BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00025738
         (1285 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q02964.1|POL_CAMVE RecName: Full=Enzymatic polyprotein; Inclu...   242   3e-61
emb|CAA55974.1| unnamed protein product [Cauliflower mosaic virus]    242   3e-61
gb|AGT42112.1| reverse transcriptase [Cauliflower mosaic virus]       241   4e-61
gb|ABY66595.1| reverse transcriptase [Cauliflower mosaic virus]       241   4e-61
gb|AGT42189.1| reverse transcriptase [Cauliflower mosaic virus]       241   5e-61
gb|AGT42182.1| reverse transcriptase [Cauliflower mosaic virus]       241   5e-61
gb|AGT42147.1| reverse transcriptase [Cauliflower mosaic virus] ...   241   5e-61
gb|AGT42098.1| reverse transcriptase [Cauliflower mosaic virus] ...   241   5e-61
gb|AGT42077.1| reverse transcriptase [Cauliflower mosaic virus]       241   5e-61
gb|AGT42063.1| reverse transcriptase [Cauliflower mosaic virus] ...   241   5e-61
sp|P03555.1|POL_CAMVC RecName: Full=Enzymatic polyprotein; Inclu...   241   5e-61
ref|NP_056728.1| reverse transcriptase [Cauliflower mosaic virus...   241   5e-61
gb|AFI61742.1| reverse transcriptase [Cauliflower mosaic virus]       241   5e-61
gb|AGT42175.1| reverse transcriptase [Cauliflower mosaic virus]       241   6e-61
gb|AGT42140.1| reverse transcriptase [Cauliflower mosaic virus]       241   6e-61
gb|AGT42091.1| reverse transcriptase [Cauliflower mosaic virus]       240   8e-61
ref|YP_006907834.1| polyprotein [Horseradish latent virus] gi|57...   240   8e-61
gb|AGT42105.1| reverse transcriptase [Cauliflower mosaic virus]       240   1e-60
gb|AGT42070.1| reverse transcriptase [Cauliflower mosaic virus] ...   240   1e-60
sp|P03556.1|POL_CAMVD RecName: Full=Enzymatic polyprotein; Inclu...   239   2e-60

>sp|Q02964.1|POL_CAMVE RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic
            protease; Includes: RecName: Full=Endonuclease; Includes:
            RecName: Full=Reverse transcriptase
            gi|293185|gb|AAA62375.1| reverse transcriptase
            [Cauliflower mosaic virus]
          Length = 679

 Score =  242 bits (617), Expect = 3e-61
 Identities = 142/395 (35%), Positives = 223/395 (56%), Gaps = 2/395 (0%)
 Frame = +2

Query: 101  KTPPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMP 280
            K P +Y  ++G D ++GNNF Q ++ F Q   T R+IFT    + + + +L  A      
Sbjct: 99   KIPTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKNKSYPVHIAKLTRAV----- 151

Query: 281  INFRSKRGDEAKLRNPKMADRRKFGEALLSYRQFGSIQKDQKIWDNNLYSFRVQGEERVT 460
                 + G E  L + K   + +  E +             KI +N L    +  E R  
Sbjct: 152  -----RVGTEGFLESMKKRSKTQQPEPVNI--------STNKI-ENPLKEIAILSEGRRL 197

Query: 461  PEAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLK--VK 634
             E   +L+++             Q  ++ I++ +++  +E+PL   D N+ K  +K  +K
Sbjct: 198  SEE--KLFIT-------------QQRMQKIEELLEKVCSENPL---DPNKTKQWMKASIK 239

Query: 635  PGKEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGK 814
                 + ++ KP+  +  DRE+  K +KE LDLK+I P  SP+ +P FLV N  E +RGK
Sbjct: 240  LSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGK 299

Query: 815  PRLVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMEEESKKFTA 994
             R+V+NYK +N     D Y +P+++ L+  I+G KIFS FDCKSGF+Q+ +++ES+  TA
Sbjct: 300  KRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTA 359

Query: 995  FSTPQGHYIWNVMPMGLANAPQIYQRKMDNLFKDYFSFMFVYIDDILIASKNMKEHLKHL 1174
            F+ PQGHY WNV+P GL  AP I+QR MD  F+ +  F  VY+DDIL+ S N ++HL H+
Sbjct: 360  FTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHV 419

Query: 1175 EIFSDVCHKEGLVLSEKKAVIATRQIEFLGIEIDE 1279
             +    C++ G++LS+KKA +  ++I FLG+EIDE
Sbjct: 420  AMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 454


>emb|CAA55974.1| unnamed protein product [Cauliflower mosaic virus]
          Length = 680

 Score =  242 bits (617), Expect = 3e-61
 Identities = 142/395 (35%), Positives = 223/395 (56%), Gaps = 2/395 (0%)
 Frame = +2

Query: 101  KTPPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMP 280
            K P +Y  ++G D ++GNNF Q ++ F Q   T R+IFT    + + + +L  A      
Sbjct: 100  KIPTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKNKSYPVHIAKLTRAV----- 152

Query: 281  INFRSKRGDEAKLRNPKMADRRKFGEALLSYRQFGSIQKDQKIWDNNLYSFRVQGEERVT 460
                 + G E  L + K   + +  E +             KI +N L    +  E R  
Sbjct: 153  -----RVGTEGFLESMKKRSKTQQPEPVNI--------STNKI-ENPLEEIAILSEGRRL 198

Query: 461  PEAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLK--VK 634
             E   +L+++             Q  ++ I++ +++  +E+PL   D N+ K  +K  +K
Sbjct: 199  SEE--KLFIT-------------QQRMQKIEELLEKVCSENPL---DPNKTKQWMKASIK 240

Query: 635  PGKEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGK 814
                 + ++ KP+  +  DRE+  K +KE LDLK+I P  SP+ +P FLV N  E +RGK
Sbjct: 241  LSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGK 300

Query: 815  PRLVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMEEESKKFTA 994
             R+V+NYK +N     D Y +P+++ L+  I+G KIFS FDCKSGF+Q+ +++ES+  TA
Sbjct: 301  KRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTA 360

Query: 995  FSTPQGHYIWNVMPMGLANAPQIYQRKMDNLFKDYFSFMFVYIDDILIASKNMKEHLKHL 1174
            F+ PQGHY WNV+P GL  AP I+QR MD  F+ +  F  VY+DDIL+ S N ++HL H+
Sbjct: 361  FTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHV 420

Query: 1175 EIFSDVCHKEGLVLSEKKAVIATRQIEFLGIEIDE 1279
             +    C++ G++LS+KKA +  ++I FLG+EIDE
Sbjct: 421  AMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 455


>gb|AGT42112.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 675

 Score =  241 bits (616), Expect = 4e-61
 Identities = 137/393 (34%), Positives = 219/393 (55%), Gaps = 2/393 (0%)
 Frame = +2

Query: 107  PPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPIN 286
            P +Y  ++G D ++GNNF Q ++ F Q   T R+IFT    + + + +L +A        
Sbjct: 104  PTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKDRTYPVHIAKLTKAV------- 154

Query: 287  FRSKRGDEAKLRNPKMADRRKFGEAL-LSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTP 463
               + G E  L + K   + +  E + +S  +   + + +++ +  L+            
Sbjct: 155  ---RVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLF------------ 199

Query: 464  EAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-PG 640
                             +T +    +E++ +K+      DP     K  +KAS+K+  P 
Sbjct: 200  -----------------ITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDPS 240

Query: 641  KEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPR 820
            K    ++ KP+  +  DRE+  K +KE LDLK+I P  SP+ +P FLV N  E +RGK R
Sbjct: 241  KA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 297

Query: 821  LVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMEEESKKFTAFS 1000
            +V+NYK +N     D Y +P+++ L+  I+G KIFS FDCKSGF+Q+ +++ES+  TAF+
Sbjct: 298  MVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFT 357

Query: 1001 TPQGHYIWNVMPMGLANAPQIYQRKMDNLFKDYFSFMFVYIDDILIASKNMKEHLKHLEI 1180
             PQGHY WNV+P GL  AP I+QR MD  F+ +  F  VY+DDIL+ S N ++HL H+ +
Sbjct: 358  CPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAM 417

Query: 1181 FSDVCHKEGLVLSEKKAVIATRQIEFLGIEIDE 1279
                C++ G++LS+KKA +  ++I FLG+EIDE
Sbjct: 418  ILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 450


>gb|ABY66595.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 674

 Score =  241 bits (616), Expect = 4e-61
 Identities = 137/393 (34%), Positives = 218/393 (55%), Gaps = 2/393 (0%)
 Frame = +2

Query: 107  PPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPIN 286
            P +Y  ++G D ++GNNF Q ++ F Q   T R+IFT    + + + +L  A        
Sbjct: 103  PTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKDRTYPVHIAKLTRAV------- 153

Query: 287  FRSKRGDEAKLRNPKMADRRKFGEAL-LSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTP 463
               + G E  L + K   + +  E + +S  +   + + +++ +  L+            
Sbjct: 154  ---RVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLF------------ 198

Query: 464  EAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-PG 640
                             +T +    +E++ +K+      DP     K  +KAS+K+  P 
Sbjct: 199  -----------------ITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDPS 239

Query: 641  KEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPR 820
            K    ++ KP+  +  DRE+  K +KE LDLK+I P  SP+ +P FLV N  E +RGK R
Sbjct: 240  KA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 296

Query: 821  LVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMEEESKKFTAFS 1000
            +V+NYK +N     D Y +P+++ L+  I+G KIFS FDCKSGF+Q+ +++ES+  TAF+
Sbjct: 297  MVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFT 356

Query: 1001 TPQGHYIWNVMPMGLANAPQIYQRKMDNLFKDYFSFMFVYIDDILIASKNMKEHLKHLEI 1180
             PQGHY WNV+P GL  AP I+QR MD  F+ +  F  VY+DDIL+ S N ++HL H+ +
Sbjct: 357  CPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNKEDHLLHVAM 416

Query: 1181 FSDVCHKEGLVLSEKKAVIATRQIEFLGIEIDE 1279
                C++ G++LS+KKA +  ++I FLG+EIDE
Sbjct: 417  ILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 449


>gb|AGT42189.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 675

 Score =  241 bits (615), Expect = 5e-61
 Identities = 137/393 (34%), Positives = 218/393 (55%), Gaps = 2/393 (0%)
 Frame = +2

Query: 107  PPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPIN 286
            P +Y  ++G D ++GNNF Q ++ F Q   T R+IFT    + + + +L  A        
Sbjct: 104  PTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKDRTYPVHIAKLTRAV------- 154

Query: 287  FRSKRGDEAKLRNPKMADRRKFGEAL-LSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTP 463
               + G E  L + K   + +  E + +S  +   + + +++ +  L+            
Sbjct: 155  ---RVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLF------------ 199

Query: 464  EAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-PG 640
                             +T +    +E++ +K+      DP     K  +KAS+K+  P 
Sbjct: 200  -----------------ITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDPS 240

Query: 641  KEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPR 820
            K    ++ KP+  +  DRE+  K +KE LDLK+I P  SP+ +P FLV N  E +RGK R
Sbjct: 241  KA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 297

Query: 821  LVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMEEESKKFTAFS 1000
            +V+NYK +N     D Y +P+++ L+  I+G KIFS FDCKSGF+Q+ +++ES+  TAF+
Sbjct: 298  MVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFT 357

Query: 1001 TPQGHYIWNVMPMGLANAPQIYQRKMDNLFKDYFSFMFVYIDDILIASKNMKEHLKHLEI 1180
             PQGHY WNV+P GL  AP I+QR MD  F+ +  F  VY+DDIL+ S N ++HL H+ +
Sbjct: 358  CPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAM 417

Query: 1181 FSDVCHKEGLVLSEKKAVIATRQIEFLGIEIDE 1279
                C++ G++LS+KKA +  ++I FLG+EIDE
Sbjct: 418  ILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 450


>gb|AGT42182.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 675

 Score =  241 bits (615), Expect = 5e-61
 Identities = 137/393 (34%), Positives = 218/393 (55%), Gaps = 2/393 (0%)
 Frame = +2

Query: 107  PPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPIN 286
            P +Y  ++G D ++GNNF Q ++ F Q   T R+IFT    + + + +L  A        
Sbjct: 104  PTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKDRTYPVHIAKLTRAV------- 154

Query: 287  FRSKRGDEAKLRNPKMADRRKFGEAL-LSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTP 463
               + G E  L + K   + +  E + +S  +   + + +++ +  L+            
Sbjct: 155  ---RVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLF------------ 199

Query: 464  EAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-PG 640
                             +T +    +E++ +K+      DP     K  +KAS+K+  P 
Sbjct: 200  -----------------ITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDPS 240

Query: 641  KEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPR 820
            K    ++ KP+  +  DRE+  K +KE LDLK+I P  SP+ +P FLV N  E +RGK R
Sbjct: 241  KA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 297

Query: 821  LVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMEEESKKFTAFS 1000
            +V+NYK +N     D Y +P+++ L+  I+G KIFS FDCKSGF+Q+ +++ES+  TAF+
Sbjct: 298  MVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFT 357

Query: 1001 TPQGHYIWNVMPMGLANAPQIYQRKMDNLFKDYFSFMFVYIDDILIASKNMKEHLKHLEI 1180
             PQGHY WNV+P GL  AP I+QR MD  F+ +  F  VY+DDIL+ S N ++HL H+ +
Sbjct: 358  CPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAM 417

Query: 1181 FSDVCHKEGLVLSEKKAVIATRQIEFLGIEIDE 1279
                C++ G++LS+KKA +  ++I FLG+EIDE
Sbjct: 418  ILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 450


>gb|AGT42147.1| reverse transcriptase [Cauliflower mosaic virus]
            gi|530722499|gb|AGT42154.1| reverse transcriptase
            [Cauliflower mosaic virus]
          Length = 675

 Score =  241 bits (615), Expect = 5e-61
 Identities = 137/393 (34%), Positives = 218/393 (55%), Gaps = 2/393 (0%)
 Frame = +2

Query: 107  PPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPIN 286
            P +Y  ++G D ++GNNF Q ++ F Q   T R+IFT    + + + +L  A        
Sbjct: 104  PTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKDRTYPVHIAKLTRAV------- 154

Query: 287  FRSKRGDEAKLRNPKMADRRKFGEAL-LSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTP 463
               + G E  L + K   + +  E + +S  +   + + +++ +  L+            
Sbjct: 155  ---RVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLF------------ 199

Query: 464  EAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-PG 640
                             +T +    +E++ +K+      DP     K  +KAS+K+  P 
Sbjct: 200  -----------------ITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDPS 240

Query: 641  KEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPR 820
            K    ++ KP+  +  DRE+  K +KE LDLK+I P  SP+ +P FLV N  E +RGK R
Sbjct: 241  KA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 297

Query: 821  LVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMEEESKKFTAFS 1000
            +V+NYK +N     D Y +P+++ L+  I+G KIFS FDCKSGF+Q+ +++ES+  TAF+
Sbjct: 298  MVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFT 357

Query: 1001 TPQGHYIWNVMPMGLANAPQIYQRKMDNLFKDYFSFMFVYIDDILIASKNMKEHLKHLEI 1180
             PQGHY WNV+P GL  AP I+QR MD  F+ +  F  VY+DDIL+ S N ++HL H+ +
Sbjct: 358  CPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAM 417

Query: 1181 FSDVCHKEGLVLSEKKAVIATRQIEFLGIEIDE 1279
                C++ G++LS+KKA +  ++I FLG+EIDE
Sbjct: 418  ILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 450


>gb|AGT42098.1| reverse transcriptase [Cauliflower mosaic virus]
            gi|530722467|gb|AGT42126.1| reverse transcriptase
            [Cauliflower mosaic virus] gi|530722475|gb|AGT42133.1|
            reverse transcriptase [Cauliflower mosaic virus]
          Length = 675

 Score =  241 bits (615), Expect = 5e-61
 Identities = 137/393 (34%), Positives = 218/393 (55%), Gaps = 2/393 (0%)
 Frame = +2

Query: 107  PPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPIN 286
            P +Y  ++G D ++GNNF Q ++ F Q   T R+IFT    + + + +L  A        
Sbjct: 104  PTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKDRTYPVHIAKLTRAV------- 154

Query: 287  FRSKRGDEAKLRNPKMADRRKFGEAL-LSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTP 463
               + G E  L + K   + +  E + +S  +   + + +++ +  L+            
Sbjct: 155  ---RVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLF------------ 199

Query: 464  EAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-PG 640
                             +T +    +E++ +K+      DP     K  +KAS+K+  P 
Sbjct: 200  -----------------ITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDPS 240

Query: 641  KEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPR 820
            K    ++ KP+  +  DRE+  K +KE LDLK+I P  SP+ +P FLV N  E +RGK R
Sbjct: 241  KA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 297

Query: 821  LVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMEEESKKFTAFS 1000
            +V+NYK +N     D Y +P+++ L+  I+G KIFS FDCKSGF+Q+ +++ES+  TAF+
Sbjct: 298  MVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFT 357

Query: 1001 TPQGHYIWNVMPMGLANAPQIYQRKMDNLFKDYFSFMFVYIDDILIASKNMKEHLKHLEI 1180
             PQGHY WNV+P GL  AP I+QR MD  F+ +  F  VY+DDIL+ S N ++HL H+ +
Sbjct: 358  CPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAM 417

Query: 1181 FSDVCHKEGLVLSEKKAVIATRQIEFLGIEIDE 1279
                C++ G++LS+KKA +  ++I FLG+EIDE
Sbjct: 418  ILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 450


>gb|AGT42077.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 675

 Score =  241 bits (615), Expect = 5e-61
 Identities = 137/393 (34%), Positives = 218/393 (55%), Gaps = 2/393 (0%)
 Frame = +2

Query: 107  PPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPIN 286
            P +Y  ++G D ++GNNF Q ++ F Q   T R+IFT    + + + +L  A        
Sbjct: 104  PTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKDRTYPVHITKLTRAV------- 154

Query: 287  FRSKRGDEAKLRNPKMADRRKFGEAL-LSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTP 463
               + G E  L + K   + +  E + +S  +   + + +++ +  L+            
Sbjct: 155  ---RVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLF------------ 199

Query: 464  EAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-PG 640
                             +T +    +E++ +K+      DP     K  +KAS+K+  P 
Sbjct: 200  -----------------ITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDPS 240

Query: 641  KEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPR 820
            K    ++ KP+  +  DRE+  K +KE LDLK+I P  SP+ +P FLV N  E +RGK R
Sbjct: 241  KA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 297

Query: 821  LVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMEEESKKFTAFS 1000
            +V+NYK +N     D Y +P+++ L+  I+G KIFS FDCKSGF+Q+ +++ES+  TAF+
Sbjct: 298  MVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFT 357

Query: 1001 TPQGHYIWNVMPMGLANAPQIYQRKMDNLFKDYFSFMFVYIDDILIASKNMKEHLKHLEI 1180
             PQGHY WNV+P GL  AP I+QR MD  F+ +  F  VY+DDIL+ S N ++HL H+ +
Sbjct: 358  CPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAM 417

Query: 1181 FSDVCHKEGLVLSEKKAVIATRQIEFLGIEIDE 1279
                C++ G++LS+KKA +  ++I FLG+EIDE
Sbjct: 418  ILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 450


>gb|AGT42063.1| reverse transcriptase [Cauliflower mosaic virus]
            gi|530722459|gb|AGT42119.1| reverse transcriptase
            [Cauliflower mosaic virus] gi|530722507|gb|AGT42161.1|
            reverse transcriptase [Cauliflower mosaic virus]
            gi|530722515|gb|AGT42168.1| reverse transcriptase
            [Cauliflower mosaic virus]
          Length = 675

 Score =  241 bits (615), Expect = 5e-61
 Identities = 137/393 (34%), Positives = 218/393 (55%), Gaps = 2/393 (0%)
 Frame = +2

Query: 107  PPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPIN 286
            P +Y  ++G D ++GNNF Q ++ F Q   T R+IFT    + + + +L  A        
Sbjct: 104  PTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKDRTYPVHIAKLTRAV------- 154

Query: 287  FRSKRGDEAKLRNPKMADRRKFGEAL-LSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTP 463
               + G E  L + K   + +  E + +S  +   + + +++ +  L+            
Sbjct: 155  ---RVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLF------------ 199

Query: 464  EAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-PG 640
                             +T +    +E++ +K+      DP     K  +KAS+K+  P 
Sbjct: 200  -----------------ITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDPS 240

Query: 641  KEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPR 820
            K    ++ KP+  +  DRE+  K +KE LDLK+I P  SP+ +P FLV N  E +RGK R
Sbjct: 241  KA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 297

Query: 821  LVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMEEESKKFTAFS 1000
            +V+NYK +N     D Y +P+++ L+  I+G KIFS FDCKSGF+Q+ +++ES+  TAF+
Sbjct: 298  MVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFT 357

Query: 1001 TPQGHYIWNVMPMGLANAPQIYQRKMDNLFKDYFSFMFVYIDDILIASKNMKEHLKHLEI 1180
             PQGHY WNV+P GL  AP I+QR MD  F+ +  F  VY+DDIL+ S N ++HL H+ +
Sbjct: 358  CPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAM 417

Query: 1181 FSDVCHKEGLVLSEKKAVIATRQIEFLGIEIDE 1279
                C++ G++LS+KKA +  ++I FLG+EIDE
Sbjct: 418  ILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 450


>sp|P03555.1|POL_CAMVC RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic
            protease; Includes: RecName: Full=Endonuclease; Includes:
            RecName: Full=Reverse transcriptase
          Length = 679

 Score =  241 bits (615), Expect = 5e-61
 Identities = 142/395 (35%), Positives = 223/395 (56%), Gaps = 2/395 (0%)
 Frame = +2

Query: 101  KTPPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMP 280
            K P +Y  ++G D ++GNNF Q ++ F Q   T R+IFT    + + + +L  A      
Sbjct: 99   KIPTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKNKSYPVHITKLTRAV----- 151

Query: 281  INFRSKRGDEAKLRNPKMADRRKFGEALLSYRQFGSIQKDQKIWDNNLYSFRVQGEERVT 460
                 + G E  L + K   + +  E +             KI +N L    +  E R  
Sbjct: 152  -----RVGIEGFLESMKKRSKTQQPEPVNI--------STNKI-ENPLEEIAILSEGRRL 197

Query: 461  PEAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLK--VK 634
             E   +L+++             Q  ++ I++ +++  +E+PL   D N+ K  +K  +K
Sbjct: 198  SEE--KLFIT-------------QQRMQKIEELLEKVCSENPL---DPNKTKQWMKASIK 239

Query: 635  PGKEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGK 814
                 + ++ KP+  +  DRE+  K +KE LDLK+I P  SP+ +P FLV N  E +RGK
Sbjct: 240  LSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGK 299

Query: 815  PRLVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMEEESKKFTA 994
             R+V+NYK +N     D Y +P+++ L+  I+G KIFS FDCKSGF+Q+ +++ES+  TA
Sbjct: 300  KRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTA 359

Query: 995  FSTPQGHYIWNVMPMGLANAPQIYQRKMDNLFKDYFSFMFVYIDDILIASKNMKEHLKHL 1174
            F+ PQGHY WNV+P GL  AP I+QR MD  F+ +  F  VY+DDIL+ S N ++HL H+
Sbjct: 360  FTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHV 419

Query: 1175 EIFSDVCHKEGLVLSEKKAVIATRQIEFLGIEIDE 1279
             +    C++ G++LS+KKA +  ++I FLG+EIDE
Sbjct: 420  AMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 454


>ref|NP_056728.1| reverse transcriptase [Cauliflower mosaic virus]
            gi|130592|sp|P03554.1|POL_CAMVS RecName: Full=Enzymatic
            polyprotein; Includes: RecName: Full=Aspartic protease;
            Includes: RecName: Full=Endonuclease; Includes: RecName:
            Full=Reverse transcriptase gi|58826|emb|CAA23460.1|
            unnamed protein product [Cauliflower mosaic virus]
          Length = 679

 Score =  241 bits (615), Expect = 5e-61
 Identities = 141/395 (35%), Positives = 223/395 (56%), Gaps = 2/395 (0%)
 Frame = +2

Query: 101  KTPPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMP 280
            + P +Y  ++G D ++GNNF Q ++ F Q   T R+IFT    + + + +L  A      
Sbjct: 99   RIPTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKNKSYPVHIAKLTRAV----- 151

Query: 281  INFRSKRGDEAKLRNPKMADRRKFGEALLSYRQFGSIQKDQKIWDNNLYSFRVQGEERVT 460
                 + G E  L + K   + +  E +             KI +N L    +  E R  
Sbjct: 152  -----RVGTEGFLESMKKRSKTQQPEPVNI--------STNKI-ENPLEEIAILSEGRRL 197

Query: 461  PEAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLK--VK 634
             E   +L+++             Q  ++ I++ +++  +E+PL   D N+ K  +K  +K
Sbjct: 198  SEE--KLFIT-------------QQRMQKIEELLEKVCSENPL---DPNKTKQWMKASIK 239

Query: 635  PGKEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGK 814
                 + ++ KP+  +  DRE+  K +KE LDLK+I P  SP+ +P FLV N  E +RGK
Sbjct: 240  LSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGK 299

Query: 815  PRLVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMEEESKKFTA 994
             R+V+NYK +N     D Y +P+++ L+  I+G KIFS FDCKSGF+Q+ +++ES+  TA
Sbjct: 300  KRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTA 359

Query: 995  FSTPQGHYIWNVMPMGLANAPQIYQRKMDNLFKDYFSFMFVYIDDILIASKNMKEHLKHL 1174
            F+ PQGHY WNV+P GL  AP I+QR MD  F+ +  F  VY+DDIL+ S N ++HL H+
Sbjct: 360  FTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHV 419

Query: 1175 EIFSDVCHKEGLVLSEKKAVIATRQIEFLGIEIDE 1279
             +    C++ G++LS+KKA +  ++I FLG+EIDE
Sbjct: 420  AMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 454


>gb|AFI61742.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 679

 Score =  241 bits (615), Expect = 5e-61
 Identities = 140/395 (35%), Positives = 222/395 (56%), Gaps = 2/395 (0%)
 Frame = +2

Query: 101  KTPPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMP 280
            K P +Y  ++G D ++GNNF Q ++ F Q   T R+IFT    + + + +L  A      
Sbjct: 99   KIPTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKNKSYPVHIAKLTRAV----- 151

Query: 281  INFRSKRGDEAKLRNPKMADRRKFGEALLSYRQFGSIQKDQKIWDNNLYSFRVQGEERVT 460
                 + G E  L + K   + +  E +                  N+ + +++  +   
Sbjct: 152  -----RVGTEGFLESMKKRSKTQQPEPV------------------NISTNKIENPK--- 185

Query: 461  PEAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLK--VK 634
             E IA L  S       +     Q  ++ I++ +++  +E+PL   D N+ K  +K  +K
Sbjct: 186  -EEIAIL--SEGRRLAEEKLFITQQRMQKIEELLEKVCSENPL---DPNKTKQWMKASIK 239

Query: 635  PGKEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGK 814
                 + ++ KP+  +  DRE+  K +KE LDLK+I P  SP+ +P FLV N  E +RGK
Sbjct: 240  LSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGK 299

Query: 815  PRLVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMEEESKKFTA 994
             R+V+NYK +N     D Y +P+++ L+  I+G KIFS FDCKSGF+Q+ +++ES+  TA
Sbjct: 300  KRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTA 359

Query: 995  FSTPQGHYIWNVMPMGLANAPQIYQRKMDNLFKDYFSFMFVYIDDILIASKNMKEHLKHL 1174
            F+ PQGHY WNV+P GL  AP I+QR MD  F+ +  F  VY+DDIL+ S N ++HL H+
Sbjct: 360  FTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHV 419

Query: 1175 EIFSDVCHKEGLVLSEKKAVIATRQIEFLGIEIDE 1279
             +    C++ G++LS+KKA +  ++I FLG+EIDE
Sbjct: 420  AMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 454


>gb|AGT42175.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 675

 Score =  241 bits (614), Expect = 6e-61
 Identities = 136/393 (34%), Positives = 218/393 (55%), Gaps = 2/393 (0%)
 Frame = +2

Query: 107  PPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPIN 286
            P +Y  ++G D ++GNNF Q ++ F Q   T R+IFT    + + + +L  A        
Sbjct: 104  PTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKDRTYPVHIAKLTRAV------- 154

Query: 287  FRSKRGDEAKLRNPKMADRRKFGEAL-LSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTP 463
               + G E  L + K   + +  E + +S  +   + + +++ +  L+            
Sbjct: 155  ---RVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLF------------ 199

Query: 464  EAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-PG 640
                             +T +    +E++ +K+      DP     K  +KAS+K+  P 
Sbjct: 200  -----------------ITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDPS 240

Query: 641  KEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPR 820
            K    ++ KP+  +  DRE+  K +KE LDLK+I P  SP+ +P FLV N  E +RGK R
Sbjct: 241  KA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 297

Query: 821  LVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMEEESKKFTAFS 1000
            +V+NYK +N     D Y +P+++ L+  ++G KIFS FDCKSGF+Q+ +++ES+  TAF+
Sbjct: 298  MVVNYKAMNKATVGDAYNLPNKDELLTLVRGKKIFSSFDCKSGFWQVLLDQESRPLTAFT 357

Query: 1001 TPQGHYIWNVMPMGLANAPQIYQRKMDNLFKDYFSFMFVYIDDILIASKNMKEHLKHLEI 1180
             PQGHY WNV+P GL  AP I+QR MD  F+ +  F  VY+DDIL+ S N ++HL H+ +
Sbjct: 358  CPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAM 417

Query: 1181 FSDVCHKEGLVLSEKKAVIATRQIEFLGIEIDE 1279
                C++ G++LS+KKA +  ++I FLG+EIDE
Sbjct: 418  ILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 450


>gb|AGT42140.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 675

 Score =  241 bits (614), Expect = 6e-61
 Identities = 137/393 (34%), Positives = 218/393 (55%), Gaps = 2/393 (0%)
 Frame = +2

Query: 107  PPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPIN 286
            P +Y  ++G D ++GNNF Q ++ F Q   T R+IFT    + + + +L  A        
Sbjct: 104  PTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKDRTYPVHIAKLTRAV------- 154

Query: 287  FRSKRGDEAKLRNPKMADRRKFGEAL-LSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTP 463
               + G E  L + K   + +  E + +S  +   + + +++ +  L+            
Sbjct: 155  ---RVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLF------------ 199

Query: 464  EAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-PG 640
                             +T +    +E++ +K+      DP     K  +KAS+K+  P 
Sbjct: 200  -----------------ITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDPS 240

Query: 641  KEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPR 820
            K    ++ KP+  +  DRE+  K +KE LDLK+I P  SP+ +P FLV N  E +RGK R
Sbjct: 241  KA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 297

Query: 821  LVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMEEESKKFTAFS 1000
            +V+NYK +N     D Y +P+++ L+  I+G KIFS FDCKSGF+Q+ +++ES+  TAF+
Sbjct: 298  MVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFT 357

Query: 1001 TPQGHYIWNVMPMGLANAPQIYQRKMDNLFKDYFSFMFVYIDDILIASKNMKEHLKHLEI 1180
             PQGHY WNV+P GL  AP I+QR MD  F+ +  F  VY+DDIL+ S N ++HL H+ +
Sbjct: 358  CPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAM 417

Query: 1181 FSDVCHKEGLVLSEKKAVIATRQIEFLGIEIDE 1279
                C++ G++LS+KKA +  ++I FLG+EIDE
Sbjct: 418  ILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 450


>gb|AGT42091.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 675

 Score =  240 bits (613), Expect = 8e-61
 Identities = 137/393 (34%), Positives = 217/393 (55%), Gaps = 2/393 (0%)
 Frame = +2

Query: 107  PPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPIN 286
            P +Y  ++G D ++GNNF Q ++ F Q   T R+IFT    + + + +L  A        
Sbjct: 104  PTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKDRTYPVHIAKLTRAV------- 154

Query: 287  FRSKRGDEAKLRNPKMADRRKFGEAL-LSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTP 463
               + G E  L + K   +    E + +S  +   + + +++ +  L+            
Sbjct: 155  ---RVGTEGFLESMKKRSKTHQPEPVNISTNKIAILSEGRRLSEEKLF------------ 199

Query: 464  EAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-PG 640
                             +T +    +E++ +K+      DP     K  +KAS+K+  P 
Sbjct: 200  -----------------ITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDPS 240

Query: 641  KEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPR 820
            K    ++ KP+  +  DRE+  K +KE LDLK+I P  SP+ +P FLV N  E +RGK R
Sbjct: 241  KA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 297

Query: 821  LVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMEEESKKFTAFS 1000
            +V+NYK +N     D Y +P+++ L+  I+G KIFS FDCKSGF+Q+ +++ES+  TAF+
Sbjct: 298  MVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFT 357

Query: 1001 TPQGHYIWNVMPMGLANAPQIYQRKMDNLFKDYFSFMFVYIDDILIASKNMKEHLKHLEI 1180
             PQGHY WNV+P GL  AP I+QR MD  F+ +  F  VY+DDIL+ S N ++HL H+ +
Sbjct: 358  CPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAM 417

Query: 1181 FSDVCHKEGLVLSEKKAVIATRQIEFLGIEIDE 1279
                C++ G++LS+KKA +  ++I FLG+EIDE
Sbjct: 418  ILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 450


>ref|YP_006907834.1| polyprotein [Horseradish latent virus] gi|57790326|gb|AAW56089.1|
            polyprotein [Horseradish latent virus]
          Length = 679

 Score =  240 bits (613), Expect = 8e-61
 Identities = 135/390 (34%), Positives = 214/390 (54%), Gaps = 1/390 (0%)
 Frame = +2

Query: 113  IYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPINFR 292
            ++  ++G D ++GNNF Q +  F Q   T  ++FT    +++ + +LR AF R +P    
Sbjct: 111  VFQQESGIDFIIGNNFCQEYSPFIQF--TGHIVFTMKDQYQVPITKLRRAFKRGIPGFLE 168

Query: 293  S-KRGDEAKLRNPKMADRRKFGEALLSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTPEA 469
            S K+   A+   P      K   +L   R+FG   +                        
Sbjct: 169  SMKKRSTAQQPEPLNISTNKT-VSLSRGRRFGEKLR------------------------ 203

Query: 470  IAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVKPGKEY 649
                           +T E  + +E++ +K+      DP     K  ++AS+K+    + 
Sbjct: 204  ---------------ITQERMVKIEELLEKVCSENPLDPEK--SKGWMQASIKLSDPTKV 246

Query: 650  EFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPRLVI 829
              ++ KP+  +  DRE+ +K ++E LDLK+I P  SP+ +P FLV N  E +RGK R+V+
Sbjct: 247  --IKVKPMKYSPMDREEFEKQIQELLDLKVIRPSKSPHMAPAFLVNNEAEKRRGKKRMVV 304

Query: 830  NYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMEEESKKFTAFSTPQ 1009
            NYK +N+    D Y +P+++ L+  I+G KIFS FDCKSGF+Q++++EESK  TAF+ PQ
Sbjct: 305  NYKAMNDATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVRLDEESKSLTAFTCPQ 364

Query: 1010 GHYIWNVMPMGLANAPQIYQRKMDNLFKDYFSFMFVYIDDILIASKNMKEHLKHLEIFSD 1189
            GHY WNV+P G+  AP I+QR MD  FK +  F  +Y+DDIL+ S N + H  H+ +   
Sbjct: 365  GHYEWNVVPFGMKQAPSIFQRHMDEAFKVFRKFCCIYVDDILVFSDNEQNHQLHVAMILQ 424

Query: 1190 VCHKEGLVLSEKKAVIATRQIEFLGIEIDE 1279
             C++ G++LS+KKA +   +I FLG+EID+
Sbjct: 425  KCYQHGIILSKKKAQLFKERINFLGLEIDQ 454


>gb|AGT42105.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 675

 Score =  240 bits (612), Expect = 1e-60
 Identities = 136/393 (34%), Positives = 218/393 (55%), Gaps = 2/393 (0%)
 Frame = +2

Query: 107  PPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPIN 286
            P +Y  ++G D ++GNNF Q ++ F Q   T R+IFT    + + + +L  A        
Sbjct: 104  PTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKDRTYPVHIAKLTRAV------- 154

Query: 287  FRSKRGDEAKLRNPKMADRRKFGEAL-LSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTP 463
               + G E  L + K   + +  E + +S  +   + + +++ +  L+            
Sbjct: 155  ---RVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLF------------ 199

Query: 464  EAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-PG 640
                             +T +    +E++ +K+      DP     K  +KAS+K+  P 
Sbjct: 200  -----------------ITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDPS 240

Query: 641  KEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPR 820
            K    ++ KP+  +  DRE+  K +KE LDLK+I P  SP+ +P FLV N  E +RGK R
Sbjct: 241  KA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 297

Query: 821  LVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMEEESKKFTAFS 1000
            +V+NYK +N     D Y +P+++ L+  I+G KIFS FDCKSGF+Q+ ++++S+  TAF+
Sbjct: 298  MVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQDSRPLTAFT 357

Query: 1001 TPQGHYIWNVMPMGLANAPQIYQRKMDNLFKDYFSFMFVYIDDILIASKNMKEHLKHLEI 1180
             PQGHY WNV+P GL  AP I+QR MD  F+ +  F  VY+DDIL+ S N ++HL H+ +
Sbjct: 358  CPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAM 417

Query: 1181 FSDVCHKEGLVLSEKKAVIATRQIEFLGIEIDE 1279
                C++ G++LS+KKA +  ++I FLG+EIDE
Sbjct: 418  ILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 450


>gb|AGT42070.1| reverse transcriptase [Cauliflower mosaic virus]
            gi|530722547|gb|AGT42196.1| reverse transcriptase
            [Cauliflower mosaic virus]
          Length = 675

 Score =  240 bits (612), Expect = 1e-60
 Identities = 136/393 (34%), Positives = 218/393 (55%), Gaps = 2/393 (0%)
 Frame = +2

Query: 107  PPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPIN 286
            P +Y  ++G D ++GNNF Q ++ F Q   T R+IFT    + + + +L  A        
Sbjct: 104  PTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKDRTYPVHIAKLTRAV------- 154

Query: 287  FRSKRGDEAKLRNPKMADRRKFGEAL-LSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTP 463
               + G E  L + K   + +  E + +S  +   + + +++ +  L+            
Sbjct: 155  ---RVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLF------------ 199

Query: 464  EAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-PG 640
                             +T +    +E++ +K+      DP     K  +KAS+K+  P 
Sbjct: 200  -----------------ITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDPS 240

Query: 641  KEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPR 820
            K    ++ KP+  +  DRE+  K +KE LDLK+I P  SP+ +P FLV N  E +RGK R
Sbjct: 241  KA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 297

Query: 821  LVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMEEESKKFTAFS 1000
            +V+NYK +N     D Y +P+++ L+  I+G KIFS FDCKSGF+Q+ ++++S+  TAF+
Sbjct: 298  MVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQDSRPLTAFT 357

Query: 1001 TPQGHYIWNVMPMGLANAPQIYQRKMDNLFKDYFSFMFVYIDDILIASKNMKEHLKHLEI 1180
             PQGHY WNV+P GL  AP I+QR MD  F+ +  F  VY+DDIL+ S N ++HL H+ +
Sbjct: 358  CPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAM 417

Query: 1181 FSDVCHKEGLVLSEKKAVIATRQIEFLGIEIDE 1279
                C++ G++LS+KKA +  ++I FLG+EIDE
Sbjct: 418  ILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 450


>sp|P03556.1|POL_CAMVD RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic
            protease; Includes: RecName: Full=Endonuclease; Includes:
            RecName: Full=Reverse transcriptase
          Length = 674

 Score =  239 bits (610), Expect = 2e-60
 Identities = 137/393 (34%), Positives = 217/393 (55%), Gaps = 2/393 (0%)
 Frame = +2

Query: 107  PPIYFHDTGADILLGNNFLQTFKRFTQENETRRLIFTTLCDHKIIVQRLREAFYRKMPIN 286
            P +Y  ++G D ++GNNF Q ++ F Q   T R+IFT    + + + +L  A        
Sbjct: 103  PTVYQQESGIDFIIGNNFCQLYEPFIQF--TDRVIFTKDRTYPVHIAKLTRAV------- 153

Query: 287  FRSKRGDEAKLRNPKMADRRKFGEAL-LSYRQFGSIQKDQKIWDNNLYSFRVQGEERVTP 463
               + G E  L + K   + +  E + +S  +   + + +++ +  L+            
Sbjct: 154  ---RVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLF------------ 198

Query: 464  EAIAELWMSLMENPQSDVTIEEQISLEDIKKKIQRNYNEDPLAWWDKNELKASLKVK-PG 640
                             +T +    +E++ +K+      DP     K  +KAS+K+  P 
Sbjct: 199  -----------------ITQQRMQKIEELLEKVCSENPLDPNK--TKQWMKASIKLSDPS 239

Query: 641  KEYEFVRFKPILMNQEDREDMQKILKEHLDLKLISPGVSPYSSPGFLVRNHGEIKRGKPR 820
            K    ++ KP+  +  DRE+  K +KE LDLK+I P  SP+ +P FLV N  E +RGK R
Sbjct: 240  KA---IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 296

Query: 821  LVINYKGINNILEFDGYYIPSREHLVNCIKGAKIFSKFDCKSGFYQIKMEEESKKFTAFS 1000
            +V+NYK +N     D Y  P+++ L+  I+G KIFS FDCKSGF+Q+ +++ES+  TAF+
Sbjct: 297  MVVNYKAMNKATVGDAYNPPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFT 356

Query: 1001 TPQGHYIWNVMPMGLANAPQIYQRKMDNLFKDYFSFMFVYIDDILIASKNMKEHLKHLEI 1180
             PQGHY WNV+P GL  AP I+QR MD  F+ +  F  VY+DDIL+ S N ++HL H+ +
Sbjct: 357  CPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAM 416

Query: 1181 FSDVCHKEGLVLSEKKAVIATRQIEFLGIEIDE 1279
                C++ G++LS+KKA +  ++I FLG+EIDE
Sbjct: 417  ILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 449