BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00017620
         (1144 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]              600   e-169
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]     584   e-164
gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]             576   e-162
gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea bat...   576   e-162
emb|CAN80356.1| hypothetical protein VITISV_003506 [Vitis vinifera]   570   e-160
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                         563   e-158
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...   561   e-157
emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group]                557   e-156
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni...   557   e-156
emb|CAE02411.2| OSJNBa0024J22.19 [Oryza sativa Japonica Group]        557   e-156
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]       556   e-156
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ...   556   e-156
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ...   556   e-156
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...   554   e-155
emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]        554   e-155
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                  552   e-155
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...   552   e-154
emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group]         550   e-154
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni...   549   e-154
emb|CAD39843.2| OSJNBb0072N21.12 [Oryza sativa Japonica Group]        549   e-154

>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
          Length = 1887

 Score =  600 bits (1547), Expect = e-169
 Identities = 284/381 (74%), Positives = 334/381 (87%)
 Frame = +1

Query: 1    FPYEMPD*LLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSKKLIRESM 180
            FP E P  L PI GIEHQIDF+PGASLPNRPAYR+N  ETKEL++QV EL+ +  IRESM
Sbjct: 884  FPEENPVGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKELEKQVTELMERGHIRESM 943

Query: 181  SPCAVPILQVPKKDGSWRMCVECRAINNITIKYRYPVPRLDDTLEELHGSNIFSKIDLRS 360
            SPCAVP+L VPKKDGSWRMCV+CRAINNIT+KYR+P+PRLDD L+ELHGS+IFSK+DL+S
Sbjct: 944  SPCAVPVLLVPKKDGSWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSSIFSKVDLKS 1003

Query: 361  GYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKFVVVYF 540
            GYHQIRM+EGDEWKTAFKT  GLYEWLVMPFG+TNAPSTFMRLMNH+LRAFIG+FV+VYF
Sbjct: 1004 GYHQIRMKEGDEWKTAFKTIQGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGRFVIVYF 1063

Query: 541  DDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFLVNSRGIMVDEE 720
            DDIL+Y+KSL EH++HL+ VLEVLRKEKLYAN+KKCTF +  L+FLGF+V++ G+ VDEE
Sbjct: 1064 DDILVYSKSLEEHVEHLKMVLEVLRKEKLYANLKKCTFGTDNLVFLGFVVSTDGVKVDEE 1123

Query: 721  KIKAI*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGEAQDRA 900
            K+KAI +WP P S  +VRSFHGLA F RRFV DFSTLAAPL  +IKK+V F+W +AQ+ A
Sbjct: 1124 KVKAIREWPSPKSVGEVRSFHGLAGFYRRFVKDFSTLAAPLTEVIKKNVGFKWEQAQEDA 1183

Query: 901  FEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAVLMQERRMNAFFSDKLSGAALNYP 1080
            F+ LKE+L HAP+L+LPDF K FEIECDASGVGIG VLMQ+++  A+FS+KL GA LNYP
Sbjct: 1184 FQALKEKLTHAPVLSLPDFLKTFEIECDASGVGIGVVLMQDKKPIAYFSEKLGGATLNYP 1243

Query: 1081 TYDKELYALVWALKTWQHYLW 1143
            TYDKELYALV AL+T QHYLW
Sbjct: 1244 TYDKELYALVRALQTGQHYLW 1264


>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1713

 Score =  584 bits (1505), Expect = e-164
 Identities = 277/381 (72%), Positives = 325/381 (85%)
 Frame = +1

Query: 1    FPYEMPD*LLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSKKLIRESM 180
            FP E P  L P+ GIEHQID IPGA+LPNRPAYR+N EETKE+QRQV  LL K  +RES+
Sbjct: 695  FPEETPVGLPPLRGIEHQIDLIPGATLPNRPAYRTNPEETKEIQRQVQALLDKGYVRESL 754

Query: 181  SPCAVPILQVPKKDGSWRMCVECRAINNITIKYRYPVPRLDDTLEELHGSNIFSKIDLRS 360
            SPCAVP++ VPKKDGSWRMCV+CRAINNIT++YR+P+PRLDD L+EL GS IFSKIDLRS
Sbjct: 755  SPCAVPVILVPKKDGSWRMCVDCRAINNITVRYRHPIPRLDDMLDELSGSMIFSKIDLRS 814

Query: 361  GYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKFVVVYF 540
            G+HQIRM+ GDEWKTAFKTK GLYEWLVMPFG+TNAPSTFMRLMNH+LRAFIGKFVVVYF
Sbjct: 815  GFHQIRMKIGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGKFVVVYF 874

Query: 541  DDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFLVNSRGIMVDEE 720
            DDILIY+K+L EH+ H++ VL+VLRKE+LYAN++KCTFC+ Q++FLGF+V+  GI VDE 
Sbjct: 875  DDILIYSKTLEEHVAHIQQVLDVLRKEQLYANLEKCTFCTDQVVFLGFVVSGLGIQVDES 934

Query: 721  KIKAI*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGEAQDRA 900
            K+KAI DWP P + SQV+SF GLA F RRFV  FST+AAPL  + KK VAFQWGE Q++A
Sbjct: 935  KVKAIKDWPTPENVSQVKSFRGLAGFYRRFVRGFSTIAAPLNELTKKGVAFQWGEPQEKA 994

Query: 901  FEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAVLMQERRMNAFFSDKLSGAALNYP 1080
            F+ LK+RL+  PLL LPDFTK FE+ECDASG+GIG VLMQ  +  A+FS+KL GA LNY 
Sbjct: 995  FQELKKRLSEGPLLVLPDFTKTFEVECDASGIGIGGVLMQNGQPVAYFSEKLGGAQLNYS 1054

Query: 1081 TYDKELYALVWALKTWQHYLW 1143
             YDKELYALV AL+TWQHYLW
Sbjct: 1055 VYDKELYALVRALETWQHYLW 1075


>gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]
          Length = 1004

 Score =  576 bits (1484), Expect = e-162
 Identities = 275/380 (72%), Positives = 328/380 (86%)
 Frame = +1

Query: 1    FPYEMPD*LLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSKKLIRESM 180
            FP E+P  L PI GIEH ID  PGASLPNRPAYRSN ++T+E+QRQV EL+SK  +RES+
Sbjct: 582  FPEEVPSGLPPIRGIEHHIDLNPGASLPNRPAYRSNPQQTQEIQRQVAELISKGWVRESL 641

Query: 181  SPCAVPILQVPKKDGSWRMCVECRAINNITIKYRYPVPRLDDTLEELHGSNIFSKIDLRS 360
            SPCAVPI+ VPKKDGSWRMC +CRAI+NITIKYR+P+PRLDD L+EL G+ +FSKIDL+S
Sbjct: 642  SPCAVPIILVPKKDGSWRMCTDCRAISNITIKYRHPIPRLDDLLDELFGACLFSKIDLKS 701

Query: 361  GYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKFVVVYF 540
            GYHQIR+REGDEWKTAFKTK GLYEW+VMPFG+TNAPSTFMRLMNH+LR F+GKFVVVYF
Sbjct: 702  GYHQIRIREGDEWKTAFKTKFGLYEWMVMPFGLTNAPSTFMRLMNHVLREFLGKFVVVYF 761

Query: 541  DDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFLVNSRGIMVDEE 720
            DDILIY+K+L +H  HL+AVL+VLR E LYAN++KC FC+  +IFLGF+V+S+G+ VDEE
Sbjct: 762  DDILIYSKNLDDHCIHLKAVLQVLRYENLYANLEKCVFCTDHVIFLGFIVSSKGVHVDEE 821

Query: 721  KIKAI*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGEAQDRA 900
            K+KAI +WP P + S+VRSFHGLASF RRFV DFSTLAAPL  I++K V F+WGE Q++A
Sbjct: 822  KVKAIREWPPPKNVSEVRSFHGLASFYRRFVKDFSTLAAPLNEIVEKDVGFKWGEKQEQA 881

Query: 901  FEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAVLMQERRMNAFFSDKLSGAALNYP 1080
            F  LKE+L  AP+LALP+F+K FEIECDAS VGIGAVL+QE    A+FS+KL GAALNY 
Sbjct: 882  FAALKEKLTQAPVLALPNFSKSFEIECDASNVGIGAVLLQEGHPLAYFSEKLKGAALNYS 941

Query: 1081 TYDKELYALVWALKTWQHYL 1140
            TYDKELY+LV AL+TWQHYL
Sbjct: 942  TYDKELYSLVRALQTWQHYL 961


>gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea batatas]
          Length = 1358

 Score =  576 bits (1484), Expect = e-162
 Identities = 274/381 (71%), Positives = 325/381 (85%)
 Frame = +1

Query: 1    FPYEMPD*LLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSKKLIRESM 180
            FP E+P  L PI GIEHQID IPGASLPNRPAYR+N +E KE+QRQVDELL    I+ES+
Sbjct: 635  FPEELPKGLPPIRGIEHQIDLIPGASLPNRPAYRTNPDEAKEIQRQVDELLQAGFIQESL 694

Query: 181  SPCAVPILQVPKKDGSWRMCVECRAINNITIKYRYPVPRLDDTLEELHGSNIFSKIDLRS 360
            SPCAVP+L VPKKDG+WRMCV+CRAINNIT+KYRYP+PRLDD L+ELHG+ IFSKIDLR 
Sbjct: 695  SPCAVPVLLVPKKDGTWRMCVDCRAINNITVKYRYPIPRLDDMLDELHGAKIFSKIDLRR 754

Query: 361  GYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKFVVVYF 540
            GYHQIRM++GDEWKTAFKTK+GLYEWLVMPFG+TNAPSTFMRLMNH+LR FIGKFVVVYF
Sbjct: 755  GYHQIRMQKGDEWKTAFKTKNGLYEWLVMPFGLTNAPSTFMRLMNHVLRNFIGKFVVVYF 814

Query: 541  DDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFLVNSRGIMVDEE 720
            DDILIY+K   +H+ HL+ V  VLR+E+LYAN++KC F    ++FLGF+V+S+GI VDE 
Sbjct: 815  DDILIYSKDPQKHIIHLKEVFLVLRREQLYANLEKCYFGVESVVFLGFIVSSKGIEVDET 874

Query: 721  KIKAI*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGEAQDRA 900
            KI+AI DWP P +A++VRSFHGLASF RRFV DFST+AAPL  ++KK V F+WG  Q++A
Sbjct: 875  KIQAIRDWPTPKTATKVRSFHGLASFYRRFVKDFSTIAAPLNELVKKDVKFEWGPKQEQA 934

Query: 901  FEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAVLMQERRMNAFFSDKLSGAALNYP 1080
            F+ LKE+L  A +L+LP+F K FEIECDASG+GIGAVLMQE    A+FS+KLSG ALNY 
Sbjct: 935  FQTLKEKLCSAQVLSLPNFDKTFEIECDASGIGIGAVLMQEGHPIAYFSEKLSGPALNYS 994

Query: 1081 TYDKELYALVWALKTWQHYLW 1143
            TYDKELYALV  L+TW+HYLW
Sbjct: 995  TYDKELYALVRTLETWEHYLW 1015


>emb|CAN80356.1| hypothetical protein VITISV_003506 [Vitis vinifera]
          Length = 960

 Score =  570 bits (1469), Expect = e-160
 Identities = 270/369 (73%), Positives = 324/369 (87%)
 Frame = +1

Query: 1    FPYEMPD*LLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSKKLIRESM 180
            FP ++P  L PI GIEHQIDF+PGA++PNR AYRSN EETKELQRQV+ELL+K  +RESM
Sbjct: 172  FPNDVPSGLPPIRGIEHQIDFVPGATIPNRLAYRSNLEETKELQRQVEELLTKGHVRESM 231

Query: 181  SPCAVPILQVPKKDGSWRMCVECRAINNITIKYRYPVPRLDDTLEELHGSNIFSKIDLRS 360
             PCA+ +L VPKKDG+WRMCV+CRAINNIT+KYR+P+PRLDD L+ELHGS +F KIDL+S
Sbjct: 232  RPCAILVLLVPKKDGTWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSCVFIKIDLKS 291

Query: 361  GYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKFVVVYF 540
            GYHQIRM+EGDEWKTAFKTK+GLYEWLVMPFG+TNA STFMRLMNH+LRAFIG+FVVVYF
Sbjct: 292  GYHQIRMKEGDEWKTAFKTKYGLYEWLVMPFGLTNALSTFMRLMNHVLRAFIGRFVVVYF 351

Query: 541  DDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFLVNSRGIMVDEE 720
            DDIL+Y+K+L EH++HL  VL +LRKEKLYAN+KKC+FC  +++FLG++V+++GI VDEE
Sbjct: 352  DDILVYSKNLDEHINHLHCVLAILRKEKLYANLKKCSFCMDKVVFLGYVVSAKGIEVDEE 411

Query: 721  KIKAI*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGEAQDRA 900
            K+KAI +WP P S ++VRSFHGLASF  RFV DFSTLAAPL  I+KKSV F+WG  QDRA
Sbjct: 412  KLKAIKEWPTPKSITEVRSFHGLASFYFRFVKDFSTLAAPLTEIVKKSVGFKWGSEQDRA 471

Query: 901  FEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAVLMQERRMNAFFSDKLSGAALNYP 1080
            F  +KERL  APLL+LP+F+K FEIECDASG+GI  VLMQE+R  A+FS+KL+GA LNYP
Sbjct: 472  FIEIKERLCGAPLLSLPNFSKTFEIECDASGIGIATVLMQEKRPIAYFSEKLNGATLNYP 531

Query: 1081 TYDKELYAL 1107
            TYDKELYAL
Sbjct: 532  TYDKELYAL 540


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score =  563 bits (1451), Expect = e-158
 Identities = 264/381 (69%), Positives = 318/381 (83%)
 Frame = +1

Query: 1    FPYEMPD*LLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSKKLIRESM 180
            FP E+P+ L PI GIEHQID IPGASLPNR  YR+N EETKE+QRQV ELL K  +RES+
Sbjct: 695  FPSEIPEGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESL 754

Query: 181  SPCAVPILQVPKKDGSWRMCVECRAINNITIKYRYPVPRLDDTLEELHGSNIFSKIDLRS 360
            SPCAVP++ VPKKDG+WRMCV+CRAINNITI+YR+P+PRLDD L+EL G+ +FSK+DLRS
Sbjct: 755  SPCAVPVILVPKKDGTWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGAIVFSKVDLRS 814

Query: 361  GYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKFVVVYF 540
            GYHQIRM+ GDEWKTAFKTK GLYEWLVMPFG+TNAPSTFMRLMN +LRAFIGKFVVVYF
Sbjct: 815  GYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGKFVVVYF 874

Query: 541  DDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFLVNSRGIMVDEE 720
            DDILIY+KS+ EH+DH+RAV   LR  +L+ N++KCTFC+ ++ FLG++V  +GI VD+ 
Sbjct: 875  DDILIYSKSMDEHVDHMRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQA 934

Query: 721  KIKAI*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGEAQDRA 900
            K++AI  WP P + +QVRSF GLA F RRFV DFST+AAPL  + KK V F WG+ Q+ A
Sbjct: 935  KVEAIHGWPMPKTITQVRSFLGLAGFYRRFVKDFSTIAAPLNELTKKGVHFSWGKVQEHA 994

Query: 901  FEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAVLMQERRMNAFFSDKLSGAALNYP 1080
            F  LK++L HAPLL LPDF K FE+ECDASG+G+G VL+QE +  A+FS+KLSG+ LNY 
Sbjct: 995  FNVLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGSVLNYS 1054

Query: 1081 TYDKELYALVWALKTWQHYLW 1143
            TYDKELYALV  L+TWQHYLW
Sbjct: 1055 TYDKELYALVRTLETWQHYLW 1075


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score =  561 bits (1447), Expect = e-157
 Identities = 265/381 (69%), Positives = 314/381 (82%)
 Frame = +1

Query: 1    FPYEMPD*LLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSKKLIRESM 180
            FP E+P  L P+ GIEHQID IPGASLPNR  YR+N EETKE+QRQV ELL K  +RES+
Sbjct: 692  FPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESL 751

Query: 181  SPCAVPILQVPKKDGSWRMCVECRAINNITIKYRYPVPRLDDTLEELHGSNIFSKIDLRS 360
            SPCAVP++ VPKKDGSWRMCV+CRAINNITI+YR+P+PRLDD L+EL GS +FSK+DLRS
Sbjct: 752  SPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSKVDLRS 811

Query: 361  GYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKFVVVYF 540
            GYHQIRM+ GDEWKTAFKTK GLYEWLVMPFG+TNAPSTFMRLMN +LR FIGKFVVVYF
Sbjct: 812  GYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFVVVYF 871

Query: 541  DDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFLVNSRGIMVDEE 720
            DDILIY+KS+ EH +HLRAV   LR  +L+ N++KCTFC+ ++ FLG++V  +GI VD+ 
Sbjct: 872  DDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQA 931

Query: 721  KIKAI*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGEAQDRA 900
            K++AI  WP P + SQVRSF GLA F RRFV DFST+AAPL  + KK V F WG +Q+ A
Sbjct: 932  KVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNVLTKKGVPFTWGTSQENA 991

Query: 901  FEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAVLMQERRMNAFFSDKLSGAALNYP 1080
            F  LK++L HAPLL LPDF K FE+ECDASG+G+G VL+QE +  A+FS+KLSG  LNY 
Sbjct: 992  FHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPVLNYS 1051

Query: 1081 TYDKELYALVWALKTWQHYLW 1143
            TYDKELYALV  L+TWQHYLW
Sbjct: 1052 TYDKELYALVRTLETWQHYLW 1072



 Score =  234 bits (597), Expect = 5e-59
 Identities = 118/261 (45%), Positives = 172/261 (65%), Gaps = 2/261 (0%)
 Frame = +1

Query: 364  YHQIRMREGDEWKT--AFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKFVVVY 537
            +H+     GD+  T  +    +GLYE+ VM FG+TNAP+ FM LMN +   ++ KFVVV+
Sbjct: 1603 HHKFAATIGDDRATNPSGFASYGLYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVF 1662

Query: 538  FDDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFLVNSRGIMVDE 717
             DDIL+Y++S  +H  HLR VL  LR+ +LYA + KC F   ++ FLG +++++G+ VD 
Sbjct: 1663 IDDILVYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVISAKGVAVDP 1722

Query: 718  EKIKAI*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGEAQDR 897
            E + A+ DW +P + +Q+RSF GLA + RRF+ +FS +A P+  ++KK   F W    ++
Sbjct: 1723 ETVTAVTDWKQPKTVTQIRSFLGLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQCEK 1782

Query: 898  AFEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAVLMQERRMNAFFSDKLSGAALNY 1077
            AF+ LKE+L  +P+L LPD  K F + CDAS  G+G VLMQE  + A+ S +L     NY
Sbjct: 1783 AFQTLKEKLVSSPVLILPDTRKDFMVYCDASPQGLGCVLMQEGHVVAYASRQLWPHEGNY 1842

Query: 1078 PTYDKELYALVWALKTWQHYL 1140
            PT+D EL A+V ALK W+HYL
Sbjct: 1843 PTHDLELAAVVHALKIWRHYL 1863


>emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group]
          Length = 1667

 Score =  557 bits (1436), Expect = e-156
 Identities = 264/381 (69%), Positives = 313/381 (82%)
 Frame = +1

Query: 1    FPYEMPD*LLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSKKLIRESM 180
            FP E+P  L P+ GIEHQID IPGASLPNR  YR+N EETKE+QRQV ELL K  +RES+
Sbjct: 615  FPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESL 674

Query: 181  SPCAVPILQVPKKDGSWRMCVECRAINNITIKYRYPVPRLDDTLEELHGSNIFSKIDLRS 360
            SPCAV ++ VPKKDGSWRMCV+CRAINNITI+YR+P+PRLDD L+EL GS +FSK+DLRS
Sbjct: 675  SPCAVLVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSKVDLRS 734

Query: 361  GYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKFVVVYF 540
            GYHQIRM  GDEWKTAFKTK GLYEWLVMPFG+TNAP+TFMRLMN +LR FIGKFVVVYF
Sbjct: 735  GYHQIRMNLGDEWKTAFKTKFGLYEWLVMPFGLTNAPTTFMRLMNEVLRPFIGKFVVVYF 794

Query: 541  DDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFLVNSRGIMVDEE 720
            DDILIY+KS+ EH +HLRAV   LR  +L+ N++KCTFC+ ++ FLG++V  +GI VD+ 
Sbjct: 795  DDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQA 854

Query: 721  KIKAI*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGEAQDRA 900
            K++AI  WP P + SQVRSF GLA F RRFV DFST+AAPL A+ KK V F WG +Q+ A
Sbjct: 855  KVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTKKGVPFTWGTSQENA 914

Query: 901  FEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAVLMQERRMNAFFSDKLSGAALNYP 1080
            F  LK++L HAPLL LPDF K FE+ECDASG+G+G VL+QE +  A+FS+KLSG  LNY 
Sbjct: 915  FHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPVLNYS 974

Query: 1081 TYDKELYALVWALKTWQHYLW 1143
            TYDKELYALV  L+TWQHYLW
Sbjct: 975  TYDKELYALVRTLETWQHYLW 995


>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  557 bits (1436), Expect = e-156
 Identities = 263/381 (69%), Positives = 313/381 (82%)
 Frame = +1

Query: 1    FPYEMPD*LLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSKKLIRESM 180
            FP E+P  L P+ GIEHQID IPGASLPNR  YR+N EETKE+QRQV ELL K  +RES+
Sbjct: 671  FPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESL 730

Query: 181  SPCAVPILQVPKKDGSWRMCVECRAINNITIKYRYPVPRLDDTLEELHGSNIFSKIDLRS 360
            SPCAVP++ VPKKDGSWRMCV+CRAINNITI+YR+P+PRLDD L+EL GS +FSK++LRS
Sbjct: 731  SPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSKVELRS 790

Query: 361  GYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKFVVVYF 540
            GYHQI M+ GDEWKTAFKTK GLYEWLVMPFG+TNAPSTFMRLMN +LR FIGKFVVVYF
Sbjct: 791  GYHQIHMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFVVVYF 850

Query: 541  DDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFLVNSRGIMVDEE 720
            DDILIY+KS+ EH +HLRAV   LR  +L+ N++KCTFC+ ++ FLG++V  +GI VD+ 
Sbjct: 851  DDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQA 910

Query: 721  KIKAI*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGEAQDRA 900
            K++AI  WP P + SQVRSF GLA F  RFV DFST+AAPL A+ KK V F WG +Q+ A
Sbjct: 911  KVEAIQSWPTPKTVSQVRSFLGLAGFYCRFVQDFSTIAAPLNALTKKGVPFTWGTSQENA 970

Query: 901  FEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAVLMQERRMNAFFSDKLSGAALNYP 1080
            F  LK +L HAPLL LPDF K FE+ECDASG+G+G VL+QE ++ A+FS+KLSG  LNY 
Sbjct: 971  FHMLKHKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKLVAYFSEKLSGPVLNYS 1030

Query: 1081 TYDKELYALVWALKTWQHYLW 1143
            TYDKELYALV  L+TWQHYLW
Sbjct: 1031 TYDKELYALVRTLETWQHYLW 1051


>emb|CAE02411.2| OSJNBa0024J22.19 [Oryza sativa Japonica Group]
          Length = 1667

 Score =  557 bits (1436), Expect = e-156
 Identities = 264/381 (69%), Positives = 313/381 (82%)
 Frame = +1

Query: 1    FPYEMPD*LLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSKKLIRESM 180
            FP E+P  L P+ GIEHQID IPGASLPNR  YR+N EETKE+QRQV ELL K  +RES+
Sbjct: 615  FPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESL 674

Query: 181  SPCAVPILQVPKKDGSWRMCVECRAINNITIKYRYPVPRLDDTLEELHGSNIFSKIDLRS 360
            SPCAV ++ VPKKDGSWRMCV+CRAINNITI+YR+P+PRLDD L+EL GS +FSK+DLRS
Sbjct: 675  SPCAVLVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSKVDLRS 734

Query: 361  GYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKFVVVYF 540
            GYHQIRM  GDEWKTAFKTK GLYEWLVMPFG+TNAP+TFMRLMN +LR FIGKFVVVYF
Sbjct: 735  GYHQIRMNLGDEWKTAFKTKFGLYEWLVMPFGLTNAPTTFMRLMNEVLRPFIGKFVVVYF 794

Query: 541  DDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFLVNSRGIMVDEE 720
            DDILIY+KS+ EH +HLRAV   LR  +L+ N++KCTFC+ ++ FLG++V  +GI VD+ 
Sbjct: 795  DDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQA 854

Query: 721  KIKAI*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGEAQDRA 900
            K++AI  WP P + SQVRSF GLA F RRFV DFST+AAPL A+ KK V F WG +Q+ A
Sbjct: 855  KVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTKKGVPFTWGTSQENA 914

Query: 901  FEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAVLMQERRMNAFFSDKLSGAALNYP 1080
            F  LK++L HAPLL LPDF K FE+ECDASG+G+G VL+QE +  A+FS+KLSG  LNY 
Sbjct: 915  FHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPVLNYS 974

Query: 1081 TYDKELYALVWALKTWQHYLW 1143
            TYDKELYALV  L+TWQHYLW
Sbjct: 975  TYDKELYALVRTLETWQHYLW 995


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score =  556 bits (1432), Expect = e-156
 Identities = 263/381 (69%), Positives = 317/381 (83%)
 Frame = +1

Query: 1    FPYEMPD*LLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSKKLIRESM 180
            FP E+P  L PI GIEHQID IPGASLPNR  YR+N EETKE+QRQV ELL K  +RES+
Sbjct: 720  FPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESL 779

Query: 181  SPCAVPILQVPKKDGSWRMCVECRAINNITIKYRYPVPRLDDTLEELHGSNIFSKIDLRS 360
            SPC+VP+L VPKKDGSWRMCV+CRAINNITI+YR+P+PRLDD L+EL GS +FSKIDLRS
Sbjct: 780  SPCSVPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRS 839

Query: 361  GYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKFVVVYF 540
            GYHQIRM+ GDEWKTAFKTK GLYEWLVMPFG+TNAPSTFMRLMN +LRAFIG+FVVVYF
Sbjct: 840  GYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYF 899

Query: 541  DDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFLVNSRGIMVDEE 720
            DDILIY++S+ +H  HLRAV + LR  +L+ N++KCTFC+ ++ FLG++V  +GI VD+ 
Sbjct: 900  DDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQA 959

Query: 721  KIKAI*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGEAQDRA 900
            K++AI  WP PT+ +QVRSF GLA F RRFV DFST+AAPL  + K++V F W  AQ  A
Sbjct: 960  KVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNA 1019

Query: 901  FEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAVLMQERRMNAFFSDKLSGAALNYP 1080
            F+ LK++L HAPLL LPDF K FE+ECDASG+G+G VL+QE +  A+FS+KLSG +LNY 
Sbjct: 1020 FDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYS 1079

Query: 1081 TYDKELYALVWALKTWQHYLW 1143
            TYDKEL+ALV  L+TWQHYLW
Sbjct: 1080 TYDKELFALVRTLETWQHYLW 1100


>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  556 bits (1432), Expect = e-156
 Identities = 263/381 (69%), Positives = 318/381 (83%)
 Frame = +1

Query: 1    FPYEMPD*LLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSKKLIRESM 180
            FP + P  L P+ GIEHQIDF+PG+ LPNRPAYRSN EETKELQRQV+ELL K  +RESM
Sbjct: 675  FPDDTPKGLPPLRGIEHQIDFVPGSQLPNRPAYRSNPEETKELQRQVEELLVKGFVRESM 734

Query: 181  SPCAVPILQVPKKDGSWRMCVECRAINNITIKYRYPVPRLDDTLEELHGSNIFSKIDLRS 360
            SPC+VP+L VPKKDG+WRMCV+CRAIN IT+KYR+P+PRLDD L++L GS IFSKIDL+S
Sbjct: 735  SPCSVPVLLVPKKDGTWRMCVDCRAINKITVKYRHPIPRLDDMLDQLCGSKIFSKIDLKS 794

Query: 361  GYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKFVVVYF 540
            GYHQIR+  GDEWKTAFKTK+GLYEWLVMPFG+TNAPSTFMRLMNH+ + F GKF+VVYF
Sbjct: 795  GYHQIRLNPGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHVFKDFHGKFIVVYF 854

Query: 541  DDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFLVNSRGIMVDEE 720
            DDILI++++L EHL+HL+ V EVLR ++L+AN+KKCTFC  +++FLGF+V+S G+ VD+E
Sbjct: 855  DDILIFSQNLDEHLEHLKKVFEVLRNQRLFANLKKCTFCVDRVVFLGFVVSSMGVEVDDE 914

Query: 721  KIKAI*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGEAQDRA 900
            KIKAI +WPKP S ++VRSFHGLASF RRFV DFST+AAPL  +IKK   F WG+ QD A
Sbjct: 915  KIKAIKEWPKPNSVTEVRSFHGLASFYRRFVRDFSTIAAPLTEVIKKDKVFTWGKEQDDA 974

Query: 901  FEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAVLMQERRMNAFFSDKLSGAALNYP 1080
            F  LK++L  APLL LPDF+K FE+ECDASG GIGAVLMQ+ +  A+FS+KLSGA LNY 
Sbjct: 975  FNLLKDKLCSAPLLQLPDFSKSFEVECDASGKGIGAVLMQDSKPIAYFSEKLSGATLNYS 1034

Query: 1081 TYDKELYALVWALKTWQHYLW 1143
            T DKELYAL     + +H  W
Sbjct: 1035 TNDKELYALSQGKLSRRHAKW 1055


>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  556 bits (1432), Expect = e-156
 Identities = 263/381 (69%), Positives = 318/381 (83%)
 Frame = +1

Query: 1    FPYEMPD*LLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSKKLIRESM 180
            FP + P  L P+ GIEHQIDF+PG+ LPNRPAYRSN EETKELQRQV+ELL K  +RESM
Sbjct: 675  FPDDTPKGLPPLRGIEHQIDFVPGSQLPNRPAYRSNPEETKELQRQVEELLVKGFVRESM 734

Query: 181  SPCAVPILQVPKKDGSWRMCVECRAINNITIKYRYPVPRLDDTLEELHGSNIFSKIDLRS 360
            SPC+VP+L VPKKDG+WRMCV+CRAIN IT+KYR+P+PRLDD L++L GS IFSKIDL+S
Sbjct: 735  SPCSVPVLLVPKKDGTWRMCVDCRAINKITVKYRHPIPRLDDMLDQLCGSKIFSKIDLKS 794

Query: 361  GYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKFVVVYF 540
            GYHQIR+  GDEWKTAFKTK+GLYEWLVMPFG+TNAPSTFMRLMNH+ + F GKF+VVYF
Sbjct: 795  GYHQIRLNPGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHVFKDFHGKFIVVYF 854

Query: 541  DDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFLVNSRGIMVDEE 720
            DDILI++++L EHL+HL+ V EVLR ++L+AN+KKCTFC  +++FLGF+V+S G+ VD+E
Sbjct: 855  DDILIFSQNLDEHLEHLKKVFEVLRNQRLFANLKKCTFCVDRVVFLGFVVSSMGVEVDDE 914

Query: 721  KIKAI*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGEAQDRA 900
            KIKAI +WPKP S ++VRSFHGLASF RRFV DFST+AAPL  +IKK   F WG+ QD A
Sbjct: 915  KIKAIKEWPKPNSVTEVRSFHGLASFYRRFVRDFSTIAAPLTEVIKKDKVFTWGKEQDDA 974

Query: 901  FEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAVLMQERRMNAFFSDKLSGAALNYP 1080
            F  LK++L  APLL LPDF+K FE+ECDASG GIGAVLMQ+ +  A+FS+KLSGA LNY 
Sbjct: 975  FNLLKDKLCSAPLLQLPDFSKSFEVECDASGKGIGAVLMQDSKPIAYFSEKLSGATLNYS 1034

Query: 1081 TYDKELYALVWALKTWQHYLW 1143
            T DKELYAL     + +H  W
Sbjct: 1035 TNDKELYALSQGKLSRRHAKW 1055


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score =  554 bits (1428), Expect = e-155
 Identities = 261/381 (68%), Positives = 317/381 (83%)
 Frame = +1

Query: 1    FPYEMPD*LLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSKKLIRESM 180
            FP E+P  L PI GIEHQID IPGASLPNR  YR+N EETKE+QRQV ELL K  +RES+
Sbjct: 720  FPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESL 779

Query: 181  SPCAVPILQVPKKDGSWRMCVECRAINNITIKYRYPVPRLDDTLEELHGSNIFSKIDLRS 360
            SPC++P+L VPKKDGSWRMCV+CRAINNITI+YR+P+PRLDD L+EL GS +FSKIDLRS
Sbjct: 780  SPCSIPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRS 839

Query: 361  GYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKFVVVYF 540
            GYHQIRM+ GDEWKTAFKTK GLYEWLVMPFG+TNAPSTF+RLMN +LRAFIG+FVVVYF
Sbjct: 840  GYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFIRLMNEVLRAFIGRFVVVYF 899

Query: 541  DDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFLVNSRGIMVDEE 720
            DDILIY++S+ +H  HLRAV + LR E+L+ N++KCTFC+ ++ FLG++V  +GI VD+ 
Sbjct: 900  DDILIYSRSIEDHHGHLRAVFDALRDERLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQA 959

Query: 721  KIKAI*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGEAQDRA 900
            K++AI  WP PT+ +QVRSF GLA F RRFV DFST+AAPL  + K++V F W  AQ  A
Sbjct: 960  KVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNA 1019

Query: 901  FEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAVLMQERRMNAFFSDKLSGAALNYP 1080
            F+ LK++L HAPLL LPDF K FE+ECDASG+G+G VL+QE +   +FS+KLSG +LNY 
Sbjct: 1020 FDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPIEYFSEKLSGPSLNYS 1079

Query: 1081 TYDKELYALVWALKTWQHYLW 1143
            TYDKEL+ALV  L+TWQHYLW
Sbjct: 1080 TYDKELFALVRTLETWQHYLW 1100


>emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]
          Length = 2241

 Score =  554 bits (1427), Expect = e-155
 Identities = 262/381 (68%), Positives = 311/381 (81%)
 Frame = +1

Query: 1    FPYEMPD*LLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSKKLIRESM 180
            FP E+P  L  + GIEHQID IPGASLPNR  YR+N EETKE+QRQV ELL K  +RES+
Sbjct: 786  FPKEVPPGLPLVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESL 845

Query: 181  SPCAVPILQVPKKDGSWRMCVECRAINNITIKYRYPVPRLDDTLEELHGSNIFSKIDLRS 360
            SPCAVP++ VPKKDGSWRMCV+CRAINN TI+YR+P+PRLDD L+EL GS +FSK+DLRS
Sbjct: 846  SPCAVPVILVPKKDGSWRMCVDCRAINNNTIRYRHPIPRLDDMLDELSGSIVFSKVDLRS 905

Query: 361  GYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKFVVVYF 540
            GYHQIRM+ GDEWKT FKTK GLYEWLVMPFG+TNAPSTFMRLMN +LR FIGKFVVVYF
Sbjct: 906  GYHQIRMKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFVVVYF 965

Query: 541  DDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFLVNSRGIMVDEE 720
            DDILIY+KS+ EH +HLRAV   LR  +L+ N+KKCTFC+ ++ FLG++V  +GI VD+ 
Sbjct: 966  DDILIYSKSMGEHFNHLRAVFNALRDARLFGNLKKCTFCTDRVSFLGYVVTPQGIEVDQA 1025

Query: 721  KIKAI*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGEAQDRA 900
            K++AI  WP P + SQVRSF GLA F RRFV DFST+AAPL A+ KK V F WG +Q+ A
Sbjct: 1026 KVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTKKGVPFTWGTSQENA 1085

Query: 901  FEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAVLMQERRMNAFFSDKLSGAALNYP 1080
            F  LK++L HAPLL LPDF K FE+ECDA+G+G+G V +QE +  A+FS+KLSG  LNY 
Sbjct: 1086 FHMLKDKLTHAPLLQLPDFNKTFELECDANGIGLGGVFLQEGKPVAYFSEKLSGPVLNYS 1145

Query: 1081 TYDKELYALVWALKTWQHYLW 1143
            TYDKELYALV  L+TWQHYLW
Sbjct: 1146 TYDKELYALVRTLETWQHYLW 1166



 Score =  154 bits (388), Expect = 8e-35
 Identities = 94/266 (35%), Positives = 139/266 (52%), Gaps = 2/266 (0%)
 Frame = +1

Query: 235  MCVECRAINNITIKYRYPVPRLDDTLEELHGSNIFSKID--LRSGYHQIRMREGDEWKTA 408
            +C     I+  +   R P  RL++T+ +     +   +   L   YH       D+ KT 
Sbjct: 1965 LCTHHIPIDPESTPSREPQRRLNNTMRDAVKKEVLKLLHAGLSIPYHT------DQSKTT 2018

Query: 409  FKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKFVVVYFDDILIYNKSLYEHLDH 588
            F   +G Y +  M FG+ NAP++F R M  I    I   + ++ DD  +Y K+    L +
Sbjct: 2019 FTCPYGTYAYRRMSFGLCNAPASFQRCMMSIFSDMIEDIMEIFMDDFSVYGKTFGHCLQN 2078

Query: 589  LRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFLVNSRGIMVDEEKIKAI*DWPKPTSASQ 768
            L  VL+  +++ L  N +KC F  R+ I LG  V+ RGI  D  KI  I   P P +   
Sbjct: 2079 LDKVLQRCQEKDLVLNWEKCHFMVREGIVLGHRVSERGIEFDRAKIDVIDQLPPPVNIKG 2138

Query: 769  VRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGEAQDRAFEFLKERLAHAPLLAL 948
            +RSF G A F RRF+ DFST+A PL  ++ K   F++ +A  ++FE LK+ L   P++  
Sbjct: 2139 IRSFLGHADFYRRFIKDFSTIARPLTNLLAKDTPFEFDDACLKSFEILKKALDSGPIIQP 2198

Query: 949  PDFTKVFEIECDASGVGIGAVLMQER 1026
            PD+T  FEI CDAS   +GAVL Q +
Sbjct: 2199 PDWTLPFEIMCDASDFAVGAVLGQTK 2224


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score =  552 bits (1423), Expect = e-155
 Identities = 264/381 (69%), Positives = 314/381 (82%)
 Frame = +1

Query: 1    FPYEMPD*LLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSKKLIRESM 180
            FP ++P  L PI GIEHQID IPGASLPNR  YR+N EETKE+ RQV ELL K  IRES+
Sbjct: 748  FPQDVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIMRQVQELLDKGYIRESL 807

Query: 181  SPCAVPILQVPKKDGSWRMCVECRAINNITIKYRYPVPRLDDTLEELHGSNIFSKIDLRS 360
            SPCAVPI+ VPKKDG+ RMCV+CR INNITI+YR+P+PRLDD L+EL GS IFSK+DLRS
Sbjct: 808  SPCAVPIILVPKKDGTSRMCVDCRGINNITIRYRHPIPRLDDMLDELSGSIIFSKVDLRS 867

Query: 361  GYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKFVVVYF 540
            GYHQIRM+ GDEWKTAFKTK GLYEWLVMPFG+TNAPSTFMRLMN +LRAFIG+FVVVYF
Sbjct: 868  GYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYF 927

Query: 541  DDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFLVNSRGIMVDEE 720
            DDILIY++SL +HLDHLRAV   LR  +L+ N+ KCTFC+ ++ FLG++V  +GI VD+ 
Sbjct: 928  DDILIYSRSLEDHLDHLRAVFTALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIEVDKA 987

Query: 721  KIKAI*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGEAQDRA 900
            KI+AI  WP+P + +QVRSF GLA F RRFV DFST+AAPL  + KK V + WG AQ+ A
Sbjct: 988  KIEAIESWPQPKTVTQVRSFLGLAGFYRRFVRDFSTIAAPLNELTKKDVPYSWGTAQEEA 1047

Query: 901  FEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAVLMQERRMNAFFSDKLSGAALNYP 1080
            F  LK++L HAPLL LPDF K FE+ECDASG+G+G VL+Q+ +  A+FS+KLSG +LNY 
Sbjct: 1048 FTVLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKLSGPSLNYS 1107

Query: 1081 TYDKELYALVWALKTWQHYLW 1143
            TYDKELYALV  L+TWQHYLW
Sbjct: 1108 TYDKELYALVRTLETWQHYLW 1128


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score =  552 bits (1422), Expect = e-154
 Identities = 262/381 (68%), Positives = 316/381 (82%)
 Frame = +1

Query: 1    FPYEMPD*LLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSKKLIRESM 180
            FP E+P  L PI GIEHQID IPGASLPNR  YR+N EETKE+QRQV ELL K  +RES+
Sbjct: 720  FPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESL 779

Query: 181  SPCAVPILQVPKKDGSWRMCVECRAINNITIKYRYPVPRLDDTLEELHGSNIFSKIDLRS 360
            SPC+VP+L VPKKDGSWRMCV+CRAINNITI+YR+P+PRLDD L+EL GS +FSKIDLRS
Sbjct: 780  SPCSVPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRS 839

Query: 361  GYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKFVVVYF 540
            GYHQIRM+ GDEWKTAFKTK GLYEWLVMPFG+TNAPSTFMRLMN +LRAFIG+FVVVYF
Sbjct: 840  GYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYF 899

Query: 541  DDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFLVNSRGIMVDEE 720
            DDILIY++S+ +H  HLRAV + LR  +L+ N++KCTFC+ ++ FL ++V  +GI VD+ 
Sbjct: 900  DDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLSYVVTPQGIEVDQA 959

Query: 721  KIKAI*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGEAQDRA 900
            K++AI +WP PT+ +QVRSF GLA F RRFV DFST+AAPL  + K++V F W  AQ  A
Sbjct: 960  KVEAIHNWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNA 1019

Query: 901  FEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAVLMQERRMNAFFSDKLSGAALNYP 1080
            F+ LK++L HAPLL LPDF K FE ECDASG+G+G VL+QE +  A+FS+KLSG +LNY 
Sbjct: 1020 FDTLKDKLTHAPLLQLPDFNKTFEHECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYS 1079

Query: 1081 TYDKELYALVWALKTWQHYLW 1143
            TYDKEL+ALV  L+TWQHYLW
Sbjct: 1080 TYDKELFALVRTLETWQHYLW 1100


>emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group]
          Length = 1170

 Score =  550 bits (1417), Expect = e-154
 Identities = 260/381 (68%), Positives = 315/381 (82%)
 Frame = +1

Query: 1    FPYEMPD*LLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSKKLIRESM 180
            FP E+P  L PI GIEHQID IPGASLPNR  YR+N EETKE+QRQ+ ELL K  +RES+
Sbjct: 353  FPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQMQELLDKGYVRESL 412

Query: 181  SPCAVPILQVPKKDGSWRMCVECRAINNITIKYRYPVPRLDDTLEELHGSNIFSKIDLRS 360
            SPC+VP+L VPKKDGSWRMCV+CRAINNITI+YR+P+PRLDD L+EL GS +F KIDLRS
Sbjct: 413  SPCSVPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFYKIDLRS 472

Query: 361  GYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKFVVVYF 540
            GYHQIRM+ GDEWKTAFKTK GLYEWLVMPFG+TNAPSTFMRLMN +LRAFIG+FVVVYF
Sbjct: 473  GYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYF 532

Query: 541  DDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFLVNSRGIMVDEE 720
            DDILIY++S+ +H  HLRAV + LR  +L+ N++KCTFC+ ++ FLG++V  +GI VD+ 
Sbjct: 533  DDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQA 592

Query: 721  KIKAI*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGEAQDRA 900
            K++AI  WP PT+ +QVRSF GLA F RRFV DFST+AAPL  + K++V F W  AQ  A
Sbjct: 593  KVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNA 652

Query: 901  FEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAVLMQERRMNAFFSDKLSGAALNYP 1080
            F+ LK++L HAPLL LPDF K  E+ECDASG+G+G VL+QE +  A+FS+KLSG +LNY 
Sbjct: 653  FDTLKDKLTHAPLLQLPDFNKTLELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYS 712

Query: 1081 TYDKELYALVWALKTWQHYLW 1143
            TYDKEL+ALV  L+TWQHYLW
Sbjct: 713  TYDKELFALVRTLETWQHYLW 733


>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  549 bits (1414), Expect = e-154
 Identities = 260/381 (68%), Positives = 315/381 (82%)
 Frame = +1

Query: 1    FPYEMPD*LLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSKKLIRESM 180
            FP E+P  L PI GIEHQID IPGASLPNR  YR+N EETKE+QRQV ELL K  +RES+
Sbjct: 616  FPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESL 675

Query: 181  SPCAVPILQVPKKDGSWRMCVECRAINNITIKYRYPVPRLDDTLEELHGSNIFSKIDLRS 360
            SPC+VP+L VPKKDGSWRMCV+CRAINNITI+YR+P+PRLDD L+EL GS +FSKIDL S
Sbjct: 676  SPCSVPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLCS 735

Query: 361  GYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKFVVVYF 540
            GYHQIRM+ GDEWKTAFKTK GLYEWLVMPFG+TNAPSTFMRLMN +LRAFIG+FVVVYF
Sbjct: 736  GYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYF 795

Query: 541  DDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFLVNSRGIMVDEE 720
            DDILIY++S+ +H  HLRAV + LR  +L+ N++KCTFC+ ++ FLG++V  +GI VD+ 
Sbjct: 796  DDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQA 855

Query: 721  KIKAI*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGEAQDRA 900
            K++AI  WP PT+ +QVRSF GLA F R FV DFST+AAPL  + K++V F W  AQ  A
Sbjct: 856  KVEAIHSWPVPTTITQVRSFLGLAGFYRLFVKDFSTIAAPLHELTKRNVTFTWAAAQRNA 915

Query: 901  FEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAVLMQERRMNAFFSDKLSGAALNYP 1080
            F+ LK++L HAPLL LPDF K FE+ECDASG+G+G VL+QE +  A+FS+KLSG +LNY 
Sbjct: 916  FDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYS 975

Query: 1081 TYDKELYALVWALKTWQHYLW 1143
            TYDK+L+ALV  L+TWQHYLW
Sbjct: 976  TYDKQLFALVRTLETWQHYLW 996


>emb|CAD39843.2| OSJNBb0072N21.12 [Oryza sativa Japonica Group]
          Length = 1239

 Score =  549 bits (1414), Expect = e-154
 Identities = 261/381 (68%), Positives = 314/381 (82%)
 Frame = +1

Query: 1    FPYEMPD*LLPIWGIEHQIDFIPGASLPNRPAYRSNSEETKELQRQVDELLSKKLIRESM 180
            F  E+P  L PI GIEHQID IPGASLPNR  YR+N EETKE+QRQV ELL K  +RES+
Sbjct: 498  FSKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESL 557

Query: 181  SPCAVPILQVPKKDGSWRMCVECRAINNITIKYRYPVPRLDDTLEELHGSNIFSKIDLRS 360
            SPCAVP+L VPKKDGSWRMCV+CRAINNITI+YR+P+PRLDD L+EL GS +FSKIDLRS
Sbjct: 558  SPCAVPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRS 617

Query: 361  GYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGVTNAPSTFMRLMNHILRAFIGKFVVVYF 540
            GYHQIRM+ GDEWKTAFKTK  LYEWLVMPFG+TNAPSTFMRLMN +LRAFIG+FVVVYF
Sbjct: 618  GYHQIRMKLGDEWKTAFKTKFSLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYF 677

Query: 541  DDILIYNKSLYEHLDHLRAVLEVLRKEKLYANIKKCTFCSRQLIFLGFLVNSRGIMVDEE 720
            D ILIY++S+ +H  HLRAV + LR  +L+ N++KCTFC+ ++ FLG++V  +GI VD+ 
Sbjct: 678  DGILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQA 737

Query: 721  KIKAI*DWPKPTSASQVRSFHGLASFCRRFV*DFSTLAAPLMAIIKKSVAFQWGEAQDRA 900
            K++AI  WP PT+ +QVRSF GLA F RRFV DFST+AAPL  + K++V F W  AQ  A
Sbjct: 738  KVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNA 797

Query: 901  FEFLKERLAHAPLLALPDFTKVFEIECDASGVGIGAVLMQERRMNAFFSDKLSGAALNYP 1080
            F+ LK++L HAPLL LPDF K FE+ECDASG+G+G VL+QE +  A+FS+KLSG +LNY 
Sbjct: 798  FDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEDKPVAYFSEKLSGPSLNYS 857

Query: 1081 TYDKELYALVWALKTWQHYLW 1143
            TYDKEL+ALV  L+TWQHYLW
Sbjct: 858  TYDKELFALVRTLETWQHYLW 878