BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00017714
         (473 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mit...   196   2e-48
ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   196   3e-48
ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   195   6e-48
gb|EMJ01009.1| hypothetical protein PRUPE_ppa004969mg [Prunus pe...   187   2e-45
gb|EMJ01008.1| hypothetical protein PRUPE_ppa004969mg [Prunus pe...   187   2e-45
gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]           185   6e-45
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   183   2e-44
ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Popu...   179   3e-43
ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   178   7e-43
ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [A...   176   2e-42
ref|XP_006486999.1| PREDICTED: RNA pseudouridine synthase 4, mit...   174   8e-42
ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citr...   174   8e-42
ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   174   8e-42
gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theob...   174   1e-41
ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   173   2e-41
ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Caps...   164   1e-38
ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thalian...   162   6e-38
gb|ESW29223.1| hypothetical protein PHAVU_002G053600g [Phaseolus...   161   7e-38
ref|XP_004511295.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   161   9e-38
ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mit...   159   4e-37

>ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like
           [Solanum tuberosum]
          Length = 467

 Score =  196 bits (499), Expect = 2e-48
 Identities = 102/158 (64%), Positives = 128/158 (81%), Gaps = 1/158 (0%)
 Frame = +1

Query: 1   QIRKECSNSLSKEQRPRRIGAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFI 180
           Q+R++ SN   +EQRP+R+ AK+ M++GD+IFLP +V  K PS+ V     S+EEE KF+
Sbjct: 118 QVRRDSSNV--EEQRPKRVSAKESMNVGDRIFLPITVQ-KFPSEKVVYYP-SSEEERKFV 173

Query: 181 HSLELYKDAAMIVINKPPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLVHRLDRDSSG 360
           HSLELYKD  ++V+NKPPGMPVQGG+GIK SLDELAAKY+R++YSE+PRLVHRLDRD SG
Sbjct: 174 HSLELYKDPEIVVVNKPPGMPVQGGIGIKRSLDELAAKYMRHEYSEAPRLVHRLDRDCSG 233

Query: 361 ILVMGRTQLSTTILHSIFREKTFGASN-DVPGSDRILQ 471
           +LVMGRTQLS + LHSIFREKTF + N D+    RILQ
Sbjct: 234 LLVMGRTQLSASALHSIFREKTFDSQNEDLESKKRILQ 271


>ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Solanum
           lycopersicum]
          Length = 467

 Score =  196 bits (497), Expect = 3e-48
 Identities = 103/158 (65%), Positives = 127/158 (80%), Gaps = 1/158 (0%)
 Frame = +1

Query: 1   QIRKECSNSLSKEQRPRRIGAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFI 180
           Q+R++ SN   +EQRP+R+ AK+ M++GD+IFLP +V  K PS+ V     S+EEE KF+
Sbjct: 118 QVRRDSSNV--EEQRPKRVSAKESMNVGDRIFLPITVQ-KFPSEKVVYYP-SSEEERKFV 173

Query: 181 HSLELYKDAAMIVINKPPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLVHRLDRDSSG 360
           HSLELYKDA +IV+NKPPGMPVQGG+GIK SLDELAAKY+ + YSE+PRLVHRLDRD SG
Sbjct: 174 HSLELYKDAEIIVVNKPPGMPVQGGIGIKRSLDELAAKYMSHQYSEAPRLVHRLDRDCSG 233

Query: 361 ILVMGRTQLSTTILHSIFREKTFGASN-DVPGSDRILQ 471
           +LVMGRTQLS + LHSIFREKTF + N D+    RILQ
Sbjct: 234 LLVMGRTQLSASALHSIFREKTFDSQNEDLESKKRILQ 271


>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis
           vinifera] gi|296090438|emb|CBI40257.3| unnamed protein
           product [Vitis vinifera]
          Length = 476

 Score =  195 bits (495), Expect = 6e-48
 Identities = 103/165 (62%), Positives = 130/165 (78%), Gaps = 8/165 (4%)
 Frame = +1

Query: 1   QIRKECSNSLS-------KEQRPRRIGAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSN 159
           Q+R+E  N ++       +E R +R+ AKDLM++GD+I LP +V+ + PS+  +++   N
Sbjct: 119 QVRRESYNMITSDIGVQNQEHRLKRVAAKDLMNLGDQILLPITVE-EFPSE--KHEYHCN 175

Query: 160 EEEMKFIHSLELYKDAAMIVINKPPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLVHR 339
           +EE+ F+H+LELYKD A+IV+NKPPG+PVQGG+GIK SLDELAA YLRYD SE PRLVHR
Sbjct: 176 DEEINFVHNLELYKDPAIIVVNKPPGLPVQGGIGIKRSLDELAATYLRYDCSEPPRLVHR 235

Query: 340 LDRDSSGILVMGRTQLSTTILHSIFREKTFGAS-NDVPGSDRILQ 471
           LDRDSSGIL+MGRTQ S TILHSIFREKTFGAS ND+    RILQ
Sbjct: 236 LDRDSSGILIMGRTQTSATILHSIFREKTFGASNNDIDTKKRILQ 280


>gb|EMJ01009.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
          Length = 483

 Score =  187 bits (474), Expect = 2e-45
 Identities = 105/169 (62%), Positives = 125/169 (73%), Gaps = 12/169 (7%)
 Frame = +1

Query: 1   QIRKE-CSNSLSKE-----QRP-RRIGAKDLMDIGDKIFLPKSV----DGKSPSKTVENQ 147
           Q+R+E C    S E     +RP +R+ AKD M++GD+I LP SV    + K      + +
Sbjct: 119 QVRRESCDMECSGEGVEALERPLKRVAAKDSMNVGDRIHLPLSVQEFPNDKQELPNDKKE 178

Query: 148 SFSNEEEMKFIHSLELYKDAAMIVINKPPGMPVQGGLGIKSSLDELAAKYLRYDYSESPR 327
            + +EEE+ FI SLELYKD A+IVINKPPGMPVQGG+GIK SLDELAA  L YD+SE PR
Sbjct: 179 CYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQGGIGIKRSLDELAAACLSYDFSEPPR 238

Query: 328 LVHRLDRDSSGILVMGRTQLSTTILHSIFREKTFGASND-VPGSDRILQ 471
           LVHRLDRDSSGILVMGRTQ S T+LHSIFREKTFGASND +  + RILQ
Sbjct: 239 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFGASNDEIDDAKRILQ 287


>gb|EMJ01008.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
          Length = 481

 Score =  187 bits (474), Expect = 2e-45
 Identities = 105/169 (62%), Positives = 125/169 (73%), Gaps = 12/169 (7%)
 Frame = +1

Query: 1   QIRKE-CSNSLSKE-----QRP-RRIGAKDLMDIGDKIFLPKSV----DGKSPSKTVENQ 147
           Q+R+E C    S E     +RP +R+ AKD M++GD+I LP SV    + K      + +
Sbjct: 119 QVRRESCDMECSGEGVEALERPLKRVAAKDSMNVGDRIHLPLSVQEFPNDKQELPNDKKE 178

Query: 148 SFSNEEEMKFIHSLELYKDAAMIVINKPPGMPVQGGLGIKSSLDELAAKYLRYDYSESPR 327
            + +EEE+ FI SLELYKD A+IVINKPPGMPVQGG+GIK SLDELAA  L YD+SE PR
Sbjct: 179 CYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQGGIGIKRSLDELAAACLSYDFSEPPR 238

Query: 328 LVHRLDRDSSGILVMGRTQLSTTILHSIFREKTFGASND-VPGSDRILQ 471
           LVHRLDRDSSGILVMGRTQ S T+LHSIFREKTFGASND +  + RILQ
Sbjct: 239 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFGASNDEIDDAKRILQ 287


>gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]
          Length = 470

 Score =  185 bits (469), Expect = 6e-45
 Identities = 93/134 (69%), Positives = 108/134 (80%)
 Frame = +1

Query: 43  RPRRIGAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFIHSLELYKDAAMIVI 222
           R RR+ AKD +++GDKIFLP SV      K    + F NEEE+KFI SLELYKD A++V+
Sbjct: 134 RLRRVSAKDSLNLGDKIFLPISVKELPVEK---KECFCNEEEVKFIRSLELYKDPAIVVV 190

Query: 223 NKPPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLVHRLDRDSSGILVMGRTQLSTTIL 402
           NKPPG+PVQGG+GIK+SLD+LA   L YDY+E PRLVHRLDRD SGILVMGRTQ S T+L
Sbjct: 191 NKPPGLPVQGGIGIKTSLDQLAVTCLSYDYTEPPRLVHRLDRDCSGILVMGRTQTSATVL 250

Query: 403 HSIFREKTFGASND 444
           HSIFREKTFGASND
Sbjct: 251 HSIFREKTFGASND 264


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 536

 Score =  183 bits (464), Expect = 2e-44
 Identities = 99/160 (61%), Positives = 116/160 (72%), Gaps = 3/160 (1%)
 Frame = +1

Query: 1   QIRKECSN--SLSKEQRPRRIGAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMK 174
           Q+++E  N      E + +R+ AKDLM++GD+IFLP SV      K    +    E+E  
Sbjct: 185 QVKRELLNVGDGEMEHKTKRVAAKDLMNVGDRIFLPISVQALPFEK---QKCHCGEKEAN 241

Query: 175 FIHSLELYKDAAMIVINKPPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLVHRLDRDS 354
           FI  LELYKD A+IV+NKPPGMPVQGG+GIKSS DELAA  L YDYSE PRLVHRLDRDS
Sbjct: 242 FIRGLELYKDEAIIVVNKPPGMPVQGGIGIKSSFDELAASCLSYDYSEPPRLVHRLDRDS 301

Query: 355 SGILVMGRTQLSTTILHSIFREKTFGASN-DVPGSDRILQ 471
           SGILVMGRTQ ST +LHS+FREKTF ASN D+    RILQ
Sbjct: 302 SGILVMGRTQTSTMVLHSVFREKTFAASNHDIGERRRILQ 341


>ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Populus trichocarpa]
           gi|550331407|gb|EEE87831.2| hypothetical protein
           POPTR_0009s09860g [Populus trichocarpa]
          Length = 471

 Score =  179 bits (454), Expect = 3e-43
 Identities = 96/147 (65%), Positives = 109/147 (74%), Gaps = 1/147 (0%)
 Frame = +1

Query: 34  KEQRPRRIGAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFIHSLELYKDAAM 213
           +E R +R+ AKD MD+GD+IFLP SV      K        NEEE+ FI  LELYKDAA+
Sbjct: 133 QEHRLKRVAAKDSMDVGDRIFLPISVKVLPAEK---QDCHCNEEEINFIRGLELYKDAAI 189

Query: 214 IVINKPPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLVHRLDRDSSGILVMGRTQLST 393
           IV+NKPPGMPVQGG+GIK SLDEL+A     DYSE PRLVHRLDRD SGILVMGRTQ S 
Sbjct: 190 IVVNKPPGMPVQGGIGIKRSLDELSASCFSSDYSEPPRLVHRLDRDCSGILVMGRTQTSA 249

Query: 394 TILHSIFREKTFGASNDVPGSD-RILQ 471
           T+LH+IFREKT  ASND  G+  RILQ
Sbjct: 250 TVLHAIFREKTLAASNDDVGNKRRILQ 276


>ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Fragaria
           vesca subsp. vesca]
          Length = 476

 Score =  178 bits (451), Expect = 7e-43
 Identities = 93/149 (62%), Positives = 112/149 (75%)
 Frame = +1

Query: 1   QIRKECSNSLSKEQRPRRIGAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFI 180
           Q+R+E S+     Q  +R+G KD M++GD+I LP SV      K  + +   +EEE +FI
Sbjct: 115 QVRREASDMDQSVQPLKRVGTKDSMNLGDRICLPISVKEFPDHK--QKEGHCSEEEAEFI 172

Query: 181 HSLELYKDAAMIVINKPPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLVHRLDRDSSG 360
            SL LYKD A+IVINKPPG+PVQGG+GIK SLDELAA  L YD S+ PRLVHRLDRD SG
Sbjct: 173 RSLVLYKDPAIIVINKPPGLPVQGGIGIKRSLDELAATCLSYDLSQPPRLVHRLDRDCSG 232

Query: 361 ILVMGRTQLSTTILHSIFREKTFGASNDV 447
           ILVMGRTQ S T+LHS+FREKTFGAS+DV
Sbjct: 233 ILVMGRTQTSATVLHSVFREKTFGASDDV 261


>ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [Amborella trichopoda]
           gi|548850328|gb|ERN08832.1| hypothetical protein
           AMTR_s00015p00025410 [Amborella trichopoda]
          Length = 457

 Score =  176 bits (447), Expect = 2e-42
 Identities = 92/157 (58%), Positives = 120/157 (76%), Gaps = 8/157 (5%)
 Frame = +1

Query: 1   QIRKE--------CSNSLSKEQRPRRIGAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFS 156
           Q+RKE        C +  ++ Q+ +R+ AKD ++ GD+IFLP +V+   P+  VE+    
Sbjct: 101 QVRKESLNPAIASCLHKQAQYQQIKRVFAKDTLNSGDRIFLPITVN---PAVEVEDDYIC 157

Query: 157 NEEEMKFIHSLELYKDAAMIVINKPPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLVH 336
           N+EEM++I SLE+YKDAA++V+NKPPG+PVQGG G+K SLD L A  L+YDYSE PRLVH
Sbjct: 158 NKEEMEYIRSLEVYKDAAIVVVNKPPGLPVQGGTGVKLSLDVLVASSLKYDYSEVPRLVH 217

Query: 337 RLDRDSSGILVMGRTQLSTTILHSIFREKTFGASNDV 447
           RLD+DSSGILVMGRTQ STT+LHSIFR+KT GAS +V
Sbjct: 218 RLDQDSSGILVMGRTQESTTLLHSIFRDKTCGASFNV 254


>ref|XP_006486999.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
           X1 [Citrus sinensis] gi|568867349|ref|XP_006487000.1|
           PREDICTED: RNA pseudouridine synthase 4,
           mitochondrial-like isoform X2 [Citrus sinensis]
          Length = 362

 Score =  174 bits (442), Expect = 8e-42
 Identities = 94/147 (63%), Positives = 115/147 (78%), Gaps = 1/147 (0%)
 Frame = +1

Query: 34  KEQRPRRIGAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFIHSLELYKDAAM 213
           +E + +R+ AKD + +GD+IFLP S+  +SPS+  + +    EEE++FI SLELYKD+A+
Sbjct: 23  QEIKLKRVAAKDSLKLGDRIFLPISIQ-ESPSR--KEKCPCTEEEVEFIQSLELYKDSAI 79

Query: 214 IVINKPPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLVHRLDRDSSGILVMGRTQLST 393
           IVINKP GMPVQGG+GI+ S+DELAA  L YDYSE PRLVHRLDRDSSGILVMGRTQ S 
Sbjct: 80  IVINKPHGMPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSA 139

Query: 394 TILHSIFREKTFGAS-NDVPGSDRILQ 471
           T+LHSIFREKTF AS  D     +ILQ
Sbjct: 140 TVLHSIFREKTFSASKEDNDNEKKILQ 166


>ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citrus clementina]
           gi|557524859|gb|ESR36165.1| hypothetical protein
           CICLE_v10028283mg [Citrus clementina]
          Length = 494

 Score =  174 bits (442), Expect = 8e-42
 Identities = 95/147 (64%), Positives = 114/147 (77%), Gaps = 1/147 (0%)
 Frame = +1

Query: 34  KEQRPRRIGAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFIHSLELYKDAAM 213
           +E + +R+ AKD + +GD+IFLP S+  +SPS+  + +    EEE+ FI SLELYKD+A+
Sbjct: 155 QEIKLKRVAAKDSLKLGDRIFLPISIQ-ESPSR--KEKCPCTEEEVGFIQSLELYKDSAI 211

Query: 214 IVINKPPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLVHRLDRDSSGILVMGRTQLST 393
           IVINKP GMPVQGG+GI+ S+DELAA  L YDYSE PRLVHRLDRDSSGILVMGRTQ S 
Sbjct: 212 IVINKPHGMPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSA 271

Query: 394 TILHSIFREKTFGAS-NDVPGSDRILQ 471
           T+LHSIFREKTF AS  D     RILQ
Sbjct: 272 TVLHSIFREKTFSASKEDNDNEKRILQ 298


>ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
           sativus]
          Length = 466

 Score =  174 bits (442), Expect = 8e-42
 Identities = 92/159 (57%), Positives = 116/159 (72%), Gaps = 3/159 (1%)
 Frame = +1

Query: 1   QIRKECSNSLSKEQRPRRIGAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFI 180
           Q+   C NS     + +R+ AKD++++GD+IFLP SV   S  KT   + + N+EE  F+
Sbjct: 125 QLNVGCGNS---HHQLKRVAAKDILNVGDQIFLPMSVQVFSTEKT---RDYCNKEEETFM 178

Query: 181 HSLELYKDAAMIVINKPPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLVHRLDRDSSG 360
           HSL L+KD A++VINKPPG+PVQGG+G+K SLDELAA  L Y YSE PRLVHRLDRDSSG
Sbjct: 179 HSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSYGYSEPPRLVHRLDRDSSG 238

Query: 361 ILVMGRTQLSTTILHSIFREKTFGAS---NDVPGSDRIL 468
           IL+MGRT  ST++LHS+FREKTF AS   N V    +IL
Sbjct: 239 ILIMGRTSTSTSLLHSVFREKTFEASKHANHVDSEKKIL 277


>gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theobroma cacao]
          Length = 477

 Score =  174 bits (441), Expect = 1e-41
 Identities = 94/142 (66%), Positives = 110/142 (77%), Gaps = 1/142 (0%)
 Frame = +1

Query: 49  RRIGAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFIHSLELYKDAAMIVINK 228
           +R+GAKD ++IGD+IFLP SV      K    +S   EEE+ FI  LELYKD A+IV+NK
Sbjct: 143 KRVGAKDALNIGDRIFLPFSVREFREEK---QESGCTEEELNFIRGLELYKDPAIIVLNK 199

Query: 229 PPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLVHRLDRDSSGILVMGRTQLSTTILHS 408
           PPGMPVQGG+GIK SLD+LAA  L +DYSE PRLVHRLDRDSSGILVMGRTQ+S TILHS
Sbjct: 200 PPGMPVQGGIGIKWSLDKLAAACLCFDYSEPPRLVHRLDRDSSGILVMGRTQMSATILHS 259

Query: 409 IFREKTFGAS-NDVPGSDRILQ 471
           +FRE+T  AS +DV    RILQ
Sbjct: 260 VFREETNDASKDDVDNEKRILQ 281


>ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score =  173 bits (438), Expect = 2e-41
 Identities = 89/151 (58%), Positives = 113/151 (74%), Gaps = 3/151 (1%)
 Frame = +1

Query: 25  SLSKEQRPRRIGAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFIHSLELYKD 204
           +L    + +R+ AKD++++GD+IFLP SV   S  KT   + + N+EE  F+HSL L+KD
Sbjct: 135 NLEARDQLKRVAAKDILNVGDQIFLPMSVQVFSTEKT---RDYCNKEEETFMHSLVLHKD 191

Query: 205 AAMIVINKPPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLVHRLDRDSSGILVMGRTQ 384
            A++VINKPPG+PVQGG+G+K SLDELAA  L Y YSE PRLVHRLDRDSSGIL+MGRT 
Sbjct: 192 PAILVINKPPGLPVQGGIGVKRSLDELAASCLSYGYSEPPRLVHRLDRDSSGILIMGRTS 251

Query: 385 LSTTILHSIFREKTFGAS---NDVPGSDRIL 468
            ST++LHS+FREKTF AS   N V    +IL
Sbjct: 252 TSTSLLHSVFREKTFEASKHANHVDSEKKIL 282


>ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Capsella rubella]
           gi|482566291|gb|EOA30480.1| hypothetical protein
           CARUB_v10013603mg [Capsella rubella]
          Length = 476

 Score =  164 bits (414), Expect = 1e-38
 Identities = 86/151 (56%), Positives = 112/151 (74%), Gaps = 5/151 (3%)
 Frame = +1

Query: 1   QIRKECSNSLSKEQRPR----RIGAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFS-NEE 165
           Q+R+E S S   ++  R    R+ AK+ +++GD+I+LP SVD  +P    + +SF  +EE
Sbjct: 116 QVRREMSVSCDGDEVQRSQLKRVAAKESLNVGDRIYLPLSVDNDAPPPPAKKESFRCSEE 175

Query: 166 EMKFIHSLELYKDAAMIVINKPPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLVHRLD 345
           E KF+ SL LYKD ++IV+NKP GM VQGG GIK+S+DELAA  L +D SESPRLVHRLD
Sbjct: 176 ERKFVCSLVLYKDPSIIVLNKPHGMAVQGGTGIKTSIDELAATCLTFDKSESPRLVHRLD 235

Query: 346 RDSSGILVMGRTQLSTTILHSIFREKTFGAS 438
           RD SG+LV+ RTQ + T+LHSIFREKT GAS
Sbjct: 236 RDCSGLLVLARTQTAATVLHSIFREKTSGAS 266


>ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
           gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA
           pseudouridine synthase 4, mitochondrial; AltName:
           Full=RNA pseudouridylate synthase 4; AltName:
           Full=RNA-uridine isomerase 4; Flags: Precursor
           gi|11994467|dbj|BAB02469.1| unnamed protein product
           [Arabidopsis thaliana] gi|110737723|dbj|BAF00800.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis
           thaliana] gi|332642719|gb|AEE76240.1| RNA pseudourine
           synthase 4 [Arabidopsis thaliana]
          Length = 477

 Score =  162 bits (409), Expect = 6e-38
 Identities = 85/152 (55%), Positives = 115/152 (75%), Gaps = 6/152 (3%)
 Frame = +1

Query: 1   QIRKECSNSLSKEQRPR----RIGAKDLMDIGDKIFLPKSVDGKSP-SKTVENQSFS-NE 162
           Q+R+E S S+  ++  R    R+ AK+ +++GD+I+LP SVD  +P +   + +SF  ++
Sbjct: 116 QVRREMSMSVDGDELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTPQTPPAKKESFQCSD 175

Query: 163 EEMKFIHSLELYKDAAMIVINKPPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLVHRL 342
           EE KF+ SL LYKD A+IV+NKP G+ VQGG GIK+S+DELAA  L++D SESPRLVHRL
Sbjct: 176 EERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELAASCLKFDKSESPRLVHRL 235

Query: 343 DRDSSGILVMGRTQLSTTILHSIFREKTFGAS 438
           DRD SG+LV+ RTQ + T+LHSIFREKT GAS
Sbjct: 236 DRDCSGLLVLARTQTAATVLHSIFREKTTGAS 267


>gb|ESW29223.1| hypothetical protein PHAVU_002G053600g [Phaseolus vulgaris]
          Length = 432

 Score =  161 bits (408), Expect = 7e-38
 Identities = 83/141 (58%), Positives = 105/141 (74%)
 Frame = +1

Query: 49  RRIGAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFIHSLELYKDAAMIVINK 228
           +R+ AKD ++ GD+I LP+SV  K P+ T +  S    +++ FI +L ++KD A++V+NK
Sbjct: 98  KRVAAKDTLNSGDRILLPQSVQQK-PTPTRKPHSSLTPQQINFIRTLVIHKDPAILVLNK 156

Query: 229 PPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLVHRLDRDSSGILVMGRTQLSTTILHS 408
           PPGMPVQGG+ IK SLD +AA  L Y+YSE PRLVHRLDRD SGILVMGRTQ STT+LHS
Sbjct: 157 PPGMPVQGGINIKHSLDVVAAACLNYEYSEPPRLVHRLDRDCSGILVMGRTQTSTTVLHS 216

Query: 409 IFREKTFGASNDVPGSDRILQ 471
           IFREKT  A +D     RILQ
Sbjct: 217 IFREKTSRALDDTEEEKRILQ 237


>ref|XP_004511295.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cicer
           arietinum]
          Length = 458

 Score =  161 bits (407), Expect = 9e-38
 Identities = 83/142 (58%), Positives = 103/142 (72%), Gaps = 1/142 (0%)
 Frame = +1

Query: 49  RRIGAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFS-NEEEMKFIHSLELYKDAAMIVIN 225
           +R+GAKD ++ GD+IFLP SV  +   +    Q  +   +++KF+ SL +YKD A +V+N
Sbjct: 120 KRVGAKDTLNSGDRIFLPNSVKQQHQHQQTPKQPLTLTPKQIKFMRSLVIYKDPATVVLN 179

Query: 226 KPPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLVHRLDRDSSGILVMGRTQLSTTILH 405
           KPPGMPVQGG+ IK SLD LAA  L YDYS+ PRLVHRLDRD SGILVMGRTQ ST +LH
Sbjct: 180 KPPGMPVQGGINIKWSLDALAASSLNYDYSQPPRLVHRLDRDCSGILVMGRTQTSTVVLH 239

Query: 406 SIFREKTFGASNDVPGSDRILQ 471
           SIFR+KT  AS+      RILQ
Sbjct: 240 SIFRDKTSRASDHNDTEKRILQ 261


>ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
           X1 [Glycine max]
          Length = 427

 Score =  159 bits (402), Expect = 4e-37
 Identities = 82/146 (56%), Positives = 104/146 (71%)
 Frame = +1

Query: 34  KEQRPRRIGAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFIHSLELYKDAAM 213
           ++Q  +R+ AKD ++ GD+I LP+SV  K         S    +++ FI +L +YKD A+
Sbjct: 91  QQQTFKRVAAKDTLNTGDRILLPQSVKVKQ----TPTHSHLTPQQINFIRTLVIYKDPAI 146

Query: 214 IVINKPPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLVHRLDRDSSGILVMGRTQLST 393
           +V+NKPPGMPVQGG+ IK SLD +AA  L Y YS+ PRLVHRLDRD SGILVMGRT  ST
Sbjct: 147 LVLNKPPGMPVQGGINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILVMGRTHTST 206

Query: 394 TILHSIFREKTFGASNDVPGSDRILQ 471
           T+LHSIFREKT  AS+D+    RILQ
Sbjct: 207 TVLHSIFREKTSRASDDIGKEKRILQ 232