BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00015131
         (674 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004305832.1| PREDICTED: pentatricopeptide repeat-containi...   318   1e-84
gb|EOX93021.1| Pentatricopeptide repeat (PPR-like) superfamily p...   311   9e-83
gb|EMJ17743.1| hypothetical protein PRUPE_ppb007734mg [Prunus pe...   307   2e-81
ref|XP_006484869.1| PREDICTED: pentatricopeptide repeat-containi...   304   2e-80
ref|XP_006437177.1| hypothetical protein CICLE_v10031197mg [Citr...   303   2e-80
ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containi...   300   3e-79
ref|XP_006356395.1| PREDICTED: pentatricopeptide repeat-containi...   298   1e-78
ref|XP_004250888.1| PREDICTED: pentatricopeptide repeat-containi...   298   1e-78
gb|EXB44509.1| hypothetical protein L484_000760 [Morus notabilis...   293   3e-77
ref|XP_002306741.1| pentatricopeptide repeat-containing family p...   291   2e-76
ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containi...   288   8e-76
ref|XP_002534070.1| pentatricopeptide repeat-containing protein,...   286   4e-75
ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containi...   276   3e-72
gb|ESW13851.1| hypothetical protein PHAVU_008G231600g [Phaseolus...   274   2e-71
ref|XP_002880012.1| pentatricopeptide repeat-containing protein ...   270   4e-70
ref|XP_006293939.1| hypothetical protein CARUB_v10022931mg [Caps...   266   3e-69
ref|NP_181820.1| pentatricopeptide repeat-containing protein [Ar...   265   1e-68
ref|XP_006411565.1| hypothetical protein EUTSA_v10017572mg [Eutr...   262   6e-68
ref|XP_004491336.1| PREDICTED: pentatricopeptide repeat-containi...   241   2e-61
ref|XP_003617444.1| Pentatricopeptide repeat-containing protein ...   239   7e-61

>ref|XP_004305832.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Fragaria vesca subsp. vesca]
          Length = 550

 Score =  318 bits (815), Expect = 1e-84
 Identities = 154/225 (68%), Positives = 184/225 (81%), Gaps = 1/225 (0%)
 Frame = +1

Query: 1   MLETNCHSIKDLKKIHAHLIKTGLAKDTIAASRVLAFCAT-ARDLDYAFSVFCQIEKQNL 177
           MLE  C ++KDL+KIHAHLIKTGLA DT+AASRVLAFCA+ A D++YA+ VF  I   NL
Sbjct: 26  MLENQCTNMKDLQKIHAHLIKTGLANDTVAASRVLAFCASPAGDINYAYMVFRHIHNPNL 85

Query: 178 FTWNTIIRGFCQSSNPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHG 357
           F WNTIIRGF  SSNP  AISLF++MLV++TV P++LTYPSVFKAY  LGLA DGAQLHG
Sbjct: 86  FIWNTIIRGFSNSSNPEAAISLFIDMLVTSTVQPQRLTYPSVFKAYAQLGLAHDGAQLHG 145

Query: 358 RIIKLGLEFDPFIRNSIIHMYANCGLLGNARKLFDENTDSDVVAWNSMVMGLAKCGQVEE 537
           R++KLGLE D F+RN+IIHMY+NCGLL  AR++FDE+ + D+VAWNSM+MGL+KCG+V E
Sbjct: 146 RVVKLGLESDQFVRNTIIHMYSNCGLLSEARRVFDEDLEFDIVAWNSMIMGLSKCGEVGE 205

Query: 538 AWGLFVKMPARNETSWNSMISGFVRNGKWIEALDLFCEMQDMKIR 672
           +  LF KMP RN  SWNSMI G VRNG + EALDLF EMQ  KI+
Sbjct: 206 SRRLFDKMPQRNSISWNSMIGGSVRNGMYTEALDLFGEMQKQKIK 250



 Score = 79.0 bits (193), Expect = 1e-12
 Identities = 53/221 (23%), Positives = 109/221 (49%), Gaps = 4/221 (1%)
 Frame = +1

Query: 10  TNCHSIKDLKKIHAHLIKTGLAKDTIAASRVLAFCATARDLDYAFSVFCQIEKQNLFTWN 189
           +NC  + + +++        L  D +A + ++   +   ++  +  +F ++ ++N  +WN
Sbjct: 167 SNCGLLSEARRV----FDEDLEFDIVAWNSMIMGLSKCGEVGESRRLFDKMPQRNSISWN 222

Query: 190 TIIRGFCQSSNPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIK 369
           ++I G  ++     A+ LF EM     + P + T  S+  A   LG    G  +H  I K
Sbjct: 223 SMIGGSVRNGMYTEALDLFGEMQ-KQKIKPSEFTMVSLLNASAQLGAIRQGEWIHEYIRK 281

Query: 370 LGLEFDPFIRNSIIHMYANCGLLGNARKLFDENTDSDVVAWNSMVMGLAKCGQVEEAWGL 549
             ++ +P +  +II+MY+ CG +  A  +F+    + +  WNS++MGLA  G  EEA  L
Sbjct: 282 NHIQLNPIVVTAIINMYSKCGSIEKAVHVFEAAPRTGLSCWNSIIMGLATNGCEEEAIEL 341

Query: 550 FVKMPAR----NETSWNSMISGFVRNGKWIEALDLFCEMQD 660
           F ++ +     ++ S+  +++    +G   +A   F  M++
Sbjct: 342 FSRLKSSSFVPDDVSFLGVLTACSHSGMVEKARKYFSVMRE 382


>gb|EOX93021.1| Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma
           cacao]
          Length = 538

 Score =  311 bits (798), Expect = 9e-83
 Identities = 152/226 (67%), Positives = 190/226 (84%), Gaps = 2/226 (0%)
 Frame = +1

Query: 1   MLETNCHSIKDLKKIHAHLIKTGLAKDTIAASRVLAFCAT-ARDLDYAFSVFCQIEKQNL 177
           +LE NC S+KDLKK+HA LIKTGL  D IAASRVLAFC + A D++YA+ VF QI+  NL
Sbjct: 27  LLENNCTSMKDLKKLHAQLIKTGLVNDIIAASRVLAFCVSPAGDMNYAYLVFTQIKNPNL 86

Query: 178 FTWNTIIRGFCQSSNPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHG 357
           FTWNTIIRGF QSSNP++AISLF++MLV +++ PE+LTYPSVFKAY  LGLA DG QLHG
Sbjct: 87  FTWNTIIRGFSQSSNPQIAISLFIDMLVGSSIQPERLTYPSVFKAYAQLGLACDGRQLHG 146

Query: 358 RIIKLGLEFDPFIRNSIIHMYANCGLLGNARKLFD-ENTDSDVVAWNSMVMGLAKCGQVE 534
           R+IKLGL++D FIRN+II+MYANCGLL  A ++FD E+ + D+VAWNSM++GLAKCG+V+
Sbjct: 147 RVIKLGLDYDQFIRNTIIYMYANCGLLSEAWRMFDEEHMELDIVAWNSMIIGLAKCGEVD 206

Query: 535 EAWGLFVKMPARNETSWNSMISGFVRNGKWIEALDLFCEMQDMKIR 672
           E+  LF KM +RN  SWNSMISG+VRNG+++EAL+LF EMQ+  IR
Sbjct: 207 ESRRLFNKMVSRNTVSWNSMISGYVRNGRFLEALELFQEMQEEHIR 252



 Score = 79.7 bits (195), Expect = 7e-13
 Identities = 47/161 (29%), Positives = 80/161 (49%)
 Frame = +1

Query: 79  DTIAASRVLAFCATARDLDYAFSVFCQIEKQNLFTWNTIIRGFCQSSNPRVAISLFVEML 258
           D +A + ++   A   ++D +  +F ++  +N  +WN++I G+ ++     A+ LF EM 
Sbjct: 188 DIVAWNSMIIGLAKCGEVDESRRLFNKMVSRNTVSWNSMISGYVRNGRFLEALELFQEMQ 247

Query: 259 VSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIKLGLEFDPFIRNSIIHMYANCGLL 438
               + P + T  S+  A   LG    G  +H  I+K   E +  +  +II MY  CG  
Sbjct: 248 -EEHIRPSEFTMVSLLNACACLGAITQGKWIHDYILKQNFELNGIVVTAIIDMYCKCGNA 306

Query: 439 GNARKLFDENTDSDVVAWNSMVMGLAKCGQVEEAWGLFVKM 561
             A ++F  +    +  WNSM++GLA  G   EA  LF K+
Sbjct: 307 EKALQVFTTSPKEGLSCWNSMILGLATNGCENEARQLFSKL 347


>gb|EMJ17743.1| hypothetical protein PRUPE_ppb007734mg [Prunus persica]
          Length = 297

 Score =  307 bits (786), Expect = 2e-81
 Identities = 148/225 (65%), Positives = 183/225 (81%), Gaps = 1/225 (0%)
 Frame = +1

Query: 1   MLETNCHSIKDLKKIHAHLIKTGLAKDTIAASRVLAFCAT-ARDLDYAFSVFCQIEKQNL 177
           MLE  C ++KDL+KIHAHLIKTGL  DT+AASRVLAFCA+ A +++YA+ VF  I+  NL
Sbjct: 26  MLEKQCTNMKDLQKIHAHLIKTGLVSDTVAASRVLAFCASPAGNINYAYMVFRNIQNPNL 85

Query: 178 FTWNTIIRGFCQSSNPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHG 357
           F WNTIIRGF +S +P +AISLF++MLV++ + P +LTYPSVFKAY  LGLA+DGAQLHG
Sbjct: 86  FIWNTIIRGFSESPSPEIAISLFIDMLVTSAIEPHRLTYPSVFKAYAQLGLAQDGAQLHG 145

Query: 358 RIIKLGLEFDPFIRNSIIHMYANCGLLGNARKLFDENTDSDVVAWNSMVMGLAKCGQVEE 537
           RI+KLGLE D FIRN+IIHMYANCG L  AR++FDE+ + D VAWNSM+MGL+K G+V E
Sbjct: 146 RILKLGLESDQFIRNTIIHMYANCGFLIEARRMFDEDLECDTVAWNSMIMGLSKWGEVSE 205

Query: 538 AWGLFVKMPARNETSWNSMISGFVRNGKWIEALDLFCEMQDMKIR 672
           A  LF K   RN  SWNSMISGFVRNGK+ EAL+LF EMQ+ +++
Sbjct: 206 AKRLFDKFSLRNSVSWNSMISGFVRNGKYTEALELFSEMQEERVK 250


>ref|XP_006484869.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Citrus sinensis]
          Length = 534

 Score =  304 bits (778), Expect = 2e-80
 Identities = 149/226 (65%), Positives = 185/226 (81%), Gaps = 2/226 (0%)
 Frame = +1

Query: 1   MLETNCHSIKDLKKIHAHLIKTGLAKDTIAASRVLAFCAT-ARDLDYAFSVFCQIEKQNL 177
           +L+  C S+KDLKKIHAHLIKTGLAKD IAASR+L FC + A D++YA+ VF QI+K NL
Sbjct: 25  LLDKQCTSMKDLKKIHAHLIKTGLAKDPIAASRILTFCTSPAGDINYAYLVFTQIKKPNL 84

Query: 178 FTWNTIIRGFCQSSNPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHG 357
           F WNTIIRGF QSS PR AI LF++MLV++ + P++LTYPS+FKAY  LGLA DGAQLHG
Sbjct: 85  FIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHG 144

Query: 358 RIIKLGLEFDPFIRNSIIHMYANCGLLGNARKLFDE-NTDSDVVAWNSMVMGLAKCGQVE 534
           R++K GLEFD FI N+II+MYANCG L  AR +FDE +T+ DVVAWNSM++GLAKCG+++
Sbjct: 145 RVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEID 204

Query: 535 EAWGLFVKMPARNETSWNSMISGFVRNGKWIEALDLFCEMQDMKIR 672
           E+  LF KM +RN  SWNSMISG+VRN K+ EAL+LF EMQ+  I+
Sbjct: 205 ESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIK 250



 Score = 82.4 bits (202), Expect = 1e-13
 Identities = 54/198 (27%), Positives = 96/198 (48%), Gaps = 4/198 (2%)
 Frame = +1

Query: 79  DTIAASRVLAFCATARDLDYAFSVFCQIEKQNLFTWNTIIRGFCQSSNPRVAISLFVEML 258
           D +A + ++   A   ++D +  +F ++  +N  +WN++I G+ ++   + A+ LF EM 
Sbjct: 186 DVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQ 245

Query: 259 VSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIKLGLEFDPFIRNSIIHMYANCGLL 438
               + P + T  S+  A   LG    G  +H  ++    E +  +  +II MY  CG  
Sbjct: 246 -EQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCP 304

Query: 439 GNARKLFDENTDSDVVAWNSMVMGLAKCGQVEEAWGLFVKMPARN----ETSWNSMISGF 606
             A ++F+      +  WNSMV GLA  G   EA  LF  + + N     TS+ ++++  
Sbjct: 305 ERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLTPDYTSFIAVLTAC 364

Query: 607 VRNGKWIEALDLFCEMQD 660
             +GK  +A D F  M +
Sbjct: 365 NHSGKVNQAKDYFTLMTE 382


>ref|XP_006437177.1| hypothetical protein CICLE_v10031197mg [Citrus clementina]
           gi|557539373|gb|ESR50417.1| hypothetical protein
           CICLE_v10031197mg [Citrus clementina]
          Length = 534

 Score =  303 bits (777), Expect = 2e-80
 Identities = 149/226 (65%), Positives = 185/226 (81%), Gaps = 2/226 (0%)
 Frame = +1

Query: 1   MLETNCHSIKDLKKIHAHLIKTGLAKDTIAASRVLAFCAT-ARDLDYAFSVFCQIEKQNL 177
           +L+  C S+KDLKKIHAHLIKTGL KD IAASR+LAFC + A D++YA+ VF QI+K NL
Sbjct: 25  LLDKQCTSMKDLKKIHAHLIKTGLPKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNL 84

Query: 178 FTWNTIIRGFCQSSNPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHG 357
           F WNTIIRGF QSS PR AI LF++MLV++ + P++LTYPS+FKAY  LGLA DGAQLHG
Sbjct: 85  FIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHG 144

Query: 358 RIIKLGLEFDPFIRNSIIHMYANCGLLGNARKLFDE-NTDSDVVAWNSMVMGLAKCGQVE 534
           R++K GLEFD FI N+II+MYANCG L  AR +FDE +T+ DVVAWNSM++GLAKCG+++
Sbjct: 145 RVVKQGLEFDQFIHNTIIYMYANCGFLSEARLIFDEVDTEFDVVAWNSMIIGLAKCGEID 204

Query: 535 EAWGLFVKMPARNETSWNSMISGFVRNGKWIEALDLFCEMQDMKIR 672
           E+  LF KM +RN  SWNSMISG+VRN K+ EAL+LF EMQ+  I+
Sbjct: 205 ESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIK 250



 Score = 80.1 bits (196), Expect = 6e-13
 Identities = 53/198 (26%), Positives = 95/198 (47%), Gaps = 4/198 (2%)
 Frame = +1

Query: 79  DTIAASRVLAFCATARDLDYAFSVFCQIEKQNLFTWNTIIRGFCQSSNPRVAISLFVEML 258
           D +A + ++   A   ++D +  +F ++  +N  +WN++I G+ ++   + A+ LF EM 
Sbjct: 186 DVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQ 245

Query: 259 VSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIKLGLEFDPFIRNSIIHMYANCGLL 438
               + P + T  S+  A   LG    G  +H  ++    E +  +  +II MY  CG  
Sbjct: 246 -EQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCP 304

Query: 439 GNARKLFDENTDSDVVAWNSMVMGLAKCGQVEEAWGLFVKMPARN----ETSWNSMISGF 606
             A ++F+      +  WNSMV GLA  G   EA  LF  + + N      S+ ++++  
Sbjct: 305 ERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTAC 364

Query: 607 VRNGKWIEALDLFCEMQD 660
             +GK  +A D F  M +
Sbjct: 365 NHSGKVNQAKDYFTLMTE 382


>ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic [Vitis vinifera]
           gi|302143555|emb|CBI22116.3| unnamed protein product
           [Vitis vinifera]
          Length = 533

 Score =  300 bits (768), Expect = 3e-79
 Identities = 147/226 (65%), Positives = 181/226 (80%), Gaps = 2/226 (0%)
 Frame = +1

Query: 1   MLETNCHSIKDLKKIHAHLIKTGLAKDTIAASRVLAFCATAR--DLDYAFSVFCQIEKQN 174
           +LE +C ++KDL+KIHAHL+KTGLAK  +A S VLAFCAT+   D++YA+ VF QI   N
Sbjct: 29  ILEKHCTTMKDLQKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSPN 88

Query: 175 LFTWNTIIRGFCQSSNPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLH 354
           LF+WNTIIRGF QSS P  AISLF++ML+ ++V P +LTYPSVFKAY  LGLA  GAQLH
Sbjct: 89  LFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLH 148

Query: 355 GRIIKLGLEFDPFIRNSIIHMYANCGLLGNARKLFDENTDSDVVAWNSMVMGLAKCGQVE 534
           GR+IKLGL+FDPFIRN+II+MYANCG L    K F E  D D+VAWNSM+MGLAKCG+V+
Sbjct: 149 GRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVD 208

Query: 535 EAWGLFVKMPARNETSWNSMISGFVRNGKWIEALDLFCEMQDMKIR 672
           E+  LF +MP RN  SWNSMISG+VRNG+  EALDLF +MQ+ +I+
Sbjct: 209 ESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIK 254



 Score = 84.7 bits (208), Expect = 2e-14
 Identities = 48/165 (29%), Positives = 85/165 (51%)
 Frame = +1

Query: 79  DTIAASRVLAFCATARDLDYAFSVFCQIEKQNLFTWNTIIRGFCQSSNPRVAISLFVEML 258
           D +A + ++   A   ++D +  +F ++  +N  +WN++I G+ ++   R A+ LF +M 
Sbjct: 190 DIVAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQ 249

Query: 259 VSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIKLGLEFDPFIRNSIIHMYANCGLL 438
               + P + T  S+  A   LG  + G  +H  I K   E +  +  SII MY  CG +
Sbjct: 250 -EERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSI 308

Query: 439 GNARKLFDENTDSDVVAWNSMVMGLAKCGQVEEAWGLFVKMPARN 573
           G A ++F+      + +WN+M++GLA  G   EA  LF ++   N
Sbjct: 309 GEAFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSN 353



 Score = 77.0 bits (188), Expect = 5e-12
 Identities = 53/215 (24%), Positives = 96/215 (44%), Gaps = 4/215 (1%)
 Frame = +1

Query: 40  KIHAHLIKTGLAKDTIAASRVLAFCATARDLDYAFSVFCQIEKQNLFTWNTIIRGFCQSS 219
           ++H  +IK GL  D    + ++   A    L   +  F +    ++  WN++I G  +  
Sbjct: 146 QLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCG 205

Query: 220 NPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIKLGLEFDPFIR 399
               +  LF EM +  TV     ++ S+   Y   G   +   L G++ +  ++   F  
Sbjct: 206 EVDESRKLFDEMPLRNTV-----SWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTM 260

Query: 400 NSIIHMYANCGLLGNARKLFD----ENTDSDVVAWNSMVMGLAKCGQVEEAWGLFVKMPA 567
            S+++  A  G L     + D     N + +V+   S++    KCG + EA+ +F   P 
Sbjct: 261 VSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPL 320

Query: 568 RNETSWNSMISGFVRNGKWIEALDLFCEMQDMKIR 672
           +  +SWN+MI G   NG   EA+ LF  ++   +R
Sbjct: 321 KGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLR 355


>ref|XP_006356395.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Solanum tuberosum]
          Length = 522

 Score =  298 bits (763), Expect = 1e-78
 Identities = 148/227 (65%), Positives = 179/227 (78%), Gaps = 3/227 (1%)
 Frame = +1

Query: 1   MLETNCHSIKDLKKIHAHLIKTGLAKDTIAASRVLAFCATAR---DLDYAFSVFCQIEKQ 171
           MLET C ++ DLKKIHAHLIK+GL KD IA+SRVLAF A +    D++YA  VF  IE  
Sbjct: 23  MLETKCTTMTDLKKIHAHLIKSGLIKDKIASSRVLAFSAKSPPIGDINYANLVFTHIENP 82

Query: 172 NLFTWNTIIRGFCQSSNPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQL 351
           NLFTWNTIIRGF +SS P+ AI LF+EML ++ V P  LTYPSVFKAY   GL ++GAQL
Sbjct: 83  NLFTWNTIIRGFSESSTPQYAIHLFIEMLNNSQVQPHLLTYPSVFKAYARGGLVKNGAQL 142

Query: 352 HGRIIKLGLEFDPFIRNSIIHMYANCGLLGNARKLFDENTDSDVVAWNSMVMGLAKCGQV 531
           HGRIIKLGLEFD FIRN++++MYA+CG L  ARKLFDE+   DVV+WNSM+MGLAK G++
Sbjct: 143 HGRIIKLGLEFDTFIRNTMLYMYASCGFLVEARKLFDEDEIEDVVSWNSMIMGLAKSGEI 202

Query: 532 EEAWGLFVKMPARNETSWNSMISGFVRNGKWIEALDLFCEMQDMKIR 672
           +++W LF KM  RN+ SWNSMISGFVRNGKW EAL+LF  MQ+  I+
Sbjct: 203 DDSWRLFSKMSTRNDVSWNSMISGFVRNGKWNEALELFSTMQEENIK 249



 Score = 79.7 bits (195), Expect = 7e-13
 Identities = 50/194 (25%), Positives = 89/194 (45%)
 Frame = +1

Query: 76  KDTIAASRVLAFCATARDLDYAFSVFCQIEKQNLFTWNTIIRGFCQSSNPRVAISLFVEM 255
           +D ++ + ++   A + ++D ++ +F ++  +N  +WN++I GF ++     A+ LF  M
Sbjct: 184 EDVVSWNSMIMGLAKSGEIDDSWRLFSKMSTRNDVSWNSMISGFVRNGKWNEALELFSTM 243

Query: 256 LVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIKLGLEFDPFIRNSIIHMYANCGL 435
                + P + T  S+  A  HLG  E G  ++  + K  +E +  +  +II MY     
Sbjct: 244 Q-EENIKPSEFTLVSLLNACGHLGALEQGNWIYKYVKKNNVELNVIVVTAIIDMYC---- 298

Query: 436 LGNARKLFDENTDSDVVAWNSMVMGLAKCGQVEEAWGLFVKMPARNETSWNSMISGFVRN 615
                                      KCG VE AW +F+ +  +  +SWNSMI G   N
Sbjct: 299 ---------------------------KCGNVEMAWHVFISISNKGLSSWNSMILGLATN 331

Query: 616 GKWIEALDLFCEMQ 657
           G   +A+ LF  +Q
Sbjct: 332 GFEDDAIKLFARLQ 345


>ref|XP_004250888.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Solanum lycopersicum]
          Length = 522

 Score =  298 bits (762), Expect = 1e-78
 Identities = 146/227 (64%), Positives = 180/227 (79%), Gaps = 3/227 (1%)
 Frame = +1

Query: 1   MLETNCHSIKDLKKIHAHLIKTGLAKDTIAASRVLAFCATAR---DLDYAFSVFCQIEKQ 171
           MLET C ++ DLKKIHAHLIK+GL KD IAASRVLAF A +    D++YA  VF  IE  
Sbjct: 23  MLETKCTTMTDLKKIHAHLIKSGLIKDKIAASRVLAFSAKSPPIGDINYANLVFTHIENP 82

Query: 172 NLFTWNTIIRGFCQSSNPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQL 351
           N FTWNTIIRGF +SS P+ AI LF+EML ++ V P  LTYPSVFKAY   G+A++GAQL
Sbjct: 83  NPFTWNTIIRGFSESSTPQYAIHLFIEMLNNSQVQPHLLTYPSVFKAYARGGIAKNGAQL 142

Query: 352 HGRIIKLGLEFDPFIRNSIIHMYANCGLLGNARKLFDENTDSDVVAWNSMVMGLAKCGQV 531
           HGRI+KLGLEFD FIRN++++MYA+CG L  ARKLFDE+   DVV+WNSM++GLAK G++
Sbjct: 143 HGRIMKLGLEFDTFIRNTLLYMYASCGFLVEARKLFDEDEIEDVVSWNSMIIGLAKSGEI 202

Query: 532 EEAWGLFVKMPARNETSWNSMISGFVRNGKWIEALDLFCEMQDMKIR 672
           +++W LF KMP RN+ SWNSMISGFVRNGKW EAL+LF  MQ+  ++
Sbjct: 203 DDSWRLFSKMPTRNDVSWNSMISGFVRNGKWNEALELFSTMQEENVK 249



 Score = 79.0 bits (193), Expect = 1e-12
 Identities = 44/162 (27%), Positives = 87/162 (53%)
 Frame = +1

Query: 76  KDTIAASRVLAFCATARDLDYAFSVFCQIEKQNLFTWNTIIRGFCQSSNPRVAISLFVEM 255
           +D ++ + ++   A + ++D ++ +F ++  +N  +WN++I GF ++     A+ LF  M
Sbjct: 184 EDVVSWNSMIIGLAKSGEIDDSWRLFSKMPTRNDVSWNSMISGFVRNGKWNEALELFSTM 243

Query: 256 LVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIKLGLEFDPFIRNSIIHMYANCGL 435
                V P + T  S+  A  HLG  E G  ++  + K  +E +  +  +II MY  C  
Sbjct: 244 Q-EENVKPSEFTLVSLLNACGHLGALEQGNWIYKYVKKNNVELNVIVVTAIIDMYCKCAN 302

Query: 436 LGNARKLFDENTDSDVVAWNSMVMGLAKCGQVEEAWGLFVKM 561
           +  A  +F  +++  + +WNSM++GLA  G  ++A  LF ++
Sbjct: 303 VEMAWHVFVSSSNKGLSSWNSMILGLATNGFEDDAIKLFARL 344


>gb|EXB44509.1| hypothetical protein L484_000760 [Morus notabilis]
           gi|587904202|gb|EXB92403.1| hypothetical protein
           L484_021387 [Morus notabilis]
          Length = 530

 Score =  293 bits (750), Expect = 3e-77
 Identities = 143/225 (63%), Positives = 180/225 (80%), Gaps = 1/225 (0%)
 Frame = +1

Query: 1   MLETNCHSIKDLKKIHAHLIKTGLAKDTIAASRVLAFCAT-ARDLDYAFSVFCQIEKQNL 177
           MLE  C ++ DL+KIHAHLIKTGL   TIA+SR+LAFCA+ A +++YA  VF QI+  NL
Sbjct: 31  MLEKRCATMSDLRKIHAHLIKTGLISHTIASSRLLAFCASPAGNINYALMVFSQIQNPNL 90

Query: 178 FTWNTIIRGFCQSSNPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHG 357
           F WNTIIRGF +SS P+ AI LF++MLV + + P++LTYPSVFKAY  LGLA  GAQLHG
Sbjct: 91  FIWNTIIRGFSRSSTPQTAIFLFIDMLVGSPLEPQRLTYPSVFKAYAQLGLACFGAQLHG 150

Query: 358 RIIKLGLEFDPFIRNSIIHMYANCGLLGNARKLFDENTDSDVVAWNSMVMGLAKCGQVEE 537
           R+IKLGL+ D F+RN+IIHMY NCG L  AR+LFDE+++ D+VAWNSM+MGL+KCG+V E
Sbjct: 151 RVIKLGLDCDRFVRNTIIHMYINCGFLSEARQLFDESSELDLVAWNSMIMGLSKCGEVGE 210

Query: 538 AWGLFVKMPARNETSWNSMISGFVRNGKWIEALDLFCEMQDMKIR 672
           +  LF +MP RN  SWNSMISG+VRNGK +EAL+LF +MQ   I+
Sbjct: 211 SRRLFDRMPLRNSVSWNSMISGYVRNGKCVEALELFGKMQGEGIK 255



 Score = 73.9 bits (180), Expect = 4e-11
 Identities = 46/161 (28%), Positives = 79/161 (49%)
 Frame = +1

Query: 79  DTIAASRVLAFCATARDLDYAFSVFCQIEKQNLFTWNTIIRGFCQSSNPRVAISLFVEML 258
           D +A + ++   +   ++  +  +F ++  +N  +WN++I G+ ++     A+ LF +M 
Sbjct: 191 DLVAWNSMIMGLSKCGEVGESRRLFDRMPLRNSVSWNSMISGYVRNGKCVEALELFGKMQ 250

Query: 259 VSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIKLGLEFDPFIRNSIIHMYANCGLL 438
               +   + T  S+  A   LG    G  +H  I K G+E +  +  +II MY  CG +
Sbjct: 251 GEG-IKASEFTMVSLLNASGRLGAIRQGEWIHEYITKNGIELNVIVVTAIIDMYCKCGSV 309

Query: 439 GNARKLFDENTDSDVVAWNSMVMGLAKCGQVEEAWGLFVKM 561
             A  +F       +  WNSMVMGLA  G  EEA  LF ++
Sbjct: 310 NKALSVFKTAPKLGLSCWNSMVMGLAMNGCEEEALELFSRL 350



 Score = 68.9 bits (167), Expect = 1e-09
 Identities = 48/210 (22%), Positives = 92/210 (43%), Gaps = 4/210 (1%)
 Frame = +1

Query: 40  KIHAHLIKTGLAKDTIAASRVLAFCATARDLDYAFSVFCQIEKQNLFTWNTIIRGFCQSS 219
           ++H  +IK GL  D    + ++        L  A  +F +  + +L  WN++I G  +  
Sbjct: 147 QLHGRVIKLGLDCDRFVRNTIIHMYINCGFLSEARQLFDESSELDLVAWNSMIMGLSKCG 206

Query: 220 NPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIKLGLEFDPFIR 399
               +  LF  M +  +V     ++ S+   Y   G   +  +L G++   G++   F  
Sbjct: 207 EVGESRRLFDRMPLRNSV-----SWNSMISGYVRNGKCVEALELFGKMQGEGIKASEFTM 261

Query: 400 NSIIHMYANCGLLGNARKLFDENTDS----DVVAWNSMVMGLAKCGQVEEAWGLFVKMPA 567
            S+++     G +     + +  T +    +V+   +++    KCG V +A  +F   P 
Sbjct: 262 VSLLNASGRLGAIRQGEWIHEYITKNGIELNVIVVTAIIDMYCKCGSVNKALSVFKTAPK 321

Query: 568 RNETSWNSMISGFVRNGKWIEALDLFCEMQ 657
              + WNSM+ G   NG   EAL+LF  ++
Sbjct: 322 LGLSCWNSMVMGLAMNGCEEEALELFSRLE 351



 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 40/176 (22%), Positives = 80/176 (45%), Gaps = 3/176 (1%)
 Frame = +1

Query: 22  SIKDLKKIHAHLIKTGLAKDTIAASRVLAFCATARDLDYAFSVFCQIEKQNLFTWNTIIR 201
           +I+  + IH ++ K G+  + I  + ++        ++ A SVF    K  L  WN+++ 
Sbjct: 273 AIRQGEWIHEYITKNGIELNVIVVTAIIDMYCKCGSVNKALSVFKTAPKLGLSCWNSMVM 332

Query: 202 GFCQSSNPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIKLGLE 381
           G   +     A+ LF  +  S  + P+ +++ +V  A  H G+  D A+ +  +++    
Sbjct: 333 GLAMNGCEEEALELFSRLESSIDLRPDGVSFLAVLTACNHSGMV-DKARDYFSLMRGKYN 391

Query: 382 FDPFIR--NSIIHMYANCGLLGNARKL-FDENTDSDVVAWNSMVMGLAKCGQVEEA 540
            +P  R  + ++ +    G L  A KL      + D + W S++    K G +E A
Sbjct: 392 IEPSTRHYSCMVDVLGKAGHLEEAEKLILSMPINPDAIIWGSLLSACRKHGNIEMA 447


>ref|XP_002306741.1| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|222856190|gb|EEE93737.1|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 509

 Score =  291 bits (744), Expect = 2e-76
 Identities = 143/226 (63%), Positives = 179/226 (79%), Gaps = 2/226 (0%)
 Frame = +1

Query: 1   MLETNCHSIKDLKKIHAHLIKTGLAKDTIAASRVLAFCAT-ARDLDYAFSVFCQIEKQNL 177
           ML+ NC S+KDL+KIHA LIKTGLAKDTIAASRVLAFC + A D++YA+ VF QI   NL
Sbjct: 1   MLDKNCTSMKDLQKIHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNL 60

Query: 178 FTWNTIIRGFCQSSNPRVAISLFVEML-VSATVHPEKLTYPSVFKAYTHLGLAEDGAQLH 354
           F WNTIIRGF QSS P  AISLF++M+  S T  P++LTYPSVFKAY  LGLA +GAQLH
Sbjct: 61  FVWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLH 120

Query: 355 GRIIKLGLEFDPFIRNSIIHMYANCGLLGNARKLFDENTDSDVVAWNSMVMGLAKCGQVE 534
           GR+IKLGLE D FI+N+I++MY NCG LG A+++FD  T  DVV WN+M++GLAKCG+++
Sbjct: 121 GRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEID 180

Query: 535 EAWGLFVKMPARNETSWNSMISGFVRNGKWIEALDLFCEMQDMKIR 672
           ++  LF KM  RN  SWNSMISG+VR G++ EA++LF  MQ+  I+
Sbjct: 181 KSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIK 226



 Score = 77.4 bits (189), Expect = 4e-12
 Identities = 44/165 (26%), Positives = 80/165 (48%)
 Frame = +1

Query: 79  DTIAASRVLAFCATARDLDYAFSVFCQIEKQNLFTWNTIIRGFCQSSNPRVAISLFVEML 258
           D +  + ++   A   ++D +  +F ++  +N  +WN++I G+ +      A+ LF  M 
Sbjct: 162 DVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQ 221

Query: 259 VSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIKLGLEFDPFIRNSIIHMYANCGLL 438
               + P + T  S+  A   LG    G  +H  I+K     +  +  +II MY+ CG +
Sbjct: 222 EEG-IKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSI 280

Query: 439 GNARKLFDENTDSDVVAWNSMVMGLAKCGQVEEAWGLFVKMPARN 573
             A ++F       +  WNS+++GLA  G+  EA  LF K+ + N
Sbjct: 281 DKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSN 325



 Score = 73.2 bits (178), Expect = 7e-11
 Identities = 54/216 (25%), Positives = 100/216 (46%), Gaps = 5/216 (2%)
 Frame = +1

Query: 40  KIHAHLIKTGLAKDTIAASRVLAFCATARDLDYAFSVFCQIEKQNLFTWNTIIRGFCQSS 219
           ++H  +IK GL  D    + +L        L  A  +F      ++ TWNT+I G  +  
Sbjct: 118 QLHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCG 177

Query: 220 NPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIKLGLEFDPFIR 399
               +  LF +ML+  TV     ++ S+   Y   G   +  +L  R+ + G++   F  
Sbjct: 178 EIDKSRRLFDKMLLRNTV-----SWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTM 232

Query: 400 NSIIHMYANCGLLGNARKLFDENTDSDVVAWNSMVMGL-----AKCGQVEEAWGLFVKMP 564
            S+++  A  G L     + D    ++  A NS+V+       +KCG +++A  +F   P
Sbjct: 233 VSLLNACACLGALRQGEWIHDYIVKNNF-ALNSIVITAIIDMYSKCGSIDKALQVFKSAP 291

Query: 565 ARNETSWNSMISGFVRNGKWIEALDLFCEMQDMKIR 672
            +  + WNS+I G   +G+  EA+ LF +++   ++
Sbjct: 292 KKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLK 327


>ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Cucumis sativus]
           gi|449530724|ref|XP_004172343.1| PREDICTED:
           pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Cucumis sativus]
          Length = 543

 Score =  288 bits (738), Expect = 8e-76
 Identities = 133/225 (59%), Positives = 185/225 (82%), Gaps = 1/225 (0%)
 Frame = +1

Query: 1   MLETNCHSIKDLKKIHAHLIKTGLAKDTIAASRVLAFCATAR-DLDYAFSVFCQIEKQNL 177
           M++  C +++DL++ HAHLIK+G A ++ AASR+LAFCA+   ++DYA+ VF Q++  NL
Sbjct: 29  MVDKYCTTMRDLQQFHAHLIKSGQAIESFAASRILAFCASPLGNMDYAYLVFLQMQNPNL 88

Query: 178 FTWNTIIRGFCQSSNPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHG 357
           F+WNT+IRGF QSSNP++A+ LF++MLVS+ V P++LTYPS+FKAY+ LGLA DGAQLHG
Sbjct: 89  FSWNTVIRGFSQSSNPQIALYLFIDMLVSSQVEPQRLTYPSIFKAYSQLGLAHDGAQLHG 148

Query: 358 RIIKLGLEFDPFIRNSIIHMYANCGLLGNARKLFDENTDSDVVAWNSMVMGLAKCGQVEE 537
           RIIKLGL+FDPFIRN+I++MYA  G L  AR++F++  + DVV+WNSM++GLAKCG+++E
Sbjct: 149 RIIKLGLQFDPFIRNTILYMYATGGFLSEARRIFNQEMEFDVVSWNSMILGLAKCGEIDE 208

Query: 538 AWGLFVKMPARNETSWNSMISGFVRNGKWIEALDLFCEMQDMKIR 672
           +  LF KMP +N  SWNSMI G+VRNG + EAL LF +MQ+ +I+
Sbjct: 209 SRKLFDKMPVKNPISWNSMIGGYVRNGMFKEALKLFIKMQEERIQ 253



 Score = 81.6 bits (200), Expect = 2e-13
 Identities = 43/154 (27%), Positives = 83/154 (53%)
 Frame = +1

Query: 79  DTIAASRVLAFCATARDLDYAFSVFCQIEKQNLFTWNTIIRGFCQSSNPRVAISLFVEML 258
           D ++ + ++   A   ++D +  +F ++  +N  +WN++I G+ ++   + A+ LF++M 
Sbjct: 189 DVVSWNSMILGLAKCGEIDESRKLFDKMPVKNPISWNSMIGGYVRNGMFKEALKLFIKMQ 248

Query: 259 VSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIKLGLEFDPFIRNSIIHMYANCGLL 438
               + P + T  S+  A   +G    G  +H  I K  L+ +  +  +II MY  CG +
Sbjct: 249 -EERIQPSEFTMVSLLNASAQIGALRQGVWIHEYIKKNNLQLNAIVVTAIIDMYCKCGSI 307

Query: 439 GNARKLFDENTDSDVVAWNSMVMGLAKCGQVEEA 540
           GNA ++F++     + +WNSM+ GLA  G  +EA
Sbjct: 308 GNALQVFEKIPCRSLSSWNSMIFGLAVNGCEKEA 341


>ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223525897|gb|EEF28314.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 533

 Score =  286 bits (732), Expect = 4e-75
 Identities = 138/224 (61%), Positives = 180/224 (80%), Gaps = 1/224 (0%)
 Frame = +1

Query: 1   MLETNCHSIKDLKKIHAHLIKTGLAKDTIAASRVLAFCAT-ARDLDYAFSVFCQIEKQNL 177
           ML+ NC ++KDLKKIH+ LIKTGLAKDT AASR+LAFCA+ A D++YA+ VF QI+  N+
Sbjct: 27  MLDKNCTTMKDLKKIHSQLIKTGLAKDTNAASRILAFCASPAGDINYAYLVFVQIQNPNI 86

Query: 178 FTWNTIIRGFCQSSNPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHG 357
           F WNTIIRGF +SS P+ +ISL+++ML+++ V P++LTYPSVFKA+  L LA +GAQLHG
Sbjct: 87  FAWNTIIRGFSRSSVPQNSISLYIDMLLTSPVQPQRLTYPSVFKAFAQLDLASEGAQLHG 146

Query: 358 RIIKLGLEFDPFIRNSIIHMYANCGLLGNARKLFDENTDSDVVAWNSMVMGLAKCGQVEE 537
           ++IKLGLE D FIRN+I+ MY NCG    ARK+FD   D D+VAWN+M+MG+AKCG V+E
Sbjct: 147 KMIKLGLENDSFIRNTILFMYVNCGFTSEARKVFDRGMDFDIVAWNTMIMGVAKCGLVDE 206

Query: 538 AWGLFVKMPARNETSWNSMISGFVRNGKWIEALDLFCEMQDMKI 669
           +  LF KM  RN  SWNSMISG+VRNG++ +AL+LF +MQ  +I
Sbjct: 207 SRRLFDKMSLRNAVSWNSMISGYVRNGRFFDALELFQKMQVERI 250



 Score = 87.8 bits (216), Expect = 3e-15
 Identities = 58/220 (26%), Positives = 107/220 (48%), Gaps = 4/220 (1%)
 Frame = +1

Query: 13  NCHSIKDLKKIHAHLIKTGLAKDTIAASRVLAFCATARDLDYAFSVFCQIEKQNLFTWNT 192
           NC    + +K+       G+  D +A + ++   A    +D +  +F ++  +N  +WN+
Sbjct: 169 NCGFTSEARKV----FDRGMDFDIVAWNTMIMGVAKCGLVDESRRLFDKMSLRNAVSWNS 224

Query: 193 IIRGFCQSSNPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIKL 372
           +I G+ ++     A+ LF +M V   + P + T  S+  A   LG    G  +H  ++K 
Sbjct: 225 MISGYVRNGRFFDALELFQKMQVER-IEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKK 283

Query: 373 GLEFDPFIRNSIIHMYANCGLLGNARKLFDENTDSDVVAWNSMVMGLAKCGQVEEAWGLF 552
             E +P +  +II MY+ CG +  A ++F       +  WNSM++GLA  GQ  EA  LF
Sbjct: 284 KFELNPIVVTAIIDMYSKCGSIDKAVQVFQSAPRRGLSCWNSMILGLAMNGQENEALQLF 343

Query: 553 VKMPAR----NETSWNSMISGFVRNGKWIEALDLFCEMQD 660
             + +     ++ S+ ++++     G   +A D F  M+D
Sbjct: 344 SVLQSSDLRPDDVSFIAVLTACDHTGMVDKAKDYFLLMRD 383


>ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Glycine max]
          Length = 534

 Score =  276 bits (707), Expect = 3e-72
 Identities = 137/224 (61%), Positives = 177/224 (79%), Gaps = 1/224 (0%)
 Frame = +1

Query: 1   MLETNCHSIKDLKKIHAHLIKTGLAKDTIAASRVLAFCATAR-DLDYAFSVFCQIEKQNL 177
           ML+T C ++KDL+KIHAH+IKTGLA  T+AASRVL FCA++  D++YA+ +F  I   NL
Sbjct: 30  MLQTQCTNMKDLQKIHAHIIKTGLAHHTVAASRVLTFCASSSGDINYAYLLFTTIPSPNL 89

Query: 178 FTWNTIIRGFCQSSNPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHG 357
           + WNTIIRGF +SS P +AISLFV+ML S+ + P++LTYPSVFKAY  LG   DGAQLHG
Sbjct: 90  YCWNTIIRGFSRSSTPHLAISLFVDMLCSSVL-PQRLTYPSVFKAYAQLGAGYDGAQLHG 148

Query: 358 RIIKLGLEFDPFIRNSIIHMYANCGLLGNARKLFDENTDSDVVAWNSMVMGLAKCGQVEE 537
           R++KLGLE D FI+N+II+MYAN GLL  AR++FDE  D DVVA NSM+MGLAKCG+V++
Sbjct: 149 RVVKLGLEKDQFIQNTIIYMYANSGLLSEARRVFDELVDLDVVACNSMIMGLAKCGEVDK 208

Query: 538 AWGLFVKMPARNETSWNSMISGFVRNGKWIEALDLFCEMQDMKI 669
           +  LF  MP R   +WNSMISG+VRN + +EAL+LF +MQ  ++
Sbjct: 209 SRRLFDNMPTRTRVTWNSMISGYVRNKRLMEALELFRKMQGERV 252



 Score = 78.2 bits (191), Expect = 2e-12
 Identities = 48/186 (25%), Positives = 91/186 (48%)
 Frame = +1

Query: 79  DTIAASRVLAFCATARDLDYAFSVFCQIEKQNLFTWNTIIRGFCQSSNPRVAISLFVEML 258
           D +A + ++   A   ++D +  +F  +  +   TWN++I G+ ++     A+ LF +M 
Sbjct: 189 DVVACNSMIMGLAKCGEVDKSRRLFDNMPTRTRVTWNSMISGYVRNKRLMEALELFRKMQ 248

Query: 259 VSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIKLGLEFDPFIRNSIIHMYANCGLL 438
               V P + T  S+  A  HLG  + G  +H  + +   E +  +  +II MY  CG++
Sbjct: 249 -GERVEPSEFTMVSLLSACAHLGALKHGEWVHDYVKRGHFELNVIVLTAIIDMYCKCGVI 307

Query: 439 GNARKLFDENTDSDVVAWNSMVMGLAKCGQVEEAWGLFVKMPARNETSWNSMISGFVRNG 618
             A ++F+ +    +  WNS+++GLA  G   +A   F K+ A +    +    G +   
Sbjct: 308 VKAIEVFEASPTRGLSCWNSIIIGLALNGYERKAIEYFSKLEASDLKPDHVSFIGVLTAC 367

Query: 619 KWIEAL 636
           K+I A+
Sbjct: 368 KYIGAV 373


>gb|ESW13851.1| hypothetical protein PHAVU_008G231600g [Phaseolus vulgaris]
          Length = 525

 Score =  274 bits (700), Expect = 2e-71
 Identities = 137/221 (61%), Positives = 172/221 (77%), Gaps = 1/221 (0%)
 Frame = +1

Query: 1   MLETNCHSIKDLKKIHAHLIKTGLAKDTIAASRVLAFCATAR-DLDYAFSVFCQIEKQNL 177
           ML+  C ++KDL+KIH H+IKTGLA D IAASRVL FCA++  D++YA+ VF  I   NL
Sbjct: 28  MLQNQCTNMKDLQKIHPHIIKTGLALDHIAASRVLTFCASSSGDINYAYLVFTGIPNPNL 87

Query: 178 FTWNTIIRGFCQSSNPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHG 357
           + WNTIIRGF +SS P+ AISLFV+ML SA V P++LTYPSVFKAY  LG   DGAQLHG
Sbjct: 88  YCWNTIIRGFSRSSTPQFAISLFVDMLYSA-VEPQRLTYPSVFKAYAQLGAGHDGAQLHG 146

Query: 358 RIIKLGLEFDPFIRNSIIHMYANCGLLGNARKLFDENTDSDVVAWNSMVMGLAKCGQVEE 537
           R++KLGLE D FI N+I++MYAN GL+  AR++FDE  + DVVA NSM+MGLAKCG+V++
Sbjct: 147 RVVKLGLEKDQFISNTILYMYANSGLMSEARRVFDEPLELDVVACNSMIMGLAKCGEVDK 206

Query: 538 AWGLFVKMPARNETSWNSMISGFVRNGKWIEALDLFCEMQD 660
           +  LF  MP R   SWNSMISG+VRNG+  E L+LF +MQ+
Sbjct: 207 SRRLFDNMPTRTAVSWNSMISGYVRNGRLTEGLELFRKMQE 247



 Score = 77.4 bits (189), Expect = 4e-12
 Identities = 52/201 (25%), Positives = 93/201 (46%), Gaps = 4/201 (1%)
 Frame = +1

Query: 70  LAKDTIAASRVLAFCATARDLDYAFSVFCQIEKQNLFTWNTIIRGFCQSSNPRVAISLFV 249
           L  D +A + ++   A   ++D +  +F  +  +   +WN++I G+ ++      + LF 
Sbjct: 184 LELDVVACNSMIMGLAKCGEVDKSRRLFDNMPTRTAVSWNSMISGYVRNGRLTEGLELFR 243

Query: 250 EMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIKLGLEFDPFIRNSIIHMYANC 429
           +M     V P + T  S+  A  HLG  + G  +H  I +   + +  +  +II MY  C
Sbjct: 244 KMQEEG-VEPSEFTMVSLLSACAHLGALQHGEWVHDYIKRGNFKLNVIVLTAIIDMYCKC 302

Query: 430 GLLGNARKLFDENTDSDVVAWNSMVMGLAKCGQVEEAWGLFVKMPARNE----TSWNSMI 597
           G +  A ++F  +    +  WNS+++GLA  G   EA   F K+ + N      S+  ++
Sbjct: 303 GSIEKAVEVFAASPTRGLPCWNSIIIGLALNGHEREAIEYFSKLESSNIKPDCVSFIGVL 362

Query: 598 SGFVRNGKWIEALDLFCEMQD 660
           +     G   EA D F  M D
Sbjct: 363 TACKYLGAVREARDYFALMMD 383



 Score = 74.3 bits (181), Expect = 3e-11
 Identities = 53/218 (24%), Positives = 99/218 (45%), Gaps = 4/218 (1%)
 Frame = +1

Query: 31  DLKKIHAHLIKTGLAKDTIAASRVLAFCATARDLDYAFSVFCQIEKQNLFTWNTIIRGFC 210
           D  ++H  ++K GL KD   ++ +L   A +  +  A  VF +  + ++   N++I G  
Sbjct: 140 DGAQLHGRVVKLGLEKDQFISNTILYMYANSGLMSEARRVFDEPLELDVVACNSMIMGLA 199

Query: 211 QSSNPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIKLGLEFDP 390
           +      +  LF  M     V     ++ S+   Y   G   +G +L  ++ + G+E   
Sbjct: 200 KCGEVDKSRRLFDNMPTRTAV-----SWNSMISGYVRNGRLTEGLELFRKMQEEGVEPSE 254

Query: 391 FIRNSIIHMYANCGLLGNARKLFDE----NTDSDVVAWNSMVMGLAKCGQVEEAWGLFVK 558
           F   S++   A+ G L +   + D     N   +V+   +++    KCG +E+A  +F  
Sbjct: 255 FTMVSLLSACAHLGALQHGEWVHDYIKRGNFKLNVIVLTAIIDMYCKCGSIEKAVEVFAA 314

Query: 559 MPARNETSWNSMISGFVRNGKWIEALDLFCEMQDMKIR 672
            P R    WNS+I G   NG   EA++ F +++   I+
Sbjct: 315 SPTRGLPCWNSIIIGLALNGHEREAIEYFSKLESSNIK 352


>ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297325851|gb|EFH56271.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 542

 Score =  270 bits (689), Expect = 4e-70
 Identities = 133/226 (58%), Positives = 176/226 (77%), Gaps = 2/226 (0%)
 Frame = +1

Query: 1   MLETNCHSIKDLKKIHAHLIKTGLAKDTIAASRVLAFC-ATARDLDYAFSVFCQIEKQNL 177
           +++T C ++++LK+IHA+LIKTGL  DT+AASRVLAFC A+  D +YA+ VF +I  +N 
Sbjct: 30  LIDTRCSTMRELKQIHANLIKTGLISDTVAASRVLAFCCASPSDRNYAYLVFTRINHKNP 89

Query: 178 FTWNTIIRGFCQSSNPRVAISLFVEMLVSA-TVHPEKLTYPSVFKAYTHLGLAEDGAQLH 354
           F WNTIIRGF +SS P +AIS+F++ML S+ +V P++LTYPSVFKAY  LGLA DG QLH
Sbjct: 90  FVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYASLGLARDGRQLH 149

Query: 355 GRIIKLGLEFDPFIRNSIIHMYANCGLLGNARKLFDENTDSDVVAWNSMVMGLAKCGQVE 534
           GR+IK GLE D FIRN+++HMY  CG L  A +LF      DVVAWNS++MGLAKCG ++
Sbjct: 150 GRVIKEGLEDDSFIRNTMLHMYVTCGCLVEAWRLFVGMMGFDVVAWNSIIMGLAKCGLID 209

Query: 535 EAWGLFVKMPARNETSWNSMISGFVRNGKWIEALDLFCEMQDMKIR 672
           +A  LF +MP RN  SWNSMISGFVRNG++ +AL++F EMQ+  ++
Sbjct: 210 QAQKLFDEMPQRNGVSWNSMISGFVRNGRFKDALEMFREMQERDVK 255



 Score = 85.9 bits (211), Expect = 1e-14
 Identities = 47/161 (29%), Positives = 84/161 (52%)
 Frame = +1

Query: 79  DTIAASRVLAFCATARDLDYAFSVFCQIEKQNLFTWNTIIRGFCQSSNPRVAISLFVEML 258
           D +A + ++   A    +D A  +F ++ ++N  +WN++I GF ++   + A+ +F EM 
Sbjct: 191 DVVAWNSIIMGLAKCGLIDQAQKLFDEMPQRNGVSWNSMISGFVRNGRFKDALEMFREMQ 250

Query: 259 VSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIKLGLEFDPFIRNSIIHMYANCGLL 438
               V P+  T  S+  A  +LG +E G  +H  I++   E +  +  ++I MY  CG  
Sbjct: 251 -ERDVKPDGFTMVSLLNACAYLGASEQGRWIHKYIVRNRFELNSIVITALIDMYCKCGCF 309

Query: 439 GNARKLFDENTDSDVVAWNSMVMGLAKCGQVEEAWGLFVKM 561
               K+F+      +  WNSM++GLA  G  E A  LF+++
Sbjct: 310 EEGLKVFECAPTKQLSCWNSMILGLANNGCEERAMDLFLEL 350


>ref|XP_006293939.1| hypothetical protein CARUB_v10022931mg [Capsella rubella]
           gi|565472276|ref|XP_006293940.1| hypothetical protein
           CARUB_v10022931mg [Capsella rubella]
           gi|482562647|gb|EOA26837.1| hypothetical protein
           CARUB_v10022931mg [Capsella rubella]
           gi|482562648|gb|EOA26838.1| hypothetical protein
           CARUB_v10022931mg [Capsella rubella]
          Length = 555

 Score =  266 bits (681), Expect = 3e-69
 Identities = 132/226 (58%), Positives = 174/226 (76%), Gaps = 2/226 (0%)
 Frame = +1

Query: 1   MLETNCHSIKDLKKIHAHLIKTGLAKDTIAASRVLAFC-ATARDLDYAFSVFCQIEKQNL 177
           +++T C ++++LK+IH +LIKTGL  DT+AASRVLAFC A+  D++YA+ VF +I  +N 
Sbjct: 25  LIDTQCSTMRELKQIHGNLIKTGLISDTVAASRVLAFCCASPSDMNYAYLVFTRINHKNP 84

Query: 178 FTWNTIIRGFCQSSNPRVAISLFVEMLVSA-TVHPEKLTYPSVFKAYTHLGLAEDGAQLH 354
           F WNTIIRGF QSS P +AIS+F++ML S+ +V P+ LTYPSVFKAY  LG A DG QLH
Sbjct: 85  FVWNTIIRGFSQSSFPEMAISIFIDMLCSSPSVKPQNLTYPSVFKAYGRLGQAIDGRQLH 144

Query: 355 GRIIKLGLEFDPFIRNSIIHMYANCGLLGNARKLFDENTDSDVVAWNSMVMGLAKCGQVE 534
           GR++K GLE D FIRN+++ MY   G L  A ++F   TD DVVAWNSM+MGLAKCG + 
Sbjct: 145 GRVLKEGLEDDSFIRNTMLQMYVTSGCLVEAWRIFVGMTDFDVVAWNSMIMGLAKCGLIS 204

Query: 535 EAWGLFVKMPARNETSWNSMISGFVRNGKWIEALDLFCEMQDMKIR 672
           +A  LF +MP RNE SWNSMISGFVRNG++ +AL++F EMQ+  ++
Sbjct: 205 QAQQLFDEMPHRNEVSWNSMISGFVRNGRFKDALEMFREMQERNVK 250



 Score = 81.3 bits (199), Expect = 3e-13
 Identities = 46/161 (28%), Positives = 81/161 (50%)
 Frame = +1

Query: 79  DTIAASRVLAFCATARDLDYAFSVFCQIEKQNLFTWNTIIRGFCQSSNPRVAISLFVEML 258
           D +A + ++   A    +  A  +F ++  +N  +WN++I GF ++   + A+ +F EM 
Sbjct: 186 DVVAWNSMIMGLAKCGLISQAQQLFDEMPHRNEVSWNSMISGFVRNGRFKDALEMFREMQ 245

Query: 259 VSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIKLGLEFDPFIRNSIIHMYANCGLL 438
               V P+  T  S+  A  +LG  E G  +H  I +   E +  +  ++I MY  CG +
Sbjct: 246 -ERNVKPDGFTMVSLLNACAYLGANEQGRWIHEYIARNRFELNSIVITALIEMYCKCGCI 304

Query: 439 GNARKLFDENTDSDVVAWNSMVMGLAKCGQVEEAWGLFVKM 561
               K+F+      +  WNSM++GLA  G  E A  LF+++
Sbjct: 305 EEGLKVFECAPKKQLSCWNSMILGLANNGCEERAMDLFLEL 345



 Score = 73.6 bits (179), Expect = 5e-11
 Identities = 50/213 (23%), Positives = 98/213 (46%), Gaps = 4/213 (1%)
 Frame = +1

Query: 31  DLKKIHAHLIKTGLAKDTIAASRVLAFCATARDLDYAFSVFCQIEKQNLFTWNTIIRGFC 210
           D +++H  ++K GL  D+   + +L    T+  L  A+ +F  +   ++  WN++I G  
Sbjct: 139 DGRQLHGRVLKEGLEDDSFIRNTMLQMYVTSGCLVEAWRIFVGMTDFDVVAWNSMIMGLA 198

Query: 211 QSSNPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIKLGLEFDP 390
           +      A  LF EM      H  ++++ S+   +   G  +D  ++   + +  ++ D 
Sbjct: 199 KCGLISQAQQLFDEM-----PHRNEVSWNSMISGFVRNGRFKDALEMFREMQERNVKPDG 253

Query: 391 FIRNSIIHMYANCGLLGNARKLFD----ENTDSDVVAWNSMVMGLAKCGQVEEAWGLFVK 558
           F   S+++  A  G     R + +       + + +   +++    KCG +EE   +F  
Sbjct: 254 FTMVSLLNACAYLGANEQGRWIHEYIARNRFELNSIVITALIEMYCKCGCIEEGLKVFEC 313

Query: 559 MPARNETSWNSMISGFVRNGKWIEALDLFCEMQ 657
            P +  + WNSMI G   NG    A+DLF E++
Sbjct: 314 APKKQLSCWNSMILGLANNGCEERAMDLFLELE 346


>ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g42920, chloroplastic; Flags: Precursor
           gi|4512663|gb|AAD21717.1| hypothetical protein
           [Arabidopsis thaliana] gi|20197867|gb|AAM15291.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|110738441|dbj|BAF01146.1| hypothetical protein
           [Arabidopsis thaliana] gi|330255093|gb|AEC10187.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 559

 Score =  265 bits (676), Expect = 1e-68
 Identities = 130/226 (57%), Positives = 172/226 (76%), Gaps = 2/226 (0%)
 Frame = +1

Query: 1   MLETNCHSIKDLKKIHAHLIKTGLAKDTIAASRVLAFC-ATARDLDYAFSVFCQIEKQNL 177
           +++T C ++++LK+IHA LIKTGL  DT+ ASRVLAFC A+  D++YA+ VF +I  +N 
Sbjct: 30  LIDTQCSTMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNP 89

Query: 178 FTWNTIIRGFCQSSNPRVAISLFVEMLVSA-TVHPEKLTYPSVFKAYTHLGLAEDGAQLH 354
           F WNTIIRGF +SS P +AIS+F++ML S+ +V P++LTYPSVFKAY  LG A DG QLH
Sbjct: 90  FVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLH 149

Query: 355 GRIIKLGLEFDPFIRNSIIHMYANCGLLGNARKLFDENTDSDVVAWNSMVMGLAKCGQVE 534
           G +IK GLE D FIRN+++HMY  CG L  A ++F      DVVAWNSM+MG AKCG ++
Sbjct: 150 GMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLID 209

Query: 535 EAWGLFVKMPARNETSWNSMISGFVRNGKWIEALDLFCEMQDMKIR 672
           +A  LF +MP RN  SWNSMISGFVRNG++ +ALD+F EMQ+  ++
Sbjct: 210 QAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVK 255



 Score = 82.8 bits (203), Expect = 9e-14
 Identities = 46/161 (28%), Positives = 84/161 (52%)
 Frame = +1

Query: 79  DTIAASRVLAFCATARDLDYAFSVFCQIEKQNLFTWNTIIRGFCQSSNPRVAISLFVEML 258
           D +A + ++   A    +D A ++F ++ ++N  +WN++I GF ++   + A+ +F EM 
Sbjct: 191 DVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQ 250

Query: 259 VSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIKLGLEFDPFIRNSIIHMYANCGLL 438
               V P+  T  S+  A  +LG +E G  +H  I++   E +  +  ++I MY  CG +
Sbjct: 251 -EKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCI 309

Query: 439 GNARKLFDENTDSDVVAWNSMVMGLAKCGQVEEAWGLFVKM 561
                +F+      +  WNSM++GLA  G  E A  LF ++
Sbjct: 310 EEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSEL 350


>ref|XP_006411565.1| hypothetical protein EUTSA_v10017572mg [Eutrema salsugineum]
           gi|557112734|gb|ESQ53018.1| hypothetical protein
           EUTSA_v10017572mg [Eutrema salsugineum]
          Length = 546

 Score =  262 bits (670), Expect = 6e-68
 Identities = 126/225 (56%), Positives = 172/225 (76%), Gaps = 1/225 (0%)
 Frame = +1

Query: 1   MLETNCHSIKDLKKIHAHLIKTGLAKDTIAASRVLAFCATA-RDLDYAFSVFCQIEKQNL 177
           +++T C ++++LK+IHA+LIKTGL  DTIAASRVLAFC T+  D+ YA+ +F +I  +N 
Sbjct: 30  LIDTQCSTMRELKQIHANLIKTGLISDTIAASRVLAFCCTSPSDMSYAYLLFTRINHKNP 89

Query: 178 FTWNTIIRGFCQSSNPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHG 357
           F WNTIIRGF +SS P ++I++F++M  SA+  P++LTYPSVFKAY  LG A DG QLHG
Sbjct: 90  FVWNTIIRGFSRSSFPEMSITIFIDMFSSASAKPQRLTYPSVFKAYASLGKARDGMQLHG 149

Query: 358 RIIKLGLEFDPFIRNSIIHMYANCGLLGNARKLFDENTDSDVVAWNSMVMGLAKCGQVEE 537
            +IK GLE D FIRN+++HMYA CG    A ++F      DVVAWNSM+MGLA+ G +E+
Sbjct: 150 MVIKEGLEDDSFIRNTMLHMYATCGCFVEAWRIFMAMKHFDVVAWNSMMMGLARYGLIEQ 209

Query: 538 AWGLFVKMPARNETSWNSMISGFVRNGKWIEALDLFCEMQDMKIR 672
           A  LF +MP RNE SWNSMISGFV+NG++ +AL++F +MQ+  ++
Sbjct: 210 AQKLFDEMPQRNEISWNSMISGFVKNGRFKDALEMFRKMQERNVK 254



 Score = 88.6 bits (218), Expect = 2e-15
 Identities = 53/198 (26%), Positives = 102/198 (51%), Gaps = 4/198 (2%)
 Frame = +1

Query: 79  DTIAASRVLAFCATARDLDYAFSVFCQIEKQNLFTWNTIIRGFCQSSNPRVAISLFVEML 258
           D +A + ++   A    ++ A  +F ++ ++N  +WN++I GF ++   + A+ +F +M 
Sbjct: 190 DVVAWNSMMMGLARYGLIEQAQKLFDEMPQRNEISWNSMISGFVKNGRFKDALEMFRKMQ 249

Query: 259 VSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIKLGLEFDPFIRNSIIHMYANCGLL 438
               V P+  T  S+  A  +LG +E G  +H  I+K   E +  +  ++I MY  CG +
Sbjct: 250 -ERNVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVKNRFELNSIVITALIDMYCKCGCI 308

Query: 439 GNARKLFDENTDSDVVAWNSMVMGLAKCGQVEEAWGLFVKMPAR----NETSWNSMISGF 606
               ++F+   +  +  WNSMV+GLA  G  E A  LF ++ +     +  S+  +++  
Sbjct: 309 EEGLRVFESAPNKQLSCWNSMVLGLANNGYEERAMDLFSELESSDLEPDSVSFIGVLTAC 368

Query: 607 VRNGKWIEALDLFCEMQD 660
             +GK  EA + F  M++
Sbjct: 369 AYSGKVDEAGEFFRLMRE 386


>ref|XP_004491336.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Cicer arietinum]
          Length = 536

 Score =  241 bits (614), Expect = 2e-61
 Identities = 119/221 (53%), Positives = 166/221 (75%), Gaps = 2/221 (0%)
 Frame = +1

Query: 1   MLETNCHSIKDLKKIHAHLIKTGLAKDTIAASRVLAFCAT-ARDLDYAFSVFCQIEKQNL 177
           ML+ +C ++K    I+ H+IKTGL  + IA++RVL FCA+ + +++YA+ +F ++   NL
Sbjct: 30  MLQNHCTTLKHFHMIYPHIIKTGLTHNPIASTRVLTFCASPSGNINYAYKLFARMPNPNL 89

Query: 178 FTWNTIIRGFCQSSNPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHG 357
           ++WNTIIR F +SS P+ AISLFV+ML S  + P+ LTYPSVFKAY  L   + G+QLHG
Sbjct: 90  YSWNTIIRAFSRSSTPQFAISLFVDMLYSQ-IQPQHLTYPSVFKAYAQLSAGDYGSQLHG 148

Query: 358 RIIKLGLEFDPFIRNSIIHMYANCGLLGNARKLFDENTD-SDVVAWNSMVMGLAKCGQVE 534
            ++KLGL+ D FI N+II+MYAN GLL  A+++FDE  +  DVVA+NSM+MG AKCG+++
Sbjct: 149 MVVKLGLQRDQFIHNTIIYMYANSGLLSEAKRVFDEKLELGDVVAFNSMIMGFAKCGEID 208

Query: 535 EAWGLFVKMPARNETSWNSMISGFVRNGKWIEALDLFCEMQ 657
           EA  LF +M  R   +WNSMISG+VRNGK +EAL+LF +MQ
Sbjct: 209 EARKLFDEMFTRTSVTWNSMISGYVRNGKLMEALELFHKMQ 249



 Score = 89.4 bits (220), Expect = 9e-16
 Identities = 50/183 (27%), Positives = 92/183 (50%)
 Frame = +1

Query: 13  NCHSIKDLKKIHAHLIKTGLAKDTIAASRVLAFCATARDLDYAFSVFCQIEKQNLFTWNT 192
           N   + + K++    ++ G   D +A + ++   A   ++D A  +F ++  +   TWN+
Sbjct: 171 NSGLLSEAKRVFDEKLELG---DVVAFNSMIMGFAKCGEIDEARKLFDEMFTRTSVTWNS 227

Query: 193 IIRGFCQSSNPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIKL 372
           +I G+ ++     A+ LF +M +   V P + T  S+  A  HLG  + G  +H  I + 
Sbjct: 228 MISGYVRNGKLMEALELFHKMQLEERVEPSEFTMVSLLNACAHLGALQHGKWVHDYIKRN 287

Query: 373 GLEFDPFIRNSIIHMYANCGLLGNARKLFDENTDSDVVAWNSMVMGLAKCGQVEEAWGLF 552
             E +  +  +II MY  CG + NA ++FD      +  WNS+++GLA  G   EA+  F
Sbjct: 288 DFELNVIVLTAIIDMYCKCGSVENAIQVFDTYPGRGLSCWNSIIIGLAMNGHEREAFEFF 347

Query: 553 VKM 561
            ++
Sbjct: 348 SEL 350


>ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355518779|gb|AET00403.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 542

 Score =  239 bits (609), Expect = 7e-61
 Identities = 123/224 (54%), Positives = 165/224 (73%), Gaps = 5/224 (2%)
 Frame = +1

Query: 1   MLETNCHSIKDLKKIHAHLIKTGLAKDTIAASRVLAFCAT-ARDLDYAFSVFCQIEKQNL 177
           ML+ +C +I    +I+ H+IKTGL  + IA++R L FCA+ + +++YA+ +F ++   NL
Sbjct: 33  MLQNHCTTINHFHQIYPHIIKTGLTLNPIASTRALTFCASPSGNINYAYKLFVRMPNPNL 92

Query: 178 FTWNTIIRGFCQSSNPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHG 357
           ++WNTIIR F +SS P+ AISLFV+ML S  + P+ LTYPSVFKAY  LG A  GAQLHG
Sbjct: 93  YSWNTIIRAFSRSSTPQFAISLFVDMLYSQ-IQPQYLTYPSVFKAYAQLGHAHYGAQLHG 151

Query: 358 RIIKLGLEFDPFIRNSIIHMYANCGLLGNARKLFD----ENTDSDVVAWNSMVMGLAKCG 525
           R++KLGL+ D FI N+II+MYAN GL+  AR++FD    E  D DVVA NSM+MG AKCG
Sbjct: 152 RVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFDGKKLELYDHDVVAINSMIMGYAKCG 211

Query: 526 QVEEAWGLFVKMPARNETSWNSMISGFVRNGKWIEALDLFCEMQ 657
           +++E+  LF  M  R   SWNSMISG+VRNGK +EAL+LF +MQ
Sbjct: 212 EIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQ 255



 Score = 75.9 bits (185), Expect = 1e-11
 Identities = 44/161 (27%), Positives = 81/161 (50%)
 Frame = +1

Query: 79  DTIAASRVLAFCATARDLDYAFSVFCQIEKQNLFTWNTIIRGFCQSSNPRVAISLFVEML 258
           D +A + ++   A   ++D + ++F  +  +   +WN++I G+ ++     A+ LF +M 
Sbjct: 196 DVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQ 255

Query: 259 VSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIKLGLEFDPFIRNSIIHMYANCGLL 438
           V       + T  S+  A  HLG  + G  +H  I +   E +  +  +II MY  CG +
Sbjct: 256 VEG-FEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSV 314

Query: 439 GNARKLFDENTDSDVVAWNSMVMGLAKCGQVEEAWGLFVKM 561
            NA ++F+      +  WNS+++GLA  G   EA+  F K+
Sbjct: 315 ENAVEVFETCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKL 355



 Score = 70.9 bits (172), Expect = 3e-10
 Identities = 49/218 (22%), Positives = 99/218 (45%), Gaps = 8/218 (3%)
 Frame = +1

Query: 40  KIHAHLIKTGLAKDTIAASRVLAFCATARDLDYAFSVF----CQIEKQNLFTWNTIIRGF 207
           ++H  ++K GL  D    + ++   A    +  A  VF     ++   ++   N++I G+
Sbjct: 148 QLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFDGKKLELYDHDVVAINSMIMGY 207

Query: 208 CQSSNPRVAISLFVEMLVSATVHPEKLTYPSVFKAYTHLGLAEDGAQLHGRIIKLGLEFD 387
            +      + +LF +M+   +V     ++ S+   Y   G   +  +L  ++   G E  
Sbjct: 208 AKCGEIDESRNLFDDMITRTSV-----SWNSMISGYVRNGKLMEALELFNKMQVEGFEVS 262

Query: 388 PFIRNSIIHMYANCGLLGNARKLFD----ENTDSDVVAWNSMVMGLAKCGQVEEAWGLFV 555
            F   S+++  A+ G L + + + D     + + +V+   +++    KCG VE A  +F 
Sbjct: 263 EFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVEVFE 322

Query: 556 KMPARNETSWNSMISGFVRNGKWIEALDLFCEMQDMKI 669
             P R  + WNS+I G   NG   EA + F +++  K+
Sbjct: 323 TCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSKL 360