BLASTX nr result
ID: Rehmannia23_contig00018878
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia23_contig00018878
(340 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006363386.1| PREDICTED: THO complex subunit 4-like [Solan... 79 8e-13
emb|CAG26903.1| ALY protein [Nicotiana benthamiana] 75 1e-11
ref|XP_003538006.1| PREDICTED: THO complex subunit 4-like isofor... 74 2e-11
emb|CAG26902.1| ALY protein [Nicotiana benthamiana] 74 2e-11
ref|XP_004251323.1| PREDICTED: THO complex subunit 4-like [Solan... 71 2e-10
ref|XP_006488282.1| PREDICTED: THO complex subunit 4-like isofor... 70 4e-10
ref|XP_006424776.1| hypothetical protein CICLE_v10029160mg [Citr... 70 4e-10
emb|CAJ44457.1| ALY protein [Nicotiana benthamiana] 70 4e-10
ref|XP_006592204.1| PREDICTED: THO complex subunit 4-like isofor... 69 6e-10
ref|XP_003543506.1| PREDICTED: aly/REF export factor 2-like isof... 68 1e-09
gb|ESW22298.1| hypothetical protein PHAVU_005G142200g [Phaseolus... 67 2e-09
ref|XP_002531375.1| RNA and export factor binding protein, putat... 66 4e-09
gb|EOY34109.1| RNA-binding family protein [Theobroma cacao] 65 9e-09
ref|XP_002284215.1| PREDICTED: RNA and export factor-binding pro... 65 1e-08
emb|CAN83715.1| hypothetical protein VITISV_023787 [Vitis vinifera] 65 1e-08
ref|XP_006349515.1| PREDICTED: THO complex subunit 4-like [Solan... 64 2e-08
gb|EOY07572.1| RNA-binding family protein [Theobroma cacao] 64 2e-08
ref|XP_004249625.1| PREDICTED: RNA and export factor-binding pro... 64 2e-08
ref|XP_004249624.1| PREDICTED: RNA and export factor-binding pro... 64 2e-08
ref|XP_006373955.1| hypothetical protein POPTR_0016s11470g [Popu... 64 3e-08
>ref|XP_006363386.1| PREDICTED: THO complex subunit 4-like [Solanum tuberosum]
Length = 254
Score = 78.6 bits (192), Expect = 8e-13
Identities = 49/91 (53%), Positives = 60/91 (65%), Gaps = 10/91 (10%)
Frame = -2
Query: 246 LDMTLDDIITRSKTSRAG-PR--------PSATGPARRFHDRSASRAAPYSFSTARTPES 94
LDMTLDD+I ++KT G PR S+ GP+RRF +RSA+RAAPY STA+ PE+
Sbjct: 6 LDMTLDDLIKKNKTGTGGKPRGRGCGAASTSSAGPSRRFPNRSANRAAPY--STAKAPEA 63
Query: 93 LLDHGMFAAGRAFP-NLGGARISSIETGTKL 4
+H MFAA +A G R SSIETGTKL
Sbjct: 64 SWNHDMFAADQAVAFGQAGGRASSIETGTKL 94
>emb|CAG26903.1| ALY protein [Nicotiana benthamiana]
Length = 252
Score = 74.7 bits (182), Expect = 1e-11
Identities = 49/92 (53%), Positives = 60/92 (65%), Gaps = 11/92 (11%)
Frame = -2
Query: 246 LDMTLDDIITRSKTSRAGPR-------PSATGPARRFHDRSASRAAPYSFSTARTPESLL 88
LDM+LDD+I ++KT G R S GPARRF +RSA+RAAPY STA+ PE+
Sbjct: 6 LDMSLDDLIKKNKTDTGGKRRGRGRGGASGPGPARRFPNRSANRAAPY--STAKAPEAAW 63
Query: 87 DHGMFAAG-RAFP--NLGGAR-ISSIETGTKL 4
+H MFAA +AFP GG + SSI TGTKL
Sbjct: 64 NHDMFAAADQAFPFGQAGGDQAASSISTGTKL 95
>ref|XP_003538006.1| PREDICTED: THO complex subunit 4-like isoform X1 [Glycine max]
gi|571488643|ref|XP_006590992.1| PREDICTED: THO complex
subunit 4-like isoform X2 [Glycine max]
Length = 247
Score = 73.9 bits (180), Expect = 2e-11
Identities = 44/90 (48%), Positives = 60/90 (66%), Gaps = 9/90 (10%)
Frame = -2
Query: 246 LDMTLDDIITRSKTSRAGP-----RPSATGPARRFHDRSASRAAPYSFSTARTPESLLDH 82
+DM+LDDII +K S +G RPS +GP+RRF +R+A+RAAPY +TA+ PE+ H
Sbjct: 5 MDMSLDDIIKNNKKSGSGSSRGRIRPSGSGPSRRFPNRAANRAAPY--ATAKAPEATWQH 62
Query: 81 GMFA----AGRAFPNLGGARISSIETGTKL 4
++A A +P GG R +SIETGTKL
Sbjct: 63 DLYADQQVAAAGYPAQGG-RAASIETGTKL 91
>emb|CAG26902.1| ALY protein [Nicotiana benthamiana]
Length = 249
Score = 73.9 bits (180), Expect = 2e-11
Identities = 47/99 (47%), Positives = 59/99 (59%), Gaps = 14/99 (14%)
Frame = -2
Query: 255 MSNLDMTLDDIITRSKTSRA-GPRPSATG-----------PARRFHDRSASRAAPYSFST 112
MSNLD++LDD+I R+K+S + PRP +G P RRF R+A+R+APYS
Sbjct: 1 MSNLDVSLDDLIKRNKSSSSRNPRPRTSGSGSGTGSGGPSPRRRFPSRAANRSAPYSSGP 60
Query: 111 ARTPESLLDHGMFAA-GRAFPNLGGA-RISSIETGTKLL 1
P+S DH MFA A+P GA IS IETG KLL
Sbjct: 61 VHAPDSTWDHNMFAEHAPAYPAARGAGGISGIETGIKLL 99
>ref|XP_004251323.1| PREDICTED: THO complex subunit 4-like [Solanum lycopersicum]
Length = 251
Score = 70.9 bits (172), Expect = 2e-10
Identities = 45/91 (49%), Positives = 57/91 (62%), Gaps = 10/91 (10%)
Frame = -2
Query: 246 LDMTLDDIITRSKTSRAG-PR--------PSATGPARRFHDRSASRAAPYSFSTARTPES 94
LDMTLDD+I ++KT G PR S+ GP+RR +RSA+RAAPYS A+ P++
Sbjct: 6 LDMTLDDLIKKNKTGTGGKPRGRGRGAASTSSAGPSRRVPNRSANRAAPYSI--AKAPQA 63
Query: 93 LLDHGMFAAGRAFP-NLGGARISSIETGTKL 4
+H MF A +A G R SSIETGTKL
Sbjct: 64 SWNHDMFEADQAVAFGQAGGRASSIETGTKL 94
>ref|XP_006488282.1| PREDICTED: THO complex subunit 4-like isoform X1 [Citrus sinensis]
Length = 247
Score = 69.7 bits (169), Expect = 4e-10
Identities = 45/89 (50%), Positives = 54/89 (60%), Gaps = 6/89 (6%)
Frame = -2
Query: 252 SNLDMTLDDIITRSKTSRAGP-----RPSATGPARRFHDRSASRAAPYSFSTARTPESLL 88
S LDM+LDDII +K S +G R S GPARR +R A+R APY +TA+ PE+
Sbjct: 3 SALDMSLDDIIKNNKKSGSGNFRGRGRGSGPGPARRIPNRGANRVAPY--TTAKAPETTW 60
Query: 87 DHGMFA-AGRAFPNLGGARISSIETGTKL 4
H MFA AFP R S+IETGTKL
Sbjct: 61 QHDMFADQVSAFPVQQAGRASAIETGTKL 89
>ref|XP_006424776.1| hypothetical protein CICLE_v10029160mg [Citrus clementina]
gi|567864256|ref|XP_006424777.1| hypothetical protein
CICLE_v10029160mg [Citrus clementina]
gi|567864258|ref|XP_006424778.1| hypothetical protein
CICLE_v10029160mg [Citrus clementina]
gi|567864260|ref|XP_006424779.1| hypothetical protein
CICLE_v10029160mg [Citrus clementina]
gi|557526710|gb|ESR38016.1| hypothetical protein
CICLE_v10029160mg [Citrus clementina]
gi|557526711|gb|ESR38017.1| hypothetical protein
CICLE_v10029160mg [Citrus clementina]
gi|557526712|gb|ESR38018.1| hypothetical protein
CICLE_v10029160mg [Citrus clementina]
gi|557526713|gb|ESR38019.1| hypothetical protein
CICLE_v10029160mg [Citrus clementina]
Length = 247
Score = 69.7 bits (169), Expect = 4e-10
Identities = 45/89 (50%), Positives = 54/89 (60%), Gaps = 6/89 (6%)
Frame = -2
Query: 252 SNLDMTLDDIITRSKTSRAGP-----RPSATGPARRFHDRSASRAAPYSFSTARTPESLL 88
S LDM+LDDII +K S +G R S GPARR +R A+R APY +TA+ PE+
Sbjct: 3 SALDMSLDDIIKNNKKSGSGNFRGRGRGSGPGPARRIPNRGANRVAPY--TTAKAPETTW 60
Query: 87 DHGMFA-AGRAFPNLGGARISSIETGTKL 4
H MFA AFP R S+IETGTKL
Sbjct: 61 QHDMFADQVSAFPVQQAGRASAIETGTKL 89
>emb|CAJ44457.1| ALY protein [Nicotiana benthamiana]
Length = 246
Score = 69.7 bits (169), Expect = 4e-10
Identities = 46/96 (47%), Positives = 57/96 (59%), Gaps = 11/96 (11%)
Frame = -2
Query: 255 MSNLDMTLDDIITRSKTSRA-GPRPSATGPA--------RRFHDRSASRAAPYSFSTART 103
MSNLD++LDD+I R+K+S + PRP +G RR +R+A R+APYS
Sbjct: 1 MSNLDVSLDDLIKRNKSSSSRNPRPRTSGSGSGSGGPGPRRRPNRAAKRSAPYSSGPVHA 60
Query: 102 PESLLDHGMFAA-GRAFPNLGGA-RISSIETGTKLL 1
PES DH MFA A+P GA IS IETG KLL
Sbjct: 61 PESTWDHDMFAEHAPAYPAARGAGGISGIETGIKLL 96
>ref|XP_006592204.1| PREDICTED: THO complex subunit 4-like isoform X1 [Glycine max]
gi|571492362|ref|XP_006592205.1| PREDICTED: THO complex
subunit 4-like isoform X2 [Glycine max]
Length = 247
Score = 68.9 bits (167), Expect = 6e-10
Identities = 42/90 (46%), Positives = 57/90 (63%), Gaps = 9/90 (10%)
Frame = -2
Query: 246 LDMTLDDIITRSKTSRAGP-----RPSATGPARRFHDRSASRAAPYSFSTARTPESLLDH 82
+DM+LDDII +K S +G RPS +GP RR +R+A+RAAPY + A+ PE+ H
Sbjct: 5 MDMSLDDIIKNNKKSGSGSSRGRTRPSGSGPTRRLPNRAANRAAPY--APAKAPEATWQH 62
Query: 81 GMFA----AGRAFPNLGGARISSIETGTKL 4
++A A +P GG R +SIETGTKL
Sbjct: 63 DLYADQHVAAAGYPAQGG-RAASIETGTKL 91
>ref|XP_003543506.1| PREDICTED: aly/REF export factor 2-like isoform X1 [Glycine max]
Length = 243
Score = 67.8 bits (164), Expect = 1e-09
Identities = 42/86 (48%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Frame = -2
Query: 246 LDMTLDDIITRSKTS-----RAGPRPSATGPARRFHDRSASRAAPYSFSTARTPESLLDH 82
LDMTL+DII +K S R R S GPARR +R+A+RAAPY + A+ PE+ H
Sbjct: 5 LDMTLEDIIKNNKKSSLANTRGRGRASGPGPARRLPNRAANRAAPY--AAAKAPETAWKH 62
Query: 81 GMFAAGRAFPNLGGARISSIETGTKL 4
M+A G R SSIETGTKL
Sbjct: 63 DMYANQPVAAAYPGGRASSIETGTKL 88
>gb|ESW22298.1| hypothetical protein PHAVU_005G142200g [Phaseolus vulgaris]
gi|561023569|gb|ESW22299.1| hypothetical protein
PHAVU_005G142200g [Phaseolus vulgaris]
Length = 245
Score = 67.4 bits (163), Expect = 2e-09
Identities = 45/89 (50%), Positives = 52/89 (58%), Gaps = 8/89 (8%)
Frame = -2
Query: 246 LDMTLDDIITRSKTS-----RAGPRPSATGPARRFHDRSASRAAPYSFSTARTPESLLDH 82
LDMTLDDII +K S R R S GPARR +R+ +R APY + A+ PES H
Sbjct: 5 LDMTLDDIIKNNKKSASANTRGRGRASGPGPARRLPNRAGNRPAPY--AAAKAPESAWQH 62
Query: 81 GMFA---AGRAFPNLGGARISSIETGTKL 4
M+A AF GG R SSIETGTKL
Sbjct: 63 DMYADQGVATAFAGQGG-RASSIETGTKL 90
>ref|XP_002531375.1| RNA and export factor binding protein, putative [Ricinus communis]
gi|223529035|gb|EEF31023.1| RNA and export factor
binding protein, putative [Ricinus communis]
Length = 247
Score = 66.2 bits (160), Expect = 4e-09
Identities = 43/93 (46%), Positives = 51/93 (54%), Gaps = 10/93 (10%)
Frame = -2
Query: 252 SNLDMTLDDIITRSK-----TSRAGPRPSATGPARRFHDRSASRAAPYSFSTARTPESLL 88
S LDM+LDDII +K SR R S GP RRF++R +RAAPY + A+ PES
Sbjct: 3 SALDMSLDDIIKSNKKPGSGNSRGRGRSSGPGPTRRFNNRGTNRAAPY--AAAKAPESTW 60
Query: 87 DHGMFAAGRAFPNL-----GGARISSIETGTKL 4
H MF GG+R S IETGTKL
Sbjct: 61 QHDMFTDQGGMGMFQGQGGGGSRASGIETGTKL 93
>gb|EOY34109.1| RNA-binding family protein [Theobroma cacao]
Length = 241
Score = 65.1 bits (157), Expect = 9e-09
Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 6/89 (6%)
Frame = -2
Query: 252 SNLDMTLDDIITRSKTSRAGP-----RPSATGPARRFHDRSASRAAPYSFSTARTPESLL 88
S L+M+LDD+I R++ S +G R S GPARRF +R A+R+ PY + A+ PE+
Sbjct: 3 SALEMSLDDLIKRNRKSGSGNSRGRGRGSGPGPARRFPNRGANRSGPY--TAAKAPETTW 60
Query: 87 DHGMFA-AGRAFPNLGGARISSIETGTKL 4
H M++ G AF G R S+IETGTKL
Sbjct: 61 QHDMYSDKGAAFQGQAG-RASAIETGTKL 88
>ref|XP_002284215.1| PREDICTED: RNA and export factor-binding protein 2 [Vitis vinifera]
gi|297746115|emb|CBI16171.3| unnamed protein product
[Vitis vinifera]
Length = 243
Score = 64.7 bits (156), Expect = 1e-08
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 8/92 (8%)
Frame = -2
Query: 255 MSN-LDMTLDDIITRSKTSRAGP------RPSATGPARRFHDRSASRAAPYSFSTARTPE 97
MSN LDM+LDD+I +K S G R S GPARR +R A+R PYS S A PE
Sbjct: 1 MSNALDMSLDDLIKNNKRSGGGGNARGRGRGSGPGPARRLPNRGANRITPYSVSKA--PE 58
Query: 96 SLLDHGMFA-AGRAFPNLGGARISSIETGTKL 4
+ H MFA A+P G R S+IETGTKL
Sbjct: 59 TTWQHDMFADQAAAYPAQAG-RTSAIETGTKL 89
>emb|CAN83715.1| hypothetical protein VITISV_023787 [Vitis vinifera]
Length = 281
Score = 64.7 bits (156), Expect = 1e-08
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 8/92 (8%)
Frame = -2
Query: 255 MSN-LDMTLDDIITRSKTSRAGP------RPSATGPARRFHDRSASRAAPYSFSTARTPE 97
MSN LDM+LDD+I +K S G R S GPARR +R A+R PYS S A PE
Sbjct: 1 MSNALDMSLDDLIKNNKRSGGGGNARGRGRGSGPGPARRLPNRGANRITPYSVSKA--PE 58
Query: 96 SLLDHGMFA-AGRAFPNLGGARISSIETGTKL 4
+ H MFA A+P G R S+IETGTKL
Sbjct: 59 TTWQHDMFADQAAAYPAQAG-RTSAIETGTKL 89
>ref|XP_006349515.1| PREDICTED: THO complex subunit 4-like [Solanum tuberosum]
Length = 247
Score = 64.3 bits (155), Expect = 2e-08
Identities = 44/100 (44%), Positives = 56/100 (56%), Gaps = 15/100 (15%)
Frame = -2
Query: 255 MSNLDMTLDDIITRSKTSRA-GPRP--------------SATGPARRFHDRSASRAAPYS 121
MSNLD++LDD+I R+K+S + PRP S GP RRF +R+++R APYS
Sbjct: 1 MSNLDVSLDDLIKRNKSSTSRNPRPRTAGSGSGSGPGFDSGPGPRRRFPNRASNRPAPYS 60
Query: 120 FSTARTPESLLDHGMFAAGRAFPNLGGARISSIETGTKLL 1
PES DH MFA A + G +S IET KLL
Sbjct: 61 ---VHAPESTWDHDMFAE-HAPSSARGPGVSGIETRIKLL 96
>gb|EOY07572.1| RNA-binding family protein [Theobroma cacao]
Length = 240
Score = 64.3 bits (155), Expect = 2e-08
Identities = 40/86 (46%), Positives = 52/86 (60%), Gaps = 5/86 (5%)
Frame = -2
Query: 246 LDMTLDDIITRSK----TSRAGPRPSATGPARRFHDRSASRAAPYSFSTARTPESLLDHG 79
LDM+LDD+I ++ T P S GP+RRF +R+A+R APYS + P++ H
Sbjct: 5 LDMSLDDLIKSNRKSGLTRTRPPLNSGNGPSRRFPNRAANRTAPYS-KPVQAPDTTWQHD 63
Query: 78 MFA-AGRAFPNLGGARISSIETGTKL 4
MF G FP+ G R SSIETGTKL
Sbjct: 64 MFVDDGAGFPSAAG-RASSIETGTKL 88
>ref|XP_004249625.1| PREDICTED: RNA and export factor-binding protein 2-like isoform 2
[Solanum lycopersicum]
Length = 239
Score = 63.9 bits (154), Expect = 2e-08
Identities = 42/92 (45%), Positives = 54/92 (58%), Gaps = 7/92 (7%)
Frame = -2
Query: 255 MSNLDMTLDDIITRSKTSRA-GPRPSAT------GPARRFHDRSASRAAPYSFSTARTPE 97
MSNLD++LDD+I R+K+S + PRP T GP RRF +R+ +R APYS PE
Sbjct: 1 MSNLDVSLDDLIKRNKSSSSRNPRPRTTGFGSGPGPRRRFPNRATNRPAPYS---VHAPE 57
Query: 96 SLLDHGMFAAGRAFPNLGGARISSIETGTKLL 1
S DH MFA ++ +S I TG KLL
Sbjct: 58 STWDHDMFADHNP-SSVRRPGVSGIGTGIKLL 88
>ref|XP_004249624.1| PREDICTED: RNA and export factor-binding protein 2-like isoform 1
[Solanum lycopersicum]
Length = 241
Score = 63.9 bits (154), Expect = 2e-08
Identities = 42/92 (45%), Positives = 54/92 (58%), Gaps = 7/92 (7%)
Frame = -2
Query: 255 MSNLDMTLDDIITRSKTSRA-GPRPSAT------GPARRFHDRSASRAAPYSFSTARTPE 97
MSNLD++LDD+I R+K+S + PRP T GP RRF +R+ +R APYS PE
Sbjct: 1 MSNLDVSLDDLIKRNKSSSSRNPRPRTTGFGSGPGPRRRFPNRATNRPAPYS---VHAPE 57
Query: 96 SLLDHGMFAAGRAFPNLGGARISSIETGTKLL 1
S DH MFA ++ +S I TG KLL
Sbjct: 58 STWDHDMFADHNP-SSVRRPGVSGIGTGIKLL 88
>ref|XP_006373955.1| hypothetical protein POPTR_0016s11470g [Populus trichocarpa]
gi|550321275|gb|ERP51752.1| hypothetical protein
POPTR_0016s11470g [Populus trichocarpa]
Length = 244
Score = 63.5 bits (153), Expect = 3e-08
Identities = 39/85 (45%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Frame = -2
Query: 246 LDMTLDDIIT---RSKTSRAGPRPSA-TGPARRFHDRSASRAAPYSFSTARTPESLLDHG 79
LDM+LDDII +S SR PR S GP+RRF +R+ + PYS + PE+ H
Sbjct: 6 LDMSLDDIIENNRKSSNSRGRPRSSGGPGPSRRFSNRAGNITTPYSKPQVQAPETSWQHD 65
Query: 78 MFAAGRAFPNLGGARISSIETGTKL 4
MF + AR SSIETGTKL
Sbjct: 66 MFTDNPVSASAYPARASSIETGTKL 90