BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00019599
         (1162 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]       442   e-121
ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   436   e-120
ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   436   e-120
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...   431   e-118
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...   427   e-117
gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus pe...   367   5e-99
ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast ...   365   2e-98
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   353   7e-95
gb|EOY31498.1| DNA/RNA polymerases superfamily protein isoform 3...   348   2e-93
gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1...   348   2e-93
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   347   7e-93
ref|XP_002325119.1| DNA-directed RNA polymerase family protein [...   346   1e-92
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   344   3e-92
ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Popu...   344   3e-92
ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   342   2e-91
ref|XP_006453567.1| hypothetical protein CICLE_v10007333mg [Citr...   328   2e-87
ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citr...   328   2e-87
emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]      328   3e-87
ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   325   3e-86
gb|EXB42920.1| DNA-directed RNA polymerase 3 [Morus notabilis]        301   3e-79

>gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]
          Length = 952

 Score =  442 bits (1136), Expect = e-121
 Identities = 227/335 (67%), Positives = 266/335 (79%), Gaps = 2/335 (0%)
 Frame = -2

Query: 999  LKLPSLYNPAHLLPPPISDSSDDNFPENPEKLLNLQVMPNG-FRSSLTKESGDRV-FIQD 826
            +KLPSL+ PA  L  P+SDSSDDNF ENP  L  + V PNG   S  +KE  DRV  IQD
Sbjct: 23   VKLPSLHTPAPFLSHPVSDSSDDNFTENPGNLATMLVTPNGGISSEFSKELRDRVVIIQD 82

Query: 825  PPWISSLFMKSLLFRGRNRSGVKIEFKEMERRKYYLLRRRQIKAETEAWXXXXXXXXXXX 646
            PPWISSL++KSLLFR RNR  VKIEFKEMER KYY LRRRQIKAETEAW           
Sbjct: 83   PPWISSLYIKSLLFRNRNRCDVKIEFKEMERHKYYELRRRQIKAETEAWENMVKEYKELE 142

Query: 645  XXXXXRKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDALPADKMAV 466
                 +K+APNLP+ KKLMLGWFEPL EAI  EQ++Q+ KKN+ AFAPY+D+LP + MAV
Sbjct: 143  KEMCEKKMAPNLPYFKKLMLGWFEPLTEAIRTEQSLQKPKKNRIAFAPYIDSLPPESMAV 202

Query: 465  IVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRMEVGAESQE 286
            IVMHKIMGLLMMGGK+DRC+RVVEAA+QIG AIE EVRIH+FLE+T KHQ+  V +ESQE
Sbjct: 203  IVMHKIMGLLMMGGKQDRCIRVVEAALQIGKAIEQEVRIHAFLEKT-KHQKEAVASESQE 261

Query: 285  DSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLLTQSAYVQ 106
            +S ++AA LRKRVK+L++R R +EVQKLV+SE  + W R+ QAKLGCCLI LLTQSAYVQ
Sbjct: 262  NSCEKAANLRKRVKNLVRRGRGVEVQKLVKSENHEPWTREIQAKLGCCLINLLTQSAYVQ 321

Query: 105  PPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKK 1
            PPV+QSADSPPDVRPAFRH FKIATRE  Q++V++
Sbjct: 322  PPVSQSADSPPDVRPAFRHFFKIATREPRQTVVRR 356


>ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            tuberosum]
          Length = 1015

 Score =  436 bits (1122), Expect = e-120
 Identities = 226/389 (58%), Positives = 291/389 (74%), Gaps = 2/389 (0%)
 Frame = -2

Query: 1161 ASTTPFSPSPRAQFHQPTNSSPW-KPNKNFISMSTPEIXXXXXXXXXXXXXXXQTLKLPS 985
            AS+  +SPSP         SS W K  K+  +     I               +TLKLP 
Sbjct: 39   ASSASYSPSPP--------SSQWRKTQKSQKNCFLYGIHSQEFLKLSQTSSFPKTLKLPV 90

Query: 984  LYNPAHLLPPPISDSSDDNFPENPEKLLNLQVMPNGFRSSLTKESGDRVFIQDPPWISSL 805
            +  P  +    +  S+D+N  EN E+L+NLQ +PNG+   L KES  RVFIQDPPW+SSL
Sbjct: 91   IQLPITVHSEVVCVSTDENLTENLEELVNLQKIPNGYPLVLQKESNKRVFIQDPPWVSSL 150

Query: 804  FMKSLLFRGRNRSGVKIEFKEMERRKYY-LLRRRQIKAETEAWXXXXXXXXXXXXXXXXR 628
            FM SL  R +   GV+ EF+E+ERR+ Y +LRRRQIKAETEAW                +
Sbjct: 151  FMNSLFVRAKQVKGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEK 210

Query: 627  KLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDALPADKMAVIVMHKI 448
            KLAPNLP+VKKL+LGWFEPLR+AIEKEQN + ++K++ A+AP++D+LPADKMAVIVMHK+
Sbjct: 211  KLAPNLPYVKKLLLGWFEPLRQAIEKEQNAEMTQKHRTAYAPHIDSLPADKMAVIVMHKL 270

Query: 447  MGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRMEVGAESQEDSIKEA 268
            MGLLMMGGKE+RCV+VV+AAVQIG+A+E+EVRIH+F+E+TKKHQ+   GA+ QED  +E 
Sbjct: 271  MGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFMEKTKKHQKHMSGAQGQEDMSRET 330

Query: 267  AILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLLTQSAYVQPPVNQS 88
             ILRKRVKSLIKRNRV+EV+KL++SEE +SWGRDTQAKLGC L++LLT++AYVQPPV+QS
Sbjct: 331  MILRKRVKSLIKRNRVVEVRKLMQSEEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQS 390

Query: 87   ADSPPDVRPAFRHIFKIATRESGQSLVKK 1
            AD+PPD+RPAFRH+F+IATR+ G+++VKK
Sbjct: 391  ADTPPDIRPAFRHVFRIATRDPGKNIVKK 419


>ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            lycopersicum]
          Length = 1007

 Score =  436 bits (1122), Expect = e-120
 Identities = 224/389 (57%), Positives = 292/389 (75%), Gaps = 2/389 (0%)
 Frame = -2

Query: 1161 ASTTPFSPSPRAQFHQPTNSSPW-KPNKNFISMSTPEIXXXXXXXXXXXXXXXQTLKLPS 985
            AS+  +SP+P         SS W K  K+  + +   I               +TLKLP 
Sbjct: 31   ASSASYSPTPA--------SSQWRKAQKSQKNCTFHGIYNQEFLKLSQTSSFPKTLKLPI 82

Query: 984  LYNPAHLLPPPISDSSDDNFPENPEKLLNLQVMPNGFRSSLTKESGDRVFIQDPPWISSL 805
            +  P  +    +  S+D+N  EN E+L+NLQ +PNG+   L KES  RVFIQDPPW+SSL
Sbjct: 83   IQLPITVHSEVVCVSTDENLTENLEELVNLQKIPNGYPLVLQKESNKRVFIQDPPWVSSL 142

Query: 804  FMKSLLFRGRNRSGVKIEFKEMERRKYY-LLRRRQIKAETEAWXXXXXXXXXXXXXXXXR 628
            FM +L  R +   GV+ EF+E+ERR+ Y +LRRRQIKAETEAW                +
Sbjct: 143  FMNNLFVRAKQVKGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEK 202

Query: 627  KLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDALPADKMAVIVMHKI 448
            KLAPNLP+VKKLMLGWFEPLR+AIE+EQN + ++K++ A+AP++D+LPADKMAVIVMHK+
Sbjct: 203  KLAPNLPYVKKLMLGWFEPLRQAIEREQNAEMTQKHRTAYAPHIDSLPADKMAVIVMHKL 262

Query: 447  MGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRMEVGAESQEDSIKEA 268
            MGLLMMGGKE+RCV+VV+AAVQIG+A+E+EVRIH+F+E+TKKHQ+   GA+ QED  +E 
Sbjct: 263  MGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFMEKTKKHQKHMTGAQGQEDMSRET 322

Query: 267  AILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLLTQSAYVQPPVNQS 88
             ILRKRVKSLIKRNRV+EV+KL++SEE +SWGRDTQAKLGC L++LLT++AYVQPPV+QS
Sbjct: 323  MILRKRVKSLIKRNRVVEVRKLMQSEEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQS 382

Query: 87   ADSPPDVRPAFRHIFKIATRESGQSLVKK 1
            AD+PPD+RPAFRH+F+IATR+ G+++VKK
Sbjct: 383  ADTPPDIRPAFRHVFRIATRDPGKNIVKK 411


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase
            [Nicotiana tabacum]
          Length = 977

 Score =  431 bits (1109), Expect = e-118
 Identities = 230/390 (58%), Positives = 292/390 (74%), Gaps = 3/390 (0%)
 Frame = -2

Query: 1161 ASTTPFSPSPRAQFHQPTNSSPWKPNKNFISMSTPEIXXXXXXXXXXXXXXXQTLKLPSL 982
            AST  +SPSP +Q+   T   P +   NF  +   E                +TLKLP +
Sbjct: 2    ASTASYSPSPTSQWR--TQKLPKR--FNFYVIHNQEFGKLSQSSSLSTSSFPKTLKLPVI 57

Query: 981  YNPAHLLPPP--ISDSSDDNFPENPEKLLNLQVMPNGFRSSLTKESGDRVFIQDPPWISS 808
            + P + +     +  S+D+N     E+L+NLQ +PNGF   L KES  RVFIQDPPW+SS
Sbjct: 58   HMPINNIQSQTTVCVSTDENL----EELVNLQKIPNGF---LNKESNKRVFIQDPPWVSS 110

Query: 807  LFMKSLLFRGRNRSGVKIEFKEMERRKYY-LLRRRQIKAETEAWXXXXXXXXXXXXXXXX 631
            LFM SL  R +   GV+ EF+E+ERR+ Y +LRRRQIKAETEAW                
Sbjct: 111  LFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCE 170

Query: 630  RKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDALPADKMAVIVMHK 451
            +KLAPNLP+VKKL+LGWFEPLR+AIEKEQN + + K++AAFAP++D+LPADKMAVIVMHK
Sbjct: 171  KKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIVMHK 230

Query: 450  IMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRMEVGAESQEDSIKE 271
            +MGLLMMGGKE+RCV+VV+AAVQIG+A+E+EVRIH+FLE+TKK Q+   GA+SQED  KE
Sbjct: 231  LMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSKE 290

Query: 270  AAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLLTQSAYVQPPVNQ 91
              ILRKRVKSLIKRNRV+EV+KL++SEE +SWGRDTQAKLGC L++LLT++AYVQ PV+Q
Sbjct: 291  TMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQRPVDQ 350

Query: 90   SADSPPDVRPAFRHIFKIATRESGQSLVKK 1
            SAD+PPD+RPAFRH+FKIATR+ G+++VKK
Sbjct: 351  SADTPPDIRPAFRHVFKIATRDPGKNIVKK 380


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
            Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 3; Flags: Precursor
            gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
            Full=DNA-directed RNA polymerase 3A, chloroplastic;
            AltName: Full=NictaRpoT3-syl; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3A;
            Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
            RNA polymerase [Nicotiana sylvestris]
            gi|21425679|emb|CAC95027.2| plastid RNA polymerase
            [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 977

 Score =  427 bits (1098), Expect = e-117
 Identities = 229/391 (58%), Positives = 290/391 (74%), Gaps = 4/391 (1%)
 Frame = -2

Query: 1161 ASTTPFSPSPRAQFHQPTNSSPWKPNKNFISMSTPEIXXXXXXXXXXXXXXXQTLKLPSL 982
            AST  +SPSP +Q+   T   P +   NF  +   E                +TLKLP +
Sbjct: 2    ASTASYSPSPTSQWR--TQKLPKR--FNFYVIHNQEFGKLSQSSSLPTSSFPKTLKLPVI 57

Query: 981  YNPAH---LLPPPISDSSDDNFPENPEKLLNLQVMPNGFRSSLTKESGDRVFIQDPPWIS 811
              P +        +  S+D+N     E+L+NLQ + NG    LTKES  RVFIQDPPW+S
Sbjct: 58   QMPINNNIQSQTTVCVSTDENL----EELVNLQKIANGV---LTKESNKRVFIQDPPWVS 110

Query: 810  SLFMKSLLFRGRNRSGVKIEFKEMERRKYY-LLRRRQIKAETEAWXXXXXXXXXXXXXXX 634
            SLFM SL  R +   GV+ EF+E+ERR+ Y +LRRRQIKAETEAW               
Sbjct: 111  SLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMC 170

Query: 633  XRKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDALPADKMAVIVMH 454
             +KLAPNLP+VKKL+LGWFEPLR+AIEKEQN + + K++AAFAP++D+LPADKMAVIVMH
Sbjct: 171  EKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIVMH 230

Query: 453  KIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRMEVGAESQEDSIK 274
            K+MGLLMMGGKE+RCV+VV+AAVQIG+A+E+EVRIH+FLE+TKK Q+   GA+SQED  +
Sbjct: 231  KLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSR 290

Query: 273  EAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLLTQSAYVQPPVN 94
            E  ILRKRVKSLIKRNRV+EV+KL++SEE +SWGRDTQAKLGC L++LLT++AYVQPPV+
Sbjct: 291  ETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQPPVD 350

Query: 93   QSADSPPDVRPAFRHIFKIATRESGQSLVKK 1
            QSAD+PPD+RPAFRH+F+IATR+ G+S+VKK
Sbjct: 351  QSADTPPDIRPAFRHVFRIATRDPGKSIVKK 381


>gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score =  367 bits (942), Expect = 5e-99
 Identities = 207/390 (53%), Positives = 255/390 (65%), Gaps = 4/390 (1%)
 Frame = -2

Query: 1161 ASTTPFSPSPRAQFHQPTNSSPW----KPNKNFISMSTPEIXXXXXXXXXXXXXXXQTLK 994
            AST  FSPSP+AQ +  T SS W    K N  F+  ST                    L 
Sbjct: 2    ASTASFSPSPQAQTY--TCSSRWSKAPKLNHKFLFSSTSN---SLFFKPSHSSSTHFPLN 56

Query: 993  LPSLYNPAHLLPPPISDSSDDNFPENPEKLLNLQVMPNGFRSSLTKESGDRVFIQDPPWI 814
            L     P H+  PP+ DS  DN  EN    +N Q+  + F     +ES  R+FIQDPPWI
Sbjct: 57   LKPPPEPVHI--PPLRDSIQDNIVENS---MNFQIPMSEFHLITPQESAPRIFIQDPPWI 111

Query: 813  SSLFMKSLLFRGRNRSGVKIEFKEMERRKYYLLRRRQIKAETEAWXXXXXXXXXXXXXXX 634
            +SLF+K +  R      +K+E KE+ERR Y +LRRRQIKAETEAW               
Sbjct: 112  ASLFLKGIYKRANQE--LKLESKEIERRNYNVLRRRQIKAETEAWERMVDEYKDLEKVMR 169

Query: 633  XRKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDALPADKMAVIVMH 454
             +KLAPNLP+VK L LGWFEPLREAI +EQ  Q++KK+KAAFAP++D LPADKMA+IVMH
Sbjct: 170  EKKLAPNLPYVKALFLGWFEPLREAIAREQKTQQTKKHKAAFAPHIDLLPADKMALIVMH 229

Query: 453  KIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRMEVGAESQEDSIK 274
            K+MGL+M+G  +D CV+VV+AAV IG+AIE EVRIHSFLE+TK  Q+ + G   ++   K
Sbjct: 230  KMMGLVMVGN-QDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKNLQKKKTGVADEDGLSK 288

Query: 273  EAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLLTQSAYVQPPVN 94
            E  ILRKRV  LI+R R+ EVQKL+  EE K WGRD QAKLG  LI+LLT++AYVQPP++
Sbjct: 289  EKEILRKRVNGLIRRKRLNEVQKLLIKEEMKPWGRDKQAKLGSRLIELLTETAYVQPPLS 348

Query: 93   QSADSPPDVRPAFRHIFKIATRESGQSLVK 4
            Q ADSPPDVRPAFRH FK   +  GQ +VK
Sbjct: 349  QLADSPPDVRPAFRHRFKAVAKSPGQKIVK 378


>ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast precursor, putative
            [Ricinus communis] gi|223532193|gb|EEF33998.1|
            DNA-directed RNA polymerase 3B, chloroplast precursor,
            putative [Ricinus communis]
          Length = 1000

 Score =  365 bits (936), Expect = 2e-98
 Identities = 210/393 (53%), Positives = 259/393 (65%), Gaps = 14/393 (3%)
 Frame = -2

Query: 1137 SPRAQFHQ-------PTNSSPWKPNKNFISMSTPEIXXXXXXXXXXXXXXXQTLKLPSLY 979
            S RAQF         P  +   K +KN   +S P                  T K P   
Sbjct: 2    SHRAQFQYQNWPTKPPKITKTQKNHKNLHFLSVPTSHSLFTNSLSSSSFPLIT-KFPRNL 60

Query: 978  NPAHLLPPPISDSSDDNFPENP-------EKLLNLQVMPNGFRSSLTKESGDRVFIQDPP 820
             P H L   + +   ++  ENP       E L+ L +  N     L +ES  RVFIQDPP
Sbjct: 61   LPFHPLHDAVEEHLLEDLVENPIGNHQKLETLIKLDLPTNHNHQVLPEESSRRVFIQDPP 120

Query: 819  WISSLFMKSLLFRGRNRSGVKIEFKEMERRKYYLLRRRQIKAETEAWXXXXXXXXXXXXX 640
            WIS+LF K L ++  N+  VK+EFK++E+RKY LLRRRQI+ ETEAW             
Sbjct: 121  WISALFFKGL-YKIPNKE-VKLEFKDIEKRKYNLLRRRQIREETEAWERMVEEYKALVKE 178

Query: 639  XXXRKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDALPADKMAVIV 460
               RKLAPNLP+VK L LGWFEPL+E I+ EQN+QRSKKNKAAFAP+++ LPADKMAVIV
Sbjct: 179  MCERKLAPNLPYVKGLFLGWFEPLKEGIKSEQNLQRSKKNKAAFAPHIELLPADKMAVIV 238

Query: 459  MHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRMEVGAESQEDS 280
            MHK++GLLM+G  ED CV +V+AAVQIG+AIE EVRIH+FLE+TK +QR +  + +QE  
Sbjct: 239  MHKMVGLLMVG-HEDGCVPLVQAAVQIGMAIEQEVRIHNFLEKTKNYQRKKTISGAQESL 297

Query: 279  IKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLLTQSAYVQPP 100
             KE  ILRKRV SLI+R ++IEVQKLV++EE K WGRDTQAKLG  LI+LLT++A+VQPP
Sbjct: 298  GKEKEILRKRVNSLIRRKKLIEVQKLVKNEEMKPWGRDTQAKLGSRLIELLTETAFVQPP 357

Query: 99   VNQSADSPPDVRPAFRHIFKIATRESGQSLVKK 1
            VNQSAD PPDVRPAFRH F+I     GQ +VKK
Sbjct: 358  VNQSADVPPDVRPAFRHRFRIVKNNPGQKIVKK 390


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score =  353 bits (906), Expect = 7e-95
 Identities = 199/384 (51%), Positives = 247/384 (64%), Gaps = 2/384 (0%)
 Frame = -2

Query: 1161 ASTTPFSPSPRAQFHQPTNSSPWKPNKNFISMSTPEIXXXXXXXXXXXXXXXQTLKLPSL 982
            AST  F P P A+  +P      KP++    + T                   +    + 
Sbjct: 2    ASTAVFLPIPHAKIQKPKKLDHHKPHRTLPVLFTSNPSPHFHTSTISKNSLSSSSFRHNF 61

Query: 981  YNPAHLLPPPISDSSDDNFPENPEKLLNLQVMPNGFRSSL-TKESGDRVFIQDPPWISSL 805
            ++P+H      S +S+      P    N  +      S++  KES  R+F+QDPPWISS 
Sbjct: 62   HSPSH------SSNSEAQCHALPLSPTNNSIETLQDSSNIQVKESIPRIFVQDPPWISSF 115

Query: 804  FMKSLLFRGRNRS-GVKIEFKEMERRKYYLLRRRQIKAETEAWXXXXXXXXXXXXXXXXR 628
                   R R     VK+EF+E ERR Y LLRRRQ+KAETEAW                +
Sbjct: 116  LFHDWCERNRRTGQNVKLEFRETERRNYGLLRRRQVKAETEAWERMVEEYREIEREMCEK 175

Query: 627  KLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDALPADKMAVIVMHKI 448
            KLAPNLP+VK L LGWFEPLREAI+KEQ  QR+KK KAA+AP+++ LPADKMAVIVMHK+
Sbjct: 176  KLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELLPADKMAVIVMHKM 235

Query: 447  MGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRMEVGAESQEDSIKEA 268
            MGL+MMG  E+ CVRVV+AAVQIG+AIE EVRIHSFLE+TK  +R +    SQE  ++E 
Sbjct: 236  MGLVMMG-HEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQE-GLREK 293

Query: 267  AILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLLTQSAYVQPPVNQS 88
             ILRKRVKS I++ ++IEVQKLV++EE   WGRDTQAKLG  LI+LLT++AYVQ PVNQS
Sbjct: 294  EILRKRVKSFIRKKKIIEVQKLVKNEEITPWGRDTQAKLGSRLIELLTETAYVQTPVNQS 353

Query: 87   ADSPPDVRPAFRHIFKIATRESGQ 16
            AD PPDVRPAFRH FK  T+ESGQ
Sbjct: 354  ADCPPDVRPAFRHTFKTVTKESGQ 377


>gb|EOY31498.1| DNA/RNA polymerases superfamily protein isoform 3 [Theobroma cacao]
          Length = 927

 Score =  348 bits (893), Expect = 2e-93
 Identities = 201/389 (51%), Positives = 256/389 (65%), Gaps = 2/389 (0%)
 Frame = -2

Query: 1161 ASTTPFSPSPRAQFHQPTNSSPWKPNKNFISMSTPEIXXXXXXXXXXXXXXXQTLKLPSL 982
            AST   S +   Q   PT   P  P K       P +                 L L S 
Sbjct: 2    ASTASLSLTQTPQIQYPTRRKPPLPQKPH---KKPLLFLPKPTLHPSLVSFPFPLNLNSP 58

Query: 981  YNPAHLLPPPISDSSDDNFPENPEKLLNLQVMPNGFRSSLTKESGDRVFIQDPPWISSLF 802
             NPA   P  + DS  DNF EN E   N  +        L+ ES  R+FIQDPPWIS+LF
Sbjct: 59   PNPARFCP--LHDSLHDNFVENIENPSNFLLPKAQSHQILSPESTPRLFIQDPPWISALF 116

Query: 801  MKSLLFRGRNRSGVKIEFKEMERRKYYLLRRRQIKAETEAWXXXXXXXXXXXXXXXXRKL 622
            +K L ++  N++ VKIE KE+E+RKY LLRRRQ+K ETEAW                +KL
Sbjct: 117  LKGL-YKMTNQT-VKIEHKEIEKRKYNLLRRRQVKEETEAWEKMVEEYRELQREMCEKKL 174

Query: 621  APNLPHVKKLMLGWFEPLREAIEKEQNVQR--SKKNKAAFAPYVDALPADKMAVIVMHKI 448
            APNLP+VK L LGWFEP+REAI +EQ VQ+  SKK +AA+AP+++ LPADKMAVIVMHK+
Sbjct: 175  APNLPYVKGLFLGWFEPMREAIAREQKVQKGKSKKLRAAYAPHIELLPADKMAVIVMHKM 234

Query: 447  MGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRMEVGAESQEDSIKEA 268
            MGL+M G +E+  V+VV+AAV IGVAIE EVRIH+FLE+TK +QR +   E Q  S KE 
Sbjct: 235  MGLVM-GAQENGFVQVVQAAVHIGVAIEQEVRIHNFLEKTKNYQRKKTTDEVQGLS-KEK 292

Query: 267  AILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLLTQSAYVQPPVNQS 88
             IL+KRV SLI+R R++EVQKLV++EE K WGRD QAKLG  L++LLT++AYVQPP++QS
Sbjct: 293  EILKKRVNSLIRRRRLVEVQKLVKNEEIKPWGRDAQAKLGSRLLELLTETAYVQPPIDQS 352

Query: 87   ADSPPDVRPAFRHIFKIATRESGQSLVKK 1
             DSPPDV+PAFRH FK  +++ G+ ++K+
Sbjct: 353  GDSPPDVQPAFRHKFKTISKDPGKKMMKR 381


>gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score =  348 bits (893), Expect = 2e-93
 Identities = 201/389 (51%), Positives = 256/389 (65%), Gaps = 2/389 (0%)
 Frame = -2

Query: 1161 ASTTPFSPSPRAQFHQPTNSSPWKPNKNFISMSTPEIXXXXXXXXXXXXXXXQTLKLPSL 982
            AST   S +   Q   PT   P  P K       P +                 L L S 
Sbjct: 2    ASTASLSLTQTPQIQYPTRRKPPLPQKPH---KKPLLFLPKPTLHPSLVSFPFPLNLNSP 58

Query: 981  YNPAHLLPPPISDSSDDNFPENPEKLLNLQVMPNGFRSSLTKESGDRVFIQDPPWISSLF 802
             NPA   P  + DS  DNF EN E   N  +        L+ ES  R+FIQDPPWIS+LF
Sbjct: 59   PNPARFCP--LHDSLHDNFVENIENPSNFLLPKAQSHQILSPESTPRLFIQDPPWISALF 116

Query: 801  MKSLLFRGRNRSGVKIEFKEMERRKYYLLRRRQIKAETEAWXXXXXXXXXXXXXXXXRKL 622
            +K L ++  N++ VKIE KE+E+RKY LLRRRQ+K ETEAW                +KL
Sbjct: 117  LKGL-YKMTNQT-VKIEHKEIEKRKYNLLRRRQVKEETEAWEKMVEEYRELQREMCEKKL 174

Query: 621  APNLPHVKKLMLGWFEPLREAIEKEQNVQR--SKKNKAAFAPYVDALPADKMAVIVMHKI 448
            APNLP+VK L LGWFEP+REAI +EQ VQ+  SKK +AA+AP+++ LPADKMAVIVMHK+
Sbjct: 175  APNLPYVKGLFLGWFEPMREAIAREQKVQKGKSKKLRAAYAPHIELLPADKMAVIVMHKM 234

Query: 447  MGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRMEVGAESQEDSIKEA 268
            MGL+M G +E+  V+VV+AAV IGVAIE EVRIH+FLE+TK +QR +   E Q  S KE 
Sbjct: 235  MGLVM-GAQENGFVQVVQAAVHIGVAIEQEVRIHNFLEKTKNYQRKKTTDEVQGLS-KEK 292

Query: 267  AILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLLTQSAYVQPPVNQS 88
             IL+KRV SLI+R R++EVQKLV++EE K WGRD QAKLG  L++LLT++AYVQPP++QS
Sbjct: 293  EILKKRVNSLIRRRRLVEVQKLVKNEEIKPWGRDAQAKLGSRLLELLTETAYVQPPIDQS 352

Query: 87   ADSPPDVRPAFRHIFKIATRESGQSLVKK 1
             DSPPDV+PAFRH FK  +++ G+ ++K+
Sbjct: 353  GDSPPDVQPAFRHKFKTISKDPGKKMMKR 381


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 973

 Score =  347 bits (889), Expect = 7e-93
 Identities = 187/335 (55%), Positives = 234/335 (69%), Gaps = 7/335 (2%)
 Frame = -2

Query: 987  SLYNPAHLLPPP-------ISDSSDDNFPENPEKLLNLQVMPNGFRSSLTKESGDRVFIQ 829
            S + P  L PPP       ++DS  DN  EN E  +  QV            S  R+FIQ
Sbjct: 54   STHFPLSLRPPPDPIQFHPLNDSVQDNLVENLENSIKFQV----------PISEPRIFIQ 103

Query: 828  DPPWISSLFMKSLLFRGRNRSGVKIEFKEMERRKYYLLRRRQIKAETEAWXXXXXXXXXX 649
            DPPWI+SLF+K + F+  N+  +K+E KE++RRKY LLRRRQIKAETEAW          
Sbjct: 104  DPPWIASLFLKGM-FKKVNKE-LKVESKEIDRRKYNLLRRRQIKAETEAWEKMVEDYKDL 161

Query: 648  XXXXXXRKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDALPADKMA 469
                  +KLAP+LP+VK L LGWFEPLREAI KEQ  Q++KK+K AFAP++D LPADKMA
Sbjct: 162  ERVMREKKLAPSLPYVKALFLGWFEPLREAIAKEQKAQQTKKHKQAFAPHIDLLPADKMA 221

Query: 468  VIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRMEVGAESQ 289
            +IVMHK+MGL+MMG  +D CV+VV+AAV IG+AIE EVRIHSFLE++K  QR +     +
Sbjct: 222  LIVMHKLMGLVMMGN-QDGCVQVVQAAVHIGMAIEQEVRIHSFLEKSKSLQRKKTSVADE 280

Query: 288  EDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLLTQSAYV 109
            +   KE  ILRKRV  LI+R R++EVQKL++ E+ K WGRDTQAKLG  LI+LLT++A+V
Sbjct: 281  DGLSKEKEILRKRVNGLIRRKRLVEVQKLLKKEDMKPWGRDTQAKLGSRLIELLTETAHV 340

Query: 108  QPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVK 4
            QPP++Q AD PPDVRPAFRH  K A +  GQ LVK
Sbjct: 341  QPPLDQLADGPPDVRPAFRHRLKAAAKSPGQKLVK 375


>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
           gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
           family protein [Populus trichocarpa]
          Length = 882

 Score =  346 bits (887), Expect = 1e-92
 Identities = 180/285 (63%), Positives = 220/285 (77%)
 Frame = -2

Query: 855 ESGDRVFIQDPPWISSLFMKSLLFRGRNRSGVKIEFKEMERRKYYLLRRRQIKAETEAWX 676
           ES  +VFIQDPPWIS+ F K + ++  N+  VK+EFK++E+RKY LLRRRQI+ ETEAW 
Sbjct: 4   ESSKKVFIQDPPWISAHFWKGM-YKLANKK-VKVEFKDIEKRKYNLLRRRQIREETEAWE 61

Query: 675 XXXXXXXXXXXXXXXRKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYV 496
                          RKLAPNLP+VK L+LGWFEPL+EAIEKEQ +++SKK K+AF+P +
Sbjct: 62  RMADEYRGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFSPNI 121

Query: 495 DALPADKMAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQ 316
           + LPADKMAVIVMHK+MGLLM+G  ED CVRVV+AAVQIG+AIE EVRIH+FLE+TK +Q
Sbjct: 122 ELLPADKMAVIVMHKMMGLLMVG-HEDGCVRVVQAAVQIGMAIEQEVRIHNFLEKTKNYQ 180

Query: 315 RMEVGAESQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLI 136
           R +   E QE   KE  +LRKRV SLI+R R++EVQ LV+ +E K W R TQAKLG  LI
Sbjct: 181 RKKTMHEVQETMDKEKEVLRKRVNSLIRRKRLMEVQNLVKQDETKPWSRGTQAKLGSRLI 240

Query: 135 QLLTQSAYVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKK 1
           +LLT++AYVQPPVNQS D PPDVRPAFRHIFK  T+  GQ +VKK
Sbjct: 241 ELLTETAYVQPPVNQSEDIPPDVRPAFRHIFKTLTKNPGQKIVKK 285


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score =  344 bits (883), Expect = 3e-92
 Identities = 183/318 (57%), Positives = 231/318 (72%)
 Frame = -2

Query: 954  PISDSSDDNFPENPEKLLNLQVMPNGFRSSLTKESGDRVFIQDPPWISSLFMKSLLFRGR 775
            P++DS  +NF E  +  +NLQ+  +        ES  R+FIQDPPWI+SLF+K L    +
Sbjct: 66   PLADSVHENFTETLDNSMNLQIPISEIHQITRGESSKRIFIQDPPWIASLFLKGLYKCVQ 125

Query: 774  NRSGVKIEFKEMERRKYYLLRRRQIKAETEAWXXXXXXXXXXXXXXXXRKLAPNLPHVKK 595
                VK+EF E+E+RKY LLRRRQIKAETEAW                +KLAPNLP+VKK
Sbjct: 126  KE--VKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKLAPNLPYVKK 183

Query: 594  LMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDALPADKMAVIVMHKIMGLLMMGGKED 415
            L LGWFEPL+ AIE+EQ  QRSKK KAAFAP+++ L ADKMAVIVM+K+MGLLMM   +D
Sbjct: 184  LFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMMAA-QD 242

Query: 414  RCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRMEVGAESQEDSIKEAAILRKRVKSLI 235
             CV+VV+AAVQIG AIE EVRI S LE+ + +QR +V A++ E   KE  +LRK+V  LI
Sbjct: 243  GCVQVVQAAVQIGGAIEQEVRIQSILEKARSNQRTKVRADT-ECLTKEKEVLRKQVNGLI 301

Query: 234  KRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLLTQSAYVQPPVNQSADSPPDVRPAF 55
            +R ++ EVQKL++ EEFK+WGRDTQAKLG  LI+LL +SA++QPPV+QSADSPPD+RPAF
Sbjct: 302  RRRKLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDIRPAF 361

Query: 54   RHIFKIATRESGQSLVKK 1
             H FK   +  GQ+ VKK
Sbjct: 362  WHGFKPVAKTPGQNFVKK 379


>ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Populus trichocarpa]
            gi|222854390|gb|EEE91937.1| hypothetical protein
            POPTR_0006s19490g [Populus trichocarpa]
          Length = 982

 Score =  344 bits (883), Expect = 3e-92
 Identities = 203/398 (51%), Positives = 254/398 (63%), Gaps = 11/398 (2%)
 Frame = -2

Query: 1161 ASTTPFS-------PSPRAQFHQPTNSSPWKPNKNFISMSTPEIXXXXXXXXXXXXXXXQ 1003
            ASTTPFS        S   +FH+P  +  +  N +  S+S P +                
Sbjct: 2    ASTTPFSIQHPTWTTSKTLKFHEPYKNLHFLSNPSSHSLSNPSLSSSSFPLNPKL----- 56

Query: 1002 TLKLPSLYNPAHLLPPPISDSSDDNFPENPE--KLLNLQVMPN--GFRSSLTKESGDRVF 835
                 S+ NP  LL  P+ DSS D   E+ E   + N Q +     F   +  ES  RVF
Sbjct: 57   -----SILNPP-LLFHPLHDSSHDRLLEDFEIPTINNHQKLETLIKFDQIVHGESSKRVF 110

Query: 834  IQDPPWISSLFMKSLLFRGRNRSGVKIEFKEMERRKYYLLRRRQIKAETEAWXXXXXXXX 655
            I+D PWIS+L+ K        +  VK+E K++E+RKY LLRRRQI+ ETEAW        
Sbjct: 111  IRDSPWISALYWKGTHKIANKK--VKLELKDIEKRKYNLLRRRQIREETEAWERMAEEYT 168

Query: 654  XXXXXXXXRKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDALPADK 475
                    RKLAPNLP+VK L LGWFEPL+EAIE+EQ +++SKK K+AF+P ++ LPADK
Sbjct: 169  GLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIEREQKLEKSKKQKSAFSPNIELLPADK 228

Query: 474  MAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRMEVGAE 295
            MAVIVMHK+MGL+M+G  ED CVRVV+AAVQIG+AIE EVRIH+FLE+TK HQR +   +
Sbjct: 229  MAVIVMHKMMGLVMVG-HEDGCVRVVQAAVQIGIAIEQEVRIHNFLEKTKNHQRKKTMHD 287

Query: 294  SQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLLTQSA 115
             QE   KE  +LRKRV SLI+R R++EVQ LV  +E K W RD QAKLG  LI+LLT++A
Sbjct: 288  VQESMDKEKEMLRKRVNSLIRRKRLMEVQNLVIQDETKPWNRDKQAKLGSRLIELLTETA 347

Query: 114  YVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKK 1
            YVQPPV+QS   PPDVRPAFRHIFK  T+  GQ  VKK
Sbjct: 348  YVQPPVDQSEGIPPDVRPAFRHIFKSVTKNPGQKTVKK 385


>ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score =  342 bits (876), Expect = 2e-91
 Identities = 182/318 (57%), Positives = 230/318 (72%)
 Frame = -2

Query: 954  PISDSSDDNFPENPEKLLNLQVMPNGFRSSLTKESGDRVFIQDPPWISSLFMKSLLFRGR 775
            P++DS  +NF E  +  +NLQ+  +        ES  R+FIQDPPWI+SLF+K L    +
Sbjct: 66   PLADSVHENFTETLDNSMNLQIPISEIHQITRGESSKRIFIQDPPWIASLFLKGLYKCVQ 125

Query: 774  NRSGVKIEFKEMERRKYYLLRRRQIKAETEAWXXXXXXXXXXXXXXXXRKLAPNLPHVKK 595
                VK+EF E+E+RKY LLRRRQIKAETEAW                +KLAPNLP+VKK
Sbjct: 126  KE--VKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKLAPNLPYVKK 183

Query: 594  LMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDALPADKMAVIVMHKIMGLLMMGGKED 415
            L LGWFEPL+ AIE+EQ  QRSKK KAAFAP+++ L ADKMA IVM+K+MGLLMM   +D
Sbjct: 184  LFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIELLSADKMAGIVMYKMMGLLMMAA-QD 242

Query: 414  RCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRMEVGAESQEDSIKEAAILRKRVKSLI 235
             CV+VV+AAVQIG AIE EVRI S LE+ + +QR +V A++ E   KE  +LRK+V  LI
Sbjct: 243  GCVQVVQAAVQIGGAIEQEVRIQSILEKARSNQRTKVRADT-ECLTKEKEVLRKQVNGLI 301

Query: 234  KRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLLTQSAYVQPPVNQSADSPPDVRPAF 55
            +R ++ EVQKL++ EEFK+WGRDTQAKLG  LI+LL +SA++QPPV+QSADSPPD+RPAF
Sbjct: 302  RRRKLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDIRPAF 361

Query: 54   RHIFKIATRESGQSLVKK 1
             H FK   +  GQ+ VKK
Sbjct: 362  WHGFKPVAKTPGQNFVKK 379


>ref|XP_006453567.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
            gi|557556793|gb|ESR66807.1| hypothetical protein
            CICLE_v10007333mg [Citrus clementina]
          Length = 986

 Score =  328 bits (842), Expect = 2e-87
 Identities = 178/353 (50%), Positives = 232/353 (65%), Gaps = 28/353 (7%)
 Frame = -2

Query: 975  PAHLLPPPISDSSDDNFPENPEKLLNLQ-----------------------VMPNGFRSS 865
            P  L P P+ DS   NF EN E  ++                         V+P    S+
Sbjct: 70   PTRLRPRPLQDSIQSNFMENIENSVDFHIPTCEQEQNFHQRVENIETCADPVIPRSENST 129

Query: 864  ----LTKESGDRVFIQDPPWISSLFMKSLLFRGRNRSGVKI-EFKEMERRKYYLLRRRQI 700
                +  E   R+F+QDPPW SS+F+K L  R      +K+ E++EM++RK+ LLRRRQ+
Sbjct: 130  NHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKR------IKLQEYREMKKRKFNLLRRRQV 183

Query: 699  KAETEAWXXXXXXXXXXXXXXXXRKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKN 520
            K ETEAW                ++LAPNLPH+K L LGWF PL EAIE+EQ +QR+KK 
Sbjct: 184  KQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQ 243

Query: 519  KAAFAPYVDALPADKMAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSF 340
            KAA+AP+++ LPADKMAVIVMHK+MGL+M  G EDRCV+VV+AAV IG+AIE E+RIHSF
Sbjct: 244  KAAYAPHIELLPADKMAVIVMHKMMGLVM-AGHEDRCVQVVQAAVHIGMAIEQEIRIHSF 302

Query: 339  LERTKKHQRMEVGAESQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQ 160
            LE+TK ++R ++ A+++E   KE  +LRKRV SLIK  RV+E QKL+++EE K WGRDTQ
Sbjct: 303  LEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQ 362

Query: 159  AKLGCCLIQLLTQSAYVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKK 1
            AKLG  L++LL ++AYVQ PVN +  SPPDVRPAFRH FK   +  GQ   K+
Sbjct: 363  AKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415


>ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
            gi|557556792|gb|ESR66806.1| hypothetical protein
            CICLE_v10007333mg [Citrus clementina]
          Length = 1012

 Score =  328 bits (842), Expect = 2e-87
 Identities = 178/353 (50%), Positives = 232/353 (65%), Gaps = 28/353 (7%)
 Frame = -2

Query: 975  PAHLLPPPISDSSDDNFPENPEKLLNLQ-----------------------VMPNGFRSS 865
            P  L P P+ DS   NF EN E  ++                         V+P    S+
Sbjct: 70   PTRLRPRPLQDSIQSNFMENIENSVDFHIPTCEQEQNFHQRVENIETCADPVIPRSENST 129

Query: 864  ----LTKESGDRVFIQDPPWISSLFMKSLLFRGRNRSGVKI-EFKEMERRKYYLLRRRQI 700
                +  E   R+F+QDPPW SS+F+K L  R      +K+ E++EM++RK+ LLRRRQ+
Sbjct: 130  NHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKR------IKLQEYREMKKRKFNLLRRRQV 183

Query: 699  KAETEAWXXXXXXXXXXXXXXXXRKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKN 520
            K ETEAW                ++LAPNLPH+K L LGWF PL EAIE+EQ +QR+KK 
Sbjct: 184  KQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQ 243

Query: 519  KAAFAPYVDALPADKMAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSF 340
            KAA+AP+++ LPADKMAVIVMHK+MGL+M  G EDRCV+VV+AAV IG+AIE E+RIHSF
Sbjct: 244  KAAYAPHIELLPADKMAVIVMHKMMGLVM-AGHEDRCVQVVQAAVHIGMAIEQEIRIHSF 302

Query: 339  LERTKKHQRMEVGAESQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQ 160
            LE+TK ++R ++ A+++E   KE  +LRKRV SLIK  RV+E QKL+++EE K WGRDTQ
Sbjct: 303  LEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQ 362

Query: 159  AKLGCCLIQLLTQSAYVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKK 1
            AKLG  L++LL ++AYVQ PVN +  SPPDVRPAFRH FK   +  GQ   K+
Sbjct: 363  AKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415


>emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]
          Length = 989

 Score =  328 bits (840), Expect = 3e-87
 Identities = 195/403 (48%), Positives = 252/403 (62%), Gaps = 16/403 (3%)
 Frame = -2

Query: 1161 ASTTPFSPSPRAQFHQPTNSSPWKPNKN---------FISMSTPEIXXXXXXXXXXXXXX 1009
            +ST  FSP P+ Q  +     P K +K          FI +S+ ++              
Sbjct: 2    SSTASFSPIPQVQIQKQWRK-PLKSHKKASKTTHFSLFIPLSSKQLRIEHPLFPSSSSSS 60

Query: 1008 XQ---TLKLPSLY----NPAHLLPPPISDSSDDNFPENPEKLLNLQVMPNGFRSSLTKES 850
                 TL LPSL       +   P P S    D+    PE+ L  + M   FR+S   + 
Sbjct: 61   NSFPSTLSLPSLTPKLGKTSFFQPSPQSQIILDS----PEEEL-AEKMDGHFRNSDKIKG 115

Query: 849  GDRVFIQDPPWISSLFMKSLLFRGRNRSGVKIEFKEMERRKYYLLRRRQIKAETEAWXXX 670
              R+F+QDPPW+++LFMK L+    + +G+++EFKE+ER KY LLRRRQIKAETEAW   
Sbjct: 116  SSRIFMQDPPWVNTLFMKGLV---DSNTGLRLEFKEIEREKYNLLRRRQIKAETEAWESM 172

Query: 669  XXXXXXXXXXXXXRKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDA 490
                         +KLAPNLP VK L LGWFEPL++AIEKEQ  QRS+K KA +  ++D 
Sbjct: 173  VEEYREFVREMRDKKLAPNLPQVKALFLGWFEPLKKAIEKEQKSQRSRKQKAIYGYHIDM 232

Query: 489  LPADKMAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRM 310
            LPADKMAVIVMHK+M LLM+G  +  CVR+V+AA+QIG AIE E++IHSFLE+TK  ++ 
Sbjct: 233  LPADKMAVIVMHKMMSLLMVGN-DAGCVRLVQAALQIGTAIEQEIKIHSFLEKTKNIRKN 291

Query: 309  EVGAESQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQL 130
               ++  ED +KE  I R RVKSLIKR R+ E  KLV SE+ KSW +DTQAKLG  LI+L
Sbjct: 292  --ASDLPEDLLKEKEIQRNRVKSLIKRKRLFEAAKLVTSEDSKSWSQDTQAKLGSRLIEL 349

Query: 129  LTQSAYVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKK 1
            L  +AY+Q P +QSAD+PPDVRPAFRH FKI   E GQ +VK+
Sbjct: 350  LIDTAYIQHPTSQSADTPPDVRPAFRHKFKILNNELGQQVVKR 392


>ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Citrus
            sinensis]
          Length = 1009

 Score =  325 bits (832), Expect = 3e-86
 Identities = 178/354 (50%), Positives = 233/354 (65%), Gaps = 28/354 (7%)
 Frame = -2

Query: 978  NPAHLLPPPISDSSDDNFPENPEKLLNLQ-----------------------VMPNGFRS 868
            NP  L P  + DS   NF EN E  ++                         V+P    S
Sbjct: 68   NPTRLRP--LQDSIQSNFMENIENSVDFHIPTCEQEQIFHQRVENTETCADLVIPRSENS 125

Query: 867  S----LTKESGDRVFIQDPPWISSLFMKSLLFRGRNRSGVKI-EFKEMERRKYYLLRRRQ 703
            +    +  E   R+F+QDPPW SS+F+K L  R      +K+ E++EM++RK+ LLRRRQ
Sbjct: 126  TNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKR------IKLQEYREMKKRKFNLLRRRQ 179

Query: 702  IKAETEAWXXXXXXXXXXXXXXXXRKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKK 523
            +K ETEAW                ++LAPNLPH+K L LGWF PLREAIE+EQ +QR+KK
Sbjct: 180  VKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLREAIEREQKMQRTKK 239

Query: 522  NKAAFAPYVDALPADKMAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHS 343
             KAA+AP+++ LPADK+AVIVMHK+MGL+M  G EDRCV+VV+AAV IG+AIE E+RIHS
Sbjct: 240  QKAAYAPHIELLPADKVAVIVMHKMMGLVM-AGHEDRCVQVVQAAVHIGMAIEQEIRIHS 298

Query: 342  FLERTKKHQRMEVGAESQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDT 163
            FLE+TK ++R ++ A+++E   KE  +LRKRV SLIK  RV+E QKL+++EE K WGRDT
Sbjct: 299  FLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDT 358

Query: 162  QAKLGCCLIQLLTQSAYVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKK 1
            QAKLG  L++LL ++AYVQ PVN +  SPPDVRPAFRH FK   +  GQ   K+
Sbjct: 359  QAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 412


>gb|EXB42920.1| DNA-directed RNA polymerase 3 [Morus notabilis]
          Length = 604

 Score =  301 bits (772), Expect = 3e-79
 Identities = 163/329 (49%), Positives = 219/329 (66%), Gaps = 1/329 (0%)
 Frame = -2

Query: 987  SLYNPAHLLPPPISDSSDDNFPENPEKLLNLQVMPNGFRSSLTKESGDRVFIQDPP-WIS 811
            +L  P    PPP+ D+  DN  E    L NL         + T  S  R+F QDPP WI+
Sbjct: 61   TLKPPPSPAPPPVLDTFRDNVAE----LENLDTAMTFHIENSTNTSNPRIFFQDPPPWIA 116

Query: 810  SLFMKSLLFRGRNRSGVKIEFKEMERRKYYLLRRRQIKAETEAWXXXXXXXXXXXXXXXX 631
            SLF+K +   G     V++E +E+ERR+Y LLRRRQI+AETEAW                
Sbjct: 117  SLFLKGIFNGGE---AVRVESREIERRRYNLLRRRQIRAETEAWERTAEEYREIEREMRE 173

Query: 630  RKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDALPADKMAVIVMHK 451
            RKLAPNLPHVK L LGWFEPLR+AIE+EQ ++  K+ K AFAP +D+LPADKMA+IVMHK
Sbjct: 174  RKLAPNLPHVKALFLGWFEPLRDAIEREQKIEGGKR-KTAFAPNIDSLPADKMALIVMHK 232

Query: 450  IMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRMEVGAESQEDSIKE 271
            +M ++M+   +D CV +V+AAV+I +A+EHEVRI  FLE+TKK +RM++ A+++E   KE
Sbjct: 233  MMEMVMVAN-QDGCVLLVQAAVRIAMAVEHEVRISCFLEKTKKSKRMKIVADNEEALSKE 291

Query: 270  AAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLLTQSAYVQPPVNQ 91
              +LRK +  LI++ ++ + Q+L+   EFK W R TQAKLG  LI+LLT++AYVQPP++ 
Sbjct: 292  KEVLRKNINGLIRKRKLSKAQRLLVKGEFKPWSRVTQAKLGSRLIELLTETAYVQPPLDH 351

Query: 90   SADSPPDVRPAFRHIFKIATRESGQSLVK 4
              D  PD+RPAFRH FK   + + Q  VK
Sbjct: 352  PVDDAPDIRPAFRHRFKSIAKTTVQRFVK 380