGNTRTRGYAAVAEALVSTSGSEEEVDEVQ 601
            R  E+          +F+ YA P   F  +  + +  YA  A A    + S EE DE++
Sbjct: 58  GRNGELLCRNSEMGGSNFMFYANPFGIFGFYAQSTSCSYATAAAAEEIVTASSEEDDEIR 117

Query: 600 ELIDEINKEINVKRSDIREQKQPKMVGGMGLGKYNSLRRRQIKMETEAWEEAAKEYQELL 421
           EL+DEINK   VK   IR ++   MV GM  G+YN LR+RQIK+ETEAW EAA+EYQELL
Sbjct: 118 ELVDEINKLERVKPQSIRRKEPINMVAGMTAGRYNVLRKRQIKVETEAWNEAAREYQELL 177

Query: 420 MDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKNRGAYAPYIDQLPADMMAV 241
            DMCEQKLAPNLPY+KSLFLGWFEPL+DAI A Q+ CK G+NR  Y    D+LPADMMAV
Sbjct: 178 ADMCEQKLAPNLPYMKSLFLGWFEPLKDAIKAHQEACKVGRNRPLYGECFDELPADMMAV 237

Query: 240 ITMHKLMGLLMTGGCNGSARVVQAACHIGEAIEHEVRIHKFLENCKRKNALNRTCEEGPD 61
           ITMHKLMGLLMTG  NG   V+QAA  IGEA+E E +I KFLE  K+K A N   E   D
Sbjct: 238 ITMHKLMGLLMTGSGNGGTTVIQAATQIGEAVEQEAKIRKFLEKSKKKPATNNNDE---D 294

Query: 60  PEAKEQERL 34
             AK Q+RL
Sbjct: 295 DSAKAQQRL 303


>gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
          Length = 1024

 Score =  277 bits (709), Expect = 4e-72
 Identities = 162/323 (50%), Positives = 214/323 (66%), Gaps = 11/323 (3%)
 Frame = -2

Query: 969 LLFVCSLTYIH*NMWRNLSRQSYLRKLKIFSESHPSFNAFYAVKSPQDSIFIEKTRSLEP 790
           L+F  + + I   +WRN ++Q+  RK +    S     A+  +   Q+S+F    +  E 
Sbjct: 23  LIFHKNPSMISTTVWRNFAKQAISRKQRFHINSQSFSRAYSLLGICQESVFPGNFKPFEL 82

Query: 789 QN--ELFFSQDLISWRRQSEVSFLKYAFPNDTFRH------FGNTRTRGYAAVAEALVST 634
            +   L FS+  + +R +  +S  +      +F        F     +GYA+VAEA+ ST
Sbjct: 83  SSCSSLRFSE--VGFRGKGAISSPEDCMCKPSFWSVRNPIWFNGFCPKGYASVAEAVSST 140

Query: 633 SGSEEE--VDEVQELIDEINKEINVKRSDIREQKQPKMVGGMGLGKYNSLRRRQIKMETE 460
              EE   VDEVQEL+ +++ E   + +  +++ +     GMG GKY+ L+RRQIK+ETE
Sbjct: 141 DVEEEVSVVDEVQELLQQMSIE-EKREAQYKQRTRQNRARGMGQGKYHMLKRRQIKIETE 199

Query: 459 AWEEAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKNRGAYA 280
           AWE AAKEY+EL+MDMCEQKLAPNLPY+KSLFLGWFEPLR+AI  EQDLC++GKN+ AYA
Sbjct: 200 AWERAAKEYRELMMDMCEQKLAPNLPYMKSLFLGWFEPLRNAIDKEQDLCRKGKNKTAYA 259

Query: 279 PYIDQLPADMMAVITMHKLMGLLMTGGCNGSARVVQAACHIGEAIEHEVRIHKFLENCKR 100
           PYIDQLPADMM+VITMHKLMGLLMTGG +G+ RVV AAC IGEAIE EVRIHKFLE   R
Sbjct: 260 PYIDQLPADMMSVITMHKLMGLLMTGGEHGTCRVVAAACTIGEAIEQEVRIHKFLE-MTR 318

Query: 99  KNALNRTCEEG-PDPEAKEQERL 34
           K  +++  E G  D   KE+E+L
Sbjct: 319 KKKVDKDQENGESDAAKKEREKL 341


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial [Vitis vinifera]
           gi|298204431|emb|CBI16911.3| unnamed protein product
           [Vitis vinifera]
          Length = 1035

 Score =  276 bits (707), Expect = 7e-72
 Identities = 163/314 (51%), Positives = 209/314 (66%), Gaps = 15/314 (4%)
 Frame = -2

Query: 930 MWRNLSRQSYLRKLK--IFSESHPSFNAFYAVKSPQDSIFIE--KTRSLEPQNELFFSQD 763
           MWRN+++++  R  +  ++ +S P    +  +   QD IF E  K  + EP +       
Sbjct: 40  MWRNIAKRAIPRAPRKCVYLDSQPLSRRYSFLGFSQDLIFPEIMKFGTFEPSSCSSSGFS 99

Query: 762 LISWRRQSEVSFLKYAFPNDTF------RHFGNTRTRGYAAVAEALVSTSGSEEEV---D 610
            + +RR  E+S  + A    +F        F     + YA+VAEA VS++  EE+V   D
Sbjct: 100 EMGFRRIGEISSREDAVGRPSFGCLRNQMGFSGFCPKSYASVAEA-VSSTDVEEDVSASD 158

Query: 609 EVQELIDEINKEINVKRSDIREQKQPKMVGGMGLGKYNSLRRRQIKMETEAWEEAAKEYQ 430
           E+QEL+ E+ KE   ++ + + +++ KM  GM  G+Y  LRRRQ+K+ETEAWE AAKEY+
Sbjct: 159 EIQELLGEMKKE-EKRQVNFKRREKLKMERGMEQGRYLRLRRRQVKIETEAWELAAKEYK 217

Query: 429 ELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKNRGAYAPYIDQLPADM 250
           ELLMDMCEQKLAPNLPY+KSLFLGWFEPLRDAI  EQ+LC+ GKN+ AYAPY DQLPADM
Sbjct: 218 ELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADM 277

Query: 249 MAVITMHKLMGLLMTGGCNGSARVVQAACHIGEAIEHEVRIHKFLENCKRKNALNRTCEE 70
           M+VITMHKL+GLLMTGG +GS RVVQAAC IG+AIE EVRIH FLE  KRK        E
Sbjct: 278 MSVITMHKLVGLLMTGGEHGSTRVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDKNVE 337

Query: 69  GP--DPEAKEQERL 34
           G   DP   EQE+L
Sbjct: 338 GGGFDPVIHEQEKL 351


>ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
           putative [Ricinus communis] gi|223546175|gb|EEF47677.1|
           DNA-directed RNA polymerase 2, chloroplast/mitochondrial
           precursor, putative [Ricinus communis]
          Length = 997

 Score =  273 bits (698), Expect = 8e-71
 Identities = 172/325 (52%), Positives = 206/325 (63%), Gaps = 26/325 (8%)
 Frame = -2

Query: 930 MWRNLSRQSYLRKLKI-FSESHPSFNAFYAVKSPQDSIFIEKTRSLEPQNELFFSQDLIS 754
           MWRN +R++ L   K+ FS      N        QD   ++K R  E Q  L      + 
Sbjct: 1   MWRNFARRTSLSSKKLNFSSDCTQLN--------QDLDILQKVRHPEAQTLLCSPYSFLG 52

Query: 753 WRRQSEVS-----FLKYAFPNDT----FRHFGNTRTRGYA-AVAEALVSTSGSE-EEVDE 607
            RR S +S     F+K +F N T    F HF     +GYA A A+ + ST  S+    DE
Sbjct: 53  SRRISGLSSQNHEFIKPSFTNLTNPFGFSHF---LFKGYATAAAQVIASTDESDFSGCDE 109

Query: 606 VQELIDEINKEINVKRSDIREQKQP----KMVGGMGLGKYNSLRRRQIKMETEAWEEAAK 439
           +QE I+EINK      +  R+Q+Q     K + GMG+GKY  L++RQIKMETEAWEEAA+
Sbjct: 110 LQEQIEEINKHHKKMDAHFRQQQQQQQRKKTIAGMGIGKYTILKKRQIKMETEAWEEAAR 169

Query: 438 EYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKNRGAYAPYIDQLP 259
           EYQELL DMCEQKLAPNLPYIKSLFLGWFEPLRDAIA EQ+L +E  N+ ++ PY D LP
Sbjct: 170 EYQELLTDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAKEQELSREKNNKLSHGPYFDALP 229

Query: 258 ADMMAVITMHKLMGLLM-TGGCNGSARVVQAACHIGEAIEHEVRIHKFLENCKRKNALNR 82
           ADMMAVITMHKLMGLLM T G NGS RVVQAAC +GEAIEHE RIH+FLE  K+K    +
Sbjct: 230 ADMMAVITMHKLMGLLMTTNGGNGSVRVVQAACAVGEAIEHEARIHRFLEKTKKKKKSTK 289

Query: 81  TCE-EG------PDPE--AKEQERL 34
             E EG       D E  AKEQE+L
Sbjct: 290 NEEPEGKLEPVTSDAEKLAKEQEKL 314


>ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
           gi|557533046|gb|ESR44229.1| hypothetical protein
           CICLE_v10010966mg [Citrus clementina]
          Length = 928

 Score =  268 bits (686), Expect = 2e-69
 Identities = 161/311 (51%), Positives = 200/311 (64%), Gaps = 12/311 (3%)
 Frame = -2

Query: 930 MWRNLSRQSYLRKLKIFSESHPSFNAFYAVKSPQDSIFIEKTR----SLEPQNELFFSQD 763
           MWRN+++Q+    LK      P   A+  +   QDSI  EK +     + P+        
Sbjct: 47  MWRNVAKQAISLHLK-----KPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEVGSG 101

Query: 762 LISWRRQSEVSFLKYAF---PNDTFRHFGNTRTRGYAAVAEALVSTSGSEEE--VDEVQE 598
            I      E    + +F    ND F        RGYA VAEA+ ST   E+   V+E+QE
Sbjct: 102 RIGEILNHEDYMGRTSFGVLKNDNF-----WCPRGYATVAEAVSSTDVEEDVSIVEEIQE 156

Query: 597 LIDEINKEINVKRSDIREQKQPKMVGGMGLGKYNSLRRRQIKMETEAWEEAAKEYQELLM 418
           L+ E+ KE   +  +   + + ++  GMG GKY  L+ RQ+K+ETEAWE+AA EY+ELLM
Sbjct: 157 LLQEMKKEEQREGENGGGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLM 216

Query: 417 DMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKNRGAYAPYIDQLPADMMAVI 238
           DMCEQKLAPNLPY+KSLFLGWFEPLRDAIA EQ+ C+  K++ AYAPY DQLPADMMAVI
Sbjct: 217 DMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVI 276

Query: 237 TMHKLMGLLMTGGCNGSARVVQAACHIGEAIEHEVRIHKFLENCKRKN-ALNRTCEEGPD 61
           TMHKLMGLLMTGG +G ARVVQAAC IG+AIE EVRIHKFLE  K+KN   N+  EEG +
Sbjct: 277 TMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDE 336

Query: 60  PE--AKEQERL 34
                 EQE+L
Sbjct: 337 SNTVTTEQEKL 347


>ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
           gi|557533045|gb|ESR44228.1| hypothetical protein
           CICLE_v10010966mg [Citrus clementina]
          Length = 1030

 Score =  268 bits (686), Expect = 2e-69
 Identities = 161/311 (51%), Positives = 200/311 (64%), Gaps = 12/311 (3%)
 Frame = -2

Query: 930 MWRNLSRQSYLRKLKIFSESHPSFNAFYAVKSPQDSIFIEKTR----SLEPQNELFFSQD 763
           MWRN+++Q+    LK      P   A+  +   QDSI  EK +     + P+        
Sbjct: 47  MWRNVAKQAISLHLK-----KPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEVGSG 101

Query: 762 LISWRRQSEVSFLKYAF---PNDTFRHFGNTRTRGYAAVAEALVSTSGSEEE--VDEVQE 598
            I      E    + +F    ND F        RGYA VAEA+ ST   E+   V+E+QE
Sbjct: 102 RIGEILNHEDYMGRTSFGVLKNDNF-----WCPRGYATVAEAVSSTDVEEDVSIVEEIQE 156

Query: 597 LIDEINKEINVKRSDIREQKQPKMVGGMGLGKYNSLRRRQIKMETEAWEEAAKEYQELLM 418
           L+ E+ KE   +  +   + + ++  GMG GKY  L+ RQ+K+ETEAWE+AA EY+ELLM
Sbjct: 157 LLQEMKKEEQREGENGGGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLM 216

Query: 417 DMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKNRGAYAPYIDQLPADMMAVI 238
           DMCEQKLAPNLPY+KSLFLGWFEPLRDAIA EQ+ C+  K++ AYAPY DQLPADMMAVI
Sbjct: 217 DMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVI 276

Query: 237 TMHKLMGLLMTGGCNGSARVVQAACHIGEAIEHEVRIHKFLENCKRKN-ALNRTCEEGPD 61
           TMHKLMGLLMTGG +G ARVVQAAC IG+AIE EVRIHKFLE  K+KN   N+  EEG +
Sbjct: 277 TMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDE 336

Query: 60  PE--AKEQERL 34
                 EQE+L
Sbjct: 337 SNTVTTEQEKL 347


>ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
           gi|557533044|gb|ESR44227.1| hypothetical protein
           CICLE_v10010966mg [Citrus clementina]
          Length = 933

 Score =  268 bits (686), Expect = 2e-69
 Identities = 161/311 (51%), Positives = 200/311 (64%), Gaps = 12/311 (3%)
 Frame = -2

Query: 930 MWRNLSRQSYLRKLKIFSESHPSFNAFYAVKSPQDSIFIEKTR----SLEPQNELFFSQD 763
           MWRN+++Q+    LK      P   A+  +   QDSI  EK +     + P+        
Sbjct: 47  MWRNVAKQAISLHLK-----KPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEVGSG 101

Query: 762 LISWRRQSEVSFLKYAF---PNDTFRHFGNTRTRGYAAVAEALVSTSGSEEE--VDEVQE 598
            I      E    + +F    ND F        RGYA VAEA+ ST   E+   V+E+QE
Sbjct: 102 RIGEILNHEDYMGRTSFGVLKNDNF-----WCPRGYATVAEAVSSTDVEEDVSIVEEIQE 156

Query: 597 LIDEINKEINVKRSDIREQKQPKMVGGMGLGKYNSLRRRQIKMETEAWEEAAKEYQELLM 418
           L+ E+ KE   +  +   + + ++  GMG GKY  L+ RQ+K+ETEAWE+AA EY+ELLM
Sbjct: 157 LLQEMKKEEQREGENGGGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLM 216

Query: 417 DMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKNRGAYAPYIDQLPADMMAVI 238
           DMCEQKLAPNLPY+KSLFLGWFEPLRDAIA EQ+ C+  K++ AYAPY DQLPADMMAVI
Sbjct: 217 DMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVI 276

Query: 237 TMHKLMGLLMTGGCNGSARVVQAACHIGEAIEHEVRIHKFLENCKRKN-ALNRTCEEGPD 61
           TMHKLMGLLMTGG +G ARVVQAAC IG+AIE EVRIHKFLE  K+KN   N+  EEG +
Sbjct: 277 TMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDE 336

Query: 60  PE--AKEQERL 34
                 EQE+L
Sbjct: 337 SNTVTTEQEKL 347


>ref|XP_006484275.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
           [Citrus sinensis]
          Length = 980

 Score =  268 bits (684), Expect = 3e-69
 Identities = 163/308 (52%), Positives = 194/308 (62%), Gaps = 9/308 (2%)
 Frame = -2

Query: 930 MWRNLSRQSYLRKLKIFSESHPSFNAFYAVKSPQDSIFIEKTRSLEPQNELFFSQDLISW 751
           MWRNL+RQS  R  K FS S          K  Q + F++K  SLE Q  L  S  L+ +
Sbjct: 1   MWRNLARQSSTRNFK-FSPS----------KVSQTTNFLKKITSLETQTLLDSSCPLLGF 49

Query: 750 RRQSEVSFLKYAFPNDTFRH----FGNTRTRGYAAVAEALVSTS---GSEEEVDEVQELI 592
           RR S +S  K       F      FG   +R YA+ AEA+ S S   GSEE    VQELI
Sbjct: 50  RRTSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEE----VQELI 105

Query: 591 DEIN-KEINVKRSDIREQKQPKMVG-GMGLGKYNSLRRRQIKMETEAWEEAAKEYQELLM 418
           D+ N K +++  S     KQPK  G GMG  KY  L+RRQIK+ETEAWE+AAKEYQ+LL 
Sbjct: 106 DQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLA 165

Query: 417 DMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKNRGAYAPYIDQLPADMMAVI 238
           DMCEQKLAPNLPY+KSLFLGWFEPLRDAIA +Q   ++      YAPY + LPADMMAVI
Sbjct: 166 DMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVI 225

Query: 237 TMHKLMGLLMTGGCNGSARVVQAACHIGEAIEHEVRIHKFLENCKRKNALNRTCEEGPDP 58
           TMHKL+GLLMT    G  RVVQAAC IGEAIE+E RI  F E+ K+KNA +   E   +P
Sbjct: 226 TMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIRSFFESTKKKNATDNNLEGDSEP 283

Query: 57  EAKEQERL 34
              + E+L
Sbjct: 284 VTNDPEKL 291


>ref|XP_006437832.1| hypothetical protein CICLE_v10030633mg [Citrus clementina]
           gi|557540028|gb|ESR51072.1| hypothetical protein
           CICLE_v10030633mg [Citrus clementina]
          Length = 980

 Score =  268 bits (684), Expect = 3e-69
 Identities = 163/308 (52%), Positives = 194/308 (62%), Gaps = 9/308 (2%)
 Frame = -2

Query: 930 MWRNLSRQSYLRKLKIFSESHPSFNAFYAVKSPQDSIFIEKTRSLEPQNELFFSQDLISW 751
           MWRNL+RQS  R  K FS S          K  Q + F++K  SLE Q  L  S  L+ +
Sbjct: 1   MWRNLARQSSTRNFK-FSPS----------KVSQTTNFLKKITSLETQTLLDSSCPLLGF 49

Query: 750 RRQSEVSFLKYAFPNDTFRH----FGNTRTRGYAAVAEALVSTS---GSEEEVDEVQELI 592
           RR S +S  K       F      FG   +R YA+ AEA+ S S   GSEE    VQELI
Sbjct: 50  RRTSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEE----VQELI 105

Query: 591 DEIN-KEINVKRSDIREQKQPKMVG-GMGLGKYNSLRRRQIKMETEAWEEAAKEYQELLM 418
           D+ N K +++  S     KQPK  G GMG  KY  L+RRQIK+ETEAWE+AAKEYQ+LL 
Sbjct: 106 DQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLA 165

Query: 417 DMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKNRGAYAPYIDQLPADMMAVI 238
           DMCEQKLAPNLPY+KSLFLGWFEPLRDAIA +Q   ++      YAPY + LPADMMAVI
Sbjct: 166 DMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVI 225

Query: 237 TMHKLMGLLMTGGCNGSARVVQAACHIGEAIEHEVRIHKFLENCKRKNALNRTCEEGPDP 58
           TMHKL+GLLMT    G  RVVQAAC IGEAIE+E RI  F E+ K+KNA +   E   +P
Sbjct: 226 TMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIRSFFESTKKKNATDNNLEGDSEP 283

Query: 57  EAKEQERL 34
              + E+L
Sbjct: 284 VTNDPEKL 291


>gb|EOY03847.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 1100

 Score =  267 bits (683), Expect = 4e-69
 Identities = 165/317 (52%), Positives = 208/317 (65%), Gaps = 18/317 (5%)
 Frame = -2

Query: 930 MWRNLSRQSYLRKLKIFSESHPSFNAFYA-VKSPQDSIFIEKTRSLEPQNELFFSQDL-- 760
           MWRN+++ +  R+    + S   F   Y+ + + QDSIF EK++    +   F S     
Sbjct: 42  MWRNIAKHAISRR----THSFQCFARTYSFLGTSQDSIFHEKSKFRGLKFGSFCSNSRFL 97

Query: 759 -ISWRRQSEV-SFLKYAFPNDTFRHFGNTRT---------RGYAAVAEALVSTSGSEEE- 616
            +  RR  EV + ++Y         FG+ R          RGY +VAEA+ ST   E+  
Sbjct: 98  DMGGRRIGEVLTNVEYIGKQS----FGSPRNEIGCSGLCPRGYVSVAEAVSSTDVEEDVS 153

Query: 615 -VDEVQELIDEINKEINVKRSDIREQKQPKMVGGMGLGKYNSLRRRQIKMETEAWEEAAK 439
            V+E++EL+DE+ KE   +  + R + Q  +  GMG  KY  LRRRQ+K+ETEAWE+AAK
Sbjct: 154 VVEEIKELLDEMKKEQRRETGNRRRRCQI-IERGMGESKYRFLRRRQVKIETEAWEQAAK 212

Query: 438 EYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKNRGAYAPYIDQLP 259
           EY+ELLMDMCE KLAPNLPYIKSLFLGWFEPLRDAI  EQ+L + GK R  YA Y+DQLP
Sbjct: 213 EYRELLMDMCEHKLAPNLPYIKSLFLGWFEPLRDAIIKEQELYRLGKLRAGYAGYLDQLP 272

Query: 258 ADMMAVITMHKLMGLLMTGGCNGSARVVQAACHIGEAIEHEVRIHKFLENCKRKNALNRT 79
           ADM AVITMHKLMGLLMTGG +G ARVVQAAC IG+AIE EVRIHKFLE  K+K    + 
Sbjct: 273 ADMTAVITMHKLMGLLMTGGEHGCARVVQAACLIGDAIEQEVRIHKFLEKTKKKRVDKKN 332

Query: 78  CEEG--PDPEAKEQERL 34
            +EG  P+ E KEQE+L
Sbjct: 333 EDEGDKPNAEIKEQEKL 349


>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial; AltName:
           Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
           single subunit RNA polymerase 2B; Flags: Precursor
           gi|21425665|emb|CAC95020.1| mitochondrial and
           chloroplast RNA polymerase [Nicotiana tabacum]
          Length = 1021

 Score =  266 bits (681), Expect = 7e-69
 Identities = 160/310 (51%), Positives = 208/310 (67%), Gaps = 11/310 (3%)
 Frame = -2

Query: 930 MWRNLSRQSYLRKLK--IFSESHPSFNAFYAVKSPQDSIFIEKT--RSLEP---QNELFF 772
           MWRN+ +Q   R  +  +FS  + +++    +   QDS+F + T  RSL P    N +  
Sbjct: 35  MWRNIIKQLSSRTPQKLLFSSKNRTYSF---LGFGQDSVFKDNTKFRSLIPISCSNIVMG 91

Query: 771 SQDLISWRRQSEVSFLKYAFPNDTFRHFGNTRTRGYAAVAEAL-VSTSGSEEEV---DEV 604
            Q+L  +    E  FL      +          + YA+VAEA+ VS++ +EE+V   DEV
Sbjct: 92  FQNLGEYLPGDE--FLSRPLLKNQVNSNDFCCRKSYASVAEAVAVSSTDAEEDVSVVDEV 149

Query: 603 QELIDEINKEINVKRSDIREQKQPKMVGGMGLGKYNSLRRRQIKMETEAWEEAAKEYQEL 424
           QEL+ E+ KE   K+   R +KQ  +  GMG  KY +L+RRQ+K+ETEAWE+AAKEY+EL
Sbjct: 150 QELLTELKKE-EKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKEL 208

Query: 423 LMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKNRGAYAPYIDQLPADMMA 244
           L DMCEQKLAPNLPY+KSLFLGWFEPLRD IA EQ+LC +GK++ AYA Y+ QLPADMMA
Sbjct: 209 LFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQLPADMMA 268

Query: 243 VITMHKLMGLLMTGGCNGSARVVQAACHIGEAIEHEVRIHKFLENCKRKNALNRTCEEGP 64
           VITMHKLMGLLMTGG +G+ARVVQAA  IG+AIE EVRIH FLE  K++ A     +E  
Sbjct: 269 VITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDG 328

Query: 63  DPEAKEQERL 34
           +   +EQE+L
Sbjct: 329 EHVTQEQEKL 338