BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00020243
         (497 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer...    85   9e-15
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...    85   9e-15
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras...    82   7e-14
ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2, ch...    76   5e-12
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...    71   1e-10
ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...    65   1e-08
ref|XP_002533596.1| conserved hypothetical protein [Ricinus comm...    57   2e-06
emb|CAC80138.1| DNA-dependent RNA polymerase [Spinacia oleracea]       57   2e-06
gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus pe...    57   3e-06

>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
           sylvestris] gi|17221595|dbj|BAB78465.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 1020

 Score = 85.1 bits (209), Expect = 9e-15
 Identities = 49/106 (46%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
 Frame = -1

Query: 320 MCSSKTPFSFSFEIDGLRTPFHKPVDI-LNPHKSSTVMWRNIAKQVSSRTPSKLFRNSHS 144
           M S+KTP S + +++       KP  + +NP+ +S +MWRNI KQ+SSRTP KL  +S  
Sbjct: 1   MSSTKTPISLTIKLNQFTD---KPTGLDINPYHNSPIMWRNIIKQLSSRTPQKLLFSSK- 56

Query: 143 LSRTCSFLGFGQDSVYPDKCKSRSLFELHSSSNVCFPILGFQKIGD 6
            +RT SFLGFGQDS++ D  K RSL  + S SN+   ++GFQ +G+
Sbjct: 57  -NRTYSFLGFGQDSIFKDNTKFRSLIPI-SCSNI---VMGFQNLGE 97


>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
           AltName: Full=T7 bacteriophage-type single subunit RNA
           polymerase 2; Flags: Precursor
           gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
           [Nicotiana sylvestris]
          Length = 1020

 Score = 85.1 bits (209), Expect = 9e-15
 Identities = 49/106 (46%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
 Frame = -1

Query: 320 MCSSKTPFSFSFEIDGLRTPFHKPVDI-LNPHKSSTVMWRNIAKQVSSRTPSKLFRNSHS 144
           M S+KTP S + +++       KP  + +NP+ +S +MWRNI KQ+SSRTP KL  +S  
Sbjct: 1   MSSTKTPISLTIKLNQFTD---KPTGLDINPYHNSPIMWRNIIKQLSSRTPQKLLFSSK- 56

Query: 143 LSRTCSFLGFGQDSVYPDKCKSRSLFELHSSSNVCFPILGFQKIGD 6
            +RT SFLGFGQDS++ D  K RSL  + S SN+   ++GFQ +G+
Sbjct: 57  -NRTYSFLGFGQDSIFKDNTKFRSLIPI-SCSNI---VMGFQNLGE 97


>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial; AltName:
           Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
           single subunit RNA polymerase 2B; Flags: Precursor
           gi|21425665|emb|CAC95020.1| mitochondrial and
           chloroplast RNA polymerase [Nicotiana tabacum]
          Length = 1021

 Score = 82.0 bits (201), Expect = 7e-14
 Identities = 49/106 (46%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
 Frame = -1

Query: 320 MCSSKTPFSFSFEIDGLRTPFHKPVDI-LNPHKSSTVMWRNIAKQVSSRTPSKLFRNSHS 144
           M S+KTP S + +++       KP  + +N + +S +MWRNI KQ+SSRTP KL  +S  
Sbjct: 1   MSSTKTPISLTIKLNQFTD---KPTGLDINRYHNSPIMWRNIIKQLSSRTPQKLLFSSK- 56

Query: 143 LSRTCSFLGFGQDSVYPDKCKSRSLFELHSSSNVCFPILGFQKIGD 6
            +RT SFLGFGQDSV+ D  K RSL  + S SN+   ++GFQ +G+
Sbjct: 57  -NRTYSFLGFGQDSVFKDNTKFRSLIPI-SCSNI---VMGFQNLGE 97


>ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial-like [Solanum tuberosum]
          Length = 1019

 Score = 75.9 bits (185), Expect = 5e-12
 Identities = 48/108 (44%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
 Frame = -1

Query: 320 MCSSKTPFSFSFEID---GLRTPFHKPVDILNPHKSSTVMWRNIAKQVSSRTPSKLFRNS 150
           M  +KTP S + + +    L T         NP+++S +MWRNI KQ SSRTP K+   S
Sbjct: 1   MSCTKTPISLTIKFNQFTNLET---------NPYQNSPIMWRNIVKQFSSRTPQKILLTS 51

Query: 149 HSLSRTCSFLGFGQDSVYPDKCKSRSLFELHSSSNVCFPILGFQKIGD 6
              +RT SFLGFGQDSV+ DK   RS   + S SN  F  +GFQ +G+
Sbjct: 52  K--NRTYSFLGFGQDSVFKDKRILRSFIPV-SCSNSGFLEMGFQNLGE 96


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial [Vitis vinifera]
           gi|298204431|emb|CBI16911.3| unnamed protein product
           [Vitis vinifera]
          Length = 1035

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 48/111 (43%), Positives = 64/111 (57%), Gaps = 5/111 (4%)
 Frame = -1

Query: 320 MCSSKTPF---SFSFEIDGLRTPFHKPVDIL-NPHKSSTVMWRNIAKQVSSRTPSK-LFR 156
           M S KTP    +   ++D L   F KP +   NP K  TVMWRNIAK+   R P K ++ 
Sbjct: 1   MSSGKTPILSANLGRDLD-LIISFEKPTNFRPNPLKKPTVMWRNIAKRAIPRAPRKCVYL 59

Query: 155 NSHSLSRTCSFLGFGQDSVYPDKCKSRSLFELHSSSNVCFPILGFQKIGDI 3
           +S  LSR  SFLGF QD ++P+  K    FE  S S+  F  +GF++IG+I
Sbjct: 60  DSQPLSRRYSFLGFSQDLIFPEIMKF-GTFEPSSCSSSGFSEMGFRRIGEI 109


>ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial-like [Solanum lycopersicum]
          Length = 1022

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 42/106 (39%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
 Frame = -1

Query: 320 MCSSKTPFSFSFEIDGLRTPFHKPVDI-LNPHKSSTVMWRNIAKQVSSRTPSKLFRNSHS 144
           M  +KTP S +   D          D+  NP+  S +MWRNI KQ S+RTP K+   S  
Sbjct: 1   MSCTKTPISLTIRFDQF-------TDLETNPYHISPIMWRNIVKQFSTRTPQKILLTSK- 52

Query: 143 LSRTCSFLGFGQDSVYPDKCKSRSLFELHSSSNVCFPILGFQKIGD 6
            +   S+LGFG  SV+ DK   RS   + S SN  F  +GFQ +G+
Sbjct: 53  -NHAYSYLGFGLHSVFKDKRTLRSFIPV-SCSNSGFLEMGFQNLGE 96


>ref|XP_002533596.1| conserved hypothetical protein [Ricinus communis]
           gi|223526525|gb|EEF28787.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 395

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 31/70 (44%), Positives = 41/70 (58%)
 Frame = -1

Query: 212 MWRNIAKQVSSRTPSKLFRNSHSLSRTCSFLGFGQDSVYPDKCKSRSLFELHSSSNVCFP 33
           MWRN+AKQ  SR  SK   +SH LS T SFLG  Q+  + DKCK   L+        C  
Sbjct: 1   MWRNVAKQTISRAQSKSL-SSHPLSSTYSFLGLSQEPSFTDKCKLSPLY-------ACSS 52

Query: 32  ILGFQKIGDI 3
           ++GF ++G+I
Sbjct: 53  LVGFCRLGEI 62


>emb|CAC80138.1| DNA-dependent RNA polymerase [Spinacia oleracea]
          Length = 1036

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 35/78 (44%), Positives = 45/78 (57%)
 Frame = -1

Query: 242 ILNPHKSSTVMWRNIAKQVSSRTPSKLFRNSHSLSRTCSFLGFGQDSVYPDKCKSRSLFE 63
           ++NP   ST+MWRN AKQ  SRTP+   R   S+SR+ SFLG   D  + D+ K R  FE
Sbjct: 31  LINPCFDSTIMWRNFAKQAISRTPNLCLR-KFSISRSYSFLGGTHDCGFSDRLKFRP-FE 88

Query: 62  LHSSSNVCFPILGFQKIG 9
           L    N  F  +GF + G
Sbjct: 89  LGFCKNRSFSEVGFCREG 106


>gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
          Length = 1024

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 38/87 (43%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
 Frame = -1

Query: 260 FHKPVDI-LNPHKSSTVMWRNIAKQVSSRTPSKLFRNSHSLSRTCSFLGFGQDSVYPDKC 84
           FH P+    NP   ST +WRN AKQ  SR   +   NS S SR  S LG  Q+SV+P   
Sbjct: 19  FHSPLIFHKNPSMISTTVWRNFAKQAISR-KQRFHINSQSFSRAYSLLGICQESVFPGNF 77

Query: 83  KSRSLFELHSSSNVCFPILGFQKIGDI 3
           K    FEL S S++ F  +GF+  G I
Sbjct: 78  KP---FELSSCSSLRFSEVGFRGKGAI 101