BLASTX nr result
ID: Rehmannia23_contig00025743
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia23_contig00025743
(323 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006480405.1| PREDICTED: U5 small nuclear ribonucleoprotei... 59 1e-11
ref|XP_006428571.1| hypothetical protein CICLE_v100108902mg, par... 59 1e-11
ref|XP_004165711.1| PREDICTED: LOW QUALITY PROTEIN: U5 small nuc... 61 2e-11
ref|XP_004147618.1| PREDICTED: U5 small nuclear ribonucleoprotei... 61 2e-11
ref|XP_006350847.1| PREDICTED: U5 small nuclear ribonucleoprotei... 64 3e-11
ref|XP_004242515.1| PREDICTED: U5 small nuclear ribonucleoprotei... 64 3e-11
ref|XP_006295588.1| hypothetical protein CARUB_v10024696mg [Caps... 60 6e-11
ref|XP_002893142.1| EMB1507 [Arabidopsis lyrata subsp. lyrata] g... 58 6e-11
ref|NP_173520.1| putative U5 small nuclear ribonucleoprotein hel... 57 6e-11
gb|AAL31915.1|AF419583_1 At1g20960/F9H16_5 [Arabidopsis thaliana... 57 6e-11
ref|XP_006416344.1| hypothetical protein EUTSA_v10006525mg [Eutr... 60 8e-11
ref|XP_006306573.1| hypothetical protein CARUB_v10008066mg [Caps... 58 2e-10
ref|XP_006849925.1| hypothetical protein AMTR_s00022p00114710 [A... 59 3e-10
ref|NP_181756.1| U5 small nuclear ribonucleoprotein helicase [Ar... 60 4e-10
ref|XP_002518663.1| U520, putative [Ricinus communis] gi|2235420... 59 4e-10
gb|AAL24152.2| putative ATP-dependent RNA helicase [Arabidopsis ... 60 4e-10
ref|NP_189529.1| uncharacterized protein [Arabidopsis thaliana] ... 55 4e-10
gb|EOY19724.1| U5 small nuclear ribonucleoprotein helicase, puta... 59 5e-10
gb|EOY19725.1| U5 small nuclear ribonucleoprotein helicase, puta... 59 5e-10
dbj|BAD95221.1| putative ATP-dependent RNA helicase [Arabidopsis... 57 6e-10
>ref|XP_006480405.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
isoform X1 [Citrus sinensis]
gi|568853532|ref|XP_006480406.1| PREDICTED: U5 small
nuclear ribonucleoprotein 200 kDa helicase-like isoform
X2 [Citrus sinensis]
Length = 2179
Score = 58.9 bits (141), Expect(2) = 1e-11
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = -2
Query: 280 ERKHTLYFMCDSYLGCDQEYSFTVDVKEAATE 185
++ +TLYFMCDSY+GCDQEY+FTVDVKEA E
Sbjct: 2148 KKTYTLYFMCDSYMGCDQEYAFTVDVKEAGEE 2179
Score = 36.2 bits (82), Expect(2) = 1e-11
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = -1
Query: 323 KSRVKLDFTAPTEPGKKTHSVF 258
KSRVKLDF AP E GKKT++++
Sbjct: 2133 KSRVKLDFAAPAEAGKKTYTLY 2154
>ref|XP_006428571.1| hypothetical protein CICLE_v100108902mg, partial [Citrus
clementina] gi|557530628|gb|ESR41811.1| hypothetical
protein CICLE_v100108902mg, partial [Citrus clementina]
Length = 249
Score = 58.9 bits (141), Expect(2) = 1e-11
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = -2
Query: 280 ERKHTLYFMCDSYLGCDQEYSFTVDVKEAATE 185
++ +TLYFMCDSY+GCDQEY+FTVDVKEA E
Sbjct: 218 KKTYTLYFMCDSYMGCDQEYAFTVDVKEAGEE 249
Score = 36.2 bits (82), Expect(2) = 1e-11
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = -1
Query: 323 KSRVKLDFTAPTEPGKKTHSVF 258
KSRVKLDF AP E GKKT++++
Sbjct: 203 KSRVKLDFAAPAEAGKKTYTLY 224
>ref|XP_004165711.1| PREDICTED: LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein
200 kDa helicase-like [Cucumis sativus]
Length = 2175
Score = 61.2 bits (147), Expect(2) = 2e-11
Identities = 26/33 (78%), Positives = 30/33 (90%)
Frame = -2
Query: 280 ERKHTLYFMCDSYLGCDQEYSFTVDVKEAATED 182
++ +TLYFMCDSYLGCDQEYSFTVDVK+AA D
Sbjct: 2140 KKSYTLYFMCDSYLGCDQEYSFTVDVKDAAAFD 2172
Score = 33.1 bits (74), Expect(2) = 2e-11
Identities = 12/22 (54%), Positives = 20/22 (90%)
Frame = -1
Query: 323 KSRVKLDFTAPTEPGKKTHSVF 258
K++VKLDFTAP + GKK+++++
Sbjct: 2125 KAKVKLDFTAPADTGKKSYTLY 2146
>ref|XP_004147618.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
[Cucumis sativus]
Length = 2175
Score = 61.2 bits (147), Expect(2) = 2e-11
Identities = 26/33 (78%), Positives = 30/33 (90%)
Frame = -2
Query: 280 ERKHTLYFMCDSYLGCDQEYSFTVDVKEAATED 182
++ +TLYFMCDSYLGCDQEYSFTVDVK+AA D
Sbjct: 2140 KKSYTLYFMCDSYLGCDQEYSFTVDVKDAAAFD 2172
Score = 33.1 bits (74), Expect(2) = 2e-11
Identities = 12/22 (54%), Positives = 20/22 (90%)
Frame = -1
Query: 323 KSRVKLDFTAPTEPGKKTHSVF 258
K++VKLDFTAP + GKK+++++
Sbjct: 2125 KAKVKLDFTAPADTGKKSYTLY 2146
>ref|XP_006350847.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
[Solanum tuberosum]
Length = 2174
Score = 63.9 bits (154), Expect(2) = 3e-11
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = -2
Query: 277 RKHTLYFMCDSYLGCDQEYSFTVDVKEAATEDNS 176
R +TLYFMCDSYLGCDQEY+FT+DVKEA ED+S
Sbjct: 2141 RNYTLYFMCDSYLGCDQEYNFTLDVKEAMAEDDS 2174
Score = 29.6 bits (65), Expect(2) = 3e-11
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -1
Query: 323 KSRVKLDFTAPTEPGKKTHSVF 258
KS+VKLDF AP E G + ++++
Sbjct: 2125 KSKVKLDFAAPAEAGTRNYTLY 2146
>ref|XP_004242515.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
[Solanum lycopersicum]
Length = 2174
Score = 63.9 bits (154), Expect(2) = 3e-11
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = -2
Query: 277 RKHTLYFMCDSYLGCDQEYSFTVDVKEAATEDNS 176
R +TLYFMCDSYLGCDQEY+FT+DVKEA ED+S
Sbjct: 2141 RNYTLYFMCDSYLGCDQEYNFTLDVKEAMAEDDS 2174
Score = 29.6 bits (65), Expect(2) = 3e-11
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -1
Query: 323 KSRVKLDFTAPTEPGKKTHSVF 258
KS+VKLDF AP E G + ++++
Sbjct: 2125 KSKVKLDFAAPAEAGMRNYTLY 2146
>ref|XP_006295588.1| hypothetical protein CARUB_v10024696mg [Capsella rubella]
gi|482564296|gb|EOA28486.1| hypothetical protein
CARUB_v10024696mg [Capsella rubella]
Length = 2176
Score = 59.7 bits (143), Expect(2) = 6e-11
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = -2
Query: 280 ERKHTLYFMCDSYLGCDQEYSFTVDVKEAATEDN 179
E+ +TLYFMCDSY GCDQEYSFTVDVK++ +D+
Sbjct: 2139 EKSYTLYFMCDSYFGCDQEYSFTVDVKDSDAKDD 2172
Score = 32.7 bits (73), Expect(2) = 6e-11
Identities = 11/22 (50%), Positives = 20/22 (90%)
Frame = -1
Query: 323 KSRVKLDFTAPTEPGKKTHSVF 258
K++VKL+F PTEPG+K+++++
Sbjct: 2124 KAKVKLEFAVPTEPGEKSYTLY 2145
>ref|XP_002893142.1| EMB1507 [Arabidopsis lyrata subsp. lyrata]
gi|297338984|gb|EFH69401.1| EMB1507 [Arabidopsis lyrata
subsp. lyrata]
Length = 2171
Score = 57.8 bits (138), Expect(2) = 6e-11
Identities = 24/34 (70%), Positives = 29/34 (85%)
Frame = -2
Query: 280 ERKHTLYFMCDSYLGCDQEYSFTVDVKEAATEDN 179
E+ +TLYFMCDSYLGCDQEYSF+VDVK + D+
Sbjct: 2135 EKSYTLYFMCDSYLGCDQEYSFSVDVKGSGAGDH 2168
Score = 34.7 bits (78), Expect(2) = 6e-11
Identities = 12/22 (54%), Positives = 21/22 (95%)
Frame = -1
Query: 323 KSRVKLDFTAPTEPGKKTHSVF 258
K++VKLDFT P+EPG+K+++++
Sbjct: 2120 KAKVKLDFTVPSEPGEKSYTLY 2141
>ref|NP_173520.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis
thaliana] gi|334182730|ref|NP_001185050.1| putative U5
small nuclear ribonucleoprotein helicase [Arabidopsis
thaliana] gi|4836892|gb|AAD30595.1|AC007369_5 Putative
RNA helicase [Arabidopsis thaliana]
gi|332191925|gb|AEE30046.1| putative U5 small nuclear
ribonucleoprotein helicase [Arabidopsis thaliana]
gi|332191926|gb|AEE30047.1| putative U5 small nuclear
ribonucleoprotein helicase [Arabidopsis thaliana]
Length = 2171
Score = 57.4 bits (137), Expect(2) = 6e-11
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = -2
Query: 280 ERKHTLYFMCDSYLGCDQEYSFTVDVKEAATED 182
E+ +TLYFMCDSYLGCDQEYSF+VDVK + D
Sbjct: 2135 EKSYTLYFMCDSYLGCDQEYSFSVDVKGSGAGD 2167
Score = 35.0 bits (79), Expect(2) = 6e-11
Identities = 13/22 (59%), Positives = 21/22 (95%)
Frame = -1
Query: 323 KSRVKLDFTAPTEPGKKTHSVF 258
K +VKLDFTAP+EPG+K+++++
Sbjct: 2120 KVKVKLDFTAPSEPGEKSYTLY 2141
>gb|AAL31915.1|AF419583_1 At1g20960/F9H16_5 [Arabidopsis thaliana] gi|21360465|gb|AAM47348.1|
At1g20960/F9H16_5 [Arabidopsis thaliana]
Length = 569
Score = 57.4 bits (137), Expect(2) = 6e-11
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = -2
Query: 280 ERKHTLYFMCDSYLGCDQEYSFTVDVKEAATED 182
E+ +TLYFMCDSYLGCDQEYSF+VDVK + D
Sbjct: 533 EKSYTLYFMCDSYLGCDQEYSFSVDVKGSGAGD 565
Score = 35.0 bits (79), Expect(2) = 6e-11
Identities = 13/22 (59%), Positives = 21/22 (95%)
Frame = -1
Query: 323 KSRVKLDFTAPTEPGKKTHSVF 258
K +VKLDFTAP+EPG+K+++++
Sbjct: 518 KVKVKLDFTAPSEPGEKSYTLY 539
>ref|XP_006416344.1| hypothetical protein EUTSA_v10006525mg [Eutrema salsugineum]
gi|557094115|gb|ESQ34697.1| hypothetical protein
EUTSA_v10006525mg [Eutrema salsugineum]
Length = 2160
Score = 60.5 bits (145), Expect(2) = 8e-11
Identities = 25/34 (73%), Positives = 30/34 (88%)
Frame = -2
Query: 280 ERKHTLYFMCDSYLGCDQEYSFTVDVKEAATEDN 179
E+ +TLYFMCDSYLGCDQEYSF+VDVKE+ D+
Sbjct: 2124 EKSYTLYFMCDSYLGCDQEYSFSVDVKESGAGDH 2157
Score = 31.6 bits (70), Expect(2) = 8e-11
Identities = 11/22 (50%), Positives = 19/22 (86%)
Frame = -1
Query: 323 KSRVKLDFTAPTEPGKKTHSVF 258
K +VKLDF P+EPG+K+++++
Sbjct: 2109 KLKVKLDFAVPSEPGEKSYTLY 2130
>ref|XP_006306573.1| hypothetical protein CARUB_v10008066mg [Capsella rubella]
gi|482575284|gb|EOA39471.1| hypothetical protein
CARUB_v10008066mg [Capsella rubella]
Length = 2170
Score = 57.8 bits (138), Expect(2) = 2e-10
Identities = 24/34 (70%), Positives = 29/34 (85%)
Frame = -2
Query: 280 ERKHTLYFMCDSYLGCDQEYSFTVDVKEAATEDN 179
E+ +TLYFMCDSYLGCDQEYSF+VDVK + D+
Sbjct: 2134 EKSYTLYFMCDSYLGCDQEYSFSVDVKGSGAGDH 2167
Score = 33.1 bits (74), Expect(2) = 2e-10
Identities = 12/22 (54%), Positives = 20/22 (90%)
Frame = -1
Query: 323 KSRVKLDFTAPTEPGKKTHSVF 258
K++VKLDFT PTE G+K+++++
Sbjct: 2119 KAKVKLDFTVPTESGEKSYTLY 2140
>ref|XP_006849925.1| hypothetical protein AMTR_s00022p00114710 [Amborella trichopoda]
gi|548853523|gb|ERN11506.1| hypothetical protein
AMTR_s00022p00114710 [Amborella trichopoda]
Length = 2171
Score = 59.3 bits (142), Expect(2) = 3e-10
Identities = 24/33 (72%), Positives = 30/33 (90%)
Frame = -2
Query: 280 ERKHTLYFMCDSYLGCDQEYSFTVDVKEAATED 182
++++TLYFMCDSYLGCDQEY+FT+DVKEA D
Sbjct: 2134 KKEYTLYFMCDSYLGCDQEYNFTIDVKEAMEGD 2166
Score = 30.8 bits (68), Expect(2) = 3e-10
Identities = 12/22 (54%), Positives = 19/22 (86%)
Frame = -1
Query: 323 KSRVKLDFTAPTEPGKKTHSVF 258
KS+VKL+F AP+E GKK ++++
Sbjct: 2119 KSKVKLEFPAPSEVGKKEYTLY 2140
>ref|NP_181756.1| U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana]
gi|2673917|gb|AAB88651.1| putative ATP-dependent RNA
helicase [Arabidopsis thaliana]
gi|330255004|gb|AEC10098.1| U5 small nuclear
ribonucleoprotein helicase [Arabidopsis thaliana]
Length = 2172
Score = 60.5 bits (145), Expect(2) = 4e-10
Identities = 25/34 (73%), Positives = 30/34 (88%)
Frame = -2
Query: 280 ERKHTLYFMCDSYLGCDQEYSFTVDVKEAATEDN 179
E+ +TLYFMCDSYLGCDQEYSFTVDVK++ D+
Sbjct: 2136 EKSYTLYFMCDSYLGCDQEYSFTVDVKDSDAADH 2169
Score = 29.3 bits (64), Expect(2) = 4e-10
Identities = 10/22 (45%), Positives = 19/22 (86%)
Frame = -1
Query: 323 KSRVKLDFTAPTEPGKKTHSVF 258
K++VKL+F PTE G+K+++++
Sbjct: 2121 KAQVKLEFAVPTETGEKSYTLY 2142
>ref|XP_002518663.1| U520, putative [Ricinus communis] gi|223542044|gb|EEF43588.1| U520,
putative [Ricinus communis]
Length = 1809
Score = 58.5 bits (140), Expect(2) = 4e-10
Identities = 25/32 (78%), Positives = 27/32 (84%)
Frame = -2
Query: 277 RKHTLYFMCDSYLGCDQEYSFTVDVKEAATED 182
+ +TLYFMCDSYLGCDQEYSF VDVKEA D
Sbjct: 1776 KSYTLYFMCDSYLGCDQEYSFNVDVKEAGGPD 1807
Score = 31.2 bits (69), Expect(2) = 4e-10
Identities = 11/22 (50%), Positives = 20/22 (90%)
Frame = -1
Query: 323 KSRVKLDFTAPTEPGKKTHSVF 258
KS+VKL+F AP+E G+K+++++
Sbjct: 1760 KSKVKLEFAAPSETGRKSYTLY 1781
>gb|AAL24152.2| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
Length = 617
Score = 60.5 bits (145), Expect(2) = 4e-10
Identities = 25/34 (73%), Positives = 30/34 (88%)
Frame = -2
Query: 280 ERKHTLYFMCDSYLGCDQEYSFTVDVKEAATEDN 179
E+ +TLYFMCDSYLGCDQEYSFTVDVK++ D+
Sbjct: 581 EKSYTLYFMCDSYLGCDQEYSFTVDVKDSDAADH 614
Score = 29.3 bits (64), Expect(2) = 4e-10
Identities = 10/22 (45%), Positives = 19/22 (86%)
Frame = -1
Query: 323 KSRVKLDFTAPTEPGKKTHSVF 258
K++VKL+F PTE G+K+++++
Sbjct: 566 KAQVKLEFAVPTETGEKSYTLY 587
>ref|NP_189529.1| uncharacterized protein [Arabidopsis thaliana]
gi|332643978|gb|AEE77499.1| uncharacterized protein
AT3G28870 [Arabidopsis thaliana]
Length = 355
Score = 55.1 bits (131), Expect(2) = 4e-10
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = -2
Query: 280 ERKHTLYFMCDSYLGCDQEYSFTVDVKEAATEDN 179
E+ +TLYFMCDSYLGCDQEYSF+VD K + D+
Sbjct: 319 EKSYTLYFMCDSYLGCDQEYSFSVDDKGSGVGDH 352
Score = 34.7 bits (78), Expect(2) = 4e-10
Identities = 12/22 (54%), Positives = 21/22 (95%)
Frame = -1
Query: 323 KSRVKLDFTAPTEPGKKTHSVF 258
K++VKLDFT P+EPG+K+++++
Sbjct: 304 KAKVKLDFTVPSEPGEKSYTLY 325
>gb|EOY19724.1| U5 small nuclear ribonucleoprotein helicase, putative isoform 1
[Theobroma cacao]
Length = 2176
Score = 59.3 bits (142), Expect(2) = 5e-10
Identities = 25/33 (75%), Positives = 29/33 (87%)
Frame = -2
Query: 280 ERKHTLYFMCDSYLGCDQEYSFTVDVKEAATED 182
++ +TLYFMCDSYLGCDQEY+FTVD KEAA D
Sbjct: 2138 KKAYTLYFMCDSYLGCDQEYNFTVDAKEAAGPD 2170
Score = 30.0 bits (66), Expect(2) = 5e-10
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -1
Query: 323 KSRVKLDFTAPTEPGKKTHSVF 258
K++VKL+F APTE KK ++++
Sbjct: 2123 KAKVKLEFAAPTEAAKKAYTLY 2144
>gb|EOY19725.1| U5 small nuclear ribonucleoprotein helicase, putative isoform 2
[Theobroma cacao]
Length = 2062
Score = 59.3 bits (142), Expect(2) = 5e-10
Identities = 25/33 (75%), Positives = 29/33 (87%)
Frame = -2
Query: 280 ERKHTLYFMCDSYLGCDQEYSFTVDVKEAATED 182
++ +TLYFMCDSYLGCDQEY+FTVD KEAA D
Sbjct: 2024 KKAYTLYFMCDSYLGCDQEYNFTVDAKEAAGPD 2056
Score = 30.0 bits (66), Expect(2) = 5e-10
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -1
Query: 323 KSRVKLDFTAPTEPGKKTHSVF 258
K++VKL+F APTE KK ++++
Sbjct: 2009 KAKVKLEFAAPTEAAKKAYTLY 2030
>dbj|BAD95221.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
Length = 50
Score = 57.4 bits (137), Expect(2) = 6e-10
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = -2
Query: 280 ERKHTLYFMCDSYLGCDQEYSFTVDVKEAATED 182
E+ +TLYFMCDSYLGCDQEYSF+VDVK + D
Sbjct: 14 EKSYTLYFMCDSYLGCDQEYSFSVDVKGSGAGD 46
Score = 32.0 bits (71), Expect(2) = 6e-10
Identities = 11/19 (57%), Positives = 19/19 (100%)
Frame = -1
Query: 314 VKLDFTAPTEPGKKTHSVF 258
V+LDFTAP+EPG+K+++++
Sbjct: 2 VRLDFTAPSEPGEKSYTLY 20